AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586080 MtrunA17_Chr4g0001911 57.789 199 41 4 1 196 1 159 3.36e-43 142
Msa0586080 MtrunA17_Chr4g0001921 64.935 77 25 2 1 76 13 88 1.07e-21 87.0
Msa0586080 MtrunA17_Chr4g0001891 38.776 196 73 4 1 196 1 149 3.14e-18 77.4
Msa0586080 MtrunA17_Chr4g0001881 67.347 49 16 0 24 72 6 54 1.73e-12 62.0
Msa0586080 MtrunA17_Chr4g0001901 52.055 73 24 4 1 72 1 63 1.99e-11 58.9
Msa0586080 MtrunA17_Chr4g0001961 88.889 27 3 0 170 196 109 135 3.10e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATGGGAGGAGGTGGATT+TGG 0.280190 4_2:-7169303 Msa0586080:CDS
GGAGGAGGTGGAAGGGGAGG+AGG 0.294260 4_2:-7169357 Msa0586080:CDS
GGAGGTGGAAGGGGAGGAGG+TGG 0.304793 4_2:-7169354 Msa0586080:CDS
GGTGGAGGAAAGGGAGGAGG+TGG 0.314138 4_2:-7169234 Msa0586080:CDS
GCCTTCATCTTCATTTGAAA+TGG 0.326206 4_2:+7169660 None:intergenic
AGGGGAGGAGGTGGATTTAG+TGG 0.341806 4_2:-7169345 Msa0586080:CDS
GGTGGAGGAAAGGGAGGAGG+TGG 0.346499 4_2:-7169279 Msa0586080:CDS
GGAAAGGGAGGAGGTGGAAT+GGG 0.349740 4_2:-7169228 Msa0586080:CDS
GGAATAGGAGGTGGAGGAAA+GGG 0.351372 4_2:-7169243 Msa0586080:CDS
AAGGGAGGAGGTGGAATGGG+AGG 0.356510 4_2:-7169225 Msa0586080:CDS
GAACAAGCACATGAGGTTAA+TGG 0.363274 4_2:-7169616 Msa0586080:intron
ATAGGAGGTGGAGGAAAGGG+AGG 0.364127 4_2:-7169240 Msa0586080:CDS
GGATTTGGAGGAGGAGTGGC+AGG 0.379627 4_2:-7169192 Msa0586080:CDS
GGAGGAGGTGGAATGGGAGG+AGG 0.381242 4_2:-7169312 Msa0586080:CDS
GGATTTGGAGGTGGAGGAAA+GGG 0.386379 4_2:-7169288 Msa0586080:CDS
TGGAATAGGAGGTGGAGGAA+AGG 0.387806 4_2:-7169244 Msa0586080:CDS
GGAGGTGGAATGGGAGGAGG+TGG 0.390133 4_2:-7169309 Msa0586080:CDS
GGAGGTGGAGGAAAGGGAGG+AGG 0.395444 4_2:-7169237 Msa0586080:CDS
TTTGGAGGTGGAGGAAAGGG+AGG 0.396785 4_2:-7169285 Msa0586080:CDS
GGAGGAGGTGGAATGGGAGG+GGG 0.398655 4_2:-7169222 Msa0586080:CDS
GGATCTCGAGGAGGTGGAAT+AGG 0.402755 4_2:-7169258 Msa0586080:CDS
ATTATCGGCGGTGGAATTGT+AGG 0.404109 4_2:-7169153 Msa0586080:CDS
TCGACGGGAGGAGGTGGAAG+GGG 0.410147 4_2:-7169363 Msa0586080:CDS
CATGTGCTTGTTCATTACTC+TGG 0.410300 4_2:+7169626 None:intergenic
ATAGGAAATTTACATGGAAA+TGG 0.411309 4_2:-7169480 Msa0586080:intron
GAGCATTTGAGATGATCAAT+AGG 0.414061 4_2:+7169686 None:intergenic
GCAAGCGGAGGAGGTGGAAT+GGG 0.415178 4_2:-7169318 Msa0586080:CDS
AGGAAAGGGAGGAGGTGGAA+TGG 0.417507 4_2:-7169229 Msa0586080:CDS
GGAGGTGGAGGAAAGGGAGG+AGG 0.423397 4_2:-7169282 Msa0586080:CDS
ACGGGAGGAGGTGGAAGGGG+AGG 0.424441 4_2:-7169360 Msa0586080:CDS
TGGATTTGGAGGTGGAGGAA+AGG 0.425116 4_2:-7169289 Msa0586080:CDS
GGTGGGAAGGGATTTGGAGG+AGG 0.425225 4_2:-7169201 Msa0586080:CDS
GGAGCGGCCGGTGGAATTAT+CGG 0.426438 4_2:-7169168 Msa0586080:CDS
GGGAGGAGGTGGAATGGGAG+GGG 0.432996 4_2:-7169223 Msa0586080:CDS
ATGGGAGGAGGTGGATTTGG+AGG 0.433737 4_2:-7169300 Msa0586080:CDS
ATTATTTGCAAAGAATCCTT+AGG 0.450200 4_2:-7169741 Msa0586080:five_prime_UTR
GGAGGTGGATTTGGAGGTGG+AGG 0.460844 4_2:-7169294 Msa0586080:CDS
GGAGGAGGTGGATTTGGAGG+TGG 0.476941 4_2:-7169297 Msa0586080:CDS
TTACCTTCATGTTAGGCCTA+AGG 0.477460 4_2:+7169725 None:intergenic
GGAGGTGGATCTCGAGGAGG+TGG 0.481043 4_2:-7169264 Msa0586080:CDS
AGGGAGGAGGTGGAATGGGA+GGG 0.484959 4_2:-7169224 Msa0586080:CDS
AGTGGAGGTGCAAGCGGAGG+AGG 0.488977 4_2:-7169327 Msa0586080:CDS
GTGGCAGGTGGAGCGGCCGG+TGG 0.496396 4_2:-7169177 Msa0586080:CDS
GCCATTTCAAATGAAGATGA+AGG 0.496545 4_2:-7169661 Msa0586080:CDS
GGAGTGGCAGGTGGAGCGGC+CGG 0.498879 4_2:-7169180 Msa0586080:CDS
GCCGGTGGAATTATCGGCGG+TGG 0.500222 4_2:-7169162 Msa0586080:CDS
GGAGGTGCAAGCGGAGGAGG+TGG 0.508022 4_2:-7169324 Msa0586080:CDS
GGAGGTGGAATAGGAGGTGG+AGG 0.508513 4_2:-7169249 Msa0586080:CDS
TGCAAGCGGAGGAGGTGGAA+TGG 0.508541 4_2:-7169319 Msa0586080:CDS
TTTCGACGGGAGGAGGTGGA+AGG 0.517005 4_2:-7169365 Msa0586080:CDS
AGGAGGAGTGGCAGGTGGAG+CGG 0.523525 4_2:-7169184 Msa0586080:CDS
GAAGGGATTTGGAGGAGGAG+TGG 0.528933 4_2:-7169196 Msa0586080:CDS
CGAGGAGGTGGAATAGGAGG+TGG 0.535172 4_2:-7169252 Msa0586080:CDS
AGCGGAGGAGGTGGAATGGG+AGG 0.541101 4_2:-7169315 Msa0586080:CDS
GCAAATCGCGGTCACAATGG+TGG 0.544739 4_2:-7169120 Msa0586080:CDS
TTCGACGGGAGGAGGTGGAA+GGG 0.547737 4_2:-7169364 Msa0586080:CDS
TCTCGAGGAGGTGGAATAGG+AGG 0.549780 4_2:-7169255 Msa0586080:CDS
AATCCTTAGGCCTAACATGA+AGG 0.550656 4_2:-7169728 Msa0586080:exon
AAGGGAGGAGGTGGATCTCG+AGG 0.551250 4_2:-7169270 Msa0586080:CDS
AAGGGTTGAGAACTGAAGAG+TGG 0.566394 4_2:+7169825 None:intergenic
ACGATAATAGGAAATTTACA+TGG 0.570121 4_2:-7169486 Msa0586080:intron
TTTGGAGGAGGAGTGGCAGG+TGG 0.584933 4_2:-7169189 Msa0586080:CDS
CAAATCGCGGTCACAATGGT+GGG 0.586802 4_2:-7169119 Msa0586080:CDS
GGCGGCGCAGTTGCAAATCG+CGG 0.603738 4_2:-7169132 Msa0586080:CDS
TCCTCCCGTCGAAAACCTCA+TGG 0.608672 4_2:+7169374 None:intergenic
GAGTAATGAACAAGCACATG+AGG 0.616284 4_2:-7169623 Msa0586080:CDS
GGAGGAGGTGGATTTAGTGG+AGG 0.619290 4_2:-7169342 Msa0586080:CDS
GGATTTAGTGGAGGTGCAAG+CGG 0.621029 4_2:-7169333 Msa0586080:CDS
TCCACCGCCGATAATTCCAC+CGG 0.628670 4_2:+7169161 None:intergenic
GGTCACAATGGTGGGTACAA+TGG 0.639906 4_2:-7169111 Msa0586080:CDS
TTTAGTGGAGGTGCAAGCGG+AGG 0.644874 4_2:-7169330 Msa0586080:CDS
GTTGCAAATCGCGGTCACAA+TGG 0.665083 4_2:-7169123 Msa0586080:CDS
GGAGGAGGTGGATCTCGAGG+AGG 0.673141 4_2:-7169267 Msa0586080:CDS
ATCGGCGGTGGAATTGTAGG+CGG 0.690527 4_2:-7169150 Msa0586080:CDS
GCGGCCGGTGGAATTATCGG+CGG 0.704897 4_2:-7169165 Msa0586080:CDS
GTAACATAGAAGTCTCCACA+AGG 0.724906 4_2:-7169458 Msa0586080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTCTGCAAAAATTATATAAA+GGG + chr4_2:7169054-7169073 None:intergenic 20.0%
!! AGTCTGCAAAAATTATATAA+AGG + chr4_2:7169055-7169074 None:intergenic 20.0%
!! AAAAATATTACCTTCATGTT+AGG + chr4_2:7169143-7169162 None:intergenic 20.0%
!!! AAGTTTTTACTTGTTTGAAA+AGG + chr4_2:7169281-7169300 None:intergenic 20.0%
!!! ACGTGTTTTTATTTTAATCT+TGG - chr4_2:7169329-7169348 Msa0586080:CDS 20.0%
!! GTCTGCAAAAATTATATAAA+GGG + chr4_2:7169054-7169073 None:intergenic 20.0%
!! AGTCTGCAAAAATTATATAA+AGG + chr4_2:7169055-7169074 None:intergenic 20.0%
!! AAAAATATTACCTTCATGTT+AGG + chr4_2:7169143-7169162 None:intergenic 20.0%
!!! AAGTTTTTACTTGTTTGAAA+AGG + chr4_2:7169281-7169300 None:intergenic 20.0%
!!! ACGTGTTTTTATTTTAATCT+TGG - chr4_2:7169329-7169348 Msa0586080:CDS 20.0%
!! TATATAATTTTTGCAGACTC+TGG - chr4_2:7169056-7169075 Msa0586080:CDS 25.0%
! ATTATTTGCAAAGAATCCTT+AGG - chr4_2:7169117-7169136 Msa0586080:CDS 25.0%
! TTTACTTGTTTGAAAAGGTA+AGG + chr4_2:7169276-7169295 None:intergenic 25.0%
!! TTGTGTTATTCAACGATAAT+AGG - chr4_2:7169360-7169379 Msa0586080:CDS 25.0%
! ACGATAATAGGAAATTTACA+TGG - chr4_2:7169372-7169391 Msa0586080:CDS 25.0%
! ATAGGAAATTTACATGGAAA+TGG - chr4_2:7169378-7169397 Msa0586080:CDS 25.0%
!! TATATAATTTTTGCAGACTC+TGG - chr4_2:7169056-7169075 Msa0586080:CDS 25.0%
! ATTATTTGCAAAGAATCCTT+AGG - chr4_2:7169117-7169136 Msa0586080:CDS 25.0%
! TTTACTTGTTTGAAAAGGTA+AGG + chr4_2:7169276-7169295 None:intergenic 25.0%
!! TTGTGTTATTCAACGATAAT+AGG - chr4_2:7169360-7169379 Msa0586080:CDS 25.0%
! ACGATAATAGGAAATTTACA+TGG - chr4_2:7169372-7169391 Msa0586080:CDS 25.0%
! ATAGGAAATTTACATGGAAA+TGG - chr4_2:7169378-7169397 Msa0586080:CDS 25.0%
!!! ATTTTTGTTGTTCAACCTTG+TGG + chr4_2:7169418-7169437 None:intergenic 30.0%
GAACAACAAAAATGTGATTG+TGG - chr4_2:7169425-7169444 Msa0586080:CDS 30.0%
AATGTTGAGACACAAAAATG+AGG + chr4_2:7169807-7169826 None:intergenic 30.0%
! TGATTTTATGTATGAGCTTC+TGG - chr4_2:7169826-7169845 Msa0586080:five_prime_UTR 30.0%
!!! ATTTTTGTTGTTCAACCTTG+TGG + chr4_2:7169418-7169437 None:intergenic 30.0%
GAACAACAAAAATGTGATTG+TGG - chr4_2:7169425-7169444 Msa0586080:CDS 30.0%
AATGTTGAGACACAAAAATG+AGG + chr4_2:7169807-7169826 None:intergenic 30.0%
! TGATTTTATGTATGAGCTTC+TGG - chr4_2:7169826-7169845 Msa0586080:five_prime_UTR 30.0%
! GAGCATTTGAGATGATCAAT+AGG + chr4_2:7169175-7169194 None:intergenic 35.0%
GCCATTTCAAATGAAGATGA+AGG - chr4_2:7169197-7169216 Msa0586080:CDS 35.0%
GCCTTCATCTTCATTTGAAA+TGG + chr4_2:7169201-7169220 None:intergenic 35.0%
! ATGAATTGTCTTTTGCCATG+AGG - chr4_2:7169469-7169488 Msa0586080:CDS 35.0%
! GAGCATTTGAGATGATCAAT+AGG + chr4_2:7169175-7169194 None:intergenic 35.0%
GCCATTTCAAATGAAGATGA+AGG - chr4_2:7169197-7169216 Msa0586080:CDS 35.0%
GCCTTCATCTTCATTTGAAA+TGG + chr4_2:7169201-7169220 None:intergenic 35.0%
! ATGAATTGTCTTTTGCCATG+AGG - chr4_2:7169469-7169488 Msa0586080:CDS 35.0%
AATCCTTAGGCCTAACATGA+AGG - chr4_2:7169130-7169149 Msa0586080:CDS 40.0%
TTACCTTCATGTTAGGCCTA+AGG + chr4_2:7169136-7169155 None:intergenic 40.0%
CATGTGCTTGTTCATTACTC+TGG + chr4_2:7169235-7169254 None:intergenic 40.0%
GAGTAATGAACAAGCACATG+AGG - chr4_2:7169235-7169254 Msa0586080:CDS 40.0%
GAACAAGCACATGAGGTTAA+TGG - chr4_2:7169242-7169261 Msa0586080:CDS 40.0%
GTAACATAGAAGTCTCCACA+AGG - chr4_2:7169400-7169419 Msa0586080:CDS 40.0%
! TTTTGCCATGAGGTTTTCGA+CGG - chr4_2:7169479-7169498 Msa0586080:CDS 40.0%
AATCCTTAGGCCTAACATGA+AGG - chr4_2:7169130-7169149 Msa0586080:CDS 40.0%
TTACCTTCATGTTAGGCCTA+AGG + chr4_2:7169136-7169155 None:intergenic 40.0%
CATGTGCTTGTTCATTACTC+TGG + chr4_2:7169235-7169254 None:intergenic 40.0%
GAGTAATGAACAAGCACATG+AGG - chr4_2:7169235-7169254 Msa0586080:CDS 40.0%
GAACAAGCACATGAGGTTAA+TGG - chr4_2:7169242-7169261 Msa0586080:CDS 40.0%
GTAACATAGAAGTCTCCACA+AGG - chr4_2:7169400-7169419 Msa0586080:CDS 40.0%
! TTTTGCCATGAGGTTTTCGA+CGG - chr4_2:7169479-7169498 Msa0586080:CDS 40.0%
AAGGGTTGAGAACTGAAGAG+TGG + chr4_2:7169036-7169055 None:intergenic 45.0%
! TTTGCCATGAGGTTTTCGAC+GGG - chr4_2:7169480-7169499 Msa0586080:intron 45.0%
ATTATCGGCGGTGGAATTGT+AGG - chr4_2:7169705-7169724 Msa0586080:CDS 45.0%
AAGGGTTGAGAACTGAAGAG+TGG + chr4_2:7169036-7169055 None:intergenic 45.0%
! TTTGCCATGAGGTTTTCGAC+GGG - chr4_2:7169480-7169499 Msa0586080:intron 45.0%
ATTATCGGCGGTGGAATTGT+AGG - chr4_2:7169705-7169724 Msa0586080:CDS 45.0%
! GGATTTAGTGGAGGTGCAAG+CGG - chr4_2:7169525-7169544 Msa0586080:intron 50.0%
TGGATTTGGAGGTGGAGGAA+AGG - chr4_2:7169569-7169588 Msa0586080:intron 50.0%
GGATTTGGAGGTGGAGGAAA+GGG - chr4_2:7169570-7169589 Msa0586080:intron 50.0%
TGGAATAGGAGGTGGAGGAA+AGG - chr4_2:7169614-7169633 Msa0586080:intron 50.0%
GGAATAGGAGGTGGAGGAAA+GGG - chr4_2:7169615-7169634 Msa0586080:intron 50.0%
GTTGCAAATCGCGGTCACAA+TGG - chr4_2:7169735-7169754 Msa0586080:five_prime_UTR 50.0%
CAAATCGCGGTCACAATGGT+GGG - chr4_2:7169739-7169758 Msa0586080:five_prime_UTR 50.0%
!! GGTCACAATGGTGGGTACAA+TGG - chr4_2:7169747-7169766 Msa0586080:five_prime_UTR 50.0%
! GGATTTAGTGGAGGTGCAAG+CGG - chr4_2:7169525-7169544 Msa0586080:intron 50.0%
TGGATTTGGAGGTGGAGGAA+AGG - chr4_2:7169569-7169588 Msa0586080:intron 50.0%
GGATTTGGAGGTGGAGGAAA+GGG - chr4_2:7169570-7169589 Msa0586080:intron 50.0%
TGGAATAGGAGGTGGAGGAA+AGG - chr4_2:7169614-7169633 Msa0586080:intron 50.0%
GGAATAGGAGGTGGAGGAAA+GGG - chr4_2:7169615-7169634 Msa0586080:intron 50.0%
GTTGCAAATCGCGGTCACAA+TGG - chr4_2:7169735-7169754 Msa0586080:five_prime_UTR 50.0%
CAAATCGCGGTCACAATGGT+GGG - chr4_2:7169739-7169758 Msa0586080:five_prime_UTR 50.0%
!! GGTCACAATGGTGGGTACAA+TGG - chr4_2:7169747-7169766 Msa0586080:five_prime_UTR 50.0%
TCCTCCCGTCGAAAACCTCA+TGG + chr4_2:7169487-7169506 None:intergenic 55.0%
! ATGAGGTTTTCGACGGGAGG+AGG - chr4_2:7169486-7169505 Msa0586080:intron 55.0%
! AGGGGAGGAGGTGGATTTAG+TGG - chr4_2:7169513-7169532 Msa0586080:intron 55.0%
! GGAGGAGGTGGATTTAGTGG+AGG - chr4_2:7169516-7169535 Msa0586080:intron 55.0%
! TTTAGTGGAGGTGCAAGCGG+AGG - chr4_2:7169528-7169547 Msa0586080:intron 55.0%
! GGAATGGGAGGAGGTGGATT+TGG - chr4_2:7169555-7169574 Msa0586080:intron 55.0%
! ATGGGAGGAGGTGGATTTGG+AGG - chr4_2:7169558-7169577 Msa0586080:intron 55.0%
TTTGGAGGTGGAGGAAAGGG+AGG - chr4_2:7169573-7169592 Msa0586080:intron 55.0%
GGATCTCGAGGAGGTGGAAT+AGG - chr4_2:7169600-7169619 Msa0586080:intron 55.0%
TCTCGAGGAGGTGGAATAGG+AGG - chr4_2:7169603-7169622 Msa0586080:intron 55.0%
ATAGGAGGTGGAGGAAAGGG+AGG - chr4_2:7169618-7169637 Msa0586080:CDS 55.0%
AGGAAAGGGAGGAGGTGGAA+TGG - chr4_2:7169629-7169648 Msa0586080:CDS 55.0%
GGAAAGGGAGGAGGTGGAAT+GGG - chr4_2:7169630-7169649 Msa0586080:CDS 55.0%
GAAGGGATTTGGAGGAGGAG+TGG - chr4_2:7169662-7169681 Msa0586080:CDS 55.0%
TCCACCGCCGATAATTCCAC+CGG + chr4_2:7169700-7169719 None:intergenic 55.0%
ATCGGCGGTGGAATTGTAGG+CGG - chr4_2:7169708-7169727 Msa0586080:CDS 55.0%
GCAAATCGCGGTCACAATGG+TGG - chr4_2:7169738-7169757 Msa0586080:five_prime_UTR 55.0%
TCCTCCCGTCGAAAACCTCA+TGG + chr4_2:7169487-7169506 None:intergenic 55.0%
! ATGAGGTTTTCGACGGGAGG+AGG - chr4_2:7169486-7169505 Msa0586080:intron 55.0%
! AGGGGAGGAGGTGGATTTAG+TGG - chr4_2:7169513-7169532 Msa0586080:intron 55.0%
! GGAGGAGGTGGATTTAGTGG+AGG - chr4_2:7169516-7169535 Msa0586080:intron 55.0%
! TTTAGTGGAGGTGCAAGCGG+AGG - chr4_2:7169528-7169547 Msa0586080:intron 55.0%
! GGAATGGGAGGAGGTGGATT+TGG - chr4_2:7169555-7169574 Msa0586080:intron 55.0%
! ATGGGAGGAGGTGGATTTGG+AGG - chr4_2:7169558-7169577 Msa0586080:intron 55.0%
TTTGGAGGTGGAGGAAAGGG+AGG - chr4_2:7169573-7169592 Msa0586080:intron 55.0%
GGATCTCGAGGAGGTGGAAT+AGG - chr4_2:7169600-7169619 Msa0586080:intron 55.0%
TCTCGAGGAGGTGGAATAGG+AGG - chr4_2:7169603-7169622 Msa0586080:intron 55.0%
ATAGGAGGTGGAGGAAAGGG+AGG - chr4_2:7169618-7169637 Msa0586080:CDS 55.0%
AGGAAAGGGAGGAGGTGGAA+TGG - chr4_2:7169629-7169648 Msa0586080:CDS 55.0%
GGAAAGGGAGGAGGTGGAAT+GGG - chr4_2:7169630-7169649 Msa0586080:CDS 55.0%
GAAGGGATTTGGAGGAGGAG+TGG - chr4_2:7169662-7169681 Msa0586080:CDS 55.0%
TCCACCGCCGATAATTCCAC+CGG + chr4_2:7169700-7169719 None:intergenic 55.0%
ATCGGCGGTGGAATTGTAGG+CGG - chr4_2:7169708-7169727 Msa0586080:CDS 55.0%
GCAAATCGCGGTCACAATGG+TGG - chr4_2:7169738-7169757 Msa0586080:five_prime_UTR 55.0%
! GCCATGAGGTTTTCGACGGG+AGG - chr4_2:7169483-7169502 Msa0586080:intron 60.0%
! AGGTTTTCGACGGGAGGAGG+TGG - chr4_2:7169489-7169508 Msa0586080:intron 60.0%
TTTCGACGGGAGGAGGTGGA+AGG - chr4_2:7169493-7169512 Msa0586080:intron 60.0%
TTCGACGGGAGGAGGTGGAA+GGG - chr4_2:7169494-7169513 Msa0586080:intron 60.0%
TGCAAGCGGAGGAGGTGGAA+TGG - chr4_2:7169539-7169558 Msa0586080:intron 60.0%
GCAAGCGGAGGAGGTGGAAT+GGG - chr4_2:7169540-7169559 Msa0586080:intron 60.0%
! GGAGGAGGTGGATTTGGAGG+TGG - chr4_2:7169561-7169580 Msa0586080:intron 60.0%
! GGAGGTGGATTTGGAGGTGG+AGG - chr4_2:7169564-7169583 Msa0586080:intron 60.0%
AAGGGAGGAGGTGGATCTCG+AGG - chr4_2:7169588-7169607 Msa0586080:intron 60.0%
CGAGGAGGTGGAATAGGAGG+TGG - chr4_2:7169606-7169625 Msa0586080:intron 60.0%
GGAGGTGGAATAGGAGGTGG+AGG - chr4_2:7169609-7169628 Msa0586080:intron 60.0%
AAGGGAGGAGGTGGAATGGG+AGG - chr4_2:7169633-7169652 Msa0586080:CDS 60.0%
AGGGAGGAGGTGGAATGGGA+GGG - chr4_2:7169634-7169653 Msa0586080:CDS 60.0%
GGTGGGAAGGGATTTGGAGG+AGG - chr4_2:7169657-7169676 Msa0586080:CDS 60.0%
GGATTTGGAGGAGGAGTGGC+AGG - chr4_2:7169666-7169685 Msa0586080:CDS 60.0%
TTTGGAGGAGGAGTGGCAGG+TGG - chr4_2:7169669-7169688 Msa0586080:CDS 60.0%
GGAGCGGCCGGTGGAATTAT+CGG - chr4_2:7169690-7169709 Msa0586080:CDS 60.0%
! GCCATGAGGTTTTCGACGGG+AGG - chr4_2:7169483-7169502 Msa0586080:intron 60.0%
! AGGTTTTCGACGGGAGGAGG+TGG - chr4_2:7169489-7169508 Msa0586080:intron 60.0%
TTTCGACGGGAGGAGGTGGA+AGG - chr4_2:7169493-7169512 Msa0586080:intron 60.0%
TTCGACGGGAGGAGGTGGAA+GGG - chr4_2:7169494-7169513 Msa0586080:intron 60.0%
TGCAAGCGGAGGAGGTGGAA+TGG - chr4_2:7169539-7169558 Msa0586080:intron 60.0%
GCAAGCGGAGGAGGTGGAAT+GGG - chr4_2:7169540-7169559 Msa0586080:intron 60.0%
! GGAGGAGGTGGATTTGGAGG+TGG - chr4_2:7169561-7169580 Msa0586080:intron 60.0%
! GGAGGTGGATTTGGAGGTGG+AGG - chr4_2:7169564-7169583 Msa0586080:intron 60.0%
AAGGGAGGAGGTGGATCTCG+AGG - chr4_2:7169588-7169607 Msa0586080:intron 60.0%
CGAGGAGGTGGAATAGGAGG+TGG - chr4_2:7169606-7169625 Msa0586080:intron 60.0%
GGAGGTGGAATAGGAGGTGG+AGG - chr4_2:7169609-7169628 Msa0586080:intron 60.0%
AAGGGAGGAGGTGGAATGGG+AGG - chr4_2:7169633-7169652 Msa0586080:CDS 60.0%
AGGGAGGAGGTGGAATGGGA+GGG - chr4_2:7169634-7169653 Msa0586080:CDS 60.0%
GGTGGGAAGGGATTTGGAGG+AGG - chr4_2:7169657-7169676 Msa0586080:CDS 60.0%
GGATTTGGAGGAGGAGTGGC+AGG - chr4_2:7169666-7169685 Msa0586080:CDS 60.0%
TTTGGAGGAGGAGTGGCAGG+TGG - chr4_2:7169669-7169688 Msa0586080:CDS 60.0%
GGAGCGGCCGGTGGAATTAT+CGG - chr4_2:7169690-7169709 Msa0586080:CDS 60.0%
TCGACGGGAGGAGGTGGAAG+GGG - chr4_2:7169495-7169514 Msa0586080:intron 65.0%
! AGTGGAGGTGCAAGCGGAGG+AGG - chr4_2:7169531-7169550 Msa0586080:intron 65.0%
AGCGGAGGAGGTGGAATGGG+AGG - chr4_2:7169543-7169562 Msa0586080:intron 65.0%
GGAGGAGGTGGAATGGGAGG+AGG - chr4_2:7169546-7169565 Msa0586080:intron 65.0%
GGAGGTGGAATGGGAGGAGG+TGG - chr4_2:7169549-7169568 Msa0586080:intron 65.0%
GGAGGTGGAGGAAAGGGAGG+AGG - chr4_2:7169576-7169595 Msa0586080:intron 65.0%
GGTGGAGGAAAGGGAGGAGG+TGG - chr4_2:7169579-7169598 Msa0586080:intron 65.0%
GGAGGAGGTGGATCTCGAGG+AGG - chr4_2:7169591-7169610 Msa0586080:intron 65.0%
GGAGGTGGATCTCGAGGAGG+TGG - chr4_2:7169594-7169613 Msa0586080:intron 65.0%
GGAGGTGGAGGAAAGGGAGG+AGG - chr4_2:7169576-7169595 Msa0586080:intron 65.0%
GGTGGAGGAAAGGGAGGAGG+TGG - chr4_2:7169579-7169598 Msa0586080:intron 65.0%
GGGAGGAGGTGGAATGGGAG+GGG - chr4_2:7169635-7169654 Msa0586080:CDS 65.0%
GGAGGAGGTGGAATGGGAGG+GGG - chr4_2:7169546-7169565 Msa0586080:intron 65.0%
GAGGTGGAATGGGAGGGGGT+GGG - chr4_2:7169640-7169659 Msa0586080:CDS 65.0%
TGGAATGGGAGGGGGTGGGA+AGG - chr4_2:7169644-7169663 Msa0586080:CDS 65.0%
GGAATGGGAGGGGGTGGGAA+GGG - chr4_2:7169645-7169664 Msa0586080:CDS 65.0%
GGAGGGGGTGGGAAGGGATT+TGG - chr4_2:7169651-7169670 Msa0586080:CDS 65.0%
GGGGGTGGGAAGGGATTTGG+AGG - chr4_2:7169654-7169673 Msa0586080:CDS 65.0%
AGGAGGAGTGGCAGGTGGAG+CGG - chr4_2:7169674-7169693 Msa0586080:CDS 65.0%
GCGGCCGGTGGAATTATCGG+CGG - chr4_2:7169693-7169712 Msa0586080:CDS 65.0%
GCCGGTGGAATTATCGGCGG+TGG - chr4_2:7169696-7169715 Msa0586080:CDS 65.0%
GGCGGCGCAGTTGCAAATCG+CGG - chr4_2:7169726-7169745 Msa0586080:exon 65.0%
TCGACGGGAGGAGGTGGAAG+GGG - chr4_2:7169495-7169514 Msa0586080:intron 65.0%
! AGTGGAGGTGCAAGCGGAGG+AGG - chr4_2:7169531-7169550 Msa0586080:intron 65.0%
AGCGGAGGAGGTGGAATGGG+AGG - chr4_2:7169543-7169562 Msa0586080:intron 65.0%
GGAGGAGGTGGAATGGGAGG+AGG - chr4_2:7169546-7169565 Msa0586080:intron 65.0%
GGAGGTGGAATGGGAGGAGG+TGG - chr4_2:7169549-7169568 Msa0586080:intron 65.0%
GGAGGTGGAGGAAAGGGAGG+AGG - chr4_2:7169576-7169595 Msa0586080:intron 65.0%
GGTGGAGGAAAGGGAGGAGG+TGG - chr4_2:7169579-7169598 Msa0586080:intron 65.0%
GGAGGAGGTGGATCTCGAGG+AGG - chr4_2:7169591-7169610 Msa0586080:intron 65.0%
GGAGGTGGATCTCGAGGAGG+TGG - chr4_2:7169594-7169613 Msa0586080:intron 65.0%
GGAGGTGGAGGAAAGGGAGG+AGG - chr4_2:7169576-7169595 Msa0586080:intron 65.0%
GGTGGAGGAAAGGGAGGAGG+TGG - chr4_2:7169579-7169598 Msa0586080:intron 65.0%
GGGAGGAGGTGGAATGGGAG+GGG - chr4_2:7169635-7169654 Msa0586080:CDS 65.0%
GGAGGAGGTGGAATGGGAGG+GGG - chr4_2:7169546-7169565 Msa0586080:intron 65.0%
GAGGTGGAATGGGAGGGGGT+GGG - chr4_2:7169640-7169659 Msa0586080:CDS 65.0%
TGGAATGGGAGGGGGTGGGA+AGG - chr4_2:7169644-7169663 Msa0586080:CDS 65.0%
GGAATGGGAGGGGGTGGGAA+GGG - chr4_2:7169645-7169664 Msa0586080:CDS 65.0%
GGAGGGGGTGGGAAGGGATT+TGG - chr4_2:7169651-7169670 Msa0586080:CDS 65.0%
GGGGGTGGGAAGGGATTTGG+AGG - chr4_2:7169654-7169673 Msa0586080:CDS 65.0%
AGGAGGAGTGGCAGGTGGAG+CGG - chr4_2:7169674-7169693 Msa0586080:CDS 65.0%
GCGGCCGGTGGAATTATCGG+CGG - chr4_2:7169693-7169712 Msa0586080:CDS 65.0%
GCCGGTGGAATTATCGGCGG+TGG - chr4_2:7169696-7169715 Msa0586080:CDS 65.0%
GGCGGCGCAGTTGCAAATCG+CGG - chr4_2:7169726-7169745 Msa0586080:exon 65.0%
ACGGGAGGAGGTGGAAGGGG+AGG - chr4_2:7169498-7169517 Msa0586080:intron 70.0%
GGAGGAGGTGGAAGGGGAGG+AGG - chr4_2:7169501-7169520 Msa0586080:intron 70.0%
GGAGGTGGAAGGGGAGGAGG+TGG - chr4_2:7169504-7169523 Msa0586080:intron 70.0%
! GGAGGTGCAAGCGGAGGAGG+TGG - chr4_2:7169534-7169553 Msa0586080:intron 70.0%
GGAGGTGGAATGGGAGGGGG+TGG - chr4_2:7169639-7169658 Msa0586080:CDS 70.0%
ACGGGAGGAGGTGGAAGGGG+AGG - chr4_2:7169498-7169517 Msa0586080:intron 70.0%
GGAGGAGGTGGAAGGGGAGG+AGG - chr4_2:7169501-7169520 Msa0586080:intron 70.0%
GGAGGTGGAAGGGGAGGAGG+TGG - chr4_2:7169504-7169523 Msa0586080:intron 70.0%
! GGAGGTGCAAGCGGAGGAGG+TGG - chr4_2:7169534-7169553 Msa0586080:intron 70.0%
GGAGGTGGAATGGGAGGGGG+TGG - chr4_2:7169639-7169658 Msa0586080:CDS 70.0%
GGAGTGGCAGGTGGAGCGGC+CGG - chr4_2:7169678-7169697 Msa0586080:CDS 75.0%
GGAGTGGCAGGTGGAGCGGC+CGG - chr4_2:7169678-7169697 Msa0586080:CDS 75.0%
! GTGGCAGGTGGAGCGGCCGG+TGG - chr4_2:7169681-7169700 Msa0586080:CDS 80.0%
! GTGGCAGGTGGAGCGGCCGG+TGG - chr4_2:7169681-7169700 Msa0586080:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 7169026 7169854 7169026 ID=Msa0586080;Name=Msa0586080
chr4_2 mRNA 7169026 7169854 7169026 ID=Msa0586080-mRNA-1;Parent=Msa0586080;Name=Msa0586080-mRNA-1;_AED=0.44;_eAED=0.45;_QI=120|1|0.5|1|1|1|2|0|196
chr4_2 exon 7169026 7169498 7169026 ID=Msa0586080-mRNA-1:exon:1823;Parent=Msa0586080-mRNA-1
chr4_2 exon 7169617 7169854 7169617 ID=Msa0586080-mRNA-1:exon:1822;Parent=Msa0586080-mRNA-1
chr4_2 five_prime_UTR 7169735 7169854 7169735 ID=Msa0586080-mRNA-1:five_prime_utr;Parent=Msa0586080-mRNA-1
chr4_2 CDS 7169617 7169734 7169617 ID=Msa0586080-mRNA-1:cds;Parent=Msa0586080-mRNA-1
chr4_2 CDS 7169026 7169498 7169026 ID=Msa0586080-mRNA-1:cds;Parent=Msa0586080-mRNA-1
Gene Sequence

>Msa0586080

ATGAAGGTAATATTTTTTGTATTGTTCCTATTGATCATCTCAAATGCTCAAGCCATTTCAAATGAAGATGAAGGCAAAAACATAATCCAGAGTAATGAACAAGCACATGAGGTTAATGGAAATTTACATGGAAATGGTAACATAGAAGTCTCCACAAGGTTGAACAACAAAAATGTGATTGTGGCAAGTAAAAATGAAGATAAACATGAATTGTCTTTTGCCATGAGGTTTTCGACGGGAGGAGGTGGAAGGGGAGGAGGTGGATTTAGTGGAGGTGCAAGCGGAGGAGGTGGAATGGGAGGAGGTGGATTTGGAGGTGGAGGAAAGGGAGGAGGTGGATCTCGAGGAGGTGGAATAGGAGGTGGAGGAAAGGGAGGAGGTGGAATGGGAGGGGGTGGGAAGGGATTTGGAGGAGGAGTGGCAGGTGGAGCGGCCGGTGGAATTATCGGCGGTGGAATTGTAGGCGGCGCAGTTGCAAATCGCGGTCACAATGGTGGGTACAATGGCACTCATAATTCTGCAACAACATTATCTGCAGTGCCTCATTTTTGTGTCTCAACATTGATTTTATGTATGAGCTTCTGGCTTTAG

Protein sequence

>Msa0586080

MKVIFFVLFLLIISNAQAISNEDEGKNIIQSNEQAHEVNGNLHGNGNIEVSTRLNNKNVIVASKNEDKHELSFAMRFSTGGGGRGGGGFSGGASGGGGMGGGGFGGGGKGGGGSRGGGIGGGGKGGGGMGGGGKGFGGGVAGGAAGGIIGGGIVGGAVANRGHNGGYNGTHNSATTLSAVPHFCVSTLILCMSFWL*