AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0487480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487480 MtrunA17_Chr3g0078481 89.568 278 15 2 1 264 106 383 1.53e-170 476
Msa0487480 MtrunA17_Chr3g0114921 67.636 275 72 4 1 259 170 443 2.35e-127 369
Msa0487480 MtrunA17_Chr3g0114931 62.094 277 83 6 1 261 169 439 2.71e-101 302
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487480 AT2G41705.3 58.519 270 101 3 1 259 187 456 3.30e-96 290
Msa0487480 AT2G41705.2 58.519 270 101 3 1 259 187 456 3.30e-96 290
Msa0487480 AT2G41705.4 58.519 270 101 3 1 259 187 456 3.30e-96 290
Msa0487480 AT2G41705.1 58.519 270 101 3 1 259 187 456 3.30e-96 290

Find 79 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATACTGTGTGCCTATT+TGG 0.130972 3_4:-6382851 Msa0487480:CDS
TAAAGAATTGCCAAAGTTAT+TGG 0.149331 3_4:-6386224 Msa0487480:five_prime_UTR
TATACTCTGGACAAGTTATT+TGG 0.181887 3_4:-6385365 Msa0487480:five_prime_UTR
GTTTCAAGTGGCTTCTTATA+AGG 0.252360 3_4:-6383990 Msa0487480:CDS
GCTAAACTTGACTTCTTATA+AGG 0.264542 3_4:-6383968 Msa0487480:CDS
CTCTTGGTGTGTGGATTAGA+TGG 0.264943 3_4:-6383813 Msa0487480:CDS
AATTCATCCATTCTCCAAAT+AGG 0.275234 3_4:+6382837 None:intergenic
CACGACAATATTACCTTCTA+TGG 0.281497 3_4:+6382799 None:intergenic
TGCTTCATATTTGATTCATT+TGG 0.285021 3_4:-6386197 Msa0487480:five_prime_UTR
ATGCTTGAACTCAGTGTTAC+TGG 0.290373 3_4:-6384753 Msa0487480:CDS
CCTTGACCTTCCTTCTAATA+TGG 0.294484 3_4:-6385300 Msa0487480:intron
GATTGTGATACTATTGTAAA+AGG 0.321077 3_4:-6383017 Msa0487480:CDS
GTTCTGCTTGGCTTTCTAAT+AGG 0.329498 3_4:-6384717 Msa0487480:intron
CTAATCCGTGTCCATTTAAT+CGG 0.336275 3_4:+6383782 None:intergenic
GGACATTTGTTCAGATGTTA+AGG 0.336499 3_4:+6386554 None:intergenic
CGATTAAATGGACACGGATT+AGG 0.337074 3_4:-6383781 Msa0487480:CDS
CACTAACAACTGGTTACTTT+GGG 0.340135 3_4:-6384809 Msa0487480:CDS
ATCAAATGTGTCCAAGTATC+TGG 0.347261 3_4:-6384838 Msa0487480:CDS
GGCTTGTTATGGGGTATTAG+TGG 0.347642 3_4:-6383904 Msa0487480:CDS
AACTCAGTGTTACTGGGAAT+TGG 0.357866 3_4:-6384746 Msa0487480:CDS
ATGGATGAATTATAAATTCC+AGG 0.370019 3_4:-6382825 Msa0487480:exon
TAACTTGTCCAGAGTATATC+AGG 0.372054 3_4:+6385370 None:intergenic
AATTGGCTCTTTGTTCTGCT+TGG 0.375385 3_4:-6384729 Msa0487480:CDS
ATTCATTATATCACATGAAA+TGG 0.379563 3_4:-6386646 Msa0487480:five_prime_UTR
ATTGTAAAAGGCATACAGTT+TGG 0.380838 3_4:-6383005 Msa0487480:CDS
GCTTGCATGGTTGGACCTCT+TGG 0.383806 3_4:-6383829 Msa0487480:CDS
AACTTTGGCAATTCTTTACT+AGG 0.383927 3_4:+6386229 None:intergenic
AACAAATTGCAGCTTCATCT+TGG 0.384111 3_4:-6386606 Msa0487480:five_prime_UTR
GCACTAACAACTGGTTACTT+TGG 0.390334 3_4:-6384810 Msa0487480:CDS
TGAGAGAAAGCGAGCATCCT+TGG 0.409469 3_4:-6382929 Msa0487480:CDS
GATCAAGAGGTTTGTTGAGT+TGG 0.420442 3_4:-6383759 Msa0487480:CDS
TACAATAGTATCACAATCTC+TGG 0.421227 3_4:+6383022 None:intergenic
GTCTAACAACGTTCAGCGGC+TGG 0.427914 3_4:-6384785 Msa0487480:CDS
GTGACAGTTCATTTACTTGA+AGG 0.431162 3_4:-6382779 Msa0487480:three_prime_UTR
AAATTCCAGGTAGCCATAGA+AGG 0.448639 3_4:-6382812 Msa0487480:three_prime_UTR
CTGTGGATCGCTTGCATGGT+TGG 0.449451 3_4:-6383838 Msa0487480:CDS
CTGGCTGTTGCACTAACAAC+TGG 0.450496 3_4:-6384819 Msa0487480:CDS
TTGTTGAGTTGGATGCGATT+TGG 0.450759 3_4:-6383748 Msa0487480:CDS
AAAGTAGAGACCATATTAGA+AGG 0.455328 3_4:+6385290 None:intergenic
GAAGCATTATCCAATAACTT+TGG 0.459077 3_4:+6386214 None:intergenic
TATCCCAAATATGATGGAAA+AGG 0.466392 3_4:+6384026 None:intergenic
TAGTGCAACAGCCAGATACT+TGG 0.469450 3_4:+6384827 None:intergenic
TCTCTTTCAATGCTTAAAAG+AGG 0.475069 3_4:+6386531 None:intergenic
AGGCATACAGTTTGGCCTGA+TGG 0.477767 3_4:-6382997 Msa0487480:CDS
GGCATACAGTTTGGCCTGAT+GGG 0.477918 3_4:-6382996 Msa0487480:CDS
GACATTTGTTCAGATGTTAA+GGG 0.482080 3_4:+6386555 None:intergenic
CTCTTTCAATGCTTAAAAGA+GGG 0.490143 3_4:+6386532 None:intergenic
TTCTCTCATTTCATTGAACT+CGG 0.491070 3_4:+6382944 None:intergenic
AGATTCTGAAGACATACAAC+AGG 0.496202 3_4:-6386508 Msa0487480:intron
AGGAAGGTCAAGGTAAAGAA+TGG 0.496325 3_4:+6385310 None:intergenic
CTAGTCACATGACCGACACT+AGG 0.497152 3_4:+6385341 None:intergenic
TGTCTCTGCTGCTTGTATCA+TGG 0.508900 3_4:-6383710 Msa0487480:CDS
ATGATTGCTGAATTCAAGAA+TGG 0.511956 3_4:-6383874 Msa0487480:CDS
TAAACACTTAGCAGTTATAG+TGG 0.520490 3_4:-6383944 Msa0487480:CDS
TTTGGGATAGAAACAGCTAA+AGG 0.521423 3_4:-6384012 Msa0487480:CDS
CTGTGTGCCTATTTGGAGAA+TGG 0.525340 3_4:-6382844 Msa0487480:CDS
TTCATTGAACTCGGCAACAA+AGG 0.530538 3_4:+6382953 None:intergenic
CAGTGCTCAAACAACCCATC+AGG 0.538111 3_4:+6382982 None:intergenic
TAATCCGTGTCCATTTAATC+GGG 0.543035 3_4:+6383783 None:intergenic
TGTTTCTATCCCAAATATGA+TGG 0.543659 3_4:+6384020 None:intergenic
TATTACCTTCTATGGCTACC+TGG 0.545154 3_4:+6382807 None:intergenic
TGCTTGAACTCAGTGTTACT+GGG 0.546484 3_4:-6384752 Msa0487480:CDS
GGTATTAACCTGATATACTC+TGG 0.555242 3_4:-6385378 Msa0487480:five_prime_UTR
GGTCAAGGTAAAGAATGGTT+TGG 0.564374 3_4:+6385315 None:intergenic
AAGTTATTTGGCCCTAGTGT+CGG 0.566597 3_4:-6385353 Msa0487480:five_prime_UTR
CATGAAATGGAGCATGATGT+TGG 0.566790 3_4:-6386633 Msa0487480:five_prime_UTR
TAGAGACCATATTAGAAGGA+AGG 0.567138 3_4:+6385294 None:intergenic
TGGTTGGACCTCTTGGTGTG+TGG 0.574188 3_4:-6383822 Msa0487480:CDS
TCTTTCAATGCTTAAAAGAG+GGG 0.580875 3_4:+6386533 None:intergenic
TTATCTGTGGATCGCTTGCA+TGG 0.589765 3_4:-6383842 Msa0487480:CDS
GGGAGTCTAACAACGTTCAG+CGG 0.607124 3_4:-6384789 Msa0487480:CDS
AAACAGCTAAAGGTTTCAAG+TGG 0.608710 3_4:-6384002 Msa0487480:CDS
GTATAAACATATGCTCTCCA+AGG 0.612277 3_4:+6382912 None:intergenic
TTATCCCGATTAAATGGACA+CGG 0.612286 3_4:-6383787 Msa0487480:CDS
TAGTCACATGACCGACACTA+GGG 0.613234 3_4:+6385342 None:intergenic
GGACACGGATTAGGATCAAG+AGG 0.621332 3_4:-6383772 Msa0487480:CDS
CCATATTAGAAGGAAGGTCA+AGG 0.628711 3_4:+6385300 None:intergenic
CATCTAATCCACACACCAAG+AGG 0.633898 3_4:+6383814 None:intergenic
ATGGTGAAAATGCTTATCTG+TGG 0.657260 3_4:-6383855 Msa0487480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTCAATTATTGTA+CGG - chr3_4:6383643-6383662 Msa0487480:intron 10.0%
!!! TATTTTAAATAATCAATCAT+AGG + chr3_4:6384309-6384328 None:intergenic 10.0%
!!! ATTTCTTATTATTTTGATTA+CGG - chr3_4:6386221-6386240 Msa0487480:five_prime_UTR 10.0%
!!! ATATGTTTTTAATGATTTGA+CGG + chr3_4:6382957-6382976 None:intergenic 15.0%
!! TCATTAAAAACATATATGAT+TGG - chr3_4:6382962-6382981 Msa0487480:CDS 15.0%
!!! GTAAATTTTTTATACACTAT+CGG + chr3_4:6383021-6383040 None:intergenic 15.0%
!!! TCATTTTCTGTTTATAATAT+CGG - chr3_4:6383574-6383593 Msa0487480:intron 15.0%
!! AACAATAATCATGTATTATA+GGG - chr3_4:6385169-6385188 Msa0487480:intron 15.0%
!!! TTTCTTATTATTTTGATTAC+GGG - chr3_4:6386222-6386241 Msa0487480:five_prime_UTR 15.0%
!! ATTCATTATATCACATGAAA+TGG - chr3_4:6382690-6382709 Msa0487480:three_prime_UTR 20.0%
!!! AAGATTCAAAACATTTTTGT+TGG - chr3_4:6382874-6382893 Msa0487480:CDS 20.0%
!!! TTTTGTTTTCTTATGGTAAA+TGG - chr3_4:6383048-6383067 Msa0487480:intron 20.0%
!! AAACATGATAAAGTTTAAGT+TGG + chr3_4:6383430-6383449 None:intergenic 20.0%
!! AACTTAAACTTTATCATGTT+TGG - chr3_4:6383429-6383448 Msa0487480:intron 20.0%
!! AACAGAAAATGAAAATCAAT+AGG + chr3_4:6383566-6383585 None:intergenic 20.0%
!! ATTATATTGCCCAAAAATAA+AGG + chr3_4:6383846-6383865 None:intergenic 20.0%
!! TATAATGAACTTATGAATTC+TGG - chr3_4:6383860-6383879 Msa0487480:CDS 20.0%
!!! TACTGTTCAATAACTTTTTA+CGG - chr3_4:6384876-6384895 Msa0487480:CDS 20.0%
!!! AATTGTAAGTTTTGTAATAC+AGG - chr3_4:6385118-6385137 Msa0487480:intron 20.0%
!! CAACAATAATCATGTATTAT+AGG - chr3_4:6385168-6385187 Msa0487480:intron 20.0%
!! TACTAGAAGAAAAGAAAAAA+AGG - chr3_4:6385821-6385840 Msa0487480:intron 20.0%
!! AAAAAAGGAAAACTATATTC+AGG - chr3_4:6385836-6385855 Msa0487480:intron 20.0%
!! AAAAAGGAAAACTATATTCA+GGG - chr3_4:6385837-6385856 Msa0487480:intron 20.0%
!!! ATTTAATTTCATGTTTCAAG+AGG - chr3_4:6385867-6385886 Msa0487480:intron 20.0%
!!! TGTACTCTTTTGTTTTCTTA+TGG - chr3_4:6383041-6383060 Msa0487480:intron 25.0%
! TAAAGAATTGCCAAAGTTAT+TGG - chr3_4:6383112-6383131 Msa0487480:intron 25.0%
! TGCTTCATATTTGATTCATT+TGG - chr3_4:6383139-6383158 Msa0487480:intron 25.0%
!! ATTTTATCATTGAAGTTCAG+AGG + chr3_4:6383197-6383216 None:intergenic 25.0%
! TGAAATAAAACCTCATGTAA+TGG - chr3_4:6383510-6383529 Msa0487480:intron 25.0%
!! GATTATCTTCATCATCTTTT+AGG - chr3_4:6383612-6383631 Msa0487480:intron 25.0%
! GTTGTTCATACTTTATACAA+TGG + chr3_4:6383697-6383716 None:intergenic 25.0%
!!! TTGTTGCATTCCTTTATTTT+TGG - chr3_4:6383833-6383852 Msa0487480:CDS 25.0%
!!! TGTTGCATTCCTTTATTTTT+GGG - chr3_4:6383834-6383853 Msa0487480:CDS 25.0%
!!! TTGTTTTGCTATTATAATGC+AGG - chr3_4:6383937-6383956 Msa0487480:CDS 25.0%
! TTGATGTCATTATGATACAT+TGG + chr3_4:6384132-6384151 None:intergenic 25.0%
!! AAAAGTGTAGACTTAATTTC+TGG - chr3_4:6384157-6384176 Msa0487480:intron 25.0%
! CAACTATAGTTTATGAGAAA+AGG - chr3_4:6384235-6384254 Msa0487480:intron 25.0%
!! ACTTTTATGAATGTCTTTCT+AGG - chr3_4:6384426-6384445 Msa0487480:intron 25.0%
! TCTAATAGGTAATGTTAAGA+AGG - chr3_4:6384633-6384652 Msa0487480:intron 25.0%
!!! GTTTGATAAGTATGTTTTAG+TGG - chr3_4:6384659-6384678 Msa0487480:intron 25.0%
!!! ATAAGTATGTTTTAGTGGTA+TGG - chr3_4:6384664-6384683 Msa0487480:intron 25.0%
!! TTTTATATGAGAACTAGAGA+AGG - chr3_4:6384946-6384965 Msa0487480:intron 25.0%
! TTTATATGAGAACTAGAGAA+GGG - chr3_4:6384947-6384966 Msa0487480:intron 25.0%
! ACATGAATATTAGATTGAGA+AGG + chr3_4:6385708-6385727 None:intergenic 25.0%
!!! TTTTGTTTATGTTCGTGAAT+AGG - chr3_4:6385778-6385797 Msa0487480:intron 25.0%
! ATACAAAGTTGTAACAAAAG+TGG + chr3_4:6385966-6385985 None:intergenic 25.0%
!! GTTGACGTTTTTAAACATAA+AGG - chr3_4:6386103-6386122 Msa0487480:intron 25.0%
! ATAGATGAAACACATGTTAA+AGG - chr3_4:6386143-6386162 Msa0487480:intron 25.0%
!!! TTTTTTGACAAAACTGCAAT+AGG + chr3_4:6386172-6386191 None:intergenic 25.0%
! GATTGTGATACTATTGTAAA+AGG - chr3_4:6386319-6386338 Msa0487480:intron 25.0%
!! ATTTGTTCCTCATTCTTTTT+AGG - chr3_4:6386457-6386476 Msa0487480:intron 25.0%
!! TTTGTTCCTCATTCTTTTTA+GGG - chr3_4:6386458-6386477 Msa0487480:intron 25.0%
! ATGGATGAATTATAAATTCC+AGG - chr3_4:6386511-6386530 Msa0487480:five_prime_UTR 25.0%
AAAAATAGAGGAGACAGAAT+TGG + chr3_4:6382761-6382780 None:intergenic 30.0%
AGATGTTAAGGGAAAAATAG+AGG + chr3_4:6382773-6382792 None:intergenic 30.0%
GACATTTGTTCAGATGTTAA+GGG + chr3_4:6382784-6382803 None:intergenic 30.0%
TCTTTCAATGCTTAAAAGAG+GGG + chr3_4:6382806-6382825 None:intergenic 30.0%
CTCTTTCAATGCTTAAAAGA+GGG + chr3_4:6382807-6382826 None:intergenic 30.0%
TCTCTTTCAATGCTTAAAAG+AGG + chr3_4:6382808-6382827 None:intergenic 30.0%
AACTTTGGCAATTCTTTACT+AGG + chr3_4:6383110-6383129 None:intergenic 30.0%
! GAAGCATTATCCAATAACTT+TGG + chr3_4:6383125-6383144 None:intergenic 30.0%
!! TTGATTCATTTGGCTGTTTT+CGG - chr3_4:6383149-6383168 Msa0487480:intron 30.0%
GTAATGGTCAAATGGAAATA+AGG + chr3_4:6383249-6383268 None:intergenic 30.0%
! ACTATTTTCAGTTCATGTTG+TGG - chr3_4:6383290-6383309 Msa0487480:intron 30.0%
ATATGAGTACTATAGTGAAC+TGG + chr3_4:6383359-6383378 None:intergenic 30.0%
GTTTATAATATCGGTCGTAT+AGG - chr3_4:6383583-6383602 Msa0487480:intron 30.0%
!!! TTCATCATCTTTTAGGATCT+AGG - chr3_4:6383619-6383638 Msa0487480:intron 30.0%
TATACTCTGGACAAGTTATT+TGG - chr3_4:6383971-6383990 Msa0487480:CDS 30.0%
AAAGTAGAGACCATATTAGA+AGG + chr3_4:6384049-6384068 None:intergenic 30.0%
AATATATATGTCAGAGAGAG+AGG + chr3_4:6384091-6384110 None:intergenic 30.0%
GTCATTATGATACATTGGAA+TGG + chr3_4:6384127-6384146 None:intergenic 30.0%
CGGAGCTTCTTAAAAATTTA+AGG + chr3_4:6384366-6384385 None:intergenic 30.0%
! TCAAAAAAGTCTGTTGCTTA+TGG + chr3_4:6384402-6384421 None:intergenic 30.0%
TTATGAATGTCTTTCTAGGT+TGG - chr3_4:6384430-6384449 Msa0487480:intron 30.0%
!!! TAGGTTGGTTCTTTTCTTAT+GGG - chr3_4:6384445-6384464 Msa0487480:intron 30.0%
! AGGATGAGCTTTTGAATAAT+TGG - chr3_4:6385262-6385281 Msa0487480:intron 30.0%
! TTGCCTTTTCCATCATATTT+GGG - chr3_4:6385307-6385326 Msa0487480:five_prime_UTR 30.0%
! TATCCCAAATATGATGGAAA+AGG + chr3_4:6385313-6385332 None:intergenic 30.0%
! TGTTTCTATCCCAAATATGA+TGG + chr3_4:6385319-6385338 None:intergenic 30.0%
GCTAAACTTGACTTCTTATA+AGG - chr3_4:6385368-6385387 Msa0487480:five_prime_UTR 30.0%
TAAACACTTAGCAGTTATAG+TGG - chr3_4:6385392-6385411 Msa0487480:intron 30.0%
ATGATTGCTGAATTCAAGAA+TGG - chr3_4:6385462-6385481 Msa0487480:intron 30.0%
! AGAAATGAAAGTTGGTTCAA+CGG + chr3_4:6385940-6385959 None:intergenic 30.0%
ATATCTCACTTGTTTGATGT+AGG - chr3_4:6386285-6386304 Msa0487480:intron 30.0%
TACAATAGTATCACAATCTC+TGG + chr3_4:6386317-6386336 None:intergenic 30.0%
! ATTGTAAAAGGCATACAGTT+TGG - chr3_4:6386331-6386350 Msa0487480:intron 30.0%
TTCTCTCATTTCATTGAACT+CGG + chr3_4:6386395-6386414 None:intergenic 30.0%
TAAGATCCCTAAAAAGAATG+AGG + chr3_4:6386467-6386486 None:intergenic 30.0%
TAATATACTGTGTGCCTATT+TGG - chr3_4:6386485-6386504 Msa0487480:intron 30.0%
AATTCATCCATTCTCCAAAT+AGG + chr3_4:6386502-6386521 None:intergenic 30.0%
AACAAATTGCAGCTTCATCT+TGG - chr3_4:6382730-6382749 Msa0487480:three_prime_UTR 35.0%
GGACATTTGTTCAGATGTTA+AGG + chr3_4:6382785-6382804 None:intergenic 35.0%
! AGATTCTGAAGACATACAAC+AGG - chr3_4:6382828-6382847 Msa0487480:exon 35.0%
!! GATTGGTTGTGATTTGTTGA+CGG - chr3_4:6382979-6382998 Msa0487480:CDS 35.0%
! TGCGAGTAGTTAATCGTTTT+TGG - chr3_4:6383218-6383237 Msa0487480:intron 35.0%
TCCATTTGACCATTACTAGT+TGG - chr3_4:6383253-6383272 Msa0487480:intron 35.0%
TCCAACTAGTAATGGTCAAA+TGG + chr3_4:6383257-6383276 None:intergenic 35.0%
ACCATTACTAGTTGGAGTTA+CGG - chr3_4:6383261-6383280 Msa0487480:intron 35.0%
ACATTGTACACCATTACATG+AGG + chr3_4:6383523-6383542 None:intergenic 35.0%
!! TGTCCTGTATTTTTCAACCT+AGG - chr3_4:6383734-6383753 Msa0487480:CDS 35.0%
!! GTCCTGTATTTTTCAACCTA+GGG - chr3_4:6383735-6383754 Msa0487480:CDS 35.0%
! TTCCCTAGGTTGAAAAATAC+AGG + chr3_4:6383740-6383759 None:intergenic 35.0%
TCTGGTCATACTTTCATACA+AGG - chr3_4:6383878-6383897 Msa0487480:CDS 35.0%
GGTATTAACCTGATATACTC+TGG - chr3_4:6383958-6383977 Msa0487480:CDS 35.0%
! TAACTTGTCCAGAGTATATC+AGG + chr3_4:6383969-6383988 None:intergenic 35.0%
TAGAGACCATATTAGAAGGA+AGG + chr3_4:6384045-6384064 None:intergenic 35.0%
CTGGTAACATTAGACAATGA+TGG - chr3_4:6384176-6384195 Msa0487480:intron 35.0%
!!! CTAGGTTGGTTCTTTTCTTA+TGG - chr3_4:6384444-6384463 Msa0487480:intron 35.0%
!! TTGGTTCTTTTCTTATGGGA+TGG - chr3_4:6384449-6384468 Msa0487480:intron 35.0%
! TCTTTTCTTATGGGATGGTT+TGG - chr3_4:6384454-6384473 Msa0487480:intron 35.0%
ATCAAATGTGTCCAAGTATC+TGG - chr3_4:6384498-6384517 Msa0487480:intron 35.0%
! CACTAACAACTGGTTACTTT+GGG - chr3_4:6384527-6384546 Msa0487480:intron 35.0%
TATATGACAAAACTCACCGT+TGG - chr3_4:6384904-6384923 Msa0487480:intron 35.0%
GAGAAGGGATCAAATTACAT+TGG - chr3_4:6384962-6384981 Msa0487480:intron 35.0%
TTGAATAATTGGAGTTCTGC+AGG - chr3_4:6385273-6385292 Msa0487480:intron 35.0%
TGAATAATTGGAGTTCTGCA+GGG - chr3_4:6385274-6385293 Msa0487480:intron 35.0%
! GTTGCCTTTTCCATCATATT+TGG - chr3_4:6385306-6385325 Msa0487480:five_prime_UTR 35.0%
! TTTGGGATAGAAACAGCTAA+AGG - chr3_4:6385324-6385343 Msa0487480:five_prime_UTR 35.0%
AAACAGCTAAAGGTTTCAAG+TGG - chr3_4:6385334-6385353 Msa0487480:five_prime_UTR 35.0%
! GTTTCAAGTGGCTTCTTATA+AGG - chr3_4:6385346-6385365 Msa0487480:five_prime_UTR 35.0%
!!! GTGGTGTTTTTGCTGATTTT+AGG - chr3_4:6385411-6385430 Msa0487480:intron 35.0%
!!! TGCTGATTTTAGGCTTGTTA+TGG - chr3_4:6385421-6385440 Msa0487480:intron 35.0%
!!! GCTGATTTTAGGCTTGTTAT+GGG - chr3_4:6385422-6385441 Msa0487480:intron 35.0%
!!! CTGATTTTAGGCTTGTTATG+GGG - chr3_4:6385423-6385442 Msa0487480:intron 35.0%
ATGGTGAAAATGCTTATCTG+TGG - chr3_4:6385481-6385500 Msa0487480:intron 35.0%
! TGGCTTTTATCCCGATTAAA+TGG - chr3_4:6385543-6385562 Msa0487480:intron 35.0%
TTATCCCGATTAAATGGACA+CGG - chr3_4:6385549-6385568 Msa0487480:intron 35.0%
TAATCCGTGTCCATTTAATC+GGG + chr3_4:6385556-6385575 None:intergenic 35.0%
CTAATCCGTGTCCATTTAAT+CGG + chr3_4:6385557-6385576 None:intergenic 35.0%
GAACTTTCATAGCTATAACC+TGG - chr3_4:6385734-6385753 Msa0487480:intron 35.0%
!! CTTTTGATTCTTCGAAAACC+AGG + chr3_4:6385755-6385774 None:intergenic 35.0%
AGTGGAACAGAAATGAAAGT+TGG + chr3_4:6385948-6385967 None:intergenic 35.0%
TGCATGATCACTGAATGATA+TGG - chr3_4:6385985-6386004 Msa0487480:intron 35.0%
GTATAAACATATGCTCTCCA+AGG + chr3_4:6386427-6386446 None:intergenic 35.0%
CACGACAATATTACCTTCTA+TGG + chr3_4:6386540-6386559 None:intergenic 35.0%
GTGACAGTTCATTTACTTGA+AGG - chr3_4:6386557-6386576 Msa0487480:five_prime_UTR 35.0%
TAGCAGCTACTTGAAAAAAC+TGG + chr3_4:6386650-6386669 None:intergenic 35.0%
CATGAAATGGAGCATGATGT+TGG - chr3_4:6382703-6382722 Msa0487480:three_prime_UTR 40.0%
!! TTGGCTGTTTTCGGTATTCT+CGG - chr3_4:6383158-6383177 Msa0487480:intron 40.0%
ACCGTAACTCCAACTAGTAA+TGG + chr3_4:6383265-6383284 None:intergenic 40.0%
GGAATAAATGCAACTACTGC+AGG + chr3_4:6383676-6383695 None:intergenic 40.0%
AAGTTATTTGGCCCTAGTGT+CGG - chr3_4:6383983-6384002 Msa0487480:CDS 40.0%
GGTCAAGGTAAAGAATGGTT+TGG + chr3_4:6384024-6384043 None:intergenic 40.0%
AGGAAGGTCAAGGTAAAGAA+TGG + chr3_4:6384029-6384048 None:intergenic 40.0%
CCATATTAGAAGGAAGGTCA+AGG + chr3_4:6384039-6384058 None:intergenic 40.0%
CCTTGACCTTCCTTCTAATA+TGG - chr3_4:6384036-6384055 Msa0487480:CDS 40.0%
CTTATGGAGAAGTTAGACGA+CGG + chr3_4:6384386-6384405 None:intergenic 40.0%
GCACTAACAACTGGTTACTT+TGG - chr3_4:6384526-6384545 Msa0487480:intron 40.0%
ATGCTTGAACTCAGTGTTAC+TGG - chr3_4:6384583-6384602 Msa0487480:intron 40.0%
! TGCTTGAACTCAGTGTTACT+GGG - chr3_4:6384584-6384603 Msa0487480:intron 40.0%
! AACTCAGTGTTACTGGGAAT+TGG - chr3_4:6384590-6384609 Msa0487480:intron 40.0%
! AATTGGCTCTTTGTTCTGCT+TGG - chr3_4:6384607-6384626 Msa0487480:intron 40.0%
! GTTCTGCTTGGCTTTCTAAT+AGG - chr3_4:6384619-6384638 Msa0487480:intron 40.0%
CAGAGGAACTTTCAATCCAA+CGG + chr3_4:6384923-6384942 None:intergenic 40.0%
! GTTCTCATATAAAAGCGCAG+AGG + chr3_4:6384940-6384959 None:intergenic 40.0%
ACACACACACACATATGAGA+AGG + chr3_4:6385208-6385227 None:intergenic 40.0%
AATTATCGCAGTCTATGCAG+CGG - chr3_4:6385230-6385249 Msa0487480:intron 40.0%
CGATTAAATGGACACGGATT+AGG - chr3_4:6385555-6385574 Msa0487480:intron 40.0%
!! GATCAAGAGGTTTGTTGAGT+TGG - chr3_4:6385577-6385596 Msa0487480:intron 40.0%
!! TTGTTGAGTTGGATGCGATT+TGG - chr3_4:6385588-6385607 Msa0487480:intron 40.0%
TTCATTGAACTCGGCAACAA+AGG + chr3_4:6386386-6386405 None:intergenic 40.0%
AAATTCCAGGTAGCCATAGA+AGG - chr3_4:6386524-6386543 Msa0487480:five_prime_UTR 40.0%
TATTACCTTCTATGGCTACC+TGG + chr3_4:6386532-6386551 None:intergenic 40.0%
TGACTGTTGTCTTCAGTTGC+AGG - chr3_4:6383082-6383101 Msa0487480:intron 45.0%
!! TGGCTGTTTTCGGTATTCTC+GGG - chr3_4:6383159-6383178 Msa0487480:intron 45.0%
!!! CAGTTTTGAGCAGATTCCCT+AGG + chr3_4:6383754-6383773 None:intergenic 45.0%
TAGTCACATGACCGACACTA+GGG + chr3_4:6383997-6384016 None:intergenic 45.0%
TAGTGCAACAGCCAGATACT+TGG + chr3_4:6384512-6384531 None:intergenic 45.0%
CTATGCAGCGGTGAATTGAT+AGG - chr3_4:6385242-6385261 Msa0487480:intron 45.0%
!! GGCTTGTTATGGGGTATTAG+TGG - chr3_4:6385432-6385451 Msa0487480:intron 45.0%
TTATCTGTGGATCGCTTGCA+TGG - chr3_4:6385494-6385513 Msa0487480:intron 45.0%
CATCTAATCCACACACCAAG+AGG + chr3_4:6385525-6385544 None:intergenic 45.0%
!! CTCTTGGTGTGTGGATTAGA+TGG - chr3_4:6385523-6385542 Msa0487480:intron 45.0%
! TGTCTCTGCTGCTTGTATCA+TGG - chr3_4:6385626-6385645 Msa0487480:intron 45.0%
GGTCTAACTGTGATGTTGAG+TGG + chr3_4:6386027-6386046 None:intergenic 45.0%
GATTGTGTCCTCGTTATCGA+GGG + chr3_4:6386048-6386067 None:intergenic 45.0%
AGATTGTGTCCTCGTTATCG+AGG + chr3_4:6386049-6386068 None:intergenic 45.0%
CTGTGTGCCTATTTGGAGAA+TGG - chr3_4:6386492-6386511 Msa0487480:intron 45.0%
!! GGCTGTTTTCGGTATTCTCG+GGG - chr3_4:6383160-6383179 Msa0487480:intron 50.0%
CTAGTCACATGACCGACACT+AGG + chr3_4:6383998-6384017 None:intergenic 50.0%
CTGGCTGTTGCACTAACAAC+TGG - chr3_4:6384517-6384536 Msa0487480:intron 50.0%
GGGAGTCTAACAACGTTCAG+CGG - chr3_4:6384547-6384566 Msa0487480:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3_4:6384803-6384822 Msa0487480:CDS 50.0%
!! GGACACGGATTAGGATCAAG+AGG - chr3_4:6385564-6385583 Msa0487480:intron 50.0%
CAGTTAGACCCTCGATAACG+AGG - chr3_4:6386037-6386056 Msa0487480:intron 50.0%
AGGCATACAGTTTGGCCTGA+TGG - chr3_4:6386339-6386358 Msa0487480:intron 50.0%
GGCATACAGTTTGGCCTGAT+GGG - chr3_4:6386340-6386359 Msa0487480:intron 50.0%
CAGTGCTCAAACAACCCATC+AGG + chr3_4:6386357-6386376 None:intergenic 50.0%
TGAGAGAAAGCGAGCATCCT+TGG - chr3_4:6386407-6386426 Msa0487480:intron 50.0%
AGAGAGGAACGAGCGAGGAA+GGG + chr3_4:6384075-6384094 None:intergenic 55.0%
GTCTAACAACGTTCAGCGGC+TGG - chr3_4:6384551-6384570 Msa0487480:intron 55.0%
CTGTGGATCGCTTGCATGGT+TGG - chr3_4:6385498-6385517 Msa0487480:intron 55.0%
GCTTGCATGGTTGGACCTCT+TGG - chr3_4:6385507-6385526 Msa0487480:intron 55.0%
! TGGTTGGACCTCTTGGTGTG+TGG - chr3_4:6385514-6385533 Msa0487480:intron 55.0%
GAGAGAGGAACGAGCGAGGA+AGG + chr3_4:6384076-6384095 None:intergenic 60.0%
CAGAGAGAGAGGAACGAGCG+AGG + chr3_4:6384080-6384099 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 6382656 6386702 6382656 ID=Msa0487480;Name=Msa0487480
chr3_4 mRNA 6382656 6386702 6382656 ID=Msa0487480-mRNA-1;Parent=Msa0487480;Name=Msa0487480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=374|1|1|1|0.2|0.16|6|177|264
chr3_4 exon 6382656 6383051 6382656 ID=Msa0487480-mRNA-1:exon:2181;Parent=Msa0487480-mRNA-1
chr3_4 exon 6383684 6384063 6383684 ID=Msa0487480-mRNA-1:exon:2180;Parent=Msa0487480-mRNA-1
chr3_4 exon 6384718 6384910 6384718 ID=Msa0487480-mRNA-1:exon:2179;Parent=Msa0487480-mRNA-1
chr3_4 exon 6385301 6385399 6385301 ID=Msa0487480-mRNA-1:exon:2178;Parent=Msa0487480-mRNA-1
chr3_4 exon 6386177 6386260 6386177 ID=Msa0487480-mRNA-1:exon:2177;Parent=Msa0487480-mRNA-1
chr3_4 exon 6386509 6386702 6386509 ID=Msa0487480-mRNA-1:exon:2176;Parent=Msa0487480-mRNA-1
chr3_4 five_prime_UTR 6386509 6386702 6386509 ID=Msa0487480-mRNA-1:five_prime_utr;Parent=Msa0487480-mRNA-1
chr3_4 five_prime_UTR 6386177 6386260 6386177 ID=Msa0487480-mRNA-1:five_prime_utr;Parent=Msa0487480-mRNA-1
chr3_4 five_prime_UTR 6385304 6385399 6385304 ID=Msa0487480-mRNA-1:five_prime_utr;Parent=Msa0487480-mRNA-1
chr3_4 CDS 6385301 6385303 6385301 ID=Msa0487480-mRNA-1:cds;Parent=Msa0487480-mRNA-1
chr3_4 CDS 6384718 6384910 6384718 ID=Msa0487480-mRNA-1:cds;Parent=Msa0487480-mRNA-1
chr3_4 CDS 6383684 6384063 6383684 ID=Msa0487480-mRNA-1:cds;Parent=Msa0487480-mRNA-1
chr3_4 CDS 6382833 6383051 6382833 ID=Msa0487480-mRNA-1:cds;Parent=Msa0487480-mRNA-1
chr3_4 three_prime_UTR 6382656 6382832 6382656 ID=Msa0487480-mRNA-1:three_prime_utr;Parent=Msa0487480-mRNA-1
Gene Sequence

>Msa0487480

ATGGTTGGTTCTTTTCTTATGGGATGGTTTGGTGTTGTATTCAAAGAAGACATATCAAATGTGTCCAAGTATCTGGCTGTTGCACTAACAACTGGTTACTTTGGGAGTCTAACAACGTTCAGCGGCTGGAATCAGAAAATGCTTGAACTCAGTGTTACTGGGAATTGGCTCTTTGTTCTGCTTGGCTTTCTAATAGGGTTATTTCTTGTTGCCTTTTCCATCATATTTGGGATAGAAACAGCTAAAGGTTTCAAGTGGCTTCTTATAAGGCTAAACTTGACTTCTTATAAGGCTAAACACTTAGCAGTTATAGTGGTGTTTTTGCTGATTTTAGGCTTGTTATGGGGTATTAGTGGTGTATTAATGATTGCTGAATTCAAGAATGGTGAAAATGCTTATCTGTGGATCGCTTGCATGGTTGGACCTCTTGGTGTGTGGATTAGATGGCTTTTATCCCGATTAAATGGACACGGATTAGGATCAAGAGGTTTGTTGAGTTGGATGCGATTTGGAACTCTAATTGCAAATGTCTCTGCTGCTTGTATCATGGCTGCACTTGCTACAACAAAGATATACGTGAACACCAGAGATTGTGATACTATTGTAAAAGGCATACAGTTTGGCCTGATGGGTTGTTTGAGCACTGTCTCTACCTTTGTTGCCGAGTTCAATGAAATGAGAGAAAGCGAGCATCCTTGGAGAGCATATGTTTATACTATAATCACAATTTGTTCCTCATTCTTTTTAGGGATCTTAATATACTGTGTGCCTATTTGGAGAATGGATGAATTATAA

Protein sequence

>Msa0487480

MVGSFLMGWFGVVFKEDISNVSKYLAVALTTGYFGSLTTFSGWNQKMLELSVTGNWLFVLLGFLIGLFLVAFSIIFGIETAKGFKWLLIRLNLTSYKAKHLAVIVVFLLILGLLWGISGVLMIAEFKNGENAYLWIACMVGPLGVWIRWLLSRLNGHGLGSRGLLSWMRFGTLIANVSAACIMAALATTKIYVNTRDCDTIVKGIQFGLMGCLSTVSTFVAEFNEMRESEHPWRAYVYTIITICSSFFLGILIYCVPIWRMDEL*