AlfalfaGEDB | MS.gene86011

M. sativa cultivar XinJiangDaYe / MS.gene86011

KEGG: K17525
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86011.t1	XP_013444660.1	94	483	12	2	1	467	1	482	3.20E-207	731.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86011.t1	Q9M158	64.7	473	154	7	1	467	1	466	2.7e-117	423.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86011.t1	A0A072TYR3	94.0	483	12	2	1	467	1	482	2.3e-207	731.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene86011	0.828637	8.05E-55	-1.69E-46
MS.gene049171	MS.gene86011	0.82375	1.17E-53	-1.69E-46
MS.gene049173	MS.gene86011	0.834891	2.31E-56	-1.69E-46
MS.gene049217	MS.gene86011	0.88339	4.67E-71	-1.69E-46
MS.gene049222	MS.gene86011	0.853929	1.73E-61	-1.69E-46
MS.gene049285	MS.gene86011	0.876371	1.47E-68	-1.69E-46
MS.gene049320	MS.gene86011	0.866072	3.72E-65	-1.69E-46
MS.gene049351	MS.gene86011	0.834291	3.26E-56	-1.69E-46
MS.gene049356	MS.gene86011	0.842667	2.25E-58	-1.69E-46
MS.gene049369	MS.gene86011	0.877925	4.25E-69	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86011.t1	MTR_8g027835	93.996	483	12	2	1	467	1	482	0.0	886
MS.gene86011.t1	MTR_7g080890	36.994	173	100	3	86	253	95	263	1.05e-27	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86011.t1	AT4G01050	57.783	469	173	12	1	457	1	456	1.35e-150	437
MS.gene86011.t1	AT4G01050	57.783	469	173	12	1	457	42	497	7.93e-150	437
MS.gene86011.t1	AT3G25480	36.686	169	105	1	79	247	63	229	1.92e-27	110

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Find 97 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGAGACAAAACCAA+TGG	0.615330	8.2:+69668982	None:intergenic
AAAGCATTGAGCTTGGATTT+TGG	0.280576	8.2:-69667811	MS.gene86011:CDS
AACCCTGTAATTCTTGCTGG+TGG	0.593908	8.2:-69669024	MS.gene86011:CDS
AAGCAGATTTAAATCCGTTA+AGG	0.366536	8.2:+69667995	None:intergenic
AAGCTCCTTAGGAGCAACCT+TGG	0.546190	8.2:+69666398	None:intergenic
ACACCACCAGCAAGAATTAC+AGG	0.373462	8.2:+69669021	None:intergenic
ACAGAGTTTATTTCAGGAGC+AGG	0.455724	8.2:+69665992	None:intergenic
ACATATGGGTATGGTGAAAG+TGG	0.528445	8.2:+69665923	None:intergenic
ACCAAAGAAAGCATTGAGCT+TGG	0.491928	8.2:-69667818	MS.gene86011:CDS
ACTGAGATTAGACAAGTTGG+TGG	0.549104	8.2:-69668862	MS.gene86011:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCTATCAAATAGGGC+TGG	+	chr8.2:69668897-69668916	None:intergenic	30.0%
AAATGTTCTTCACTACCATT+AGG	+	chr8.2:69668156-69668175	None:intergenic	30.0%
AACATACAACAGAAAAATGG+TGG	+	chr8.2:69667573-69667592	None:intergenic	30.0%
AAGCAGATTTAAATCCGTTA+AGG	+	chr8.2:69666705-69666724	None:intergenic	30.0%
AATATGTGATGTGAGTGTAT+TGG	+	chr8.2:69666822-69666841	None:intergenic	30.0%
AATTATTATGTTTGTGTCGG+TGG	-	chr8.2:69667702-69667721	MS.gene86011:intron	30.0%
ACCAACAATACCTCTATAAT+TGG	-	chr8.2:69667820-69667839	MS.gene86011:CDS	30.0%
AGCAGATTTAAATCCGTTAA+GGG	+	chr8.2:69666704-69666723	None:intergenic	30.0%
ATATGCAATGATCTTCCTAA+TGG	-	chr8.2:69668138-69668157	MS.gene86011:intron	30.0%
ATCCTTTACTTCACATACTT+AGG	+	chr8.2:69668933-69668952	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	69665349	69669370	69665349	ID=MS.gene86011
chr8.2	mRNA	69665349	69669370	69665349	ID=MS.gene86011.t1;Parent=MS.gene86011
chr8.2	exon	69668730	69669370	69668730	ID=MS.gene86011.t1.exon1;Parent=MS.gene86011.t1
chr8.2	CDS	69668730	69669370	69668730	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1
chr8.2	exon	69667954	69668056	69667954	ID=MS.gene86011.t1.exon2;Parent=MS.gene86011.t1
chr8.2	CDS	69667954	69668056	69667954	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1
chr8.2	exon	69667777	69667863	69667777	ID=MS.gene86011.t1.exon3;Parent=MS.gene86011.t1
chr8.2	CDS	69667777	69667863	69667777	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1
chr8.2	exon	69667413	69667484	69667413	ID=MS.gene86011.t1.exon4;Parent=MS.gene86011.t1
chr8.2	CDS	69667413	69667484	69667413	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1
chr8.2	exon	69667235	69667309	69667235	ID=MS.gene86011.t1.exon5;Parent=MS.gene86011.t1
chr8.2	CDS	69667235	69667309	69667235	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1
chr8.2	exon	69666383	69666463	69666383	ID=MS.gene86011.t1.exon6;Parent=MS.gene86011.t1
chr8.2	CDS	69666383	69666463	69666383	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1
chr8.2	exon	69665925	69666221	69665925	ID=MS.gene86011.t1.exon7;Parent=MS.gene86011.t1
chr8.2	CDS	69665925	69666221	69665925	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1
chr8.2	exon	69665349	69665396	69665349	ID=MS.gene86011.t1.exon8;Parent=MS.gene86011.t1
chr8.2	CDS	69665349	69665396	69665349	ID=cds.MS.gene86011.t1;Parent=MS.gene86011.t1

Gene Sequence

>MS.gene86011

ATGGAGGCCCTCAATTCTACTATTTTCACCCCTCTTTCTGTGCTATCTGACAGAACAAAACACACACACCCCACAAAATTTTCATGCAAAGCTTCAAACTTTTCAACTTCAATCAACAAAAAACAGAACTTAAGAGAGTTTCTATCAAAGAATTTTCAAAAGGGTCTTTTTCTTGCTGCAGCTTCAGTTGTGAATGTTAACAATGGTGAATTTGCCAATGCTTTAACATATGAAGAAGCATTAGGACAATCTCCTAGTGCTTCTGGTGGTGGTGACATTGATGTTAATGGTTTTGTAGATAGTGTTATAGGCTTTGCAACTGAGAACCCTGTAATTCTTGCTGGTGGTGTAGCTATATTGGCAGTGCCATTGGTTTTGTCTCAGATTTTGAAGAAACCTAAGGCTTGGGGTGTTGAATCTGCTAAAAATGCTTATGCAAAATTAGGTGCTGATGGGAATGCTCAGTTGCTTGATATAAGAGGTTTGACTGAGATTAGACAAGTTGGTGGACCAAATGTTGGTGGTTTGAAGAAGAAATCAGTGGCAGTAACTTATAAAGGTGATGATAAGCCAGGGTTTTTGAAGAAGCTTTCTTTGAAGTTTAAGGAGCCTGAGAATACTACATTGTTCATTCTTGACAAGTAAGGATAACAAAGATCAATTTTATTTGCAGCATTTTGGTATTTTGTATATTTTGATCCATGCTTATGAATTATGATATAGAATTAGAATCTATTTACTTTGTAAAAATATTTTCTGAGTTACTAACAAAGAGATGATAGACTGTAGTAAATAACTGTGATATAGAAAAATTGGAAGATAAGTTAGGAAGAATGCATTTTTAGTAAATAATTCTGATGTCCGACATGTGTTAGTGTCCGACATGATACCAACATATGTGATTACATTCAATTAATTAATTTTCTTAAATTATTATTAGTGGCGACGTATTGATGTCAGTGTTGTATCCGGTGTCTGTGTTAGTGCTTCATAGTCCAAATGAGTGTAGGGGAAACTTTAGAACTGAGAATGTAACCAAAAGCTGAAGTAATGATCAAACAATGACCACAATTTTCTGTTTGGTGAAAAATGTTTAGTTTTACCAGTCACCACATAGGGTACATAGGCTATGTTCTTTGAGGAGCATTAGTAAAAATAAAATAAAATAAAATTTGTCAAAGCCGATACATCTGCAGTCTGCGTAATTTGACTTAACATGTGGGGAAAATTAATCACGTAAATTTATTGTTTCTTCTTGCACTTTGCAAAAGAATATACTTGAAGCTGATTGAGTGAACTTGTGATGGAAGCCAGATTTGATGGGAACTCTGAACTGGTTGCAGAGTTAGTTACCCTTAACGGATTTAAATCTGCTTATGCAATTAAGGATGGTGCAGAAGGACCACAAGGATGGCAGGTATTTATTTTTCATATTTATTATAATTCTAATTCCAAAATTTTCTATCTTCGCCAATACACTCACATCACATATTCTTGAATTCTGCAGAATAGTGGTCTTCCTTGGACTGAACCAAAGAAAGCATTGAGCTTGGATTTTGGCAGTTTGACAGATACTATCAATGATGCAATCGGAGTATGTATCTTGGATGTATCTATTCGTGATTGTAATATACAATGTTGAAGCACGTGCAAAATACAACTATTAAGTTTTCAGACTGCAAAACAGTTGGAAAAACCCTTCTATTAAATTAAAGAATACTATGGATGTACTCAAACTCTCTCTTGGAGAAAACAAAATTTGAGCTTTCTCAAATTAAGGATTTTTGCAAGCAAGAAAGGGAACATAGGAAACTGAATAAAATGTACTTAAACATCGTTAAATCTTAGCTTTTTGAGTGTTTATAATTAATGTTGGTTGATTGCAGGAATCTGATGGCTTGGCCGTTACTCTTGGGATTGCTGCAGCTACTGGATTGGGTGTATTAGCCTTTTCTGAGGTTGGTCCAATGAGTTATTACTTATTGCCTTTTCTCAACATGCAATAATACATTATGGTATGACTCTACTGACATATTTTTCGTGACATTACTCTATTTGTAGGTAGAAACAATTCTCCAACTTGTAGGATCAGCTGCAATTGTTCAGTTTGCAAGCAAGAAGCTTCTATTTGCTGAGGTAAGTTTGTTTTTCTATGCAGGATGGATTTATCTTGTATATTATCATCAATTCTGTTGAACAATGCACTGTTGAATCCAGAAAGCCACCATTTTTCTGTTGTATGTTTATGCATTAATTTTATAATAACTACTAGATGTTAACGTAACCATAACACGAGAGTGTAAATTATAATATATGAGTTAGTTTTGTAAGGGGTTGTGTTTGAATTTTAATAAATTATTATGTTTGTGTCGGTGGCTAAGATTAAGTGAAATAGGTAAACAGGAAAGTTAATTTTGTGCCAAATAGGTAAAAGAAATTCAAAATGGATCCCCTGCAGCACCATCTGCCTCACCAACAATACCTCTATAATTGGATTAATCTTACGGTTTAAGTGTTGTTGGAGGGGCAGTAGAGTATCTGAACCTGAAAAAGATATGATCTTATATAAAATTATGAGTATTAAACAATAATAATAAATGAAAAGGATAATTGAATACTAAAATAATATATAATAAATAGAATTACATAAACAAGAAGAGTTGGTTGAATTTGATGAGTAAATCGAGAGACCTTGACTTTGCGTCATTAGAAAAGCAATAAGTTTCATGATTCATAAACCGTGTTTGCTTATGTTTACTTCGAAGCAAAATGTTTTCCTCTACTCTCTCATATGCAATGATCTTCCTAATGGTAGTGAAGAACATTTTTCTTATTTATCTTTAGTACAATGTAAACTATTATTAATTTGTTTTTCCTTTTTTCATTAAATTTTTAATTTGATGGCAGGACCGGAAGAAAACACTAAAACAAGTTAATGAGTTTTTGAACACCAAGGTTGCTCCTAAGGAGCTTGCTGATGAAATAAAGGTGCTTCAGATTTATCTTAGTCAATATCCTTATAAATTAGTTGCAAGAGCAATGCATCACAATTGACTGTGTATTATATAAATTTATCTTATGTGACTCTTCTTGTTTTTCCCTTCCTGTTTAATATTGTTTTCTTTGAATGGAATTTCCGGGAAAATTAGGACATCGGAAAGGCTCTTCTACCAACCTCCACCAACAATAAGACTCTCCCTGCACCAACAGAAAATAGTCCAGAGCTTGCTACAGCTGGCGGAACTGTATTGAACGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCAGCAGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCATCAGCAGAACCTGCTCCTGAAATAAACTCTGTGCCGAAAACTGAAACAAAGGCAGAGTCAATTCCTGTGCAGCCTAAACCACTTTCACCATACCCATATGTAATGTCATAATTTCATCGCTCTTTTGAATTTTTCATTTTGATGCTTTGATTATACATGCTTTTTGCAAAAAAAAAAAAAAAATTGCATATAACCTTTCCAGCCCTATTTGATAGATTTTTGGATCCGTCCCTGCCTAAGTATGTGAAGTAAAGGATGACGTGCCAATTACATACTTAGGCAGAAGACAAATAATTGTATTGTCATTCTCTCATGTTTTCCTGCATTTTGCAATTACACATAGTTCTCATTTCTGAGTCCCATTTTTGCAAGAAAAGGATGAAATACTTGATGAAATAGGAGACAATGTCCGGTGCTGACGGTATACCAACACAACCCATGTAGTTACGTTCAATTAATTTATTTTCTCAAATTATTATCGGTGTTGATGTGCCAATGTCTATATTGTGTCCGGTGTCTGTGAAAGTGTTTCAATAAGTTTTAAATGTTGCGTTAATGTATGAAAGCCAATTTTGTTTTATATTCATGTTCCTAACACATACTTTGCCTCTCTTTTTTGACTTGCAGTATCCCGATTTCAAACCTCCTTCATCTCCATCTCCTTCAAAGCCCTAG

Protein sequence

>MS.gene86011.t1

MEALNSTIFTPLSVLSDRTKHTHPTKFSCKASNFSTSINKKQNLREFLSKNFQKGLFLAAASVVNVNNGEFANALTYEEALGQSPSASGGGDIDVNGFVDSVIGFATENPVILAGGVAILAVPLVLSQILKKPKAWGVESAKNAYAKLGADGNAQLLDIRGLTEIRQVGGPNVGGLKKKSVAVTYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTLNGFKSAYAIKDGAEGPQGWQNSGLPWTEPKKALSLDFGSLTDTINDAIGESDGLAVTLGIAAATGLGVLAFSEVETILQLVGSAAIVQFASKKLLFAEDRKKTLKQVNEFLNTKVAPKELADEIKDIGKALLPTSTNNKTLPAPTENSPELATAGGTVLNAEATPEIVPETKVEAAAEATPEIVPETKVEASAEPAPEINSVPKTETKAESIPVQPKPLSPYPYYPDFKPPSSPSPSKP