Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948260 | A0A072U8R2 | 93.377 | 151 | 10 | 0 | 18 | 168 | 18 | 168 | 4.32e-99 | 292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0948260 | 0.812907 | 3.347072e-51 | -8.615850e-47 |
| Msa0003470 | Msa0948260 | 0.842487 | 2.509414e-58 | -8.615850e-47 |
| Msa0012460 | Msa0948260 | 0.803305 | 3.714394e-49 | -8.615850e-47 |
| Msa0017120 | Msa0948260 | 0.820594 | 6.315448e-53 | -8.615850e-47 |
| Msa0017940 | Msa0948260 | 0.825175 | 5.409603e-54 | -8.615850e-47 |
| Msa0024680 | Msa0948260 | 0.815332 | 9.760889e-52 | -8.615850e-47 |
| Msa0027540 | Msa0948260 | 0.806974 | 6.338422e-50 | -8.615850e-47 |
| Msa0030310 | Msa0948260 | 0.803323 | 3.682567e-49 | -8.615850e-47 |
| Msa0032400 | Msa0948260 | 0.801679 | 8.035137e-49 | -8.615850e-47 |
| Msa0043680 | Msa0948260 | 0.819257 | 1.277174e-52 | -8.615850e-47 |
| Msa0044220 | Msa0948260 | 0.826503 | 2.617139e-54 | -8.615850e-47 |
| Msa0048020 | Msa0948260 | 0.805620 | 1.222576e-49 | -8.615850e-47 |
| Msa0065390 | Msa0948260 | 0.815846 | 7.497507e-52 | -8.615850e-47 |
| Msa0084680 | Msa0948260 | 0.819632 | 1.048801e-52 | -8.615850e-47 |
| Msa0092180 | Msa0948260 | 0.809241 | 2.085794e-50 | -8.615850e-47 |
| Msa0092660 | Msa0948260 | 0.814398 | 1.572177e-51 | -8.615850e-47 |
| Msa0092730 | Msa0948260 | 0.808169 | 3.533536e-50 | -8.615850e-47 |
| Msa0110710 | Msa0948260 | 0.814247 | 1.698017e-51 | -8.615850e-47 |
| Msa0120330 | Msa0948260 | 0.809374 | 1.952863e-50 | -8.615850e-47 |
| Msa0614230 | Msa0948260 | 0.807095 | 5.976612e-50 | -8.615850e-47 |
| Msa0639370 | Msa0948260 | 0.808226 | 3.437635e-50 | -8.615850e-47 |
| Msa0640880 | Msa0948260 | 0.816341 | 5.813716e-52 | -8.615850e-47 |
| Msa0642650 | Msa0948260 | 0.844475 | 7.388303e-59 | -8.615850e-47 |
| Msa0651350 | Msa0948260 | 0.801755 | 7.750683e-49 | -8.615850e-47 |
| Msa0669220 | Msa0948260 | 0.826380 | 2.800407e-54 | -8.615850e-47 |
| Msa0681890 | Msa0948260 | 0.819018 | 1.447202e-52 | -8.615850e-47 |
| Msa0682400 | Msa0948260 | 0.825143 | 5.503526e-54 | -8.615850e-47 |
| Msa0701320 | Msa0948260 | 0.835358 | 1.757583e-56 | -8.615850e-47 |
| Msa0703720 | Msa0948260 | 0.827104 | 1.881001e-54 | -8.615850e-47 |
| Msa0703760 | Msa0948260 | 0.833795 | 4.343570e-56 | -8.615850e-47 |
| Msa0707780 | Msa0948260 | 0.818789 | 1.632159e-52 | -8.615850e-47 |
| Msa0709480 | Msa0948260 | 0.805777 | 1.133396e-49 | -8.615850e-47 |
| Msa0717090 | Msa0948260 | 0.839420 | 1.601398e-57 | -8.615850e-47 |
| Msa0730180 | Msa0948260 | 0.802253 | 6.125787e-49 | -8.615850e-47 |
| Msa0803130 | Msa0948260 | 0.837018 | 6.656082e-57 | -8.615850e-47 |
| Msa0804110 | Msa0948260 | 0.808008 | 3.823679e-50 | -8.615850e-47 |
| Msa0841490 | Msa0948260 | 0.833695 | 4.599390e-56 | -8.615850e-47 |
| Msa0122210 | Msa0948260 | 0.825539 | 4.436479e-54 | -8.615850e-47 |
| Msa0135980 | Msa0948260 | 0.802459 | 5.554205e-49 | -8.615850e-47 |
| Msa0137600 | Msa0948260 | 0.806775 | 6.981498e-50 | -8.615850e-47 |
| Msa0139900 | Msa0948260 | 0.811124 | 8.189028e-51 | -8.615850e-47 |
| Msa0141430 | Msa0948260 | 0.802679 | 5.002935e-49 | -8.615850e-47 |
| Msa0141830 | Msa0948260 | 0.845282 | 4.475051e-59 | -8.615850e-47 |
| Msa0146470 | Msa0948260 | 0.841134 | 5.711102e-58 | -8.615850e-47 |
| Msa0157020 | Msa0948260 | 0.832955 | 7.034531e-56 | -8.615850e-47 |
| Msa0177280 | Msa0948260 | 0.811608 | 6.428939e-51 | -8.615850e-47 |
| Msa0185390 | Msa0948260 | 0.804469 | 2.128077e-49 | -8.615850e-47 |
| Msa0194570 | Msa0948260 | 0.802822 | 4.674076e-49 | -8.615850e-47 |
| Msa0223280 | Msa0948260 | 0.846017 | 2.828126e-59 | -8.615850e-47 |
| Msa0225010 | Msa0948260 | 0.817862 | 2.646394e-52 | -8.615850e-47 |
| Msa0227490 | Msa0948260 | 0.812861 | 3.426658e-51 | -8.615850e-47 |
| Msa0230400 | Msa0948260 | 0.811068 | 8.421528e-51 | -8.615850e-47 |
| Msa0382500 | Msa0948260 | 0.809752 | 1.619601e-50 | -8.615850e-47 |
| Msa0417630 | Msa0948260 | 0.852103 | 5.749657e-61 | -8.615850e-47 |
| Msa0429270 | Msa0948260 | 0.805524 | 1.280586e-49 | -8.615850e-47 |
| Msa0432680 | Msa0948260 | 0.808631 | 2.817142e-50 | -8.615850e-47 |
| Msa0469910 | Msa0948260 | -0.821314 | 4.311504e-53 | -8.615850e-47 |
| Msa0239660 | Msa0948260 | 0.807268 | 5.492281e-50 | -8.615850e-47 |
| Msa0246690 | Msa0948260 | 0.814339 | 1.620089e-51 | -8.615850e-47 |
| Msa0247310 | Msa0948260 | 0.801082 | 1.064990e-48 | -8.615850e-47 |
| Msa0257130 | Msa0948260 | 0.817057 | 4.017647e-52 | -8.615850e-47 |
| Msa0259980 | Msa0948260 | 0.843190 | 1.631914e-58 | -8.615850e-47 |
| Msa0274780 | Msa0948260 | 0.816766 | 4.668488e-52 | -8.615850e-47 |
| Msa0284780 | Msa0948260 | 0.803173 | 3.955498e-49 | -8.615850e-47 |
| Msa0297920 | Msa0948260 | 0.801588 | 8.387583e-49 | -8.615850e-47 |
| Msa0298970 | Msa0948260 | 0.801740 | 7.806389e-49 | -8.615850e-47 |
| Msa0314790 | Msa0948260 | 0.836609 | 8.462641e-57 | -8.615850e-47 |
| Msa0317260 | Msa0948260 | 0.800348 | 1.503396e-48 | -8.615850e-47 |
| Msa0323990 | Msa0948260 | 0.804230 | 2.386640e-49 | -8.615850e-47 |
| Msa0339860 | Msa0948260 | 0.837598 | 4.729307e-57 | -8.615850e-47 |
| Msa0344070 | Msa0948260 | 0.809252 | 2.074344e-50 | -8.615850e-47 |
| Msa0485280 | Msa0948260 | 0.812008 | 5.262259e-51 | -8.615850e-47 |
| Msa0511870 | Msa0948260 | 0.806357 | 8.553946e-50 | -8.615850e-47 |
| Msa0524090 | Msa0948260 | 0.808997 | 2.351694e-50 | -8.615850e-47 |
| Msa0524120 | Msa0948260 | 0.815243 | 1.021382e-51 | -8.615850e-47 |
| Msa0526700 | Msa0948260 | 0.808089 | 3.676113e-50 | -8.615850e-47 |
| Msa0532840 | Msa0948260 | 0.807251 | 5.538524e-50 | -8.615850e-47 |
| Msa0538570 | Msa0948260 | 0.816828 | 4.521806e-52 | -8.615850e-47 |
| Msa0546380 | Msa0948260 | 0.828700 | 7.769059e-55 | -8.615850e-47 |
| Msa0546740 | Msa0948260 | 0.814043 | 1.883010e-51 | -8.615850e-47 |
| Msa0561510 | Msa0948260 | 0.801840 | 7.447026e-49 | -8.615850e-47 |
| Msa0567290 | Msa0948260 | 0.822517 | 2.270631e-53 | -8.615850e-47 |
| Msa0576420 | Msa0948260 | 0.827000 | 1.992368e-54 | -8.615850e-47 |
| Msa0581460 | Msa0948260 | 0.825403 | 4.777529e-54 | -8.615850e-47 |
| Msa0594390 | Msa0948260 | 0.813899 | 2.025855e-51 | -8.615850e-47 |
| Msa0600390 | Msa0948260 | 0.813585 | 2.375583e-51 | -8.615850e-47 |
| Msa0844530 | Msa0948260 | 0.817758 | 2.793329e-52 | -8.615850e-47 |
| Msa0852730 | Msa0948260 | 0.811736 | 6.031779e-51 | -8.615850e-47 |
| Msa0877420 | Msa0948260 | 0.811504 | 6.774846e-51 | -8.615850e-47 |
| Msa0925160 | Msa0948260 | 0.838475 | 2.812616e-57 | -8.615850e-47 |
| Msa0926860 | Msa0948260 | 0.824358 | 8.430004e-54 | -8.615850e-47 |
| Msa0931480 | Msa0948260 | 0.814155 | 1.779438e-51 | -8.615850e-47 |
| Msa0942730 | Msa0948260 | 0.816137 | 6.456362e-52 | -8.615850e-47 |
| Msa0948260 | Msa0955260 | 0.815233 | 1.026793e-51 | -8.615850e-47 |
| Msa0948260 | Msa0958020 | 0.823991 | 1.027895e-53 | -8.615850e-47 |
| Msa0948260 | Msa0972730 | 0.823998 | 1.024050e-53 | -8.615850e-47 |
| Msa0948260 | Msa0990520 | 0.821687 | 3.535796e-53 | -8.615850e-47 |
| Msa0948260 | Msa0992570 | 0.804174 | 2.451352e-49 | -8.615850e-47 |
| Msa0948260 | Msa0992590 | 0.835879 | 1.297720e-56 | -8.615850e-47 |
| Msa0948260 | Msa1002040 | 0.833777 | 4.389463e-56 | -8.615850e-47 |
| Msa0948260 | Msa1004500 | 0.813297 | 2.749199e-51 | -8.615850e-47 |
| Msa0948260 | Msa1009790 | 0.801029 | 1.091586e-48 | -8.615850e-47 |
| Msa0948260 | Msa1022310 | 0.823673 | 1.220228e-53 | -8.615850e-47 |
| Msa0948260 | Msa1027790 | 0.812867 | 3.415913e-51 | -8.615850e-47 |
| Msa0948260 | Msa1028460 | 0.806314 | 8.735448e-50 | -8.615850e-47 |
| Msa0948260 | Msa1037060 | -0.800191 | 1.618373e-48 | -8.615850e-47 |
| Msa0948260 | Msa1044340 | 0.802974 | 4.348422e-49 | -8.615850e-47 |
| Msa0948260 | Msa1045880 | 0.809251 | 2.075453e-50 | -8.615850e-47 |
| Msa0948260 | Msa1045970 | 0.811716 | 6.091908e-51 | -8.615850e-47 |
| Msa0948260 | Msa1046870 | 0.807394 | 5.164806e-50 | -8.615850e-47 |
| Msa0948260 | Msa1061180 | 0.823576 | 1.285717e-53 | -8.615850e-47 |
| Msa0948260 | Msa1072080 | 0.818876 | 1.558973e-52 | -8.615850e-47 |
| Msa0948260 | Msa1097850 | 0.808597 | 2.863851e-50 | -8.615850e-47 |
| Msa0948260 | Msa1106560 | 0.805398 | 1.360893e-49 | -8.615850e-47 |
| Msa0948260 | Msa1112610 | 0.809241 | 2.085606e-50 | -8.615850e-47 |
| Msa0948260 | Msa1125950 | 0.804414 | 2.185688e-49 | -8.615850e-47 |
| Msa0948260 | Msa1159100 | 0.826898 | 2.106336e-54 | -8.615850e-47 |
| Msa0948260 | Msa1159350 | 0.809661 | 1.694992e-50 | -8.615850e-47 |
| Msa0948260 | Msa1164800 | -0.803401 | 3.547316e-49 | -8.615850e-47 |
| Msa0948260 | Msa1166180 | 0.812052 | 5.147039e-51 | -8.615850e-47 |
| Msa0948260 | Msa1166280 | 0.804264 | 2.348729e-49 | -8.615850e-47 |
| Msa0948260 | Msa1171340 | 0.808366 | 3.208491e-50 | -8.615850e-47 |
| Msa0948260 | Msa1175750 | 0.809528 | 1.809805e-50 | -8.615850e-47 |
| Msa0948260 | Msa1183390 | 0.824233 | 9.018433e-54 | -8.615850e-47 |
| Msa0948260 | Msa1210640 | 0.814057 | 1.869814e-51 | -8.615850e-47 |
| Msa0948260 | Msa1219250 | 0.800157 | 1.643936e-48 | -8.615850e-47 |
| Msa0948260 | Msa1220450 | -0.821860 | 3.224920e-53 | -8.615850e-47 |
| Msa0948260 | Msa1220460 | -0.811710 | 6.108536e-51 | -8.615850e-47 |
| Msa0948260 | Msa1220480 | -0.809665 | 1.690841e-50 | -8.615850e-47 |
| Msa0948260 | Msa1223840 | 0.833233 | 5.999066e-56 | -8.615850e-47 |
| Msa0948260 | Msa1224670 | 0.812577 | 3.952395e-51 | -8.615850e-47 |
| Msa0948260 | Msa1235890 | 0.838193 | 3.325362e-57 | -8.615850e-47 |
| Msa0948260 | Msa1259470 | 0.813496 | 2.485038e-51 | -8.615850e-47 |
| Msa0948260 | Msa1263030 | 0.814388 | 1.580739e-51 | -8.615850e-47 |
| Msa0948260 | Msa1271510 | 0.821496 | 3.914420e-53 | -8.615850e-47 |
| Msa0948260 | Msa1271600 | 0.811487 | 6.830231e-51 | -8.615850e-47 |
| Msa0948260 | Msa1284070 | 0.809228 | 2.099229e-50 | -8.615850e-47 |
| Msa0948260 | Msa1299160 | 0.812114 | 4.988328e-51 | -8.615850e-47 |
| Msa0948260 | Msa1307370 | 0.812731 | 3.658821e-51 | -8.615850e-47 |
| Msa0948260 | Msa1309360 | 0.804563 | 2.034719e-49 | -8.615850e-47 |
| Msa0948260 | Msa1315980 | 0.817898 | 2.596426e-52 | -8.615850e-47 |
| Msa0948260 | Msa1323060 | 0.803436 | 3.489959e-49 | -8.615850e-47 |
| Msa0948260 | Msa1325650 | 0.801305 | 9.587564e-49 | -8.615850e-47 |
| Msa0948260 | Msa1325980 | 0.806365 | 8.521611e-50 | -8.615850e-47 |
| Msa0948260 | Msa1352290 | 0.806532 | 7.860281e-50 | -8.615850e-47 |
| Msa0948260 | Msa1354040 | 0.809233 | 2.093977e-50 | -8.615850e-47 |
| Msa0948260 | Msa1365870 | 0.825139 | 5.516391e-54 | -8.615850e-47 |
| Msa0948260 | Msa1367600 | 0.830830 | 2.354073e-55 | -8.615850e-47 |
| Msa0948260 | Msa1367940 | 0.833257 | 5.915311e-56 | -8.615850e-47 |
| Msa0948260 | Msa1376640 | 0.820379 | 7.075173e-53 | -8.615850e-47 |
| Msa0948260 | Msa1381130 | 0.802833 | 4.650300e-49 | -8.615850e-47 |
| Msa0948260 | Msa1382310 | 0.820421 | 6.919143e-53 | -8.615850e-47 |
| Msa0948260 | Msa1405770 | 0.801889 | 7.277673e-49 | -8.615850e-47 |
| Msa0948260 | Msa1407710 | 0.806964 | 6.368430e-50 | -8.615850e-47 |
| Msa0948260 | Msa1414970 | 0.802808 | 4.705639e-49 | -8.615850e-47 |
| Msa0948260 | Msa1449880 | 0.827318 | 1.671877e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948260 | MtrunA17_Chr6g0463111 | 93.377 | 151 | 10 | 0 | 18 | 168 | 18 | 168 | 8.31e-103 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0948260 | AT5G52960.1 | 70.248 | 121 | 32 | 1 | 48 | 168 | 54 | 170 | 3.52e-59 | 182 |
Find 50 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCTTGGTTGAAGAGTT+TGG | 0.257618 | 6_3:-32192873 | Msa0948260:CDS |
| TTCAATTATCGACAAAACTA+TGG | 0.291019 | 6_3:+32189645 | None:intergenic |
| TTGAAACTTAATAAGTTTCA+TGG | 0.292685 | 6_3:-32189627 | Msa0948260:three_prime_UTR |
| GAAGCTTGGTTGAAGAGTTT+GGG | 0.305121 | 6_3:-32192872 | Msa0948260:CDS |
| GCAGAAAACAATGGCGGAAA+TGG | 0.309711 | 6_3:+32193006 | None:intergenic |
| TTCTGAAGCCACTCATCTTC+AGG | 0.322161 | 6_3:+32192944 | None:intergenic |
| GAAAGCAAAATGGCTATCTA+TGG | 0.359266 | 6_3:+32189796 | None:intergenic |
| TTTGAAAGTAGAAAGCAAAA+TGG | 0.365279 | 6_3:+32189786 | None:intergenic |
| TTAATCAGAGTAAGGATGAT+AGG | 0.370877 | 6_3:-32192847 | Msa0948260:CDS |
| AAATGGGTTGTGACAAAGAT+TGG | 0.391323 | 6_3:+32193079 | None:intergenic |
| TTTGGGGTTTAATCAGAGTA+AGG | 0.400405 | 6_3:-32192855 | Msa0948260:CDS |
| ATGTTACTGACCTCTATGTT+AGG | 0.401705 | 6_3:-32192775 | Msa0948260:intron |
| CAAAAGTATAACTGCTGCTA+AGG | 0.404241 | 6_3:+32189588 | None:intergenic |
| TTTGCAAAATCAAATTTGTA+AGG | 0.404503 | 6_3:+32189484 | None:intergenic |
| CAGAAAACAATGGCGGAAAT+GGG | 0.407569 | 6_3:+32193007 | None:intergenic |
| CCACTCATCTTCAGGAACTA+AGG | 0.427512 | 6_3:+32192952 | None:intergenic |
| GGTGGTGTTTGTGAAGGTTA+AGG | 0.433820 | 6_3:+32193138 | None:intergenic |
| TGCTGCTAAGGGAAAACAAA+GGG | 0.439374 | 6_3:+32189600 | None:intergenic |
| TCAAATTTCATTCTATTGAA+AGG | 0.450997 | 6_3:-32189700 | Msa0948260:three_prime_UTR |
| ACAATGGTTTAATTCCTTGT+TGG | 0.453622 | 6_3:-32189759 | Msa0948260:three_prime_UTR |
| TACAAAGGCTTAGTCTTCTC+AGG | 0.455056 | 6_3:+32192917 | None:intergenic |
| GCTTGCCTTGTATTGAAGCT+TGG | 0.464508 | 6_3:-32192886 | Msa0948260:CDS |
| AGAAGCAATGATAAGTATGC+AGG | 0.491152 | 6_3:+32189517 | None:intergenic |
| GACATTGAGAATGCTGTGCT+TGG | 0.498630 | 6_3:-32189823 | Msa0948260:CDS |
| TTCTGAGGGAAATTGAAAGT+GGG | 0.510831 | 6_3:+32193032 | None:intergenic |
| AGGTATTTGAAGAGTGGACC+TGG | 0.511447 | 6_3:-32189898 | Msa0948260:CDS |
| TTTCTGAGGGAAATTGAAAG+TGG | 0.514101 | 6_3:+32193031 | None:intergenic |
| GGGTTGTTAATAAGAGTGAT+TGG | 0.515760 | 6_3:-32192817 | Msa0948260:CDS |
| TGAGGTTGGGAATGTGATGT+TGG | 0.518989 | 6_3:+32193117 | None:intergenic |
| TAATCAGAGTAAGGATGATA+GGG | 0.526131 | 6_3:-32192846 | Msa0948260:CDS |
| CACTCATCTTCAGGAACTAA+GGG | 0.528082 | 6_3:+32192953 | None:intergenic |
| GGTTGGGAATGTGATGTTGG+TGG | 0.536430 | 6_3:+32193120 | None:intergenic |
| TGTGAAGGTTAAGGTTGTGA+TGG | 0.541964 | 6_3:+32193147 | None:intergenic |
| ATTGAGAATGCTGTGCTTGG+AGG | 0.543070 | 6_3:-32189820 | Msa0948260:CDS |
| AAGCTTGGTTGAAGAGTTTG+GGG | 0.545074 | 6_3:-32192871 | Msa0948260:CDS |
| TTCAACCAAGCTTCAATACA+AGG | 0.545936 | 6_3:+32192881 | None:intergenic |
| TGGTGCAGGTATTTGAAGAG+TGG | 0.553975 | 6_3:-32189904 | Msa0948260:intron |
| GAAGGTTAAGGTTGTGATGG+TGG | 0.564985 | 6_3:+32193150 | None:intergenic |
| TCTACTTTCAAAATATACAA+TGG | 0.566672 | 6_3:-32189775 | Msa0948260:three_prime_UTR |
| GATGTTGGTGGTGTTTGTGA+AGG | 0.567175 | 6_3:+32193132 | None:intergenic |
| AAAAGTATAACTGCTGCTAA+GGG | 0.593226 | 6_3:+32189589 | None:intergenic |
| CCTTAGTTCCTGAAGATGAG+TGG | 0.609305 | 6_3:-32192952 | Msa0948260:CDS |
| CGAACCTTTGCAGAAAACAA+TGG | 0.619221 | 6_3:+32192997 | None:intergenic |
| GAAGCAATGATAAGTATGCA+GGG | 0.622908 | 6_3:+32189518 | None:intergenic |
| CTGCTGCTAAGGGAAAACAA+AGG | 0.658338 | 6_3:+32189599 | None:intergenic |
| GGCAAGCTATGTGTATACAA+AGG | 0.667400 | 6_3:+32192902 | None:intergenic |
| GGTATTTGAAGAGTGGACCT+GGG | 0.669089 | 6_3:-32189897 | Msa0948260:CDS |
| ACCTTTGCAGAAAACAATGG+CGG | 0.676011 | 6_3:+32193000 | None:intergenic |
| GCTGCTAAGGGAAAACAAAG+GGG | 0.696311 | 6_3:+32189601 | None:intergenic |
| ATATGAAATAACTTCCAACA+AGG | 0.697035 | 6_3:+32189745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATGATTTTTTTTTTGTTT+GGG | + | chr6_3:32189474-32189493 | None:intergenic | 15.0% |
| !!! | TTGATGATTTTTTTTTTGTT+TGG | + | chr6_3:32189475-32189494 | None:intergenic | 15.0% |
| !!! | TCATTTTCTAAAATTATTAC+CGG | + | chr6_3:32190086-32190105 | None:intergenic | 15.0% |
| !! | TCTTAAATGAGATAAATATT+TGG | + | chr6_3:32192347-32192366 | None:intergenic | 15.0% |
| !! | CTAAAAAAATCATAATACAA+GGG | + | chr6_3:32192374-32192393 | None:intergenic | 15.0% |
| !! | ACTAAAAAAATCATAATACA+AGG | + | chr6_3:32192375-32192394 | None:intergenic | 15.0% |
| !! | ACTTATTTGAACATATTTAA+TGG | + | chr6_3:32192677-32192696 | None:intergenic | 15.0% |
| !!! | AAAACTTAAAAAAGTATGTT+TGG | + | chr6_3:32192704-32192723 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTTGGGTTA+AGG | + | chr6_3:32189468-32189487 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTCCTTCTTTTA+AGG | - | chr6_3:32189918-32189937 | Msa0948260:intron | 20.0% |
| !! | AAAACAAAAACCTTAAAAGA+AGG | + | chr6_3:32189931-32189950 | None:intergenic | 20.0% |
| !! | AAATTCTTTATGCTTCTTTA+AGG | + | chr6_3:32191216-32191235 | None:intergenic | 20.0% |
| !!! | TAAAGAATTTGATTTTTCCA+TGG | - | chr6_3:32191226-32191245 | Msa0948260:intron | 20.0% |
| !! | AAGAAATTATCTAAAAGACT+CGG | + | chr6_3:32192218-32192237 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTATACAAACTGT+TGG | - | chr6_3:32192386-32192405 | Msa0948260:intron | 20.0% |
| !! | TCTACTTTCAAAATATACAA+TGG | - | chr6_3:32192888-32192907 | Msa0948260:CDS | 20.0% |
| !! | TCAAATTTCATTCTATTGAA+AGG | - | chr6_3:32192963-32192982 | Msa0948260:CDS | 20.0% |
| !! | TTGAAACTTAATAAGTTTCA+TGG | - | chr6_3:32193036-32193055 | Msa0948260:CDS | 20.0% |
| !! | TTTGCAAAATCAAATTTGTA+AGG | + | chr6_3:32193182-32193201 | None:intergenic | 20.0% |
| !!! | AGAAATGGATTTTGTGAAAT+GGG | + | chr6_3:32189603-32189622 | None:intergenic | 25.0% |
| !! | AATTGCTCAATTGATTTATG+AGG | - | chr6_3:32190221-32190240 | Msa0948260:intron | 25.0% |
| !! | TTGGATTTTGTTAGTAGAAA+AGG | - | chr6_3:32190287-32190306 | Msa0948260:intron | 25.0% |
| ! | CGATATCAAGAATTTAAATG+CGG | + | chr6_3:32190326-32190345 | None:intergenic | 25.0% |
| !! | AAATTAGTCTCGCAAAAATA+GGG | + | chr6_3:32190508-32190527 | None:intergenic | 25.0% |
| !!! | TTTTGCTTTTGATGTTTATG+TGG | - | chr6_3:32190816-32190835 | Msa0948260:intron | 25.0% |
| !!! | TTTGCTTTTGATGTTTATGT+GGG | - | chr6_3:32190817-32190836 | Msa0948260:intron | 25.0% |
| !!! | TTGAGTTTTGTAAGTAGAAA+AGG | - | chr6_3:32190959-32190978 | Msa0948260:intron | 25.0% |
| !!! | GAATAGATCGCTATTTTTTA+CGG | - | chr6_3:32191094-32191113 | Msa0948260:intron | 25.0% |
| ! | AGGATCTATAAAATGCAATA+AGG | - | chr6_3:32191319-32191338 | Msa0948260:intron | 25.0% |
| ! | CATTGTAATGCCTATATAAA+GGG | + | chr6_3:32191397-32191416 | None:intergenic | 25.0% |
| ! | ACATTGTAATGCCTATATAA+AGG | + | chr6_3:32191398-32191417 | None:intergenic | 25.0% |
| ! | TTACTTCTTGCAAAATAGAT+TGG | - | chr6_3:32191734-32191753 | Msa0948260:intron | 25.0% |
| ! | TACTTCTTGCAAAATAGATT+GGG | - | chr6_3:32191735-32191754 | Msa0948260:intron | 25.0% |
| ! | AACATTCTATAATCCTGATT+AGG | - | chr6_3:32191904-32191923 | Msa0948260:intron | 25.0% |
| ! | GGTCATATCAACTTATATAA+AGG | + | chr6_3:32192241-32192260 | None:intergenic | 25.0% |
| ! | GAAAATACGAAAAAAATGTG+AGG | + | chr6_3:32192274-32192293 | None:intergenic | 25.0% |
| ! | CTTAAGTTTATAAAAGCTGA+TGG | + | chr6_3:32192312-32192331 | None:intergenic | 25.0% |
| ! | TTATGAATATAGTTGAACAC+AGG | - | chr6_3:32192591-32192610 | Msa0948260:intron | 25.0% |
| ! | TTTGAAAGTAGAAAGCAAAA+TGG | + | chr6_3:32192880-32192899 | None:intergenic | 25.0% |
| ! | ATATGAAATAACTTCCAACA+AGG | + | chr6_3:32192921-32192940 | None:intergenic | 25.0% |
| ! | TTCAATTATCGACAAAACTA+TGG | + | chr6_3:32193021-32193040 | None:intergenic | 25.0% |
| !! | TTTTGTTTGGGTTAAGGTTT+TGG | + | chr6_3:32189462-32189481 | None:intergenic | 30.0% |
| !!! | GACAAAGATTGGATTTTTTG+TGG | + | chr6_3:32189576-32189595 | None:intergenic | 30.0% |
| !! | GAGAAATGGATTTTGTGAAA+TGG | + | chr6_3:32189604-32189623 | None:intergenic | 30.0% |
| TTAATCAGAGTAAGGATGAT+AGG | - | chr6_3:32189816-32189835 | Msa0948260:CDS | 30.0% | |
| TAATCAGAGTAAGGATGATA+GGG | - | chr6_3:32189817-32189836 | Msa0948260:CDS | 30.0% | |
| AAAAAACTCACCTAACATAG+AGG | + | chr6_3:32189901-32189920 | None:intergenic | 30.0% | |
| !!! | TTTGCTTGCTTTTGTTTTGT+GGG | - | chr6_3:32189952-32189971 | Msa0948260:intron | 30.0% |
| !!! | TTTGAGGTTTTGGTTTTTTG+TGG | - | chr6_3:32189976-32189995 | Msa0948260:intron | 30.0% |
| !!! | TTGAGGTTTTGGTTTTTTGT+GGG | - | chr6_3:32189977-32189996 | Msa0948260:intron | 30.0% |
| ATAGCATTTGTATAGTACTG+TGG | + | chr6_3:32190182-32190201 | None:intergenic | 30.0% | |
| ! | CTCAATTGATTTATGAGGTT+TGG | - | chr6_3:32190226-32190245 | Msa0948260:intron | 30.0% |
| ! | GTGATGACTTTAACTTCTAT+TGG | - | chr6_3:32190268-32190287 | Msa0948260:intron | 30.0% |
| ATTCTTGATATCGATCAATG+TGG | - | chr6_3:32190333-32190352 | Msa0948260:intron | 30.0% | |
| ! | GAAATTAGTCTCGCAAAAAT+AGG | + | chr6_3:32190509-32190528 | None:intergenic | 30.0% |
| ! | CATGTATGAAAGTGTACATA+AGG | - | chr6_3:32190619-32190638 | Msa0948260:intron | 30.0% |
| TGGATATTTGAGTGGAATTT+AGG | - | chr6_3:32190701-32190720 | Msa0948260:intron | 30.0% | |
| !! | TTTTCTTGCTTTTGTGTTGT+GGG | - | chr6_3:32190792-32190811 | Msa0948260:intron | 30.0% |
| TATGTATGAACATGTACACT+AGG | - | chr6_3:32190842-32190861 | Msa0948260:intron | 30.0% | |
| TGAGATTTCGATATTTGAGT+TGG | - | chr6_3:32190911-32190930 | Msa0948260:intron | 30.0% | |
| !! | TCGATATTTGAGTTGGAATT+TGG | - | chr6_3:32190918-32190937 | Msa0948260:intron | 30.0% |
| ! | TTTTGAATGTGCTTGTGAAA+AGG | + | chr6_3:32191293-32191312 | None:intergenic | 30.0% |
| AAGCACATTCAAAACTACAA+AGG | - | chr6_3:32191299-32191318 | Msa0948260:intron | 30.0% | |
| CAGTAGAATTCCCTTTATAT+AGG | - | chr6_3:32191384-32191403 | Msa0948260:intron | 30.0% | |
| ! | GAGTGAAGTACTTAGTTAAA+GGG | + | chr6_3:32191546-32191565 | None:intergenic | 30.0% |
| AACATCACTATAGTGAACTT+GGG | - | chr6_3:32191848-32191867 | Msa0948260:intron | 30.0% | |
| TAACGTCCTTTAGTAAGAAT+CGG | - | chr6_3:32192129-32192148 | Msa0948260:intron | 30.0% | |
| GTTAAACTGTAATCCAAACA+GGG | + | chr6_3:32192462-32192481 | None:intergenic | 30.0% | |
| AGTTAAACTGTAATCCAAAC+AGG | + | chr6_3:32192463-32192482 | None:intergenic | 30.0% | |
| ATATAGTTGAACACAGGTTA+TGG | - | chr6_3:32192597-32192616 | Msa0948260:intron | 30.0% | |
| !!! | GACATTGAAACGTTTTGATT+TGG | - | chr6_3:32192739-32192758 | Msa0948260:intron | 30.0% |
| ATCTTGAAAAAGATGTAGAG+AGG | - | chr6_3:32192790-32192809 | Msa0948260:CDS | 30.0% | |
| ACAATGGTTTAATTCCTTGT+TGG | - | chr6_3:32192904-32192923 | Msa0948260:CDS | 30.0% | |
| ! | AAAAGTATAACTGCTGCTAA+GGG | + | chr6_3:32193077-32193096 | None:intergenic | 30.0% |
| !! | CAGCAGTTATACTTTTGTTT+GGG | - | chr6_3:32193081-32193100 | Msa0948260:CDS | 30.0% |
| !! | AGCAGTTATACTTTTGTTTG+GGG | - | chr6_3:32193082-32193101 | Msa0948260:CDS | 30.0% |
| ! | TTTTTGTGGAGATTGAGGTT+GGG | + | chr6_3:32189562-32189581 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGGAGATTGAGGT+TGG | + | chr6_3:32189563-32189582 | None:intergenic | 35.0% |
| !!! | TGGATTTTTTGTGGAGATTG+AGG | + | chr6_3:32189567-32189586 | None:intergenic | 35.0% |
| !! | AAATGGGTTGTGACAAAGAT+TGG | + | chr6_3:32189587-32189606 | None:intergenic | 35.0% |
| !!! | AAGTGGGTTTTGAAGAGAAA+TGG | + | chr6_3:32189618-32189637 | None:intergenic | 35.0% |
| ! | TTCTGAGGGAAATTGAAAGT+GGG | + | chr6_3:32189634-32189653 | None:intergenic | 35.0% |
| ! | TTTCTGAGGGAAATTGAAAG+TGG | + | chr6_3:32189635-32189654 | None:intergenic | 35.0% |
| TTCAACCAAGCTTCAATACA+AGG | + | chr6_3:32189785-32189804 | None:intergenic | 35.0% | |
| ! | TTTGGGGTTTAATCAGAGTA+AGG | - | chr6_3:32189808-32189827 | Msa0948260:exon | 35.0% |
| ! | TAAGGATGATAGGGCTTTTT+GGG | - | chr6_3:32189826-32189845 | Msa0948260:CDS | 35.0% |
| GGGTTGTTAATAAGAGTGAT+TGG | - | chr6_3:32189846-32189865 | Msa0948260:CDS | 35.0% | |
| ATGTTACTGACCTCTATGTT+AGG | - | chr6_3:32189888-32189907 | Msa0948260:CDS | 35.0% | |
| !!! | GTTTGCTTGCTTTTGTTTTG+TGG | - | chr6_3:32189951-32189970 | Msa0948260:intron | 35.0% |
| !!! | CTTTTGTTTTGTGGGTTTTG+AGG | - | chr6_3:32189960-32189979 | Msa0948260:intron | 35.0% |
| !!! | TTTTGTGGGTTTTGAGGTTT+TGG | - | chr6_3:32189966-32189985 | Msa0948260:intron | 35.0% |
| !!! | TGAGGTTTTGGTTTTTTGTG+GGG | - | chr6_3:32189978-32189997 | Msa0948260:intron | 35.0% |
| GTGTGTGTATGATGAAAGTA+AGG | - | chr6_3:32190000-32190019 | Msa0948260:intron | 35.0% | |
| AAATGCTATTCACCTATGTG+TGG | - | chr6_3:32190193-32190212 | Msa0948260:intron | 35.0% | |
| ! | AGCAATTTTGAACCACACAT+AGG | + | chr6_3:32190208-32190227 | None:intergenic | 35.0% |
| TGAGGTTTGGATGTTTGAAT+TGG | - | chr6_3:32190239-32190258 | Msa0948260:intron | 35.0% | |
| !! | CTTCTTTTGTTTGCTTGCTT+CGG | - | chr6_3:32190560-32190579 | Msa0948260:intron | 35.0% |
| ! | AATTTTGAACCACACAATGG+TGG | + | chr6_3:32190660-32190679 | None:intergenic | 35.0% |
| ! | AGCAATTTTGAACCACACAA+TGG | + | chr6_3:32190663-32190682 | None:intergenic | 35.0% |
| GTGGTTCAAAATTGCTCAAT+TGG | - | chr6_3:32190212-32190231 | Msa0948260:intron | 35.0% | |
| TTTGTAAGTAGCTAATGCGA+TGG | - | chr6_3:32190748-32190767 | Msa0948260:intron | 35.0% | |
| !! | GTTTTCTTGCTTTTGTGTTG+TGG | - | chr6_3:32190791-32190810 | Msa0948260:intron | 35.0% |
| TTATGTTATTCCCCTTTGTG+TGG | - | chr6_3:32190867-32190886 | Msa0948260:intron | 35.0% | |
| ACTACTTTGAACCACACAAA+GGG | + | chr6_3:32190881-32190900 | None:intergenic | 35.0% | |
| TACTACTTTGAACCACACAA+AGG | + | chr6_3:32190882-32190901 | None:intergenic | 35.0% | |
| TGTGTGGTTCAAAGTAGTAA+TGG | - | chr6_3:32190883-32190902 | Msa0948260:intron | 35.0% | |
| GTGTGGTTCAAAGTAGTAAT+GGG | - | chr6_3:32190884-32190903 | Msa0948260:intron | 35.0% | |
| TCTTGATGTTGCTGAGAATT+AGG | - | chr6_3:32191007-32191026 | Msa0948260:intron | 35.0% | |
| TGCTGAGAATTAGGTTAATG+TGG | - | chr6_3:32191016-32191035 | Msa0948260:intron | 35.0% | |
| TAACCAGTGTTGTCAAATAG+CGG | - | chr6_3:32191042-32191061 | Msa0948260:intron | 35.0% | |
| ! | AAAGCTAGTGTTATCGATTG+TGG | + | chr6_3:32191121-32191140 | None:intergenic | 35.0% |
| GTTTATGATGTCTGTGACTA+TGG | + | chr6_3:32191146-32191165 | None:intergenic | 35.0% | |
| CATCATAAACCTTAACGTGA+CGG | - | chr6_3:32191156-32191175 | Msa0948260:intron | 35.0% | |
| ! | AACGCATGCAATCACATTTT+GGG | + | chr6_3:32191182-32191201 | None:intergenic | 35.0% |
| ! | AAACGCATGCAATCACATTT+TGG | + | chr6_3:32191183-32191202 | None:intergenic | 35.0% |
| ! | GGAGTGAAGTACTTAGTTAA+AGG | + | chr6_3:32191547-32191566 | None:intergenic | 35.0% |
| TAATAGAACTGAGTCAGTCT+TGG | - | chr6_3:32191711-32191730 | Msa0948260:intron | 35.0% | |
| CAATGTGAATGTTCGGTAAT+CGG | + | chr6_3:32191791-32191810 | None:intergenic | 35.0% | |
| ACGACAACAATGTGAATGTT+CGG | + | chr6_3:32191798-32191817 | None:intergenic | 35.0% | |
| ATTTGACCAATACCAGTGAA+GGG | + | chr6_3:32191826-32191845 | None:intergenic | 35.0% | |
| TATTTGACCAATACCAGTGA+AGG | + | chr6_3:32191827-32191846 | None:intergenic | 35.0% | |
| CAACATCACTATAGTGAACT+TGG | - | chr6_3:32191847-32191866 | Msa0948260:intron | 35.0% | |
| ATAATCCTGATTAGGAACCA+TGG | - | chr6_3:32191912-32191931 | Msa0948260:intron | 35.0% | |
| TTTGCACATTCAGTTAGAGT+TGG | + | chr6_3:32192074-32192093 | None:intergenic | 35.0% | |
| GCTACTCTCATATACTCTAA+TGG | - | chr6_3:32192102-32192121 | Msa0948260:intron | 35.0% | |
| TCCTTTAGTAAGAATCGGTT+CGG | - | chr6_3:32192134-32192153 | Msa0948260:intron | 35.0% | |
| CTGATGGAGAAGTTAGATAA+AGG | + | chr6_3:32192296-32192315 | None:intergenic | 35.0% | |
| GATACTGTTGACAGAGTTTA+TGG | + | chr6_3:32192641-32192660 | None:intergenic | 35.0% | |
| !!! | ACATCTTTTTCAAGATTCCC+AGG | + | chr6_3:32192786-32192805 | None:intergenic | 35.0% |
| GAAAGCAAAATGGCTATCTA+TGG | + | chr6_3:32192870-32192889 | None:intergenic | 35.0% | |
| ! | CAAAAGTATAACTGCTGCTA+AGG | + | chr6_3:32193078-32193097 | None:intergenic | 35.0% |
| ! | GCAGCAGTTATACTTTTGTT+TGG | - | chr6_3:32193080-32193099 | Msa0948260:CDS | 35.0% |
| GAAGCAATGATAAGTATGCA+GGG | + | chr6_3:32193148-32193167 | None:intergenic | 35.0% | |
| AGAAGCAATGATAAGTATGC+AGG | + | chr6_3:32193149-32193168 | None:intergenic | 35.0% | |
| TGTGAAGGTTAAGGTTGTGA+TGG | + | chr6_3:32189519-32189538 | None:intergenic | 40.0% | |
| ! | CAGAAAACAATGGCGGAAAT+GGG | + | chr6_3:32189659-32189678 | None:intergenic | 40.0% |
| ACCTTTGCAGAAAACAATGG+CGG | + | chr6_3:32189666-32189685 | None:intergenic | 40.0% | |
| CGAACCTTTGCAGAAAACAA+TGG | + | chr6_3:32189669-32189688 | None:intergenic | 40.0% | |
| CACTCATCTTCAGGAACTAA+GGG | + | chr6_3:32189713-32189732 | None:intergenic | 40.0% | |
| ! | TACAAAGGCTTAGTCTTCTC+AGG | + | chr6_3:32189749-32189768 | None:intergenic | 40.0% |
| GGCAAGCTATGTGTATACAA+AGG | + | chr6_3:32189764-32189783 | None:intergenic | 40.0% | |
| TGAAGCTTGGTTGAAGAGTT+TGG | - | chr6_3:32189790-32189809 | Msa0948260:three_prime_UTR | 40.0% | |
| GAAGCTTGGTTGAAGAGTTT+GGG | - | chr6_3:32189791-32189810 | Msa0948260:three_prime_UTR | 40.0% | |
| AAGCTTGGTTGAAGAGTTTG+GGG | - | chr6_3:32189792-32189811 | Msa0948260:three_prime_UTR | 40.0% | |
| ! | GTAAGGATGATAGGGCTTTT+TGG | - | chr6_3:32189825-32189844 | Msa0948260:CDS | 40.0% |
| ACACATTGACACGTCAATAC+CGG | - | chr6_3:32190064-32190083 | Msa0948260:intron | 40.0% | |
| GTAGCACAATTTGACAACAC+TGG | + | chr6_3:32190365-32190384 | None:intergenic | 40.0% | |
| !! | AATTGCTCAATTGGTTCGTG+AGG | - | chr6_3:32190676-32190695 | Msa0948260:intron | 40.0% |
| GTGAGGTTTGGATATTTGAG+TGG | - | chr6_3:32190693-32190712 | Msa0948260:intron | 40.0% | |
| CTACTTTGAACCACACAAAG+GGG | + | chr6_3:32190880-32190899 | None:intergenic | 40.0% | |
| ! | ACATACCTTCTAGCTACTCT+GGG | + | chr6_3:32191261-32191280 | None:intergenic | 40.0% |
| ! | TACATACCTTCTAGCTACTC+TGG | + | chr6_3:32191262-32191281 | None:intergenic | 40.0% |
| ! | GAGTAGCTAGAAGGTATGTA+TGG | - | chr6_3:32191262-32191281 | Msa0948260:intron | 40.0% |
| CCACAATGCATCATTAGCAT+AGG | + | chr6_3:32191445-32191464 | None:intergenic | 40.0% | |
| CCTATGCTAATGATGCATTG+TGG | - | chr6_3:32191442-32191461 | Msa0948260:intron | 40.0% | |
| ACAATCTCATCAGCAGAGAA+GGG | + | chr6_3:32191481-32191500 | None:intergenic | 40.0% | |
| GGAGAATATAACGTGTGGAT+CGG | + | chr6_3:32191617-32191636 | None:intergenic | 40.0% | |
| GCATATAATAGCTATCGCAC+GGG | + | chr6_3:32191638-32191657 | None:intergenic | 40.0% | |
| GGCATATAATAGCTATCGCA+CGG | + | chr6_3:32191639-32191658 | None:intergenic | 40.0% | |
| TTATATGCCGAGCCTAATGA+AGG | - | chr6_3:32191650-32191669 | Msa0948260:intron | 40.0% | |
| TATATGCCGAGCCTAATGAA+GGG | - | chr6_3:32191651-32191670 | Msa0948260:intron | 40.0% | |
| ! | TAATCGGTATAGTTCTGTCC+AGG | + | chr6_3:32191775-32191794 | None:intergenic | 40.0% |
| TTTGACCAATACCAGTGAAG+GGG | + | chr6_3:32191825-32191844 | None:intergenic | 40.0% | |
| !! | ACTTTCAAGTTCCAATGCCA+TGG | + | chr6_3:32191932-32191951 | None:intergenic | 40.0% |
| ! | TCCGAACCGATTCTTACTAA+AGG | + | chr6_3:32192138-32192157 | None:intergenic | 40.0% |
| AAAATGTGAGGTGTGCAGTA+AGG | + | chr6_3:32192262-32192281 | None:intergenic | 40.0% | |
| CAAACAGGGCAGTATACAAT+GGG | + | chr6_3:32192448-32192467 | None:intergenic | 40.0% | |
| !!! | GAAACGTTTTGATTTGGTGC+AGG | - | chr6_3:32192745-32192764 | Msa0948260:intron | 40.0% |
| TGCTGCTAAGGGAAAACAAA+GGG | + | chr6_3:32193066-32193085 | None:intergenic | 40.0% | |
| GAAGGTTAAGGTTGTGATGG+TGG | + | chr6_3:32189516-32189535 | None:intergenic | 45.0% | |
| GGTGGTGTTTGTGAAGGTTA+AGG | + | chr6_3:32189528-32189547 | None:intergenic | 45.0% | |
| !! | GATGTTGGTGGTGTTTGTGA+AGG | + | chr6_3:32189534-32189553 | None:intergenic | 45.0% |
| TGAGGTTGGGAATGTGATGT+TGG | + | chr6_3:32189549-32189568 | None:intergenic | 45.0% | |
| ! | GCAGAAAACAATGGCGGAAA+TGG | + | chr6_3:32189660-32189679 | None:intergenic | 45.0% |
| ! | TCCGCCATTGTTTTCTGCAA+AGG | - | chr6_3:32189662-32189681 | Msa0948260:three_prime_UTR | 45.0% |
| CCACTCATCTTCAGGAACTA+AGG | + | chr6_3:32189714-32189733 | None:intergenic | 45.0% | |
| CCTTAGTTCCTGAAGATGAG+TGG | - | chr6_3:32189711-32189730 | Msa0948260:three_prime_UTR | 45.0% | |
| !! | TTCTGAAGCCACTCATCTTC+AGG | + | chr6_3:32189722-32189741 | None:intergenic | 45.0% |
| GCTTGCCTTGTATTGAAGCT+TGG | - | chr6_3:32189777-32189796 | Msa0948260:three_prime_UTR | 45.0% | |
| ! | CCTCTGATCTAAGGTGTGTT+CGG | + | chr6_3:32190151-32190170 | None:intergenic | 45.0% |
| ! | ACACCTTAGATCAGAGGTGT+TGG | - | chr6_3:32190154-32190173 | Msa0948260:intron | 45.0% |
| GCTATCTATCCACCATTGTG+TGG | - | chr6_3:32190648-32190667 | Msa0948260:intron | 45.0% | |
| !! | CTCAATTGGTTCGTGAGGTT+TGG | - | chr6_3:32190681-32190700 | Msa0948260:intron | 45.0% |
| ACTCTGGGTCGATTATTCCA+TGG | + | chr6_3:32191246-32191265 | None:intergenic | 45.0% | |
| CAATGTTCCCTCACTCCTAT+AGG | - | chr6_3:32191412-32191431 | Msa0948260:intron | 45.0% | |
| ACCATAGCCTATAGGAGTGA+GGG | + | chr6_3:32191422-32191441 | None:intergenic | 45.0% | |
| AGCATAGGACCATAGCCTAT+AGG | + | chr6_3:32191430-32191449 | None:intergenic | 45.0% | |
| AATCTCATCAGCAGAGAAGG+GGG | + | chr6_3:32191479-32191498 | None:intergenic | 45.0% | |
| CAATCTCATCAGCAGAGAAG+GGG | + | chr6_3:32191480-32191499 | None:intergenic | 45.0% | |
| CACAATCTCATCAGCAGAGA+AGG | + | chr6_3:32191482-32191501 | None:intergenic | 45.0% | |
| CTTCTCTGCTGATGAGATTG+TGG | - | chr6_3:32191480-32191499 | Msa0948260:intron | 45.0% | |
| GAGATTGTGGTCTTTCCAGT+TGG | - | chr6_3:32191493-32191512 | Msa0948260:intron | 45.0% | |
| TCCCACGTTCCTGCAAAAAA+GGG | - | chr6_3:32191520-32191539 | Msa0948260:intron | 45.0% | |
| !!! | GTTAAAGGGCCCTTTTTTGC+AGG | + | chr6_3:32191532-32191551 | None:intergenic | 45.0% |
| ACTAAGTACTTCACTCCCTG+TGG | - | chr6_3:32191550-32191569 | Msa0948260:intron | 45.0% | |
| ATATGCCGAGCCTAATGAAG+GGG | - | chr6_3:32191652-32191671 | Msa0948260:intron | 45.0% | |
| CAAAATAGATTGGGCCCTCA+AGG | - | chr6_3:32191744-32191763 | Msa0948260:intron | 45.0% | |
| TTCTTCCCCTTCACTGGTAT+TGG | - | chr6_3:32191817-32191836 | Msa0948260:intron | 45.0% | |
| CAATGCCATGGTTCCTAATC+AGG | + | chr6_3:32191920-32191939 | None:intergenic | 45.0% | |
| CTGATTAGGAACCATGGCAT+TGG | - | chr6_3:32191918-32191937 | Msa0948260:intron | 45.0% | |
| !! | CTGTTGGTCTTCTAGCTTGT+TGG | - | chr6_3:32192402-32192421 | Msa0948260:intron | 45.0% |
| CCAAACAGGGCAGTATACAA+TGG | + | chr6_3:32192449-32192468 | None:intergenic | 45.0% | |
| CCATTGTATACTGCCCTGTT+TGG | - | chr6_3:32192446-32192465 | Msa0948260:intron | 45.0% | |
| TGGTGCAGGTATTTGAAGAG+TGG | - | chr6_3:32192759-32192778 | Msa0948260:intron | 45.0% | |
| AGGTATTTGAAGAGTGGACC+TGG | - | chr6_3:32192765-32192784 | Msa0948260:intron | 45.0% | |
| GGTATTTGAAGAGTGGACCT+GGG | - | chr6_3:32192766-32192785 | Msa0948260:intron | 45.0% | |
| GACATTGAGAATGCTGTGCT+TGG | - | chr6_3:32192840-32192859 | Msa0948260:CDS | 45.0% | |
| ATTGAGAATGCTGTGCTTGG+AGG | - | chr6_3:32192843-32192862 | Msa0948260:CDS | 45.0% | |
| GCTGCTAAGGGAAAACAAAG+GGG | + | chr6_3:32193065-32193084 | None:intergenic | 45.0% | |
| CTGCTGCTAAGGGAAAACAA+AGG | + | chr6_3:32193067-32193086 | None:intergenic | 45.0% | |
| GGTTGGGAATGTGATGTTGG+TGG | + | chr6_3:32189546-32189565 | None:intergenic | 50.0% | |
| !! | GGCGGAAATGGGTTTTCTGA+GGG | + | chr6_3:32189648-32189667 | None:intergenic | 50.0% |
| !! | TGGCGGAAATGGGTTTTCTG+AGG | + | chr6_3:32189649-32189668 | None:intergenic | 50.0% |
| CCGAACACACCTTAGATCAG+AGG | - | chr6_3:32190148-32190167 | Msa0948260:intron | 50.0% | |
| GCACCAACACCTCTGATCTA+AGG | + | chr6_3:32190160-32190179 | None:intergenic | 50.0% | |
| !! | GCTTCGGTGTTGTGAGTTTG+AGG | - | chr6_3:32190576-32190595 | Msa0948260:intron | 50.0% |
| ACGCCGCTATTTGACAACAC+TGG | + | chr6_3:32191048-32191067 | None:intergenic | 50.0% | |
| ! | CATTTTGGGCCGTCACGTTA+AGG | + | chr6_3:32191168-32191187 | None:intergenic | 50.0% |
| ATCGACCCAGAGTAGCTAGA+AGG | - | chr6_3:32191253-32191272 | Msa0948260:intron | 50.0% | |
| TCCCTCACTCCTATAGGCTA+TGG | - | chr6_3:32191418-32191437 | Msa0948260:intron | 50.0% | |
| GACCATAGCCTATAGGAGTG+AGG | + | chr6_3:32191423-32191442 | None:intergenic | 50.0% | |
| CTCCCACGTTCCTGCAAAAA+AGG | - | chr6_3:32191519-32191538 | Msa0948260:intron | 50.0% | |
| !!! | GCCCTTTTTTGCAGGAACGT+GGG | + | chr6_3:32191524-32191543 | None:intergenic | 50.0% |
| AAGTACTTCACTCCCTGTGG+TGG | - | chr6_3:32191553-32191572 | Msa0948260:intron | 50.0% | |
| AGTACTTCACTCCCTGTGGT+GGG | - | chr6_3:32191554-32191573 | Msa0948260:intron | 50.0% | |
| GCACGGGAGAATATAACGTG+TGG | + | chr6_3:32191622-32191641 | None:intergenic | 50.0% | |
| CAAGATCCTTACTCGGGATC+CGG | + | chr6_3:32191678-32191697 | None:intergenic | 50.0% | |
| CCAGCTCAAGATCCTTACTC+GGG | + | chr6_3:32191684-32191703 | None:intergenic | 50.0% | |
| CCCAGCTCAAGATCCTTACT+CGG | + | chr6_3:32191685-32191704 | None:intergenic | 50.0% | |
| CCGAGTAAGGATCTTGAGCT+GGG | - | chr6_3:32191682-32191701 | Msa0948260:intron | 50.0% | |
| TTGTCGTTCTTCCCCTTCAC+TGG | - | chr6_3:32191811-32191830 | Msa0948260:intron | 50.0% | |
| TGCTACGTGTCAGTGATCTG+AGG | + | chr6_3:32191979-32191998 | None:intergenic | 50.0% | |
| !!! | GGCCCTTTTTTGCAGGAACG+TGG | + | chr6_3:32191525-32191544 | None:intergenic | 55.0% |
| GTACTTCACTCCCTGTGGTG+GGG | - | chr6_3:32191555-32191574 | Msa0948260:intron | 55.0% | |
| TACTTCACTCCCTGTGGTGG+GGG | - | chr6_3:32191556-32191575 | Msa0948260:intron | 55.0% | |
| AACAAGCTACCCCCACCACA+GGG | + | chr6_3:32191568-32191587 | None:intergenic | 55.0% | |
| CCCGAGTAAGGATCTTGAGC+TGG | - | chr6_3:32191681-32191700 | Msa0948260:intron | 55.0% | |
| ATAGATTGGGCCCTCAAGGC+TGG | - | chr6_3:32191748-32191767 | Msa0948260:intron | 55.0% | |
| TAGATTGGGCCCTCAAGGCT+GGG | - | chr6_3:32191749-32191768 | Msa0948260:intron | 55.0% | |
| GGAACGTGGGAGCTTCCAAC+TGG | + | chr6_3:32191511-32191530 | None:intergenic | 60.0% | |
| CAACAAGCTACCCCCACCAC+AGG | + | chr6_3:32191569-32191588 | None:intergenic | 60.0% | |
| TCCGGCCCCTTCATTAGGCT+CGG | + | chr6_3:32191660-32191679 | None:intergenic | 60.0% | |
| GCCGAGCCTAATGAAGGGGC+CGG | - | chr6_3:32191656-32191675 | Msa0948260:intron | 65.0% | |
| CGGGATCCGGCCCCTTCATT+AGG | + | chr6_3:32191665-32191684 | None:intergenic | 65.0% | |
| AAGGGGCCGGATCCCGAGTA+AGG | - | chr6_3:32191669-32191688 | Msa0948260:intron | 65.0% | |
| CTGTCCAGGCCCAGCCTTGA+GGG | + | chr6_3:32191761-32191780 | None:intergenic | 65.0% | |
| TCTGTCCAGGCCCAGCCTTG+AGG | + | chr6_3:32191762-32191781 | None:intergenic | 65.0% | |
| TGGGCCCTCAAGGCTGGGCC+TGG | - | chr6_3:32191754-32191773 | Msa0948260:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 32189446 | 32193239 | 32189446 | ID=Msa0948260;Name=Msa0948260 |
| chr6_3 | mRNA | 32189446 | 32193239 | 32189446 | ID=Msa0948260-mRNA-1;Parent=Msa0948260;Name=Msa0948260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=63|1|1|1|0|1|2|367|168 |
| chr6_3 | exon | 32189446 | 32189918 | 32189446 | ID=Msa0948260-mRNA-1:exon:8410;Parent=Msa0948260-mRNA-1 |
| chr6_3 | exon | 32192776 | 32193239 | 32192776 | ID=Msa0948260-mRNA-1:exon:8409;Parent=Msa0948260-mRNA-1 |
| chr6_3 | five_prime_UTR | 32193177 | 32193239 | 32193177 | ID=Msa0948260-mRNA-1:five_prime_utr;Parent=Msa0948260-mRNA-1 |
| chr6_3 | CDS | 32192776 | 32193176 | 32192776 | ID=Msa0948260-mRNA-1:cds;Parent=Msa0948260-mRNA-1 |
| chr6_3 | CDS | 32189813 | 32189918 | 32189813 | ID=Msa0948260-mRNA-1:cds;Parent=Msa0948260-mRNA-1 |
| chr6_3 | three_prime_UTR | 32189446 | 32189812 | 32189446 | ID=Msa0948260-mRNA-1:three_prime_utr;Parent=Msa0948260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
