AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452080 MtrunA17_Chr3g0140531 97.028 471 14 0 1 471 1 471 0.0 939
Msa1452080 MtrunA17_Chr1g0146331 68.845 459 140 2 14 471 10 466 0.0 677
Msa1452080 MtrunA17_Chr2g0293331 68.202 456 143 1 16 471 4 457 0.0 672
Msa1452080 MtrunA17_Chr1g0146391 67.467 458 147 1 14 471 2 457 0.0 656
Msa1452080 MtrunA17_Chr1g0146411 57.113 471 193 4 2 470 9 472 0.0 553
Msa1452080 MtrunA17_Chr3g0140541 57.447 470 195 2 1 470 5 469 0.0 542
Msa1452080 MtrunA17_Chr3g0140761 52.391 460 217 2 14 471 23 482 0.0 516
Msa1452080 MtrunA17_Chr1g0146491 51.193 461 223 2 13 471 12 472 6.38e-179 509
Msa1452080 MtrunA17_Chr8g0384661 52.772 451 208 3 18 467 44 490 8.42e-173 494
Msa1452080 MtrunA17_Chr1g0206871 52.088 455 207 3 23 467 14 467 1.43e-168 483
Msa1452080 MtrunA17_Chr4g0037201 49.467 469 231 2 5 467 40 508 2.05e-168 484
Msa1452080 MtrunA17_Chr3g0125081 49.028 463 231 3 7 467 16 475 2.28e-166 478
Msa1452080 MtrunA17_Chr3g0125101 48.491 464 233 4 7 467 16 476 3.90e-163 469
Msa1452080 MtrunA17_Chr1g0159761 50.108 463 228 2 7 467 10 471 5.14e-163 469
Msa1452080 MtrunA17_Chr3g0125091 47.957 465 234 5 7 467 16 476 2.89e-162 467
Msa1452080 MtrunA17_Chr3g0130641 47.403 462 232 4 10 467 19 473 9.32e-157 453
Msa1452080 MtrunA17_Chr3g0130651 50.000 470 226 6 1 467 1 464 1.02e-152 442
Msa1452080 MtrunA17_Chr3g0103211 45.805 441 235 2 18 457 17 454 2.63e-145 423
Msa1452080 MtrunA17_Chr3g0103231 43.886 458 252 3 1 457 1 454 2.50e-144 421
Msa1452080 MtrunA17_Chr3g0103221 45.291 446 240 2 21 465 27 469 7.13e-143 417
Msa1452080 MtrunA17_Chr5g0447221 44.521 438 235 5 23 457 28 460 4.02e-134 395
Msa1452080 MtrunA17_Chr3g0103271 41.485 458 263 3 2 457 5 459 9.20e-124 369
Msa1452080 MtrunA17_Chr1g0206851 50.137 365 174 3 105 467 19 377 7.25e-123 363
Msa1452080 MtrunA17_Chr5g0447231 39.359 437 260 3 23 457 24 457 5.12e-109 330
Msa1452080 MtrunA17_Chr1g0206831 50.301 332 157 3 137 466 14 339 3.05e-105 317
Msa1452080 MtrunA17_Chr3g0103251 40.278 360 188 3 128 460 11 370 1.28e-96 296
Msa1452080 MtrunA17_Chr5g0402151 48.986 296 117 4 27 322 3 264 1.50e-87 269
Msa1452080 MtrunA17_Chr1g0206821 53.086 243 113 1 13 254 11 253 1.60e-81 261
Msa1452080 MtrunA17_Chr1g0206821 52.558 215 101 1 254 467 313 527 5.38e-75 244
Msa1452080 MtrunA17_Chr3g0130671 46.288 229 121 2 4 232 20 246 1.39e-63 207
Msa1452080 MtrunA17_Chr3g0130661 47.778 180 90 2 289 467 1 177 9.47e-57 186
Msa1452080 MtrunA17_Chr6g0458931 25.586 469 310 12 4 467 20 454 3.40e-41 152
Msa1452080 MtrunA17_Chr2g0331721 27.045 440 275 15 2 432 23 425 1.56e-38 145
Msa1452080 MtrunA17_Chr4g0057851 27.295 414 262 9 24 433 10 388 1.98e-38 144
Msa1452080 MtrunA17_Chr8g0376991 25.949 474 305 13 1 467 1 435 1.78e-37 142
Msa1452080 MtrunA17_Chr1g0184721 25.751 466 305 13 10 467 5 437 8.81e-37 140
Msa1452080 MtrunA17_Chr3g0077651 27.740 447 290 9 24 467 52 468 6.59e-35 135
Msa1452080 MtrunA17_Chr1g0146351 56.311 103 44 1 34 136 13 114 7.73e-34 123
Msa1452080 MtrunA17_Chr1g0206861 61.957 92 35 0 14 105 11 102 1.26e-33 124
Msa1452080 MtrunA17_Chr4g0027241 27.803 446 266 15 3 425 10 422 1.85e-33 131
Msa1452080 MtrunA17_Chr5g0422741 27.468 466 290 12 13 467 10 438 1.06e-32 129
Msa1452080 MtrunA17_Chr1g0206841 53.333 105 46 1 1 105 1 102 1.64e-32 119
Msa1452080 MtrunA17_Chr3g0103261 43.704 135 75 1 1 135 1 134 4.11e-32 120
Msa1452080 MtrunA17_Chr1g0198541 26.724 464 300 12 8 467 9 436 3.48e-31 124
Msa1452080 MtrunA17_Chr3g0122921 24.528 477 292 15 6 467 4 427 1.31e-30 123
Msa1452080 MtrunA17_Chr2g0328081 25.895 475 292 11 4 467 2 427 1.70e-29 119
Msa1452080 MtrunA17_Chr1g0198531 25.581 473 309 12 1 467 1 436 3.47e-29 119
Msa1452080 MtrunA17_Chr6g0458921 26.022 465 292 11 14 467 4 427 8.19e-29 117
Msa1452080 MtrunA17_Chr6g0459011 25.472 424 273 10 40 457 1 387 1.82e-28 116
Msa1452080 MtrunA17_Chr6g0459031 25.586 469 294 12 10 467 3 427 1.92e-27 114
Msa1452080 MtrunA17_Chr7g0230011 24.946 465 306 13 10 467 14 442 1.93e-26 111
Msa1452080 MtrunA17_Chr1g0198081 24.160 476 321 14 2 467 33 478 6.33e-26 110
Msa1452080 MtrunA17_Chr3g0143701 24.890 454 302 11 15 457 73 498 9.06e-26 110
Msa1452080 MtrunA17_Chr6g0459021 24.009 454 294 11 24 467 34 446 2.71e-25 108
Msa1452080 MtrunA17_Chr4g0038711 27.692 455 279 15 24 460 70 492 1.70e-23 103
Msa1452080 MtrunA17_Chr8g0387941 23.126 467 321 11 10 467 10 447 3.46e-23 102
Msa1452080 MtrunA17_Chr6g0459001 24.319 477 305 12 24 467 22 475 5.85e-22 98.6
Msa1452080 MtrunA17_Chr2g0281341 22.414 464 299 13 24 467 95 517 1.05e-13 73.2
Msa1452080 MtrunA17_Chr5g0406331 22.926 458 311 14 24 470 86 512 1.38e-13 72.8
Msa1452080 MtrunA17_Chr5g0436281 21.635 416 284 11 55 467 4 380 3.25e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452080 AT1G10010.1 53.084 454 212 1 15 467 18 471 0.0 533
Msa1452080 AT1G10010.2 53.084 454 212 1 15 467 19 472 0.0 533
Msa1452080 AT1G58360.1 53.407 455 211 1 14 467 26 480 0.0 523
Msa1452080 AT5G49630.1 52.401 479 215 5 1 467 1 478 1.39e-179 511
Msa1452080 AT5G09220.1 50.885 452 219 2 18 467 39 489 1.13e-169 487
Msa1452080 AT5G63850.1 50.221 452 222 2 18 467 12 462 1.22e-164 473
Msa1452080 AT1G44100.1 48.614 469 227 3 9 467 12 476 2.47e-164 473
Msa1452080 AT1G77380.1 49.451 455 228 2 14 467 19 472 2.21e-160 462
Msa1452080 AT5G23810.1 44.820 444 236 4 20 457 21 461 3.03e-124 370
Msa1452080 AT5G23810.2 46.789 327 168 3 20 343 21 344 2.10e-96 295
Msa1452080 AT5G23810.4 44.118 238 127 3 20 254 21 255 3.24e-60 198
Msa1452080 AT5G23810.5 48.168 191 96 2 20 207 21 211 8.86e-53 177
Msa1452080 AT5G23810.3 48.168 191 96 2 20 207 21 211 8.86e-53 177
Msa1452080 AT1G24400.1 26.850 473 302 11 1 467 6 440 1.95e-40 150
Msa1452080 AT5G40780.1 24.947 473 309 13 2 467 12 445 3.61e-37 142
Msa1452080 AT1G61270.1 27.527 465 290 11 5 454 2 434 5.77e-37 141
Msa1452080 AT1G48640.1 27.039 466 287 14 14 467 28 452 1.05e-36 140
Msa1452080 AT1G67640.1 26.415 477 304 11 1 467 1 440 1.19e-35 137
Msa1452080 AT3G01760.1 27.865 445 283 12 24 463 31 442 1.29e-35 137
Msa1452080 AT5G40780.3 25.173 433 283 11 40 467 1 397 8.04e-35 134
Msa1452080 AT5G40780.2 25.173 433 283 11 40 467 1 397 8.04e-35 134
Msa1452080 AT1G71680.1 26.598 485 292 13 2 467 8 447 9.47e-35 135
Msa1452080 AT1G71680.2 28.375 363 206 11 2 342 8 338 5.70e-32 125
Msa1452080 AT1G25530.1 27.679 448 285 12 24 467 27 439 1.68e-30 123
Msa1452080 AT1G08230.2 25.466 483 309 16 1 467 1 448 1.72e-25 108
Msa1452080 AT5G41800.1 23.348 454 307 11 23 467 25 446 5.32e-21 95.9
Msa1452080 AT3G55740.1 22.749 422 272 12 55 467 60 436 6.41e-16 80.1
Msa1452080 AT1G08230.3 26.875 320 195 11 160 467 56 348 9.54e-16 79.0
Msa1452080 AT3G55740.2 22.749 422 272 12 55 467 4 380 1.07e-15 79.0
Msa1452080 AT3G55740.3 22.749 422 272 12 55 467 4 380 1.07e-15 79.0
Msa1452080 AT1G08230.4 26.875 320 195 11 160 467 37 329 1.27e-15 78.2
Msa1452080 AT1G08230.6 26.875 320 195 11 160 467 37 329 1.27e-15 78.2
Msa1452080 AT1G08230.5 26.875 320 195 11 160 467 37 329 1.27e-15 78.2
Msa1452080 AT2G39890.2 23.741 417 274 14 55 467 63 439 1.61e-15 79.0
Msa1452080 AT2G39890.1 23.741 417 274 14 55 467 63 439 1.61e-15 79.0
Msa1452080 AT2G39890.3 23.741 417 274 14 55 467 4 380 2.82e-15 77.8
Msa1452080 AT2G36590.1 22.043 372 250 10 55 424 57 390 3.03e-13 72.0
Msa1452080 AT4G35180.1 24.722 449 254 17 19 432 42 441 5.43e-12 68.2

Find 133 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCTGGTTGGTTGCTTT+GGG 0.120510 tig0033660:+5555 Msa1452080:CDS
AATGTTAACTTATGGAAATT+TGG 0.155373 tig0033660:-4901 Msa1452080:intergenic
TCAACTTATTTAGACTAATT+TGG 0.167184 tig0033660:+5837 Msa1452080:CDS
TGCTTGGAGCATTTGGATTT+TGG 0.172242 tig0033660:+5930 Msa1452080:CDS
TATCAGAAGAAGACAAAATT+TGG 0.185241 tig0033660:+5186 Msa1452080:CDS
GCCCTTCTGGTTGGTTGCTT+TGG 0.204187 tig0033660:+5554 Msa1452080:CDS
TTTCTCATCTGTGTGCTTTC+CGG 0.236560 tig0033660:-5411 Msa1452080:intergenic
GGGAACATCCTCACTGGTTT+TGG 0.241475 tig0033660:+5522 Msa1452080:CDS
AATCTGAATCTTTATCTAAA+TGG 0.241916 tig0033660:+3259 Msa1452080:exon
AATCCTTACATGCTCGGTTT+TGG 0.247257 tig0033660:+4850 Msa1452080:CDS
CTTGCATTGCTTGGAGCATT+TGG 0.251558 tig0033660:+5923 Msa1452080:CDS
AGGAGGCCCATCATATTTAA+TGG 0.259641 tig0033660:-3060 Msa1452080:intergenic
TTGATATCAATGTTAACTTA+TGG 0.271388 tig0033660:-4909 Msa1452080:intergenic
AAAACTTGCAATAAGCTTCA+TGG 0.288812 tig0033660:-4822 Msa1452080:intergenic
ATTTATTTACCATTGGATTA+AGG 0.297831 tig0033660:-3080 Msa1452080:intergenic
ATGTTAACTTATGGAAATTT+GGG 0.301767 tig0033660:-4900 Msa1452080:intergenic
GAGGACAATATTTGTGATAA+TGG 0.301794 tig0033660:+5859 Msa1452080:CDS
GGAGAAAGAACCAGTTTGTT+TGG 0.303768 tig0033660:+5143 Msa1452080:CDS
GCGTGTTCAGACGTAATAAT+TGG 0.308562 tig0033660:-6291 Msa1452080:intergenic
ATTTCAACTATACGAAATAT+TGG 0.312065 tig0033660:-5734 Msa1452080:intergenic
GAGGAACACCCAAACAAAAT+TGG 0.316656 tig0033660:+5797 Msa1452080:CDS
CCATATGGTAGGAGCATATC+AGG 0.321505 tig0033660:+5596 Msa1452080:CDS
GTTGCTGCAATTACCTCTTT+TGG 0.324708 tig0033660:+4934 Msa1452080:CDS
TGGTTTGAAACATGTTGATT+AGG 0.325618 tig0033660:+3018 Msa1452080:five_prime_UTR
AATATTTCGTATAGTTGAAA+TGG 0.334003 tig0033660:+5736 Msa1452080:CDS
GCTGCAGTTGGTTCCATTCA+TGG 0.337754 tig0033660:+6073 Msa1452080:CDS
AGACACGATATTTGTATGTT+TGG 0.339654 tig0033660:+2990 Msa1452080:five_prime_UTR
ATCCTCCATTGTGGTTTGTT+AGG 0.343459 tig0033660:-2809 Msa1452080:intergenic
CTCTTGCCATTAACCGAGTC+TGG 0.346028 tig0033660:-4108 Msa1452080:intergenic
AACAATAGCCTATTTCAAAA+TGG 0.348097 tig0033660:+6137 Msa1452080:exon
AACGAGTTTCTTGCATTGCT+TGG 0.351193 tig0033660:+5914 Msa1452080:CDS
AGATATCCAGACTCGGTTAA+TGG 0.352529 tig0033660:+4102 Msa1452080:CDS
TCACTTGGCTATGCTGCATT+TGG 0.358697 tig0033660:+5486 Msa1452080:CDS
TATCTAAATGGAGGCTGAAA+AGG 0.368758 tig0033660:+3271 Msa1452080:exon
TACTGTTGTCTATGATATAA+TGG 0.373164 tig0033660:+5256 Msa1452080:CDS
ATGAGAAAGGCAAATGTGTT+GGG 0.381443 tig0033660:+5426 Msa1452080:CDS
ATTGTAAGTGTAAATAGAAA+TGG 0.388984 tig0033660:-4061 Msa1452080:intergenic
TACTTTGGTTCCAAACAAAC+TGG 0.405444 tig0033660:-5153 Msa1452080:intergenic
CTCTGTGAATGTGGTCCTCA+TGG 0.411554 tig0033660:-2894 Msa1452080:intergenic
ATTCTTACTAATTCCATGAA+TGG 0.418096 tig0033660:-6086 Msa1452080:intergenic
ATCCCAAAACCGAGCATGTA+AGG 0.421442 tig0033660:-4853 Msa1452080:intergenic
TCTCTAGCAGTTGTGGTGTC+AGG 0.423733 tig0033660:+4982 Msa1452080:CDS
TGATAACCTTGGTCCTACTT+TGG 0.426891 tig0033660:-5168 Msa1452080:intergenic
AAGTGTTCCATTAAATATGA+TGG 0.436874 tig0033660:+3053 Msa1452080:five_prime_UTR
CCTGATATGCTCCTACCATA+TGG 0.439103 tig0033660:-5596 Msa1452080:intergenic
GGTGGTGGGTGCAGGAGTGT+TGG 0.440169 tig0033660:+3972 Msa1452080:CDS
TCAAATAATCCTTACATGCT+CGG 0.443237 tig0033660:+4844 Msa1452080:CDS
CAGGAGTGTTGGCTCTAGCA+TGG 0.444476 tig0033660:+3983 Msa1452080:CDS
AACAAACAAGACTCAATAGT+TGG 0.446187 tig0033660:-6033 Msa1452080:intergenic
TTCCTCCTATGTGGTTCACT+TGG 0.448096 tig0033660:+5471 Msa1452080:CDS
GCATTTGGTGATCACACTCC+AGG 0.452200 tig0033660:+5501 Msa1452080:CDS
CTACTTACCTCGTGATAATA+CGG 0.455952 tig0033660:+2750 None:intergenic
ATAACAGTGGTGGTGGGTGC+AGG 0.463122 tig0033660:+3964 Msa1452080:CDS
GGTTATGCATTAATTGGAAG+TGG 0.469904 tig0033660:+4955 Msa1452080:CDS
ATATTTCGTATAGTTGAAAT+GGG 0.469932 tig0033660:+5737 Msa1452080:CDS
GAGAGATGTGCATTTGTATC+GGG 0.470377 tig0033660:-5970 Msa1452080:intergenic
TGAGAGATGTGCATTTGTAT+CGG 0.473205 tig0033660:-5971 Msa1452080:intergenic
AGTTTGTTTGGAACCAAAGT+AGG 0.474169 tig0033660:+5155 Msa1452080:CDS
ATTCAGTATGGGAAACTCGC+TGG 0.477343 tig0033660:+4406 Msa1452080:CDS
TGTATGCATTATAGTCCATA+TGG 0.479211 tig0033660:+5581 Msa1452080:CDS
GATGGAAGAATCAAGAGAAC+CGG 0.479976 tig0033660:+3335 Msa1452080:CDS
ATCTAAATGGAGGCTGAAAA+GGG 0.484463 tig0033660:+3272 Msa1452080:exon
GCGTTCATCTTTCATAAATG+AGG 0.484830 tig0033660:+5778 Msa1452080:CDS
CCTTCTGGTTGGTTGCTTTG+GGG 0.485026 tig0033660:+5556 Msa1452080:CDS
GTTTCAGTAGCTGCTGCAGT+TGG 0.487316 tig0033660:+6061 Msa1452080:CDS
CTCATCTGTGTGCTTTCCGG+TGG 0.491821 tig0033660:-5408 Msa1452080:intergenic
GCAAGAAACTCGTTGAAGAA+TGG 0.506573 tig0033660:-5905 Msa1452080:intergenic
CCCCTCCTTCTCTGTGAATG+TGG 0.510009 tig0033660:-2903 Msa1452080:intergenic
AATTAATGCATAACCAAAAG+AGG 0.512333 tig0033660:-4947 Msa1452080:intergenic
ACAGTACTCAAATGAGGAAG+TGG 0.516285 tig0033660:+3307 Msa1452080:CDS
GATGAGAAAGGCAAATGTGT+TGG 0.517908 tig0033660:+5425 Msa1452080:CDS
TTGGAAATTCTAAAATAACT+TGG 0.519238 tig0033660:-6272 Msa1452080:intergenic
TTGTCTTCTTCTGATAACCT+TGG 0.523957 tig0033660:-5179 Msa1452080:intergenic
TGGACTCTCTCTAGCAGTTG+TGG 0.531790 tig0033660:+4975 Msa1452080:CDS
GAGAAATTACACTTATATGC+AGG 0.536730 tig0033660:+4128 Msa1452080:CDS
TTCAGTATGGGAAACTCGCT+GGG 0.539810 tig0033660:+4407 Msa1452080:CDS
GCATGGGCAATTTCTCAACT+AGG 0.542467 tig0033660:+4000 Msa1452080:CDS
AATGAGGAAGTGGATGATGA+TGG 0.542692 tig0033660:+3317 Msa1452080:CDS
TCTCAACTAGGATGGATAGC+TGG 0.542950 tig0033660:+4012 Msa1452080:CDS
ACACATAATAACAGTGGTGG+TGG 0.543885 tig0033660:+3957 Msa1452080:CDS
ACTTATTTAGACTAATTTGG+AGG 0.544065 tig0033660:+5840 Msa1452080:CDS
GAAATTCTAAAATAACTTGG+TGG 0.544940 tig0033660:-6269 Msa1452080:intergenic
TTTGTGGATTGATTCAGTAT+GGG 0.545041 tig0033660:+4395 Msa1452080:CDS
AGTGTTCCATTAAATATGAT+GGG 0.545983 tig0033660:+3054 Msa1452080:five_prime_UTR
ACATGAGCTACAATAACTCT+AGG 0.559577 tig0033660:-6162 Msa1452080:intergenic
CCCCAAAGCAACCAACCAGA+AGG 0.561618 tig0033660:-5556 Msa1452080:intergenic
GGGCAATTTCTCAACTAGGA+TGG 0.565746 tig0033660:+4004 Msa1452080:CDS
GGAAAGCACACAGATGAGAA+AGG 0.569880 tig0033660:+5413 Msa1452080:CDS
TATCAAACAGTACTCAAATG+AGG 0.572155 tig0033660:+3301 Msa1452080:CDS
AAACCAGTGAGGATGTTCCC+TGG 0.577786 tig0033660:-5519 Msa1452080:intergenic
TATACCTAGGTAAGCATGAA+CGG 0.581147 tig0033660:-4151 Msa1452080:intergenic
CACATTAAAGTCAAATCCAC+CGG 0.582623 tig0033660:+5392 Msa1452080:CDS
GGTTGCAGGGAACGTGTTGA+CGG 0.584738 tig0033660:+3927 Msa1452080:intron
GATGGGCCTCCTTAATCCAA+TGG 0.586015 tig0033660:+3071 Msa1452080:five_prime_UTR
TTTGAGACAATAAAATCTGA+AGG 0.587153 tig0033660:-4876 Msa1452080:intergenic
TATTTACCATTGGATTAAGG+AGG 0.589677 tig0033660:-3077 Msa1452080:intergenic
CCACATTCACAGAGAAGGAG+GGG 0.590667 tig0033660:+2903 Msa1452080:five_prime_UTR
AGGAGTGTTGGCTCTAGCAT+GGG 0.591346 tig0033660:+3984 Msa1452080:CDS
GACGTACGATATTGCTGCAA+CGG 0.593413 tig0033660:+2928 Msa1452080:five_prime_UTR
GACCACATTCACAGAGAAGG+AGG 0.593717 tig0033660:+2901 Msa1452080:five_prime_UTR
CTGAATCTTTATCTAAATGG+AGG 0.596128 tig0033660:+3262 Msa1452080:exon
CACATAATAACAGTGGTGGT+GGG 0.606869 tig0033660:+3958 Msa1452080:CDS
ACTCCAGGGAACATCCTCAC+TGG 0.606948 tig0033660:+5516 Msa1452080:CDS
TATAACTTGCTCTACAAGCA+TGG 0.608733 tig0033660:+4447 Msa1452080:CDS
CATAGCCAAGTGAACCACAT+AGG 0.609497 tig0033660:-5476 Msa1452080:intergenic
AAACTCGCTGGGATTACAGT+GGG 0.611394 tig0033660:+4418 Msa1452080:CDS
AGCCAAGTGAACCACATAGG+AGG 0.616311 tig0033660:-5473 Msa1452080:intergenic
CCCAAAGCAACCAACCAGAA+GGG 0.617292 tig0033660:-5555 Msa1452080:intergenic
CAGGCCGTTCATGCTTACCT+AGG 0.625589 tig0033660:+4147 Msa1452080:CDS
AATGGCCACAGTTATTGCCA+TGG 0.626509 tig0033660:+5877 Msa1452080:CDS
GTTGAAGAATGGCATTGCCA+TGG 0.631337 tig0033660:-5894 Msa1452080:intergenic
AAATGGGTGCCAACATGATG+TGG 0.632507 tig0033660:+5753 Msa1452080:CDS
TGAGAAAGGCAAATGTGTTG+GGG 0.635338 tig0033660:+5427 Msa1452080:CDS
ACCACATTCACAGAGAAGGA+GGG 0.638958 tig0033660:+2902 Msa1452080:five_prime_UTR
TTGGAACCAAAGTAGGACCA+AGG 0.639180 tig0033660:+5162 Msa1452080:CDS
TGAACGCGGCCACATCATGT+TGG 0.643082 tig0033660:-5762 Msa1452080:intergenic
TGCATTATAGTCCATATGGT+AGG 0.648433 tig0033660:+5585 Msa1452080:CDS
ATCGGGAAGAAGACAATGAG+TGG 0.651715 tig0033660:-5953 Msa1452080:intergenic
CATTTGGTGATCACACTCCA+GGG 0.652654 tig0033660:+5502 Msa1452080:CDS
GAGGACCACATTCACAGAGA+AGG 0.652981 tig0033660:+2898 Msa1452080:five_prime_UTR
CGGAGTATATGCACCACATG+TGG 0.658429 tig0033660:+2770 Msa1452080:five_prime_UTR
TTGTTATAGATATCCAGACT+CGG 0.668178 tig0033660:+4095 Msa1452080:CDS
CATAAAATCCAAAACCAGTG+AGG 0.669591 tig0033660:-5530 Msa1452080:intergenic
AACACACATAATAACAGTGG+TGG 0.670192 tig0033660:+3954 Msa1452080:CDS
CACCTAACAAACCACAATGG+AGG 0.674924 tig0033660:+2807 Msa1452080:five_prime_UTR
CACATTCACAGAGAAGGAGG+GGG 0.675581 tig0033660:+2904 Msa1452080:five_prime_UTR
GAAACTCGCTGGGATTACAG+TGG 0.694611 tig0033660:+4417 Msa1452080:CDS
AACAACACACATAATAACAG+TGG 0.695542 tig0033660:+3951 Msa1452080:CDS
AGAATTTGTTAGACCACATG+TGG 0.702828 tig0033660:-2783 Msa1452080:intergenic
CATTGCCATGGCAATAACTG+TGG 0.713530 tig0033660:-5882 Msa1452080:intergenic
CTGCACCTAACAAACCACAA+TGG 0.736218 tig0033660:+2804 Msa1452080:five_prime_UTR
TCATTTATGAAAGATGAACG+CGG 0.742748 tig0033660:-5776 Msa1452070:intergenic
ATATACTCCGTATTATCACG+AGG 0.749564 tig0033660:-2757 Msa1452070:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTATTTATATTAATTTTTG+TGG + tig0033660:3686-3705 Msa1452080:intron 10.0%
!!! CTATTTATATTAATTTTTGT+GGG + tig0033660:3687-3706 Msa1452080:intron 10.0%
!!! TATTTATATTAATTTTTGTG+GGG + tig0033660:3688-3707 Msa1452080:intron 10.0%
!! AATATATTTGATGTATTTAA+TGG + tig0033660:3876-3895 Msa1452080:intron 10.0%
!! TAAAAAAAAAAACACAATGA+AGG + tig0033660:2845-2864 Msa1452080:five_prime_UTR 15.0%
!! TTACAATATTTATTTACCAT+TGG - tig0033660:3090-3109 Msa1452080:intergenic 15.0%
!!! TTTTATTGCAAAAAAAGAAA+AGG - tig0033660:3662-3681 Msa1452080:intergenic 15.0%
!!! TTTTCTTTTTTTGCAATAAA+AGG + tig0033660:3661-3680 Msa1452080:intron 15.0%
!! ATGTATTTAATGGAAATAAT+TGG + tig0033660:3886-3905 Msa1452080:intron 15.0%
!!! ATTTGTTGTTAATATTTTGT+TGG - tig0033660:5033-5052 Msa1452080:intergenic 15.0%
!! TTTCATAATTATCCAATAAT+TGG - tig0033660:5059-5078 Msa1452080:intergenic 15.0%
!!! TCTAATCTATGTTTTTATTT+AGG + tig0033660:5368-5387 Msa1452080:intron 15.0%
!!! ATTTTGCTTTCATAGTTTTT+TGG + tig0033660:2954-2973 Msa1452080:five_prime_UTR 20.0%
!! ATTTATTTACCATTGGATTA+AGG - tig0033660:3083-3102 Msa1452080:intergenic 20.0%
!!! TTAGTTAATTAATTTGAGAG+TGG + tig0033660:3235-3254 Msa1452080:intron 20.0%
!! AATCTGAATCTTTATCTAAA+TGG + tig0033660:3259-3278 Msa1452080:exon 20.0%
!! AACACATGAATTATATGAAA+AGG - tig0033660:3421-3440 Msa1452080:intergenic 20.0%
!! TAAAAGAAAACATCTTTCAA+AGG - tig0033660:3503-3522 Msa1452080:intergenic 20.0%
!! AAATTGACAATTTCAATAGA+TGG - tig0033660:3566-3585 Msa1452080:intergenic 20.0%
!! AATGATAGCATTAGTTAATA+TGG - tig0033660:3762-3781 Msa1452080:intergenic 20.0%
!! CATCAAATATATTATCTAAC+TGG - tig0033660:3869-3888 Msa1452080:intergenic 20.0%
!! ATTGTAAGTGTAAATAGAAA+TGG - tig0033660:4064-4083 Msa1452080:intergenic 20.0%
!! TGTATTTATGATATATACCT+AGG - tig0033660:4167-4186 Msa1452080:intergenic 20.0%
!!! TTCTATTAATCAATTTGTTG+AGG - tig0033660:4573-4592 Msa1452080:intergenic 20.0%
!! ATGTTAACTTATGGAAATTT+GGG - tig0033660:4903-4922 Msa1452080:intergenic 20.0%
!! AATGTTAACTTATGGAAATT+TGG - tig0033660:4904-4923 Msa1452080:intergenic 20.0%
!! TTGATATCAATGTTAACTTA+TGG - tig0033660:4912-4931 Msa1452080:intergenic 20.0%
!! ACAACAAATATTCCAATTAT+TGG + tig0033660:5044-5063 Msa1452080:intron 20.0%
!! TTCCAATTATGTATTTACTA+AGG + tig0033660:5096-5115 Msa1452080:intron 20.0%
!! ATTTCAACTATACGAAATAT+TGG - tig0033660:5737-5756 Msa1452080:intergenic 20.0%
!! AATATTTCGTATAGTTGAAA+TGG + tig0033660:5736-5755 Msa1452080:CDS 20.0%
!! ATATTTCGTATAGTTGAAAT+GGG + tig0033660:5737-5756 Msa1452080:CDS 20.0%
!! TCAACTTATTTAGACTAATT+TGG + tig0033660:5837-5856 Msa1452080:CDS 20.0%
!!! TTGGAAATTCTAAAATAACT+TGG - tig0033660:6275-6294 Msa1452080:intergenic 20.0%
! AAAAAAAAAATCCTCCATTG+TGG - tig0033660:2821-2840 Msa1452080:intergenic 25.0%
! AATTAAGAAAAAACTCCATG+AGG + tig0033660:2879-2898 Msa1452080:five_prime_UTR 25.0%
!!! TATTTGTATGTTTGGTTTTC+TGG + tig0033660:2998-3017 Msa1452080:five_prime_UTR 25.0%
! AAGTGTTCCATTAAATATGA+TGG + tig0033660:3053-3072 Msa1452080:five_prime_UTR 25.0%
! AGTGTTCCATTAAATATGAT+GGG + tig0033660:3054-3073 Msa1452080:five_prime_UTR 25.0%
! ATGCATCAAAAACAAAATTG+AGG - tig0033660:3181-3200 Msa1452080:intergenic 25.0%
!!! CAATTTTGTTTTTGATGCAT+AGG + tig0033660:3181-3200 Msa1452080:intron 25.0%
! TGGAAATAATTGGATTTGAA+TGG + tig0033660:3896-3915 Msa1452080:intron 25.0%
!!! TTGATTAACCAGAGTATTTT+TGG + tig0033660:4484-4503 Msa1452080:intron 25.0%
!! TTTGAGACAATAAAATCTGA+AGG - tig0033660:4879-4898 Msa1452080:intergenic 25.0%
! AATTAATGCATAACCAAAAG+AGG - tig0033660:4950-4969 Msa1452080:intergenic 25.0%
!!! TCTTTTGGTTATGCATTAAT+TGG + tig0033660:4949-4968 Msa1452080:CDS 25.0%
! TGCCTTAGTAAATACATAAT+TGG - tig0033660:5101-5120 Msa1452080:intergenic 25.0%
!!! TGTATTTACTAAGGCATTTT+TGG + tig0033660:5105-5124 Msa1452080:intron 25.0%
! TATCAGAAGAAGACAAAATT+TGG + tig0033660:5186-5205 Msa1452080:CDS 25.0%
! TACTGTTGTCTATGATATAA+TGG + tig0033660:5256-5275 Msa1452080:CDS 25.0%
! GAAGTATAAAAAAGTAGACT+TGG + tig0033660:5304-5323 Msa1452080:intron 25.0%
! TAGAGATAACTGATATCAAT+GGG - tig0033660:5352-5371 Msa1452080:intergenic 25.0%
! TTAGAGATAACTGATATCAA+TGG - tig0033660:5353-5372 Msa1452080:intergenic 25.0%
! ACTTATTTAGACTAATTTGG+AGG + tig0033660:5840-5859 Msa1452080:CDS 25.0%
!! TAAACAGATTTTCATTGAAG+TGG + tig0033660:6002-6021 Msa1452080:CDS 25.0%
! ATTCTTACTAATTCCATGAA+TGG - tig0033660:6089-6108 Msa1452080:intergenic 25.0%
! AACAATAGCCTATTTCAAAA+TGG + tig0033660:6137-6156 Msa1452080:exon 25.0%
!!! GAAATTCTAAAATAACTTGG+TGG - tig0033660:6272-6291 Msa1452080:intergenic 25.0%
AGACACGATATTTGTATGTT+TGG + tig0033660:2990-3009 Msa1452080:five_prime_UTR 30.0%
! TGGTTTGAAACATGTTGATT+AGG + tig0033660:3018-3037 Msa1452080:five_prime_UTR 30.0%
TATTTACCATTGGATTAAGG+AGG - tig0033660:3080-3099 Msa1452080:intergenic 30.0%
CTGAATCTTTATCTAAATGG+AGG + tig0033660:3262-3281 Msa1452080:exon 30.0%
TATCAAACAGTACTCAAATG+AGG + tig0033660:3301-3320 Msa1452080:CDS 30.0%
GAAATGAAATGAATGCATAC+CGG - tig0033660:3357-3376 Msa1452080:intergenic 30.0%
! AAGGACATATGATTCTGAAA+TGG - tig0033660:3402-3421 Msa1452080:intergenic 30.0%
ACGTCATGAAAGAAAATAAG+AGG - tig0033660:3629-3648 Msa1452080:intergenic 30.0%
! TTTTCTTTCATGACGTCAAA+CGG + tig0033660:3633-3652 Msa1452080:intron 30.0%
GTTGAAGGAGTAATAGAATT+TGG + tig0033660:3718-3737 Msa1452080:intron 30.0%
AACAACACACATAATAACAG+TGG + tig0033660:3951-3970 Msa1452080:CDS 30.0%
TTGTTATAGATATCCAGACT+CGG + tig0033660:4095-4114 Msa1452080:CDS 30.0%
GAGAAATTACACTTATATGC+AGG + tig0033660:4128-4147 Msa1452080:CDS 30.0%
!! AGTACAATTTTAGCGTGAAT+CGG - tig0033660:4258-4277 Msa1452080:intergenic 30.0%
!! TTTAGCGTTGACAAAAATAG+TGG - tig0033660:4308-4327 Msa1452080:intergenic 30.0%
!! TTTTGTGGATTGATTCAGTA+TGG + tig0033660:4394-4413 Msa1452080:CDS 30.0%
! TTTGTGGATTGATTCAGTAT+GGG + tig0033660:4395-4414 Msa1452080:CDS 30.0%
!!! TTTTAGGACCAAAAATACTC+TGG - tig0033660:4495-4514 Msa1452080:intergenic 30.0%
TTGCAATTTCAATGCATTCA+AGG - tig0033660:4546-4565 Msa1452080:intergenic 30.0%
!! TTGATTTGCTTCCACAAAAA+TGG + tig0033660:4799-4818 Msa1452080:CDS 30.0%
AAAACTTGCAATAAGCTTCA+TGG - tig0033660:4825-4844 Msa1452080:intergenic 30.0%
TCAAATAATCCTTACATGCT+CGG + tig0033660:4844-4863 Msa1452080:CDS 30.0%
TGTATGCATTATAGTCCATA+TGG + tig0033660:5581-5600 Msa1452080:CDS 30.0%
GTATGTTGATATAATGTTGC+AGG + tig0033660:5700-5719 Msa1452080:intron 30.0%
TCATTTATGAAAGATGAACG+CGG - tig0033660:5779-5798 Msa1452080:intergenic 30.0%
!! TCAAAGAGCCAATTTTGTTT+GGG - tig0033660:5808-5827 Msa1452080:intergenic 30.0%
GAGGACAATATTTGTGATAA+TGG + tig0033660:5859-5878 Msa1452080:CDS 30.0%
AACAAACAAGACTCAATAGT+TGG - tig0033660:6036-6055 Msa1452080:intergenic 30.0%
!! AGAATTTGTTAGACCACATG+TGG - tig0033660:2786-2805 Msa1452080:intergenic 35.0%
ATTCCTTGTGCTTATTAGAG+AGG + tig0033660:3128-3147 Msa1452080:intron 35.0%
TTACCTCTCTAATAAGCACA+AGG - tig0033660:3134-3153 Msa1452080:intergenic 35.0%
! ATAGGCTCTAATTCTTGACA+GGG + tig0033660:3199-3218 Msa1452080:intron 35.0%
TATCTAAATGGAGGCTGAAA+AGG + tig0033660:3271-3290 Msa1452080:exon 35.0%
ATCTAAATGGAGGCTGAAAA+GGG + tig0033660:3272-3291 Msa1452080:exon 35.0%
AACACACATAATAACAGTGG+TGG + tig0033660:3954-3973 Msa1452080:CDS 35.0%
TATACCTAGGTAAGCATGAA+CGG - tig0033660:4154-4173 Msa1452080:intergenic 35.0%
!! GTACAATTTTAGCGTGAATC+GGG - tig0033660:4257-4276 Msa1452080:intergenic 35.0%
! TAGTTGCCCATTTTGTCATT+AGG + tig0033660:4355-4374 Msa1452080:intron 35.0%
GTTCCACCTAATGACAAAAT+GGG - tig0033660:4364-4383 Msa1452080:intergenic 35.0%
TGTTCCACCTAATGACAAAA+TGG - tig0033660:4365-4384 Msa1452080:intergenic 35.0%
! GGAACAATGCACATATTTTG+TGG + tig0033660:4379-4398 Msa1452080:CDS 35.0%
!! TATAACTTGCTCTACAAGCA+TGG + tig0033660:4447-4466 Msa1452080:CDS 35.0%
! CAACCTCACTCACATATTTT+AGG - tig0033660:4511-4530 Msa1452080:intergenic 35.0%
TGAGTGAGGTTGTATTATTG+TGG + tig0033660:4519-4538 Msa1452080:intron 35.0%
TGCCACATGTATAAATTAGG+GGG - tig0033660:4765-4784 Msa1452080:intergenic 35.0%
CTGCCACATGTATAAATTAG+GGG - tig0033660:4766-4785 Msa1452080:intergenic 35.0%
CCTGCCACATGTATAAATTA+GGG - tig0033660:4767-4786 Msa1452080:intergenic 35.0%
CCTAATTTATACATGTGGCA+GGG + tig0033660:4765-4784 Msa1452080:intron 35.0%
GGTTATGCATTAATTGGAAG+TGG + tig0033660:4955-4974 Msa1452080:CDS 35.0%
! TACTTTGGTTCCAAACAAAC+TGG - tig0033660:5156-5175 Msa1452080:intergenic 35.0%
! AGTTTGTTTGGAACCAAAGT+AGG + tig0033660:5155-5174 Msa1452080:CDS 35.0%
TTGTCTTCTTCTGATAACCT+TGG - tig0033660:5182-5201 Msa1452080:intergenic 35.0%
!!! TTGGAAAGTTTTGACTGCTT+TGG + tig0033660:5205-5224 Msa1452080:CDS 35.0%
!!! TGGAAAGTTTTGACTGCTTT+GGG + tig0033660:5206-5225 Msa1452080:CDS 35.0%
CACATTAAAGTCAAATCCAC+CGG + tig0033660:5392-5411 Msa1452080:CDS 35.0%
ATGAGAAAGGCAAATGTGTT+GGG + tig0033660:5426-5445 Msa1452080:CDS 35.0%
! ACAATACTTTTCCTCCTATG+TGG + tig0033660:5462-5481 Msa1452080:CDS 35.0%
CATAAAATCCAAAACCAGTG+AGG - tig0033660:5533-5552 Msa1452080:intergenic 35.0%
TGCATTATAGTCCATATGGT+AGG + tig0033660:5585-5604 Msa1452080:CDS 35.0%
GCGTTCATCTTTCATAAATG+AGG + tig0033660:5778-5797 Msa1452080:CDS 35.0%
! GTCAAAGAGCCAATTTTGTT+TGG - tig0033660:5809-5828 Msa1452080:intergenic 35.0%
TGAGAGATGTGCATTTGTAT+CGG - tig0033660:5974-5993 Msa1452080:intergenic 35.0%
!!! TCTAGGCTCCATTTTGAAAT+AGG - tig0033660:6148-6167 Msa1452080:intergenic 35.0%
ACATGAGCTACAATAACTCT+AGG - tig0033660:6165-6184 Msa1452080:intergenic 35.0%
!! ATCCTCCATTGTGGTTTGTT+AGG - tig0033660:2812-2831 Msa1452080:intergenic 40.0%
AGGAGGCCCATCATATTTAA+TGG - tig0033660:3063-3082 Msa1452080:intergenic 40.0%
! CATAGGCTCTAATTCTTGAC+AGG + tig0033660:3198-3217 Msa1452080:intron 40.0%
ACAGTACTCAAATGAGGAAG+TGG + tig0033660:3307-3326 Msa1452080:CDS 40.0%
AATGAGGAAGTGGATGATGA+TGG + tig0033660:3317-3336 Msa1452080:CDS 40.0%
GATGGAAGAATCAAGAGAAC+CGG + tig0033660:3335-3354 Msa1452080:CDS 40.0%
TGGATTTGAATGGATGCTTG+TGG + tig0033660:3906-3925 Msa1452080:intron 40.0%
ACACATAATAACAGTGGTGG+TGG + tig0033660:3957-3976 Msa1452080:CDS 40.0%
CACATAATAACAGTGGTGGT+GGG + tig0033660:3958-3977 Msa1452080:CDS 40.0%
! AGATATCCAGACTCGGTTAA+TGG + tig0033660:4102-4121 Msa1452080:CDS 40.0%
TCGCAATTAATCCCTCAAGT+CGG - tig0033660:4223-4242 Msa1452080:intergenic 40.0%
! TTGCCCATTTTGTCATTAGG+TGG + tig0033660:4358-4377 Msa1452080:intron 40.0%
GGTCCTAAAATATGTGAGTG+AGG + tig0033660:4505-4524 Msa1452080:intron 40.0%
ATGTATAAATTAGGGGGGGT+GGG - tig0033660:4759-4778 Msa1452080:intergenic 40.0%
CCACATGTATAAATTAGGGG+GGG - tig0033660:4763-4782 Msa1452080:intergenic 40.0%
GCCACATGTATAAATTAGGG+GGG - tig0033660:4764-4783 Msa1452080:intergenic 40.0%
CCCTAATTTATACATGTGGC+AGG + tig0033660:4764-4783 Msa1452080:intron 40.0%
CCCTGCCACATGTATAAATT+AGG - tig0033660:4768-4787 Msa1452080:intergenic 40.0%
!!! AAGCTTCATGGCCATTTTTG+TGG - tig0033660:4813-4832 Msa1452080:intergenic 40.0%
! AATCCTTACATGCTCGGTTT+TGG + tig0033660:4850-4869 Msa1452080:CDS 40.0%
! ATCCTTACATGCTCGGTTTT+GGG + tig0033660:4851-4870 Msa1452080:CDS 40.0%
! GTTGCTGCAATTACCTCTTT+TGG + tig0033660:4934-4953 Msa1452080:CDS 40.0%
TGGAAAGACACAAGTGATGA+AGG - tig0033660:5013-5032 Msa1452080:intergenic 40.0%
!!! AGGCATTTTTGGCTGTGAAT+AGG + tig0033660:5116-5135 Msa1452080:intron 40.0%
!!! GGCATTTTTGGCTGTGAATA+GGG + tig0033660:5117-5136 Msa1452080:intron 40.0%
!! TTTTGGCTGTGAATAGGGAA+AGG + tig0033660:5122-5141 Msa1452080:intron 40.0%
! GGAGAAAGAACCAGTTTGTT+TGG + tig0033660:5143-5162 Msa1452080:CDS 40.0%
TGATAACCTTGGTCCTACTT+TGG - tig0033660:5171-5190 Msa1452080:intergenic 40.0%
ACTGATATCAATGGGACTAG+TGG - tig0033660:5344-5363 Msa1452080:intergenic 40.0%
TTTCTCATCTGTGTGCTTTC+CGG - tig0033660:5414-5433 Msa1452080:intergenic 40.0%
GATGAGAAAGGCAAATGTGT+TGG + tig0033660:5425-5444 Msa1452080:CDS 40.0%
TGAGAAAGGCAAATGTGTTG+GGG + tig0033660:5427-5446 Msa1452080:CDS 40.0%
! TTGGATTTTATGAGCCCTTC+TGG + tig0033660:5541-5560 Msa1452080:CDS 40.0%
! ATTTTATGAGCCCTTCTGGT+TGG + tig0033660:5545-5564 Msa1452080:CDS 40.0%
GAGGAACACCCAAACAAAAT+TGG + tig0033660:5797-5816 Msa1452080:CDS 40.0%
GCAAGAAACTCGTTGAAGAA+TGG - tig0033660:5908-5927 Msa1452080:intergenic 40.0%
AACGAGTTTCTTGCATTGCT+TGG + tig0033660:5914-5933 Msa1452080:CDS 40.0%
!! TGCTTGGAGCATTTGGATTT+TGG + tig0033660:5930-5949 Msa1452080:CDS 40.0%
GAGAGATGTGCATTTGTATC+GGG - tig0033660:5973-5992 Msa1452080:intergenic 40.0%
CTGCACCTAACAAACCACAA+TGG + tig0033660:2804-2823 Msa1452080:five_prime_UTR 45.0%
CACCTAACAAACCACAATGG+AGG + tig0033660:2807-2826 Msa1452080:five_prime_UTR 45.0%
ACCACATTCACAGAGAAGGA+GGG + tig0033660:2902-2921 Msa1452080:five_prime_UTR 45.0%
GACGTACGATATTGCTGCAA+CGG + tig0033660:2928-2947 Msa1452080:five_prime_UTR 45.0%
! TTGTGGGGATTGTGAGTTGA+AGG + tig0033660:3703-3722 Msa1452080:intron 45.0%
AATGGATGCTTGTGGTTGCA+GGG + tig0033660:3914-3933 Msa1452080:intron 45.0%
GCATGGGCAATTTCTCAACT+AGG + tig0033660:4000-4019 Msa1452080:CDS 45.0%
GGGCAATTTCTCAACTAGGA+TGG + tig0033660:4004-4023 Msa1452080:CDS 45.0%
TCTCAACTAGGATGGATAGC+TGG + tig0033660:4012-4031 Msa1452080:CDS 45.0%
! TCCCACATTTATCCGACTTG+AGG + tig0033660:4208-4227 Msa1452080:intron 45.0%
CCCTCAAGTCGGATAAATGT+GGG - tig0033660:4212-4231 Msa1452080:intergenic 45.0%
! CCCACATTTATCCGACTTGA+GGG + tig0033660:4209-4228 Msa1452080:intron 45.0%
TCCCTCAAGTCGGATAAATG+TGG - tig0033660:4213-4232 Msa1452080:intergenic 45.0%
GACTTGAGGGATTAATTGCG+AGG + tig0033660:4222-4241 Msa1452080:intron 45.0%
ATTCAGTATGGGAAACTCGC+TGG + tig0033660:4406-4425 Msa1452080:CDS 45.0%
TTCAGTATGGGAAACTCGCT+GGG + tig0033660:4407-4426 Msa1452080:CDS 45.0%
AAACTCGCTGGGATTACAGT+GGG + tig0033660:4418-4437 Msa1452080:CDS 45.0%
TGTATAAATTAGGGGGGGTG+GGG - tig0033660:4758-4777 Msa1452080:intergenic 45.0%
CATGTATAAATTAGGGGGGG+TGG - tig0033660:4760-4779 Msa1452080:intergenic 45.0%
CCCCCCCTAATTTATACATG+TGG + tig0033660:4760-4779 Msa1452080:intron 45.0%
ATCCCAAAACCGAGCATGTA+AGG - tig0033660:4856-4875 Msa1452080:intergenic 45.0%
TTGGAACCAAAGTAGGACCA+AGG + tig0033660:5162-5181 Msa1452080:CDS 45.0%
! GGAAAGCACACAGATGAGAA+AGG + tig0033660:5413-5432 Msa1452080:CDS 45.0%
TTCCTCCTATGTGGTTCACT+TGG + tig0033660:5471-5490 Msa1452080:CDS 45.0%
CATAGCCAAGTGAACCACAT+AGG - tig0033660:5479-5498 Msa1452080:intergenic 45.0%
TCACTTGGCTATGCTGCATT+TGG + tig0033660:5486-5505 Msa1452080:CDS 45.0%
! CATTTGGTGATCACACTCCA+GGG + tig0033660:5502-5521 Msa1452080:CDS 45.0%
CCTGATATGCTCCTACCATA+TGG - tig0033660:5599-5618 Msa1452080:intergenic 45.0%
! CCATATGGTAGGAGCATATC+AGG + tig0033660:5596-5615 Msa1452080:CDS 45.0%
AAATGGGTGCCAACATGATG+TGG + tig0033660:5753-5772 Msa1452080:CDS 45.0%
AATGGCCACAGTTATTGCCA+TGG + tig0033660:5877-5896 Msa1452080:CDS 45.0%
CATTGCCATGGCAATAACTG+TGG - tig0033660:5885-5904 Msa1452080:intergenic 45.0%
GTTGAAGAATGGCATTGCCA+TGG - tig0033660:5897-5916 Msa1452080:intergenic 45.0%
! CTTGCATTGCTTGGAGCATT+TGG + tig0033660:5923-5942 Msa1452080:CDS 45.0%
ATCGGGAAGAAGACAATGAG+TGG - tig0033660:5956-5975 Msa1452080:intergenic 45.0%
!!! TCTTTTAAAATAATTTATTT+TGG + tig0033660:3516-3535 Msa1452080:intron 5.0%
CGGAGTATATGCACCACATG+TGG + tig0033660:2770-2789 Msa1452080:five_prime_UTR 50.0%
CTCTGTGAATGTGGTCCTCA+TGG - tig0033660:2897-2916 Msa1452080:intergenic 50.0%
GAGGACCACATTCACAGAGA+AGG + tig0033660:2898-2917 Msa1452080:five_prime_UTR 50.0%
GACCACATTCACAGAGAAGG+AGG + tig0033660:2901-2920 Msa1452080:five_prime_UTR 50.0%
CCACATTCACAGAGAAGGAG+GGG + tig0033660:2903-2922 Msa1452080:five_prime_UTR 50.0%
CACATTCACAGAGAAGGAGG+GGG + tig0033660:2904-2923 Msa1452080:five_prime_UTR 50.0%
GATGGGCCTCCTTAATCCAA+TGG + tig0033660:3071-3090 Msa1452080:five_prime_UTR 50.0%
GAATGGATGCTTGTGGTTGC+AGG + tig0033660:3913-3932 Msa1452080:intron 50.0%
!! AGGAGTGTTGGCTCTAGCAT+GGG + tig0033660:3984-4003 Msa1452080:CDS 50.0%
CTCTTGCCATTAACCGAGTC+TGG - tig0033660:4111-4130 Msa1452080:intergenic 50.0%
GAAACTCGCTGGGATTACAG+TGG + tig0033660:4417-4436 Msa1452080:CDS 50.0%
TGGACTCTCTCTAGCAGTTG+TGG + tig0033660:4975-4994 Msa1452080:CDS 50.0%
TCTCTAGCAGTTGTGGTGTC+AGG + tig0033660:4982-5001 Msa1452080:CDS 50.0%
AGCCAAGTGAACCACATAGG+AGG - tig0033660:5476-5495 Msa1452080:intergenic 50.0%
! GCATTTGGTGATCACACTCC+AGG + tig0033660:5501-5520 Msa1452080:CDS 50.0%
AAACCAGTGAGGATGTTCCC+TGG - tig0033660:5522-5541 Msa1452080:intergenic 50.0%
!!! GGGAACATCCTCACTGGTTT+TGG + tig0033660:5522-5541 Msa1452080:CDS 50.0%
CCCAAAGCAACCAACCAGAA+GGG - tig0033660:5558-5577 Msa1452080:intergenic 50.0%
! CCCTTCTGGTTGGTTGCTTT+GGG + tig0033660:5555-5574 Msa1452080:CDS 50.0%
! CCTTCTGGTTGGTTGCTTTG+GGG + tig0033660:5556-5575 Msa1452080:CDS 50.0%
GTTTCAGTAGCTGCTGCAGT+TGG + tig0033660:6061-6080 Msa1452080:CDS 50.0%
! GCTGCAGTTGGTTCCATTCA+TGG + tig0033660:6073-6092 Msa1452080:CDS 50.0%
CCCCTCCTTCTCTGTGAATG+TGG - tig0033660:2906-2925 Msa1452080:intergenic 55.0%
GGTTGCAGGGAACGTGTTGA+CGG + tig0033660:3927-3946 Msa1452080:intron 55.0%
!! ATAACAGTGGTGGTGGGTGC+AGG + tig0033660:3964-3983 Msa1452080:CDS 55.0%
!! CAGGAGTGTTGGCTCTAGCA+TGG + tig0033660:3983-4002 Msa1452080:CDS 55.0%
CAGGCCGTTCATGCTTACCT+AGG + tig0033660:4147-4166 Msa1452080:CDS 55.0%
CTCATCTGTGTGCTTTCCGG+TGG - tig0033660:5411-5430 Msa1452080:intergenic 55.0%
ACTCCAGGGAACATCCTCAC+TGG + tig0033660:5516-5535 Msa1452080:CDS 55.0%
! GCCCTTCTGGTTGGTTGCTT+TGG + tig0033660:5554-5573 Msa1452080:CDS 55.0%
CCCCAAAGCAACCAACCAGA+AGG - tig0033660:5559-5578 Msa1452080:intergenic 55.0%
TGAACGCGGCCACATCATGT+TGG - tig0033660:5765-5784 Msa1452080:intergenic 55.0%
!! GGTGGTGGGTGCAGGAGTGT+TGG + tig0033660:3972-3991 Msa1452080:CDS 65.0%
ATTAGGGGGGGTGGGGTGAG+CGG - tig0033660:4751-4770 Msa1452080:intergenic 65.0%
TTAGGGGGGGTGGGGTGAGC+GGG - tig0033660:4750-4769 Msa1452080:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0033660 gene 2759 6306 2759 ID=Msa1452080;Name=Msa1452080
tig0033660 mRNA 2759 6306 2759 ID=Msa1452080-mRNA-1;Parent=Msa1452080;Name=Msa1452080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=393|1|1|1|0.75|0.66|9|162|471
tig0033660 exon 2759 3092 2759 ID=Msa1452080-mRNA-1:exon:18386;Parent=Msa1452080-mRNA-1
tig0033660 exon 3184 3215 3184 ID=Msa1452080-mRNA-1:exon:18387;Parent=Msa1452080-mRNA-1
tig0033660 exon 3251 3356 3251 ID=Msa1452080-mRNA-1:exon:18388;Parent=Msa1452080-mRNA-1
tig0033660 exon 3935 4168 3935 ID=Msa1452080-mRNA-1:exon:18389;Parent=Msa1452080-mRNA-1
tig0033660 exon 4377 4470 4377 ID=Msa1452080-mRNA-1:exon:18390;Parent=Msa1452080-mRNA-1
tig0033660 exon 4786 5003 4786 ID=Msa1452080-mRNA-1:exon:18391;Parent=Msa1452080-mRNA-1
tig0033660 exon 5138 5277 5138 ID=Msa1452080-mRNA-1:exon:18392;Parent=Msa1452080-mRNA-1
tig0033660 exon 5390 5617 5390 ID=Msa1452080-mRNA-1:exon:18393;Parent=Msa1452080-mRNA-1
tig0033660 exon 5722 6306 5722 ID=Msa1452080-mRNA-1:exon:18394;Parent=Msa1452080-mRNA-1
tig0033660 five_prime_UTR 2759 3092 2759 ID=Msa1452080-mRNA-1:five_prime_utr;Parent=Msa1452080-mRNA-1
tig0033660 five_prime_UTR 3184 3215 3184 ID=Msa1452080-mRNA-1:five_prime_utr;Parent=Msa1452080-mRNA-1
tig0033660 five_prime_UTR 3251 3277 3251 ID=Msa1452080-mRNA-1:five_prime_utr;Parent=Msa1452080-mRNA-1
tig0033660 CDS 3278 3356 3278 ID=Msa1452080-mRNA-1:cds;Parent=Msa1452080-mRNA-1
tig0033660 CDS 3935 4168 3935 ID=Msa1452080-mRNA-1:cds;Parent=Msa1452080-mRNA-1
tig0033660 CDS 4377 4470 4377 ID=Msa1452080-mRNA-1:cds;Parent=Msa1452080-mRNA-1
tig0033660 CDS 4786 5003 4786 ID=Msa1452080-mRNA-1:cds;Parent=Msa1452080-mRNA-1
tig0033660 CDS 5138 5277 5138 ID=Msa1452080-mRNA-1:cds;Parent=Msa1452080-mRNA-1
tig0033660 CDS 5390 5617 5390 ID=Msa1452080-mRNA-1:cds;Parent=Msa1452080-mRNA-1
tig0033660 CDS 5722 6144 5722 ID=Msa1452080-mRNA-1:cds;Parent=Msa1452080-mRNA-1
tig0033660 three_prime_UTR 6145 6306 6145 ID=Msa1452080-mRNA-1:three_prime_utr;Parent=Msa1452080-mRNA-1
Gene Sequence

>Msa1452080

ATGGAGGCTGAAAAGGGTGTGTCTATCAAACAGTACTCAAATGAGGAAGTGGATGATGATGGAAGAATCAAGAGAACCGGGAACGTGTTGACGGCAACAACACACATAATAACAGTGGTGGTGGGTGCAGGAGTGTTGGCTCTAGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGCATACTTGTTATGATCACATTTTCATCCATTTCTATTTACACTTACAATCTTATAGCTGATTGTTATAGATATCCAGACTCGGTTAATGGCAAGAGAAATTACACTTATATGCAGGCCGTTCATGCTTACCTAGGTGGAACAATGCACATATTTTGTGGATTGATTCAGTATGGGAAACTCGCTGGGATTACAGTGGGCTACACTATAACTTGCTCTACAAGCATGGTGGCTATAAAGAAATTGATTTGCTTCCACAAAAATGGCCATGAAGCTTATTGCAAGTTTTCAAATAATCCTTACATGCTCGGTTTTGGGATCCTTCAGATTTTATTGTCTCAAATCCCAAATTTCCATAAGTTAACATTGATATCAACTGTTGCTGCAATTACCTCTTTTGGTTATGCATTAATTGGAAGTGGACTCTCTCTAGCAGTTGTGGTGTCAGGGAAAGGAGAAAGAACCAGTTTGTTTGGAACCAAAGTAGGACCAAGGTTATCAGAAGAAGACAAAATTTGGAAAGTTTTGACTGCTTTGGGAAACATTGCACTTGCTTGCTCTTATGCTACTGTTGTCTATGATATAATGGACACATTAAAGTCAAATCCACCGGAAAGCACACAGATGAGAAAGGCAAATGTGTTGGGGATCACTACAATGACAATACTTTTCCTCCTATGTGGTTCACTTGGCTATGCTGCATTTGGTGATCACACTCCAGGGAACATCCTCACTGGTTTTGGATTTTATGAGCCCTTCTGGTTGGTTGCTTTGGGGAATGTATGCATTATAGTCCATATGGTAGGAGCATATCAGGTGTTAGCTCAGCCAATATTTCGTATAGTTGAAATGGGTGCCAACATGATGTGGCCGCGTTCATCTTTCATAAATGAGGAACACCCAAACAAAATTGGCTCTTTGACATTCAACATCAACTTATTTAGACTAATTTGGAGGACAATATTTGTGATAATGGCCACAGTTATTGCCATGGCAATGCCATTCTTCAACGAGTTTCTTGCATTGCTTGGAGCATTTGGATTTTGGCCACTCATTGTCTTCTTCCCGATACAAATGCACATCTCTCAGAAACATATAAACAGATTTTCATTGAAGTGGTGTGTGCTCCAACTATTGAGTCTTGTTTGTTTTTTTGTTTCAGTAGCTGCTGCAGTTGGTTCCATTCATGGAATTAGTAAGAATATCACAAAATACAAACTCTTCATGTATAAACAATAG

Protein sequence

>Msa1452080

MEAEKGVSIKQYSNEEVDDDGRIKRTGNVLTATTHIITVVVGAGVLALAWAISQLGWIAGILVMITFSSISIYTYNLIADCYRYPDSVNGKRNYTYMQAVHAYLGGTMHIFCGLIQYGKLAGITVGYTITCSTSMVAIKKLICFHKNGHEAYCKFSNNPYMLGFGILQILLSQIPNFHKLTLISTVAAITSFGYALIGSGLSLAVVVSGKGERTSLFGTKVGPRLSEEDKIWKVLTALGNIALACSYATVVYDIMDTLKSNPPESTQMRKANVLGITTMTILFLLCGSLGYAAFGDHTPGNILTGFGFYEPFWLVALGNVCIIVHMVGAYQVLAQPIFRIVEMGANMMWPRSSFINEEHPNKIGSLTFNINLFRLIWRTIFVIMATVIAMAMPFFNEFLALLGAFGFWPLIVFFPIQMHISQKHINRFSLKWCVLQLLSLVCFFVSVAAAVGSIHGISKNITKYKLFMYKQ*