Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567160 | XP_013446772.1 | 86.364 | 154 | 9 | 1 | 1 | 142 | 137 | 290 | 5.07e-81 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567160 | A0A072TTF9 | 86.364 | 154 | 9 | 1 | 1 | 142 | 137 | 290 | 2.42e-81 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0567160 | 0.822028 | 2.948801e-53 | -8.615850e-47 |
| Msa0008850 | Msa0567160 | 0.822424 | 2.386933e-53 | -8.615850e-47 |
| Msa0017120 | Msa0567160 | 0.816689 | 4.858392e-52 | -8.615850e-47 |
| Msa0021300 | Msa0567160 | 0.802933 | 4.434390e-49 | -8.615850e-47 |
| Msa0027540 | Msa0567160 | 0.824071 | 9.841981e-54 | -8.615850e-47 |
| Msa0030000 | Msa0567160 | 0.809389 | 1.938500e-50 | -8.615850e-47 |
| Msa0030730 | Msa0567160 | 0.808966 | 2.388061e-50 | -8.615850e-47 |
| Msa0043680 | Msa0567160 | 0.800395 | 1.470591e-48 | -8.615850e-47 |
| Msa0047470 | Msa0567160 | 0.806132 | 9.543196e-50 | -8.615850e-47 |
| Msa0065390 | Msa0567160 | 0.806860 | 6.701340e-50 | -8.615850e-47 |
| Msa0075310 | Msa0567160 | 0.822291 | 2.563010e-53 | -8.615850e-47 |
| Msa0079250 | Msa0567160 | 0.834365 | 3.126697e-56 | -8.615850e-47 |
| Msa0089210 | Msa0567160 | 0.805747 | 1.149769e-49 | -8.615850e-47 |
| Msa0092660 | Msa0567160 | 0.807685 | 4.480438e-50 | -8.615850e-47 |
| Msa0092730 | Msa0567160 | 0.804632 | 1.968215e-49 | -8.615850e-47 |
| Msa0110710 | Msa0567160 | 0.804824 | 1.794641e-49 | -8.615850e-47 |
| Msa0120330 | Msa0567160 | 0.805962 | 1.036378e-49 | -8.615850e-47 |
| Msa0125230 | Msa0567160 | 0.837610 | 4.697352e-57 | -8.615850e-47 |
| Msa0126900 | Msa0567160 | 0.805698 | 1.177064e-49 | -8.615850e-47 |
| Msa0135980 | Msa0567160 | 0.803024 | 4.246598e-49 | -8.615850e-47 |
| Msa0137600 | Msa0567160 | 0.800458 | 1.427790e-48 | -8.615850e-47 |
| Msa0143490 | Msa0567160 | 0.806485 | 8.041425e-50 | -8.615850e-47 |
| Msa0143970 | Msa0567160 | 0.800785 | 1.224298e-48 | -8.615850e-47 |
| Msa0146470 | Msa0567160 | 0.814884 | 1.227280e-51 | -8.615850e-47 |
| Msa0149500 | Msa0567160 | 0.826863 | 2.147293e-54 | -8.615850e-47 |
| Msa0157020 | Msa0567160 | 0.808346 | 3.240842e-50 | -8.615850e-47 |
| Msa0162030 | Msa0567160 | 0.805148 | 1.535566e-49 | -8.615850e-47 |
| Msa0163550 | Msa0567160 | 0.808378 | 3.190240e-50 | -8.615850e-47 |
| Msa0168100 | Msa0567160 | 0.808035 | 3.774591e-50 | -8.615850e-47 |
| Msa0185390 | Msa0567160 | 0.820639 | 6.167383e-53 | -8.615850e-47 |
| Msa0194570 | Msa0567160 | 0.822080 | 2.867713e-53 | -8.615850e-47 |
| Msa0207000 | Msa0567160 | 0.830127 | 3.498197e-55 | -8.615850e-47 |
| Msa0222120 | Msa0567160 | 0.804115 | 2.521998e-49 | -8.615850e-47 |
| Msa0223390 | Msa0567160 | 0.801538 | 8.589085e-49 | -8.615850e-47 |
| Msa0224960 | Msa0567160 | 0.801722 | 7.872489e-49 | -8.615850e-47 |
| Msa0225010 | Msa0567160 | 0.807482 | 4.947294e-50 | -8.615850e-47 |
| Msa0382500 | Msa0567160 | 0.820409 | 6.964924e-53 | -8.615850e-47 |
| Msa0396970 | Msa0567160 | 0.811358 | 7.286496e-51 | -8.615850e-47 |
| Msa0413740 | Msa0567160 | 0.817777 | 2.765662e-52 | -8.615850e-47 |
| Msa0417630 | Msa0567160 | 0.817545 | 3.119207e-52 | -8.615850e-47 |
| Msa0421800 | Msa0567160 | 0.830900 | 2.262811e-55 | -8.615850e-47 |
| Msa0427050 | Msa0567160 | 0.809770 | 1.605299e-50 | -8.615850e-47 |
| Msa0432680 | Msa0567160 | 0.826917 | 2.085411e-54 | -8.615850e-47 |
| Msa0482680 | Msa0567160 | 0.800437 | 1.441773e-48 | -8.615850e-47 |
| Msa0252180 | Msa0567160 | 0.800812 | 1.209137e-48 | -8.615850e-47 |
| Msa0263620 | Msa0567160 | 0.800931 | 1.143067e-48 | -8.615850e-47 |
| Msa0267760 | Msa0567160 | 0.807217 | 5.629106e-50 | -8.615850e-47 |
| Msa0269360 | Msa0567160 | 0.809736 | 1.632858e-50 | -8.615850e-47 |
| Msa0288240 | Msa0567160 | 0.818345 | 2.057843e-52 | -8.615850e-47 |
| Msa0288330 | Msa0567160 | 0.810809 | 9.581228e-51 | -8.615850e-47 |
| Msa0298940 | Msa0567160 | 0.808111 | 3.635741e-50 | -8.615850e-47 |
| Msa0298970 | Msa0567160 | 0.805641 | 1.210433e-49 | -8.615850e-47 |
| Msa0301180 | Msa0567160 | 0.817110 | 3.908893e-52 | -8.615850e-47 |
| Msa0304870 | Msa0567160 | 0.805379 | 1.373680e-49 | -8.615850e-47 |
| Msa0318000 | Msa0567160 | 0.801241 | 9.878417e-49 | -8.615850e-47 |
| Msa0333900 | Msa0567160 | 0.821284 | 4.382537e-53 | -8.615850e-47 |
| Msa0334020 | Msa0567160 | 0.818269 | 2.140881e-52 | -8.615850e-47 |
| Msa0336270 | Msa0567160 | 0.822628 | 2.139564e-53 | -8.615850e-47 |
| Msa0339860 | Msa0567160 | 0.801171 | 1.021154e-48 | -8.615850e-47 |
| Msa0341260 | Msa0567160 | 0.804375 | 2.226625e-49 | -8.615850e-47 |
| Msa0482960 | Msa0567160 | 0.801918 | 7.178431e-49 | -8.615850e-47 |
| Msa0505390 | Msa0567160 | 0.813425 | 2.576824e-51 | -8.615850e-47 |
| Msa0514260 | Msa0567160 | 0.833980 | 3.905080e-56 | -8.615850e-47 |
| Msa0524050 | Msa0567160 | 0.805342 | 1.398104e-49 | -8.615850e-47 |
| Msa0524090 | Msa0567160 | 0.824711 | 6.959879e-54 | -8.615850e-47 |
| Msa0524120 | Msa0567160 | 0.830847 | 2.331420e-55 | -8.615850e-47 |
| Msa0526710 | Msa0567160 | 0.808055 | 3.737492e-50 | -8.615850e-47 |
| Msa0535450 | Msa0567160 | 0.809481 | 1.852662e-50 | -8.615850e-47 |
| Msa0546380 | Msa0567160 | 0.828044 | 1.118789e-54 | -8.615850e-47 |
| Msa0546740 | Msa0567160 | 0.828038 | 1.122276e-54 | -8.615850e-47 |
| Msa0567160 | Msa0576420 | 0.830982 | 2.160307e-55 | -8.615850e-47 |
| Msa0567160 | Msa0583940 | 0.809648 | 1.705152e-50 | -8.615850e-47 |
| Msa0567160 | Msa0606060 | 0.827370 | 1.624422e-54 | -8.615850e-47 |
| Msa0567160 | Msa0619330 | 0.835395 | 1.720182e-56 | -8.615850e-47 |
| Msa0567160 | Msa0624730 | 0.800525 | 1.383764e-48 | -8.615850e-47 |
| Msa0567160 | Msa0642650 | 0.820816 | 5.615786e-53 | -8.615850e-47 |
| Msa0567160 | Msa0659040 | 0.813040 | 3.130020e-51 | -8.615850e-47 |
| Msa0567160 | Msa0674220 | 0.808202 | 3.476940e-50 | -8.615850e-47 |
| Msa0567160 | Msa0681890 | 0.829891 | 3.994650e-55 | -8.615850e-47 |
| Msa0567160 | Msa0686610 | 0.824367 | 8.387369e-54 | -8.615850e-47 |
| Msa0567160 | Msa0702070 | 0.829264 | 5.675069e-55 | -8.615850e-47 |
| Msa0567160 | Msa0702120 | 0.820088 | 8.249531e-53 | -8.615850e-47 |
| Msa0567160 | Msa0703590 | 0.842825 | 2.041217e-58 | -8.615850e-47 |
| Msa0567160 | Msa0703720 | 0.824892 | 6.310544e-54 | -8.615850e-47 |
| Msa0567160 | Msa0703760 | 0.809349 | 1.977516e-50 | -8.615850e-47 |
| Msa0567160 | Msa0704570 | 0.807005 | 6.242154e-50 | -8.615850e-47 |
| Msa0567160 | Msa0704990 | 0.801658 | 8.114799e-49 | -8.615850e-47 |
| Msa0567160 | Msa0707780 | 0.817068 | 3.994538e-52 | -8.615850e-47 |
| Msa0567160 | Msa0709190 | 0.840088 | 1.073480e-57 | -8.615850e-47 |
| Msa0567160 | Msa0709480 | 0.819105 | 1.382691e-52 | -8.615850e-47 |
| Msa0567160 | Msa0730180 | 0.821314 | 4.311491e-53 | -8.615850e-47 |
| Msa0567160 | Msa0770430 | 0.806122 | 9.586898e-50 | -8.615850e-47 |
| Msa0567160 | Msa0772210 | 0.812419 | 4.281305e-51 | -8.615850e-47 |
| Msa0567160 | Msa0811510 | 0.803431 | 3.498167e-49 | -8.615850e-47 |
| Msa0567160 | Msa0851740 | 0.819774 | 9.731868e-53 | -8.615850e-47 |
| Msa0567160 | Msa0872660 | 0.815556 | 8.702865e-52 | -8.615850e-47 |
| Msa0567160 | Msa0890250 | 0.805018 | 1.634727e-49 | -8.615850e-47 |
| Msa0567160 | Msa0906720 | 0.826067 | 3.324330e-54 | -8.615850e-47 |
| Msa0567160 | Msa0907700 | 0.856965 | 2.250816e-62 | -8.615850e-47 |
| Msa0567160 | Msa0925160 | 0.828527 | 8.557489e-55 | -8.615850e-47 |
| Msa0567160 | Msa0938970 | 0.823355 | 1.448759e-53 | -8.615850e-47 |
| Msa0567160 | Msa0955260 | 0.822533 | 2.251705e-53 | -8.615850e-47 |
| Msa0567160 | Msa0971860 | 0.801870 | 7.342777e-49 | -8.615850e-47 |
| Msa0567160 | Msa0975080 | 0.800013 | 1.758425e-48 | -8.615850e-47 |
| Msa0567160 | Msa0975910 | 0.826632 | 2.439304e-54 | -8.615850e-47 |
| Msa0567160 | Msa0990520 | 0.817968 | 2.503965e-52 | -8.615850e-47 |
| Msa0567160 | Msa1002040 | 0.822806 | 1.944997e-53 | -8.615850e-47 |
| Msa0567160 | Msa1037000 | 0.803300 | 3.723908e-49 | -8.615850e-47 |
| Msa0567160 | Msa1038320 | 0.813109 | 3.023440e-51 | -8.615850e-47 |
| Msa0567160 | Msa1040770 | 0.815903 | 7.283024e-52 | -8.615850e-47 |
| Msa0567160 | Msa1061180 | 0.804229 | 2.388101e-49 | -8.615850e-47 |
| Msa0567160 | Msa1081850 | 0.835467 | 1.649595e-56 | -8.615850e-47 |
| Msa0567160 | Msa1089530 | 0.801456 | 8.929788e-49 | -8.615850e-47 |
| Msa0567160 | Msa1115330 | 0.803102 | 4.091225e-49 | -8.615850e-47 |
| Msa0567160 | Msa1125780 | 0.827530 | 1.486956e-54 | -8.615850e-47 |
| Msa0567160 | Msa1125950 | 0.829918 | 3.933969e-55 | -8.615850e-47 |
| Msa0567160 | Msa1129560 | 0.802192 | 6.304595e-49 | -8.615850e-47 |
| Msa0567160 | Msa1132520 | 0.841431 | 4.773137e-58 | -8.615850e-47 |
| Msa0567160 | Msa1140010 | 0.801622 | 8.254479e-49 | -8.615850e-47 |
| Msa0567160 | Msa1149760 | 0.819326 | 1.231398e-52 | -8.615850e-47 |
| Msa0567160 | Msa1166180 | 0.826867 | 2.142546e-54 | -8.615850e-47 |
| Msa0567160 | Msa1166280 | 0.823624 | 1.252795e-53 | -8.615850e-47 |
| Msa0567160 | Msa1171340 | 0.830740 | 2.476625e-55 | -8.615850e-47 |
| Msa0567160 | Msa1181380 | 0.821225 | 4.520954e-53 | -8.615850e-47 |
| Msa0567160 | Msa1183390 | 0.801886 | 7.286068e-49 | -8.615850e-47 |
| Msa0567160 | Msa1210770 | 0.810287 | 1.242626e-50 | -8.615850e-47 |
| Msa0567160 | Msa1214900 | 0.811026 | 8.601272e-51 | -8.615850e-47 |
| Msa0567160 | Msa1220450 | -0.810739 | 9.923822e-51 | -8.615850e-47 |
| Msa0567160 | Msa1220460 | -0.811741 | 6.014468e-51 | -8.615850e-47 |
| Msa0567160 | Msa1220480 | -0.810409 | 1.169442e-50 | -8.615850e-47 |
| Msa0567160 | Msa1226600 | 0.811120 | 8.205828e-51 | -8.615850e-47 |
| Msa0567160 | Msa1262310 | 0.805955 | 1.039420e-49 | -8.615850e-47 |
| Msa0567160 | Msa1265960 | 0.803820 | 2.903892e-49 | -8.615850e-47 |
| Msa0567160 | Msa1276080 | 0.803835 | 2.883653e-49 | -8.615850e-47 |
| Msa0567160 | Msa1299160 | 0.800869 | 1.177379e-48 | -8.615850e-47 |
| Msa0567160 | Msa1309100 | 0.810251 | 1.264731e-50 | -8.615850e-47 |
| Msa0567160 | Msa1325650 | 0.803143 | 4.012250e-49 | -8.615850e-47 |
| Msa0567160 | Msa1352290 | 0.845499 | 3.908518e-59 | -8.615850e-47 |
| Msa0567160 | Msa1367940 | 0.803819 | 2.906453e-49 | -8.615850e-47 |
| Msa0567160 | Msa1376530 | 0.806952 | 6.407531e-50 | -8.615850e-47 |
| Msa0567160 | Msa1376640 | 0.815740 | 7.917570e-52 | -8.615850e-47 |
| Msa0567160 | Msa1381130 | 0.819838 | 9.411752e-53 | -8.615850e-47 |
| Msa0567160 | Msa1385900 | 0.801774 | 7.683423e-49 | -8.615850e-47 |
| Msa0567160 | Msa1410170 | 0.812503 | 4.102296e-51 | -8.615850e-47 |
| Msa0567160 | Msa1412080 | 0.831457 | 1.651812e-55 | -8.615850e-47 |
| Msa0567160 | Msa1418200 | 0.807275 | 5.472231e-50 | -8.615850e-47 |
| Msa0567160 | Msa1426870 | 0.818255 | 2.156125e-52 | -8.615850e-47 |
| Msa0567160 | Msa1428420 | 0.812371 | 4.385596e-51 | -8.615850e-47 |
| Msa0567160 | Msa1431000 | 0.804579 | 2.018860e-49 | -8.615850e-47 |
| Msa0567160 | Msa1432640 | 0.816190 | 6.284621e-52 | -8.615850e-47 |
| Msa0567160 | Msa1435470 | 0.814022 | 1.903309e-51 | -8.615850e-47 |
| Msa0567160 | Msa1439800 | 0.807106 | 5.942730e-50 | -8.615850e-47 |
| Msa0567160 | Msa1449880 | 0.804401 | 2.199196e-49 | -8.615850e-47 |
| Msa0567160 | Msa1456810 | 0.813463 | 2.527270e-51 | -8.615850e-47 |
| Msa0567160 | Msa1458920 | 0.818473 | 1.924451e-52 | -8.615850e-47 |
| Msa0567160 | Msa1463970 | 0.810072 | 1.382370e-50 | -8.615850e-47 |
| Msa0567160 | Msa1464560 | 0.828788 | 7.399792e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567160 | MtrunA17_Chr8g0381861 | 86.364 | 154 | 9 | 1 | 1 | 142 | 137 | 290 | 4.67e-85 | 250 |
| Msa0567160 | MtrunA17_Chr3g0123831 | 54.015 | 137 | 41 | 3 | 2 | 123 | 135 | 264 | 4.01e-37 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567160 | AT5G65250.1 | 59.350 | 123 | 37 | 2 | 1 | 111 | 150 | 271 | 4.37e-38 | 131 |
Find 69 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATTTACTTTCATTTC+AGG | 0.176402 | 4_1:+68474329 | Msa0567160:three_prime_UTR |
| GTCTAGGCAGCTTGAGAAAT+TGG | 0.177372 | 4_1:+68471513 | Msa0567160:CDS |
| CTGGTTCTGTGGTAAATTTC+GGG | 0.222924 | 4_1:+68474282 | Msa0567160:three_prime_UTR |
| TTTAACCCAAGCTTCAAATT+TGG | 0.231116 | 4_1:-68474028 | None:intergenic |
| AGCCCTGCAATCAGACATTT+TGG | 0.237492 | 4_1:+68473404 | Msa0567160:CDS |
| CCGTGTTCTTCACTAGTTTC+AGG | 0.238520 | 4_1:-68473948 | None:intergenic |
| TTTATGTGCCAATAAAATTC+TGG | 0.256690 | 4_1:-68474154 | None:intergenic |
| TCTGGTTCTGTGGTAAATTT+CGG | 0.258448 | 4_1:+68474281 | Msa0567160:three_prime_UTR |
| TTTGCAGAGAATTGAGAAAT+TGG | 0.262448 | 4_1:+68471450 | Msa0567160:CDS |
| GGCTAATGCTCTTGCGGCCT+CGG | 0.289526 | 4_1:-68473385 | None:intergenic |
| GAACGGTGGGGTTTCTGTTT+CGG | 0.293881 | 4_1:+68471417 | Msa0567160:CDS |
| TTCATCCCTCTGTAATTTGA+TGG | 0.314171 | 4_1:-68474061 | None:intergenic |
| AGAGTAATGCGACGGTTGTT+AGG | 0.336551 | 4_1:+68471485 | Msa0567160:CDS |
| AGCTTGAGAAATTGGGGATT+AGG | 0.351998 | 4_1:+68471521 | Msa0567160:CDS |
| ACTTTGACTTTGTGTGTAGA+TGG | 0.353715 | 4_1:-68474129 | None:intergenic |
| TAGATTAGTAACTGAGCTAT+TGG | 0.353976 | 4_1:+68474471 | Msa0567160:three_prime_UTR |
| TCTAGGCAGCTTGAGAAATT+GGG | 0.354881 | 4_1:+68471514 | Msa0567160:CDS |
| TCTCCAAAATGTCTGATTGC+AGG | 0.356336 | 4_1:-68473407 | None:intergenic |
| AGATTAGTAACTGAGCTATT+GGG | 0.356741 | 4_1:+68474472 | Msa0567160:three_prime_UTR |
| GTCCACCAAATTTGAAGCTT+GGG | 0.368340 | 4_1:+68474023 | Msa0567160:exon |
| TTGAAGCTTGGGTTAAACTA+AGG | 0.401346 | 4_1:+68474034 | Msa0567160:exon |
| TGGGGTTTCTGTTTCGGAGG+TGG | 0.403058 | 4_1:+68471423 | Msa0567160:CDS |
| ATGAGATAGGATTGAATTCA+TGG | 0.407376 | 4_1:+68474511 | Msa0567160:three_prime_UTR |
| TTGAATGAAGACTGCAGCTC+TGG | 0.409148 | 4_1:+68473350 | Msa0567160:intron |
| TAATGATTACACATTTACTA+AGG | 0.435911 | 4_1:+68474177 | Msa0567160:three_prime_UTR |
| GGTCCACCAAATTTGAAGCT+TGG | 0.435933 | 4_1:+68474022 | Msa0567160:exon |
| GAATCTCAATGCGGTAAATC+AGG | 0.435977 | 4_1:+68473998 | Msa0567160:CDS |
| GAGTAATGCGACGGTTGTTA+GGG | 0.448272 | 4_1:+68471486 | Msa0567160:CDS |
| AACCCAAGCTTCAAATTTGG+TGG | 0.451264 | 4_1:-68474025 | None:intergenic |
| GCAGAGAATTGAGAAATTGG+AGG | 0.472739 | 4_1:+68471453 | Msa0567160:CDS |
| TTGCGAAGGCAGGTAAGCTA+TGG | 0.479688 | 4_1:+68473916 | Msa0567160:CDS |
| CGGTGATTAGGAGAAGGAAA+TGG | 0.490410 | 4_1:+68471380 | None:intergenic |
| ATTCTTGCAATTGCGAAGGC+AGG | 0.502036 | 4_1:+68473906 | Msa0567160:CDS |
| TAGGATTGAATTCATGGTGG+TGG | 0.502520 | 4_1:+68474517 | Msa0567160:three_prime_UTR |
| GGAGAATTGTCTGAACTCTC+TGG | 0.503072 | 4_1:+68474263 | Msa0567160:three_prime_UTR |
| GAGAATTGAGAAATTGGAGG+AGG | 0.507588 | 4_1:+68471456 | Msa0567160:CDS |
| TTACTCAACGAGTCAATTCA+AGG | 0.519358 | 4_1:+68474237 | Msa0567160:three_prime_UTR |
| CTCCAAAATGTCTGATTGCA+GGG | 0.525218 | 4_1:-68473406 | None:intergenic |
| ACTTTCATTTCAGGATTACA+AGG | 0.527608 | 4_1:+68474338 | Msa0567160:three_prime_UTR |
| CTAGGCAGCTTGAGAAATTG+GGG | 0.538326 | 4_1:+68471515 | Msa0567160:CDS |
| CGGTGGGGTTTCTGTTTCGG+AGG | 0.539820 | 4_1:+68471420 | Msa0567160:CDS |
| AAGTTTCCCGTGGATACAGA+TGG | 0.540326 | 4_1:+68474207 | Msa0567160:three_prime_UTR |
| GAGAGACGGTGTTGAACGGT+GGG | 0.546933 | 4_1:+68471404 | Msa0567160:CDS |
| GATTAGTAACTGAGCTATTG+GGG | 0.561521 | 4_1:+68474473 | Msa0567160:three_prime_UTR |
| GAGAAGGAAATGGAGAGAGA+CGG | 0.562581 | 4_1:+68471390 | None:intergenic |
| GGAAAACCATCAAATTACAG+AGG | 0.566530 | 4_1:+68474055 | Msa0567160:three_prime_UTR |
| AGTTTCCCGTGGATACAGAT+GGG | 0.579307 | 4_1:+68474208 | Msa0567160:three_prime_UTR |
| GAAAACCATCAAATTACAGA+GGG | 0.582046 | 4_1:+68474056 | Msa0567160:three_prime_UTR |
| AATGATTACACATTTACTAA+GGG | 0.583298 | 4_1:+68474178 | Msa0567160:three_prime_UTR |
| TGGAGAGAGACGGTGTTGAA+CGG | 0.589136 | 4_1:+68471400 | Msa0567160:CDS |
| TGCGAAGGCAGGTAAGCTAT+GGG | 0.592521 | 4_1:+68473917 | Msa0567160:CDS |
| GTCTGAACTCTCTGGTTCTG+TGG | 0.592692 | 4_1:+68474271 | Msa0567160:three_prime_UTR |
| TCAACGAGTCAATTCAAGGA+GGG | 0.615226 | 4_1:+68474241 | Msa0567160:three_prime_UTR |
| CTGTATCCACGGGAAACTTG+AGG | 0.615624 | 4_1:-68474203 | None:intergenic |
| CAACGAGTCAATTCAAGGAG+GGG | 0.615962 | 4_1:+68474242 | Msa0567160:three_prime_UTR |
| TTGCAGGGCTAATGCTCTTG+CGG | 0.622054 | 4_1:-68473391 | None:intergenic |
| GGATTTGAAGAGTAATGCGA+CGG | 0.629644 | 4_1:+68471477 | Msa0567160:CDS |
| TCTCATTCTTGCAATTGCGA+AGG | 0.648334 | 4_1:+68473902 | Msa0567160:CDS |
| AGAGAGACGGTGTTGAACGG+TGG | 0.648405 | 4_1:+68471403 | Msa0567160:CDS |
| AGGGAGCCTCAAGTTTCCCG+TGG | 0.653464 | 4_1:+68474197 | Msa0567160:three_prime_UTR |
| CCTGAAACTAGTGAAGAACA+CGG | 0.674207 | 4_1:+68473948 | Msa0567160:CDS |
| GTTTCCCGTGGATACAGATG+GGG | 0.675443 | 4_1:+68474209 | Msa0567160:three_prime_UTR |
| TCTCAATGCGGTAAATCAGG+AGG | 0.687985 | 4_1:+68474001 | Msa0567160:CDS |
| AGAGACGGTGTTGAACGGTG+GGG | 0.693868 | 4_1:+68471405 | Msa0567160:CDS |
| CTCAACGAGTCAATTCAAGG+AGG | 0.701887 | 4_1:+68474240 | Msa0567160:three_prime_UTR |
| CAGATGAATATGCATTGGTG+TGG | 0.711307 | 4_1:+68474418 | Msa0567160:three_prime_UTR |
| TCTGGCACAGAAGAATTCCG+AGG | 0.724089 | 4_1:+68473368 | Msa0567160:CDS |
| CTCAGCTGCGAATCTCAATG+CGG | 0.734213 | 4_1:+68473989 | Msa0567160:CDS |
| AGATAGGATTGAATTCATGG+TGG | 0.761795 | 4_1:+68474514 | Msa0567160:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTTTTTTTTTTTTG+AGG | + | chr4_1:68472052-68472071 | Msa0567160:intron | 10.0% |
| !!! | TTTTCTTTTTTTTTTTTTGA+GGG | + | chr4_1:68472053-68472072 | Msa0567160:intron | 10.0% |
| !! | ACATTTCATAATAAACTTTA+TGG | - | chr4_1:68471661-68471680 | None:intergenic | 15.0% |
| !! | TATTCTATCTAATATTCAAT+AGG | - | chr4_1:68471902-68471921 | None:intergenic | 15.0% |
| !! | TATTGAATATTAGATAGAAT+AGG | + | chr4_1:68471901-68471920 | Msa0567160:intron | 15.0% |
| !! | TATAAGCAATAATATCATAA+TGG | + | chr4_1:68472161-68472180 | Msa0567160:intron | 15.0% |
| !!! | TTTAGTATAGTTTTTACCAA+TGG | + | chr4_1:68471870-68471889 | Msa0567160:intron | 20.0% |
| !!! | ATTTTGTTATTTGAACAAGT+CGG | - | chr4_1:68471972-68471991 | None:intergenic | 20.0% |
| !!! | AGTTTGTTATTGAACTTTAA+AGG | + | chr4_1:68473540-68473559 | Msa0567160:intron | 20.0% |
| !!! | TTAAAGGTAACATTATTTTG+TGG | + | chr4_1:68473556-68473575 | Msa0567160:intron | 20.0% |
| !! | TAATGATTACACATTTACTA+AGG | + | chr4_1:68474177-68474196 | Msa0567160:three_prime_UTR | 20.0% |
| !! | AATGATTACACATTTACTAA+GGG | + | chr4_1:68474178-68474197 | Msa0567160:three_prime_UTR | 20.0% |
| ! | ATTATAAAGACGAAAACTGT+TGG | - | chr4_1:68471727-68471746 | None:intergenic | 25.0% |
| ! | TCAAATATTCTAGCAATGTT+AGG | + | chr4_1:68472185-68472204 | Msa0567160:intron | 25.0% |
| ! | TTCCTAAAAACATAAGCTTA+TGG | + | chr4_1:68472384-68472403 | Msa0567160:intron | 25.0% |
| !! | ATCCATAAGCTTATGTTTTT+AGG | - | chr4_1:68472389-68472408 | None:intergenic | 25.0% |
| !!! | TTACTAGTGTTTTTAGCTTA+AGG | - | chr4_1:68472655-68472674 | None:intergenic | 25.0% |
| !!! | TATCTTTGAAACAAAGTATG+AGG | + | chr4_1:68472920-68472939 | Msa0567160:intron | 25.0% |
| ! | AGAGTTTAAGTAACATTGAA+GGG | - | chr4_1:68473482-68473501 | None:intergenic | 25.0% |
| ! | TTTATGTGCCAATAAAATTC+TGG | - | chr4_1:68474157-68474176 | None:intergenic | 25.0% |
| ! | TGTTCATTTACTTTCATTTC+AGG | + | chr4_1:68474329-68474348 | Msa0567160:three_prime_UTR | 25.0% |
| !! | TTTTTGTTACAGCAAAACTA+AGG | - | chr4_1:68474398-68474417 | None:intergenic | 25.0% |
| ! | AAAAACAGATGAATATGCAT+TGG | + | chr4_1:68474413-68474432 | Msa0567160:three_prime_UTR | 25.0% |
| !!! | AAGTTTGTTTTGTATGAGAT+AGG | + | chr4_1:68474498-68474517 | Msa0567160:three_prime_UTR | 25.0% |
| TTTGCAGAGAATTGAGAAAT+TGG | + | chr4_1:68471450-68471469 | Msa0567160:CDS | 30.0% | |
| GTAGTAATTACCTCAGTTAT+AGG | - | chr4_1:68471577-68471596 | None:intergenic | 30.0% | |
| ACTGTTGGAATATATTCAAG+AGG | - | chr4_1:68471712-68471731 | None:intergenic | 30.0% | |
| ! | ATTCAATAGGTCTTTTCCAT+TGG | - | chr4_1:68471889-68471908 | None:intergenic | 30.0% |
| ATATGTGCTGAGAGTTTATT+GGG | + | chr4_1:68472022-68472041 | Msa0567160:intron | 30.0% | |
| ! | TTAGGTTGCTGACAAAATTA+AGG | + | chr4_1:68472203-68472222 | Msa0567160:intron | 30.0% |
| TTAAGGTTCATAACCAATCT+TGG | + | chr4_1:68472220-68472239 | Msa0567160:intron | 30.0% | |
| ! | CCAGATTGAGTCAATTTTTA+GGG | - | chr4_1:68473035-68473054 | None:intergenic | 30.0% |
| ! | ACCAGATTGAGTCAATTTTT+AGG | - | chr4_1:68473036-68473055 | None:intergenic | 30.0% |
| TTCCAGTAATATGAATTCCT+CGG | - | chr4_1:68473115-68473134 | None:intergenic | 30.0% | |
| !! | TCATTAACATTTTGAGTGTC+TGG | + | chr4_1:68473250-68473269 | Msa0567160:intron | 30.0% |
| CAGAGTTTAAGTAACATTGA+AGG | - | chr4_1:68473483-68473502 | None:intergenic | 30.0% | |
| AAACTGGAATACTAGATTCA+TGG | - | chr4_1:68473739-68473758 | None:intergenic | 30.0% | |
| TTTAACCCAAGCTTCAAATT+TGG | - | chr4_1:68474031-68474050 | None:intergenic | 30.0% | |
| GAAAACCATCAAATTACAGA+GGG | + | chr4_1:68474056-68474075 | Msa0567160:three_prime_UTR | 30.0% | |
| ! | CAAAGTAGCCAGAATTTTAT+TGG | + | chr4_1:68474146-68474165 | Msa0567160:three_prime_UTR | 30.0% |
| ACTTTCATTTCAGGATTACA+AGG | + | chr4_1:68474338-68474357 | Msa0567160:three_prime_UTR | 30.0% | |
| TAGATTAGTAACTGAGCTAT+TGG | + | chr4_1:68474471-68474490 | Msa0567160:three_prime_UTR | 30.0% | |
| AGATTAGTAACTGAGCTATT+GGG | + | chr4_1:68474472-68474491 | Msa0567160:three_prime_UTR | 30.0% | |
| ATGAGATAGGATTGAATTCA+TGG | + | chr4_1:68474511-68474530 | Msa0567160:three_prime_UTR | 30.0% | |
| TTTGAAGGAACCTATAACTG+AGG | + | chr4_1:68471564-68471583 | Msa0567160:intron | 35.0% | |
| GATATGTGCTGAGAGTTTAT+TGG | + | chr4_1:68472021-68472040 | Msa0567160:intron | 35.0% | |
| !!! | TTTTTTGAGGGAGAGTTTGT+TGG | + | chr4_1:68472065-68472084 | Msa0567160:intron | 35.0% |
| !! | TTTTTGAGGGAGAGTTTGTT+GGG | + | chr4_1:68472066-68472085 | Msa0567160:intron | 35.0% |
| GGTTGCAATCTAGGTTATTT+AGG | - | chr4_1:68472279-68472298 | None:intergenic | 35.0% | |
| ATTGCAACCAGAAGTAGTTA+GGG | + | chr4_1:68472290-68472309 | Msa0567160:intron | 35.0% | |
| TGTATTCATGTGTTCGTCAT+TGG | + | chr4_1:68472342-68472361 | Msa0567160:intron | 35.0% | |
| ATCGAAGATTGATTGAAAGC+CGG | - | chr4_1:68472492-68472511 | None:intergenic | 35.0% | |
| ACTAACCTCAAACTGCTATA+GGG | + | chr4_1:68472527-68472546 | Msa0567160:intron | 35.0% | |
| AATAGAGTCTGGCACTTTAT+TGG | + | chr4_1:68472550-68472569 | Msa0567160:intron | 35.0% | |
| GGAAGAAAAAAACAGGAATG+TGG | + | chr4_1:68472724-68472743 | Msa0567160:intron | 35.0% | |
| ! | TTGCAAGAAAATGCAGGTTT+TGG | + | chr4_1:68472872-68472891 | Msa0567160:intron | 35.0% |
| !!! | AAGAAAATGCAGGTTTTGGA+TGG | + | chr4_1:68472876-68472895 | Msa0567160:intron | 35.0% |
| !! | GTTTTGGATGGAAATGACAT+TGG | + | chr4_1:68472888-68472907 | Msa0567160:intron | 35.0% |
| CAAAGTATGAGGTTTCAAGA+AGG | + | chr4_1:68472931-68472950 | Msa0567160:intron | 35.0% | |
| AGGTCAGAAAACAATGAAAC+TGG | + | chr4_1:68472955-68472974 | Msa0567160:intron | 35.0% | |
| GGTCAGAAAACAATGAAACT+GGG | + | chr4_1:68472956-68472975 | Msa0567160:intron | 35.0% | |
| GTCAGAAAACAATGAAACTG+GGG | + | chr4_1:68472957-68472976 | Msa0567160:intron | 35.0% | |
| ! | CCCTAAAAATTGACTCAATC+TGG | + | chr4_1:68473032-68473051 | Msa0567160:intron | 35.0% |
| AAATCTCTAGTCTGACGTAT+GGG | - | chr4_1:68473765-68473784 | None:intergenic | 35.0% | |
| AAAATCTCTAGTCTGACGTA+TGG | - | chr4_1:68473766-68473785 | None:intergenic | 35.0% | |
| ! | TCGAGTTTGACTTATCTTGA+TGG | + | chr4_1:68473837-68473856 | Msa0567160:intron | 35.0% |
| TTGAAGCTTGGGTTAAACTA+AGG | + | chr4_1:68474034-68474053 | Msa0567160:exon | 35.0% | |
| GGAAAACCATCAAATTACAG+AGG | + | chr4_1:68474055-68474074 | Msa0567160:three_prime_UTR | 35.0% | |
| TTCATCCCTCTGTAATTTGA+TGG | - | chr4_1:68474064-68474083 | None:intergenic | 35.0% | |
| ! | ACTTTGACTTTGTGTGTAGA+TGG | - | chr4_1:68474132-68474151 | None:intergenic | 35.0% |
| TTACTCAACGAGTCAATTCA+AGG | + | chr4_1:68474237-68474256 | Msa0567160:three_prime_UTR | 35.0% | |
| !! | TCTGGTTCTGTGGTAAATTT+CGG | + | chr4_1:68474281-68474300 | Msa0567160:three_prime_UTR | 35.0% |
| GATTAGTAACTGAGCTATTG+GGG | + | chr4_1:68474473-68474492 | Msa0567160:three_prime_UTR | 35.0% | |
| AGATAGGATTGAATTCATGG+TGG | + | chr4_1:68474514-68474533 | Msa0567160:three_prime_UTR | 35.0% | |
| GCAGAGAATTGAGAAATTGG+AGG | + | chr4_1:68471453-68471472 | Msa0567160:CDS | 40.0% | |
| GAGAATTGAGAAATTGGAGG+AGG | + | chr4_1:68471456-68471475 | Msa0567160:CDS | 40.0% | |
| GGATTTGAAGAGTAATGCGA+CGG | + | chr4_1:68471477-68471496 | Msa0567160:CDS | 40.0% | |
| TCTAGGCAGCTTGAGAAATT+GGG | + | chr4_1:68471514-68471533 | Msa0567160:CDS | 40.0% | |
| AGCTTGAGAAATTGGGGATT+AGG | + | chr4_1:68471521-68471540 | Msa0567160:CDS | 40.0% | |
| ! | ACTACTTCTGGTTGCAATCT+AGG | - | chr4_1:68472288-68472307 | None:intergenic | 40.0% |
| GATTGCAACCAGAAGTAGTT+AGG | + | chr4_1:68472289-68472308 | Msa0567160:intron | 40.0% | |
| TTGCAACCAGAAGTAGTTAG+GGG | + | chr4_1:68472291-68472310 | Msa0567160:intron | 40.0% | |
| CTAATTCCCCTAACTACTTC+TGG | - | chr4_1:68472300-68472319 | None:intergenic | 40.0% | |
| CGAACACATGAATACACACT+TGG | - | chr4_1:68472338-68472357 | None:intergenic | 40.0% | |
| !! | CATATCAGGGGTTAGTTTAG+AGG | - | chr4_1:68472441-68472460 | None:intergenic | 40.0% |
| AACCCCTGATATGAGTAGAT+TGG | + | chr4_1:68472448-68472467 | Msa0567160:intron | 40.0% | |
| CTCCAATCTACTCATATCAG+GGG | - | chr4_1:68472453-68472472 | None:intergenic | 40.0% | |
| GCTCCAATCTACTCATATCA+GGG | - | chr4_1:68472454-68472473 | None:intergenic | 40.0% | |
| AGCTCCAATCTACTCATATC+AGG | - | chr4_1:68472455-68472474 | None:intergenic | 40.0% | |
| TCGAAGATTGATTGAAAGCC+GGG | - | chr4_1:68472491-68472510 | None:intergenic | 40.0% | |
| GACTAACCTCAAACTGCTAT+AGG | + | chr4_1:68472526-68472545 | Msa0567160:intron | 40.0% | |
| CTATTCCCTATAGCAGTTTG+AGG | - | chr4_1:68472535-68472554 | None:intergenic | 40.0% | |
| ACAGAAGACTTAGAACACAG+CGG | + | chr4_1:68472702-68472721 | Msa0567160:intron | 40.0% | |
| GTGGAATCTGAGCAAAAGAT+AGG | + | chr4_1:68472743-68472762 | Msa0567160:intron | 40.0% | |
| ATGAGCTTGCAAGAAAATGC+AGG | + | chr4_1:68472866-68472885 | Msa0567160:intron | 40.0% | |
| GTATGAGGTTTCAAGAAGGA+AGG | + | chr4_1:68472935-68472954 | Msa0567160:intron | 40.0% | |
| ! | AGTGGCTGCTTTCATGAAAT+GGG | - | chr4_1:68472998-68473017 | None:intergenic | 40.0% |
| ! | TAGTGGCTGCTTTCATGAAA+TGG | - | chr4_1:68472999-68473018 | None:intergenic | 40.0% |
| ! | AATTGACTCAATCTGGTTGC+AGG | + | chr4_1:68473039-68473058 | Msa0567160:intron | 40.0% |
| ACAGTACAGGATCTACATCT+CGG | - | chr4_1:68473084-68473103 | None:intergenic | 40.0% | |
| CAGTAATATGAATTCCTCGG+AGG | - | chr4_1:68473112-68473131 | None:intergenic | 40.0% | |
| CTCCGAGGAATTCATATTAC+TGG | + | chr4_1:68473110-68473129 | Msa0567160:intron | 40.0% | |
| !! | CATTTTGAGTGTCTGGTTGA+AGG | + | chr4_1:68473257-68473276 | Msa0567160:intron | 40.0% |
| CTCCAAAATGTCTGATTGCA+GGG | - | chr4_1:68473409-68473428 | None:intergenic | 40.0% | |
| TCTCCAAAATGTCTGATTGC+AGG | - | chr4_1:68473410-68473429 | None:intergenic | 40.0% | |
| !! | GCAATCAGACATTTTGGAGA+AGG | + | chr4_1:68473410-68473429 | Msa0567160:CDS | 40.0% |
| ! | AAAGGTTTTGCTAGCAATGC+AGG | + | chr4_1:68473449-68473468 | Msa0567160:CDS | 40.0% |
| !! | AACACTTTAGCTCTCATCTG+CGG | + | chr4_1:68473596-68473615 | Msa0567160:intron | 40.0% |
| CACATCATTGTGTTGTGTGT+GGG | - | chr4_1:68473679-68473698 | None:intergenic | 40.0% | |
| TCACATCATTGTGTTGTGTG+TGG | - | chr4_1:68473680-68473699 | None:intergenic | 40.0% | |
| GGAATACTAGATTCATGGTC+TGG | - | chr4_1:68473734-68473753 | None:intergenic | 40.0% | |
| TCTGACGTATGGGTTTAAAC+TGG | - | chr4_1:68473755-68473774 | None:intergenic | 40.0% | |
| TGGTGTTTGATCGTTCATGT+AGG | + | chr4_1:68473857-68473876 | Msa0567160:intron | 40.0% | |
| TCTCATTCTTGCAATTGCGA+AGG | + | chr4_1:68473902-68473921 | Msa0567160:CDS | 40.0% | |
| CCTGAAACTAGTGAAGAACA+CGG | + | chr4_1:68473948-68473967 | Msa0567160:CDS | 40.0% | |
| GAATCTCAATGCGGTAAATC+AGG | + | chr4_1:68473998-68474017 | Msa0567160:CDS | 40.0% | |
| ! | GTCCACCAAATTTGAAGCTT+GGG | + | chr4_1:68474023-68474042 | Msa0567160:exon | 40.0% |
| AACCCAAGCTTCAAATTTGG+TGG | - | chr4_1:68474028-68474047 | None:intergenic | 40.0% | |
| ! | TTTTTCCCCATCTGTATCCA+CGG | - | chr4_1:68474217-68474236 | None:intergenic | 40.0% |
| TCAACGAGTCAATTCAAGGA+GGG | + | chr4_1:68474241-68474260 | Msa0567160:three_prime_UTR | 40.0% | |
| !! | CTGGTTCTGTGGTAAATTTC+GGG | + | chr4_1:68474282-68474301 | Msa0567160:three_prime_UTR | 40.0% |
| ! | CAGATGAATATGCATTGGTG+TGG | + | chr4_1:68474418-68474437 | Msa0567160:three_prime_UTR | 40.0% |
| TAGGATTGAATTCATGGTGG+TGG | + | chr4_1:68474517-68474536 | Msa0567160:three_prime_UTR | 40.0% | |
| AGAGTAATGCGACGGTTGTT+AGG | + | chr4_1:68471485-68471504 | Msa0567160:CDS | 45.0% | |
| GAGTAATGCGACGGTTGTTA+GGG | + | chr4_1:68471486-68471505 | Msa0567160:CDS | 45.0% | |
| !! | CGGTTGTTAGGGTTTTGTCT+AGG | + | chr4_1:68471497-68471516 | Msa0567160:CDS | 45.0% |
| GTCTAGGCAGCTTGAGAAAT+TGG | + | chr4_1:68471513-68471532 | Msa0567160:CDS | 45.0% | |
| CTAGGCAGCTTGAGAAATTG+GGG | + | chr4_1:68471515-68471534 | Msa0567160:CDS | 45.0% | |
| GGATTAGGTTTCGTGTTACC+AGG | + | chr4_1:68471536-68471555 | Msa0567160:intron | 45.0% | |
| TAGGTTTCGTGTTACCAGGA+AGG | + | chr4_1:68471540-68471559 | Msa0567160:intron | 45.0% | |
| AGGTTTCGTGTTACCAGGAA+GGG | + | chr4_1:68471541-68471560 | Msa0567160:intron | 45.0% | |
| TGTTACCAGGAAGGGTTTGA+AGG | + | chr4_1:68471549-68471568 | Msa0567160:intron | 45.0% | |
| GAGCTTGAAATGCTAATGCC+CGG | + | chr4_1:68472470-68472489 | Msa0567160:intron | 45.0% | |
| CTGCTATAGGGAATAGAGTC+TGG | + | chr4_1:68472539-68472558 | Msa0567160:intron | 45.0% | |
| CAGAAGACTTAGAACACAGC+GGG | + | chr4_1:68472703-68472722 | Msa0567160:intron | 45.0% | |
| CACAGCGGGAAGAAAAAAAC+AGG | + | chr4_1:68472717-68472736 | Msa0567160:intron | 45.0% | |
| ! | TGGCTGCTTTCATGAAATGG+GGG | - | chr4_1:68472996-68473015 | None:intergenic | 45.0% |
| ! | GTGGCTGCTTTCATGAAATG+GGG | - | chr4_1:68472997-68473016 | None:intergenic | 45.0% |
| AGGGAGATTCACAGTTGTAG+TGG | - | chr4_1:68473016-68473035 | None:intergenic | 45.0% | |
| TTGAATGAAGACTGCAGCTC+TGG | + | chr4_1:68473350-68473369 | Msa0567160:intron | 45.0% | |
| ! | AGCCCTGCAATCAGACATTT+TGG | + | chr4_1:68473404-68473423 | Msa0567160:CDS | 45.0% |
| !! | AGACATTTTGGAGAAGGAGC+TGG | + | chr4_1:68473416-68473435 | Msa0567160:CDS | 45.0% |
| !! | GACATTTTGGAGAAGGAGCT+GGG | + | chr4_1:68473417-68473436 | Msa0567160:CDS | 45.0% |
| !! | ACATTTTGGAGAAGGAGCTG+GGG | + | chr4_1:68473418-68473437 | Msa0567160:CDS | 45.0% |
| ATTGTGTTGTGTGTGGGTGT+GGG | - | chr4_1:68473673-68473692 | None:intergenic | 45.0% | |
| ATTCTTGCAATTGCGAAGGC+AGG | + | chr4_1:68473906-68473925 | Msa0567160:CDS | 45.0% | |
| ! | CCGTGTTCTTCACTAGTTTC+AGG | - | chr4_1:68473951-68473970 | None:intergenic | 45.0% |
| TCTCAATGCGGTAAATCAGG+AGG | + | chr4_1:68474001-68474020 | Msa0567160:CDS | 45.0% | |
| ! | GGTCCACCAAATTTGAAGCT+TGG | + | chr4_1:68474022-68474041 | Msa0567160:exon | 45.0% |
| AAGTTTCCCGTGGATACAGA+TGG | + | chr4_1:68474207-68474226 | Msa0567160:three_prime_UTR | 45.0% | |
| AGTTTCCCGTGGATACAGAT+GGG | + | chr4_1:68474208-68474227 | Msa0567160:three_prime_UTR | 45.0% | |
| ! | TTTTCCCCATCTGTATCCAC+GGG | - | chr4_1:68474216-68474235 | None:intergenic | 45.0% |
| CTCAACGAGTCAATTCAAGG+AGG | + | chr4_1:68474240-68474259 | Msa0567160:three_prime_UTR | 45.0% | |
| CAACGAGTCAATTCAAGGAG+GGG | + | chr4_1:68474242-68474261 | Msa0567160:three_prime_UTR | 45.0% | |
| GGAGAATTGTCTGAACTCTC+TGG | + | chr4_1:68474263-68474282 | Msa0567160:three_prime_UTR | 45.0% | |
| ! | TGGAGAGAGACGGTGTTGAA+CGG | + | chr4_1:68471400-68471419 | Msa0567160:CDS | 50.0% |
| GAACGGTGGGGTTTCTGTTT+CGG | + | chr4_1:68471417-68471436 | Msa0567160:CDS | 50.0% | |
| AGGTTCCTTCAAACCCTTCC+TGG | - | chr4_1:68471557-68471576 | None:intergenic | 50.0% | |
| ACCAATCTTGGCAGCTCTAC+AGG | + | chr4_1:68472232-68472251 | Msa0567160:intron | 50.0% | |
| TCCTGTAGAGCTGCCAAGAT+TGG | - | chr4_1:68472236-68472255 | None:intergenic | 50.0% | |
| TCTGGCACAGAAGAATTCCG+AGG | + | chr4_1:68473368-68473387 | Msa0567160:CDS | 50.0% | |
| TTGCAGGGCTAATGCTCTTG+CGG | - | chr4_1:68473394-68473413 | None:intergenic | 50.0% | |
| !! | CATTTTGGAGAAGGAGCTGG+GGG | + | chr4_1:68473419-68473438 | Msa0567160:CDS | 50.0% |
| CATTGTGTTGTGTGTGGGTG+TGG | - | chr4_1:68473674-68473693 | None:intergenic | 50.0% | |
| TTGCGAAGGCAGGTAAGCTA+TGG | + | chr4_1:68473916-68473935 | Msa0567160:CDS | 50.0% | |
| TGCGAAGGCAGGTAAGCTAT+GGG | + | chr4_1:68473917-68473936 | Msa0567160:CDS | 50.0% | |
| CTCAGCTGCGAATCTCAATG+CGG | + | chr4_1:68473989-68474008 | Msa0567160:CDS | 50.0% | |
| CTGTATCCACGGGAAACTTG+AGG | - | chr4_1:68474206-68474225 | None:intergenic | 50.0% | |
| GTTTCCCGTGGATACAGATG+GGG | + | chr4_1:68474209-68474228 | Msa0567160:three_prime_UTR | 50.0% | |
| !! | GTCTGAACTCTCTGGTTCTG+TGG | + | chr4_1:68474271-68474290 | Msa0567160:three_prime_UTR | 50.0% |
| ! | AGAGAGACGGTGTTGAACGG+TGG | + | chr4_1:68471403-68471422 | Msa0567160:CDS | 55.0% |
| ! | GAGAGACGGTGTTGAACGGT+GGG | + | chr4_1:68471404-68471423 | Msa0567160:CDS | 55.0% |
| ! | AGAGACGGTGTTGAACGGTG+GGG | + | chr4_1:68471405-68471424 | Msa0567160:CDS | 55.0% |
| TGGGGTTTCTGTTTCGGAGG+TGG | + | chr4_1:68471423-68471442 | Msa0567160:CDS | 55.0% | |
| CTCGGAGGACACTACAGTAC+AGG | - | chr4_1:68473097-68473116 | None:intergenic | 55.0% | |
| CTGTACTGTAGTGTCCTCCG+AGG | + | chr4_1:68473095-68473114 | Msa0567160:intron | 55.0% | |
| GGAGCTGGGGGAAGTTCAAA+AGG | + | chr4_1:68473431-68473450 | Msa0567160:CDS | 55.0% | |
| CGGTGGGGTTTCTGTTTCGG+AGG | + | chr4_1:68471420-68471439 | Msa0567160:CDS | 60.0% | |
| GGCTAATGCTCTTGCGGCCT+CGG | - | chr4_1:68473388-68473407 | None:intergenic | 60.0% | |
| AGGGAGCCTCAAGTTTCCCG+TGG | + | chr4_1:68474197-68474216 | Msa0567160:three_prime_UTR | 60.0% | |
| GGGTGTGGGTGTGCGTAGGT+GGG | - | chr4_1:68473659-68473678 | None:intergenic | 65.0% | |
| TGGGTGTGGGTGTGCGTAGG+TGG | - | chr4_1:68473660-68473679 | None:intergenic | 65.0% | |
| GTGTGGGTGTGGGTGTGCGT+AGG | - | chr4_1:68473663-68473682 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 68471391 | 68474552 | 68471391 | ID=Msa0567160;Name=Msa0567160 |
| chr4_1 | mRNA | 68471391 | 68474552 | 68471391 | ID=Msa0567160-mRNA-1;Parent=Msa0567160;Name=Msa0567160-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0.66|1|0.5|0.66|3|515|142 |
| chr4_1 | exon | 68471391 | 68471549 | 68471391 | ID=Msa0567160-mRNA-1:exon:22576;Parent=Msa0567160-mRNA-1 |
| chr4_1 | exon | 68473360 | 68473470 | 68473360 | ID=Msa0567160-mRNA-1:exon:22577;Parent=Msa0567160-mRNA-1 |
| chr4_1 | exon | 68473879 | 68474552 | 68473879 | ID=Msa0567160-mRNA-1:exon:22578;Parent=Msa0567160-mRNA-1 |
| chr4_1 | CDS | 68471391 | 68471549 | 68471391 | ID=Msa0567160-mRNA-1:cds;Parent=Msa0567160-mRNA-1 |
| chr4_1 | CDS | 68473360 | 68473470 | 68473360 | ID=Msa0567160-mRNA-1:cds;Parent=Msa0567160-mRNA-1 |
| chr4_1 | CDS | 68473879 | 68474037 | 68473879 | ID=Msa0567160-mRNA-1:cds;Parent=Msa0567160-mRNA-1 |
| chr4_1 | three_prime_UTR | 68474038 | 68474552 | 68474038 | ID=Msa0567160-mRNA-1:three_prime_utr;Parent=Msa0567160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
