AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701320 MtrunA17_Chr8g0379301 86.850 327 28 5 1 322 1 317 0.0 549
Msa0701320 MtrunA17_Chr4g0045151 75.839 149 21 5 1 144 1 139 3.45e-62 194
Msa0701320 MtrunA17_Chr4g0045161 98.913 92 1 0 191 282 1 92 5.45e-55 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701320 AT3G19810.2 64.113 248 81 5 74 321 75 314 4.01e-104 308
Msa0701320 AT3G19810.1 64.113 248 81 5 74 321 75 314 4.01e-104 308

Find 86 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGGTGCCGCAAATATA+CGG 0.259081 4_4:+72730346 Msa0701320:three_prime_UTR
ATGAATTCAGTATGTGATTC+TGG 0.271880 4_4:+72729952 Msa0701320:CDS
CCTCAATTTCTTCTTCTTCC+TGG 0.279746 4_4:-72725951 None:intergenic
ATGTCAATTTGTTTCTCTTC+AGG 0.284068 4_4:-72729889 None:intergenic
CTAGGCCTCACAGCTATCTT+TGG 0.319468 4_4:+72730229 Msa0701320:three_prime_UTR
GTGGTTCTTCAGTGAGTAAA+AGG 0.321200 4_4:-72729738 None:intergenic
TCATCACGCTTATGTGTAAT+AGG 0.323398 4_4:+72725996 Msa0701320:CDS
ATAGTCTCTGGTTCATTAAC+AGG 0.339088 4_4:-72729760 None:intergenic
TTCCATTGAGAGAAACAAAA+AGG 0.348900 4_4:-72725488 None:intergenic
CTTTGTAAAATAAGACATAT+TGG 0.354208 4_4:+72725584 Msa0701320:CDS
TTTGCTACAGCTGCAATTGC+CGG 0.362751 4_4:-72730016 None:intergenic
ATTGCAAGAAAATGTTGTTA+TGG 0.373717 4_4:-72725528 None:intergenic
ACATGAATAAGTTCATGTTA+TGG 0.385007 4_4:+72730101 Msa0701320:exon
AAGGTACAATGTCCTTTGAT+TGG 0.389396 4_4:+72725684 Msa0701320:CDS
AAGAAGAAATTGAGGCTTGA+TGG 0.392126 4_4:+72725959 Msa0701320:CDS
TGTTAATGAACCAGAGACTA+TGG 0.398499 4_4:+72729762 Msa0701320:CDS
AGCATAAACTCGCGGATAGC+GGG 0.401805 4_4:+72730312 Msa0701320:three_prime_UTR
ATCTCGAATGTTCTCTCGTA+TGG 0.408233 4_4:+72725252 Msa0701320:five_prime_UTR
GAGGAAAGCTTTGGCCCACT+TGG 0.410018 4_4:+72730051 Msa0701320:CDS
TGACGACGTAAGAGAGTAGA+TGG 0.411844 4_4:-72725345 None:intergenic
TGTTGTTTCTACCGGTGCTT+CGG 0.413723 4_4:-72725306 None:intergenic
GAAGAAATTGATAAAGATGA+AGG 0.421786 4_4:+72725725 Msa0701320:CDS
TTTGATACACTAACATGTTA+AGG 0.423678 4_4:+72730154 Msa0701320:three_prime_UTR
AAAGGACATTGTACCTTCTT+CGG 0.430018 4_4:-72725678 None:intergenic
GAAGTAAAAGAGGAAAGCTT+TGG 0.436034 4_4:+72730042 Msa0701320:CDS
AGGTACAATGTCCTTTGATT+GGG 0.438788 4_4:+72725685 Msa0701320:CDS
AGAAGAAATTGAGGCTTGAT+GGG 0.452423 4_4:+72725960 Msa0701320:CDS
GAACAGTTCTATGTTGAAAA+GGG 0.454686 4_4:-72725559 None:intergenic
GGAACAGTTCTATGTTGAAA+AGG 0.459393 4_4:-72725560 None:intergenic
ATCTGAACCGGAGTCCCATT+CGG 0.465444 4_4:-72725914 None:intergenic
CAAGTATGCATCAAAATGTA+AGG 0.466314 4_4:+72725634 Msa0701320:CDS
TTCTACCGGTGCTTCGGAAG+CGG 0.471845 4_4:-72725300 None:intergenic
TGAAGATGCACTAATTGATC+TGG 0.480827 4_4:+72729846 Msa0701320:CDS
TGCACTACTTTGGAGAGGTT+AGG 0.495564 4_4:+72725809 Msa0701320:CDS
AGAAGCGTTGTTGTTTCTAC+CGG 0.496611 4_4:-72725314 None:intergenic
GTTGGTGTCCCGTATATTTG+CGG 0.500212 4_4:-72730355 None:intergenic
AGTTTCTTTCATTCATACTC+AGG 0.504459 4_4:+72730186 Msa0701320:three_prime_UTR
TCGGAAGCGGCAAACTCAAA+AGG 0.509359 4_4:-72725287 None:intergenic
TAGCAAAGAGGAAGTAAAAG+AGG 0.510851 4_4:+72730032 Msa0701320:CDS
ACATCAATAGAAATCTGAAC+CGG 0.521267 4_4:-72725926 None:intergenic
GAGAATATGCTCTCAGCAGA+TGG 0.531020 4_4:-72729706 None:intergenic
AAGCGGCAAACTCAAAAGGT+TGG 0.531347 4_4:-72725283 None:intergenic
ACACCGAACTCCATAGTCTC+TGG 0.532243 4_4:-72729772 None:intergenic
GAAGACAAAATTCCAACCCT+TGG 0.539761 4_4:+72729805 Msa0701320:CDS
GAACCAGAGACTATGGAGTT+CGG 0.540372 4_4:+72729769 Msa0701320:CDS
CAATGGTGCCGCAAATATAC+GGG 0.540782 4_4:+72730347 Msa0701320:three_prime_UTR
AAAGGAGCTGAAGAGGATGA+AGG 0.540865 4_4:-72725470 None:intergenic
TGAATTCAGTATGTGATTCT+GGG 0.541883 4_4:+72729953 Msa0701320:CDS
GAGCATAAACTCGCGGATAG+CGG 0.546462 4_4:+72730311 Msa0701320:three_prime_UTR
TTCTTCATAGTCCCAATCAA+AGG 0.549462 4_4:-72725696 None:intergenic
CCAGGAAGAAGAAGAAATTG+AGG 0.557383 4_4:+72725951 Msa0701320:CDS
ACTTTGGAGAGGTTAGGTCT+AGG 0.558661 4_4:+72725815 Msa0701320:CDS
TCAATTTGTTTCTCTTCAGG+AGG 0.559183 4_4:-72729886 None:intergenic
AAGGAGCTGAAGAGGATGAA+GGG 0.560437 4_4:-72725469 None:intergenic
GGTGATTTATACACCGAAGA+AGG 0.561517 4_4:+72725665 Msa0701320:CDS
AGATTTCTATTGATGTTACC+AGG 0.564204 4_4:+72725933 Msa0701320:CDS
AAGAAATTGATAAAGATGAA+GGG 0.573818 4_4:+72725726 Msa0701320:CDS
TATATAACCGCACCTTCCCA+CGG 0.580542 4_4:-72725752 None:intergenic
TGGTTCTTCAGTGAGTAAAA+GGG 0.584264 4_4:-72729737 None:intergenic
GATGAAGGGTCGCCGTGGGA+AGG 0.585121 4_4:+72725740 Msa0701320:CDS
TCTCGAATGTTCTCTCGTAT+GGG 0.585673 4_4:+72725253 Msa0701320:five_prime_UTR
AGGGTCGCCGTGGGAAGGTG+CGG 0.591690 4_4:+72725745 Msa0701320:CDS
TGTGGTCAAAACTTTAACAC+CGG 0.593260 4_4:+72729997 Msa0701320:CDS
GAGGATGAAGGGGCTAAAAG+TGG 0.594967 4_4:-72725458 None:intergenic
TCTATGTTGAAAAGGGGTGA+AGG 0.595890 4_4:-72725552 None:intergenic
GTTTGCCGCTTCCGAAGCAC+CGG 0.596673 4_4:+72725295 Msa0701320:five_prime_UTR
GTCTCTGGTTCATTAACAGG+TGG 0.598843 4_4:-72729757 None:intergenic
GCTCTCTTAGATTTCCAAGT+GGG 0.608668 4_4:-72730065 None:intergenic
TGCTCTCTTAGATTTCCAAG+TGG 0.611043 4_4:-72730066 None:intergenic
GCGAACTACGAAAGCAGTGA+AGG 0.615142 4_4:+72725886 Msa0701320:CDS
ACGTAAGAGAGTAGATGGAG+AGG 0.615816 4_4:-72725340 None:intergenic
AGTATTGCACTACTTTGGAG+AGG 0.618407 4_4:+72725804 Msa0701320:CDS
ATTCTCGTCGAGATAATGCA+AGG 0.621779 4_4:+72730289 Msa0701320:three_prime_UTR
TCAAAATGTAAGGAGAATGA+TGG 0.623512 4_4:+72725644 Msa0701320:CDS
GTATGTGATTCTGGGTGCAA+AGG 0.624787 4_4:+72729961 Msa0701320:CDS
CCGTACAATACGCAAAGCAG+AGG 0.628185 4_4:+72725227 None:intergenic
AACAGTTCTATGTTGAAAAG+GGG 0.635344 4_4:-72725558 None:intergenic
AGGAGCTGAAGAGGATGAAG+GGG 0.635760 4_4:-72725468 None:intergenic
CGTACAATACGCAAAGCAGA+GGG 0.635952 4_4:+72725228 None:intergenic
CAATTGCAGCTGTAGCAAAG+AGG 0.644995 4_4:+72730020 Msa0701320:CDS
ATAAAGATGAAGGGTCGCCG+TGG 0.656022 4_4:+72725735 Msa0701320:CDS
TAAAGATGAAGGGTCGCCGT+GGG 0.662197 4_4:+72725736 Msa0701320:CDS
AAAGGTGCGTGCCTGAAATG+TGG 0.693871 4_4:+72729979 Msa0701320:CDS
ATGCAAGGAGCATAAACTCG+CGG 0.695261 4_4:+72730304 Msa0701320:three_prime_UTR
AACAAAAGGGTATAGTACAG+TGG 0.702952 4_4:-72725414 None:intergenic
GAATTCCAAAGATAGCTGTG+AGG 0.766937 4_4:-72730234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATTAATATTTATTTTTG+CGG - chr4_4:72726802-72726821 None:intergenic 10.0%
!!! AAAAAATATATTTTGCATTT+TGG + chr4_4:72727063-72727082 Msa0701320:intron 10.0%
!! AGAAAAAATGATAATAATTA+AGG + chr4_4:72727890-72727909 Msa0701320:intron 10.0%
!! GAAAAAATGATAATAATTAA+GGG + chr4_4:72727891-72727910 Msa0701320:intron 10.0%
!!! AATATGTCTTATTTTACAAA+GGG - chr4_4:72725585-72725604 None:intergenic 15.0%
!! TGATTAAACTAAAAACAAAT+CGG - chr4_4:72726359-72726378 None:intergenic 15.0%
!! ATATTAATATTACACAAACA+CGG - chr4_4:72727005-72727024 None:intergenic 15.0%
!! AATGTGAAATTTCAATTTAA+TGG + chr4_4:72727789-72727808 Msa0701320:intron 15.0%
!! CATACTACTTTATTAAAATT+TGG + chr4_4:72728274-72728293 Msa0701320:intron 15.0%
!!! GTTTTATGATTTTTTTTTTC+CGG + chr4_4:72729121-72729140 Msa0701320:intron 15.0%
!!! ATATGTCTTATTTTACAAAG+GGG - chr4_4:72725584-72725603 None:intergenic 20.0%
!!! CAATATGTCTTATTTTACAA+AGG - chr4_4:72725586-72725605 None:intergenic 20.0%
!! CTTTGTAAAATAAGACATAT+TGG + chr4_4:72725584-72725603 Msa0701320:CDS 20.0%
!! AAGAAATTGATAAAGATGAA+GGG + chr4_4:72725726-72725745 Msa0701320:CDS 20.0%
!!! TTTCTTATTCAGCATTTTTT+GGG - chr4_4:72726196-72726215 None:intergenic 20.0%
!!! GATTTGTTTTTAGTTTAATC+AGG + chr4_4:72726358-72726377 Msa0701320:intron 20.0%
!!! TAATATTTATTTTTGCGGTT+CGG - chr4_4:72726797-72726816 None:intergenic 20.0%
!!! ATGTGATTTTTATTTTGGAT+CGG + chr4_4:72727179-72727198 Msa0701320:intron 20.0%
!! CAAGCTATAAATTTCTTTAA+GGG - chr4_4:72727302-72727321 None:intergenic 20.0%
!! ACAAGCTATAAATTTCTTTA+AGG - chr4_4:72727303-72727322 None:intergenic 20.0%
!!! TTAAAATTTGGAGTAATTGA+CGG + chr4_4:72728286-72728305 Msa0701320:intron 20.0%
!! CCTATTTATAAGAGAAAATT+AGG - chr4_4:72728527-72728546 None:intergenic 20.0%
!!! CCTAATTTTCTCTTATAAAT+AGG + chr4_4:72728524-72728543 Msa0701320:intron 20.0%
!!! ATATAATATTAAGAGGTGTT+TGG - chr4_4:72728691-72728710 None:intergenic 20.0%
!! TAATAAACTGAGATTGATAA+TGG - chr4_4:72729159-72729178 None:intergenic 20.0%
!!! AACAACCAATATCATTTTTT+AGG - chr4_4:72729507-72729526 None:intergenic 20.0%
!!! TTCTTTCTTCTATTTTCATA+TGG - chr4_4:72729530-72729549 None:intergenic 20.0%
!! ATGAAAATAGAAGAAAGAAT+TGG + chr4_4:72729531-72729550 Msa0701320:intron 20.0%
!!! TTCTTTCTTTTATTTTCACA+TGG - chr4_4:72729562-72729581 None:intergenic 20.0%
!!! TTATGGATTTTCTAGTAAAT+CGG + chr4_4:72730118-72730137 Msa0701320:three_prime_UTR 20.0%
!!! GGTTTTAGTATGAAACAAAA+GGG - chr4_4:72725430-72725449 None:intergenic 25.0%
!!! AGGTTTTAGTATGAAACAAA+AGG - chr4_4:72725431-72725450 None:intergenic 25.0%
! ATTGCAAGAAAATGTTGTTA+TGG - chr4_4:72725531-72725550 None:intergenic 25.0%
! GAAGAAATTGATAAAGATGA+AGG + chr4_4:72725725-72725744 Msa0701320:CDS 25.0%
! AACCGATGTTTCAAAAAATA+AGG + chr4_4:72725847-72725866 Msa0701320:CDS 25.0%
!!! AGCCTTATTTTTTGAAACAT+CGG - chr4_4:72725852-72725871 None:intergenic 25.0%
! AAAAAATAAGGCTTCTGTTA+TGG + chr4_4:72725859-72725878 Msa0701320:CDS 25.0%
! AAAAATAAGGCTTCTGTTAT+GGG + chr4_4:72725860-72725879 Msa0701320:CDS 25.0%
!!! CTTTCTTATTCAGCATTTTT+TGG - chr4_4:72726197-72726216 None:intergenic 25.0%
!! TTTCTTAATGCTGTTTGAAA+TGG - chr4_4:72726421-72726440 None:intergenic 25.0%
! AAAGTGTATTTCATTGTAGT+AGG - chr4_4:72726453-72726472 None:intergenic 25.0%
!! ACTACAATGAAATACACTTT+TGG + chr4_4:72726453-72726472 Msa0701320:intron 25.0%
!!! ATCATCAACTGGTTTTAAAT+CGG - chr4_4:72726534-72726553 None:intergenic 25.0%
!!! CAAATATATTCGGTTTTTTG+CGG - chr4_4:72726691-72726710 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG - chr4_4:72727105-72727124 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+TGG + chr4_4:72727103-72727122 Msa0701320:intron 25.0%
! TCCAAAATAAAAATCACATG+CGG - chr4_4:72727178-72727197 None:intergenic 25.0%
!! ATCTTTTACACTGATGTTTA+GGG - chr4_4:72727249-72727268 None:intergenic 25.0%
!! TATCTTTTACACTGATGTTT+AGG - chr4_4:72727250-72727269 None:intergenic 25.0%
!! TTTATAGCTTGTGATTATAG+TGG + chr4_4:72727311-72727330 Msa0701320:intron 25.0%
! AGCACGACTATTTAAATATA+CGG - chr4_4:72727583-72727602 None:intergenic 25.0%
! AGAGTTAAATGGAAAGATAT+AGG + chr4_4:72727725-72727744 Msa0701320:intron 25.0%
! ACTATAAAGGATAAACTTCA+TGG - chr4_4:72727842-72727861 None:intergenic 25.0%
! AGCAGTGATAAATACTATAA+AGG - chr4_4:72727855-72727874 None:intergenic 25.0%
!! TTTGAAATAGTCCCTTTAAA+AGG + chr4_4:72727949-72727968 Msa0701320:intron 25.0%
!!! TTTTGTTGTCTCCTTTTAAA+GGG - chr4_4:72727963-72727982 None:intergenic 25.0%
!!! ATTTTGTTGTCTCCTTTTAA+AGG - chr4_4:72727964-72727983 None:intergenic 25.0%
!!! AGACAACAAAATTTTTCAAG+AGG + chr4_4:72727972-72727991 Msa0701320:intron 25.0%
!!! GACAACAAAATTTTTCAAGA+GGG + chr4_4:72727973-72727992 Msa0701320:intron 25.0%
!! CATACTTCTACATTTTTAAC+CGG + chr4_4:72728167-72728186 Msa0701320:intron 25.0%
! ATATCTATTCTATACTGTGT+TGG + chr4_4:72728389-72728408 Msa0701320:intron 25.0%
!! TTTTCTCTTATAAATAGGAC+CGG + chr4_4:72728529-72728548 Msa0701320:intron 25.0%
! TTATGTCTTATCTTATCACA+AGG + chr4_4:72728640-72728659 Msa0701320:intron 25.0%
! AACAGGGATATAATATTAAG+AGG - chr4_4:72728698-72728717 None:intergenic 25.0%
!!! ATAATGGATTACTATTGTTC+CGG - chr4_4:72729143-72729162 None:intergenic 25.0%
! AATAGCATGTAAGAATTCTT+TGG + chr4_4:72729215-72729234 Msa0701320:intron 25.0%
! GAACGATAAAATAAATATCC+AGG - chr4_4:72729375-72729394 None:intergenic 25.0%
! GAATAAAGTAACAAACCAAA+AGG + chr4_4:72729468-72729487 Msa0701320:intron 25.0%
! TTTCAAAAAACATAAGAGAC+AGG + chr4_4:72729911-72729930 Msa0701320:CDS 25.0%
! TTCAAAAAACATAAGAGACA+GGG + chr4_4:72729912-72729931 Msa0701320:CDS 25.0%
! ACATGAATAAGTTCATGTTA+TGG + chr4_4:72730101-72730120 Msa0701320:exon 25.0%
! TTTGATACACTAACATGTTA+AGG + chr4_4:72730154-72730173 Msa0701320:three_prime_UTR 25.0%
TTCCATTGAGAGAAACAAAA+AGG - chr4_4:72725491-72725510 None:intergenic 30.0%
AACAGTTCTATGTTGAAAAG+GGG - chr4_4:72725561-72725580 None:intergenic 30.0%
GAACAGTTCTATGTTGAAAA+GGG - chr4_4:72725562-72725581 None:intergenic 30.0%
CAAGTATGCATCAAAATGTA+AGG + chr4_4:72725634-72725653 Msa0701320:CDS 30.0%
TCAAAATGTAAGGAGAATGA+TGG + chr4_4:72725644-72725663 Msa0701320:CDS 30.0%
!! TTTTGAGTATTGCACTACTT+TGG + chr4_4:72725799-72725818 Msa0701320:CDS 30.0%
!!! TTTTTGAAACATCGGTTGAA+AGG - chr4_4:72725844-72725863 None:intergenic 30.0%
ACATCAATAGAAATCTGAAC+CGG - chr4_4:72725929-72725948 None:intergenic 30.0%
AGATTTCTATTGATGTTACC+AGG + chr4_4:72725933-72725952 Msa0701320:CDS 30.0%
!! CCCAGAAATTTTAACATTTG+GGG - chr4_4:72726114-72726133 None:intergenic 30.0%
CCCCAAATGTTAAAATTTCT+GGG + chr4_4:72726111-72726130 Msa0701320:intron 30.0%
!! CCCCAGAAATTTTAACATTT+GGG - chr4_4:72726115-72726134 None:intergenic 30.0%
CCCAAATGTTAAAATTTCTG+GGG + chr4_4:72726112-72726131 Msa0701320:intron 30.0%
!! ACCCCAGAAATTTTAACATT+TGG - chr4_4:72726116-72726135 None:intergenic 30.0%
! TTTTAGCAAAACTAACAGGA+CGG - chr4_4:72726270-72726289 None:intergenic 30.0%
!!! ATGGTTTTAGCAAAACTAAC+AGG - chr4_4:72726274-72726293 None:intergenic 30.0%
!! TAGTTTTGCTAAAACCATGT+AGG + chr4_4:72726276-72726295 Msa0701320:intron 30.0%
! CTACTGATGTTTTCTTGTTA+CGG - chr4_4:72726607-72726626 None:intergenic 30.0%
GTAACAAGAAAACATCAGTA+GGG + chr4_4:72726606-72726625 Msa0701320:intron 30.0%
TAACAAGAAAACATCAGTAG+GGG + chr4_4:72726607-72726626 Msa0701320:intron 30.0%
!!! TTTGCGGTTTTATTTTGGAT+CGG - chr4_4:72726647-72726666 None:intergenic 30.0%
!!! GGTTTTCGATTTTTTTGGAT+CGG - chr4_4:72726670-72726689 None:intergenic 30.0%
! TTTGCGGTTTTCGATTTTTT+TGG - chr4_4:72726675-72726694 None:intergenic 30.0%
CGCAAAAAACCGAATATATT+TGG + chr4_4:72726689-72726708 Msa0701320:intron 30.0%
CAAACGCATCCAAATATATT+CGG - chr4_4:72726701-72726720 None:intergenic 30.0%
TTTGTAAAAACCGCTAAGAT+CGG + chr4_4:72726729-72726748 Msa0701320:intron 30.0%
CACAAACACGGTAAAATAAT+AGG - chr4_4:72726993-72727012 None:intergenic 30.0%
!!! GTTTAATTTGGATCGGTTTT+TGG - chr4_4:72727093-72727112 None:intergenic 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG - chr4_4:72727100-72727119 None:intergenic 30.0%
TAAACCGCATATATTTGGAT+CGG + chr4_4:72727108-72727127 Msa0701320:intron 30.0%
AATAAAAATCACATGCGGTT+CGG - chr4_4:72727173-72727192 None:intergenic 30.0%
!! ACCGCATGTGATTTTTATTT+TGG + chr4_4:72727174-72727193 Msa0701320:intron 30.0%
! TCTTTTACACTGATGTTTAG+GGG - chr4_4:72727248-72727267 None:intergenic 30.0%
TTCATAATAGCTTGGTAAGT+GGG - chr4_4:72727508-72727527 None:intergenic 30.0%
AAATAAACTCATGCTTTCAG+TGG - chr4_4:72727538-72727557 None:intergenic 30.0%
GCATGAGTTTATTTGATATG+AGG + chr4_4:72727544-72727563 Msa0701320:intron 30.0%
GCACGACTATTTAAATATAC+GGG - chr4_4:72727582-72727601 None:intergenic 30.0%
ATAAAGGATAAACTTCATGG+AGG - chr4_4:72727839-72727858 None:intergenic 30.0%
! TTCAAGAGGGTCTTATATTT+AGG + chr4_4:72727986-72728005 Msa0701320:intron 30.0%
! TCAAGAGGGTCTTATATTTA+GGG + chr4_4:72727987-72728006 Msa0701320:intron 30.0%
TGATGAGATTCACCTATAAA+CGG + chr4_4:72728143-72728162 Msa0701320:intron 30.0%
! TTTTCTCTTGTAAATAGGAC+CGG - chr4_4:72728440-72728459 None:intergenic 30.0%
! CCAACTTTTCTCTTGTAAAT+AGG - chr4_4:72728445-72728464 None:intergenic 30.0%
CCTATTTACAAGAGAAAAGT+TGG + chr4_4:72728442-72728461 Msa0701320:intron 30.0%
TCTATACTGTGTTGTAGTAA+AGG + chr4_4:72728591-72728610 Msa0701320:intron 30.0%
CTATACTGTGTTGTAGTAAA+GGG + chr4_4:72728592-72728611 Msa0701320:intron 30.0%
! GCACAAGGTTTAAAATATGA+TGG - chr4_4:72728669-72728688 None:intergenic 30.0%
TTATTTGGACAGGTTTAACA+GGG - chr4_4:72728714-72728733 None:intergenic 30.0%
TTTATTTGGACAGGTTTAAC+AGG - chr4_4:72728715-72728734 None:intergenic 30.0%
CATGTCATACACAGTTTATT+TGG - chr4_4:72728729-72728748 None:intergenic 30.0%
ATAGCTCAATATATGAAGCA+TGG - chr4_4:72728833-72728852 None:intergenic 30.0%
GTTTATTTGTATCGTAGAGT+AGG + chr4_4:72728908-72728927 Msa0701320:intron 30.0%
TCGTTAAACAATTAGAACTC+GGG - chr4_4:72729050-72729069 None:intergenic 30.0%
GTCGTTAAACAATTAGAACT+CGG - chr4_4:72729051-72729070 None:intergenic 30.0%
CAAACCAATCATATCAAGAA+GGG - chr4_4:72729102-72729121 None:intergenic 30.0%
ACAAACCAATCATATCAAGA+AGG - chr4_4:72729103-72729122 None:intergenic 30.0%
CTAACAGATTAATTCCCTTT+AGG + chr4_4:72729281-72729300 Msa0701320:intron 30.0%
!! TTAGTTGTAGAGTATTTTCC+TGG + chr4_4:72729354-72729373 Msa0701320:intron 30.0%
TCAGGCCTAAAAAATGATAT+TGG + chr4_4:72729499-72729518 Msa0701320:intron 30.0%
AAGACAATATAGAACATGCA+AGG - chr4_4:72729600-72729619 None:intergenic 30.0%
AGAAGAAATAATCTGTACTG+TGG - chr4_4:72729626-72729645 None:intergenic 30.0%
! TCAATGTGATTTTCTGTTGA+AGG + chr4_4:72729674-72729693 Msa0701320:intron 30.0%
! ATGTCAATTTGTTTCTCTTC+AGG - chr4_4:72729892-72729911 None:intergenic 30.0%
ATGAATTCAGTATGTGATTC+TGG + chr4_4:72729952-72729971 Msa0701320:CDS 30.0%
TGAATTCAGTATGTGATTCT+GGG + chr4_4:72729953-72729972 Msa0701320:CDS 30.0%
!! TAAAGTTTTGACCACATTTC+AGG - chr4_4:72729993-72730012 None:intergenic 30.0%
AGTTTCTTTCATTCATACTC+AGG + chr4_4:72730186-72730205 Msa0701320:three_prime_UTR 30.0%
!! GTATTCTTTTAGTTACAGCT+AGG + chr4_4:72730211-72730230 Msa0701320:three_prime_UTR 30.0%
! AACAAAAGGGTATAGTACAG+TGG - chr4_4:72725417-72725436 None:intergenic 35.0%
!! CTCCTTTTTGTTTCTCTCAA+TGG + chr4_4:72725486-72725505 Msa0701320:CDS 35.0%
GGAACAGTTCTATGTTGAAA+AGG - chr4_4:72725563-72725582 None:intergenic 35.0%
AAAGGACATTGTACCTTCTT+CGG - chr4_4:72725681-72725700 None:intergenic 35.0%
AAGGTACAATGTCCTTTGAT+TGG + chr4_4:72725684-72725703 Msa0701320:CDS 35.0%
AGGTACAATGTCCTTTGATT+GGG + chr4_4:72725685-72725704 Msa0701320:CDS 35.0%
TTCTTCATAGTCCCAATCAA+AGG - chr4_4:72725699-72725718 None:intergenic 35.0%
AAGAAGAAATTGAGGCTTGA+TGG + chr4_4:72725959-72725978 Msa0701320:CDS 35.0%
AGAAGAAATTGAGGCTTGAT+GGG + chr4_4:72725960-72725979 Msa0701320:CDS 35.0%
TCATCACGCTTATGTGTAAT+AGG + chr4_4:72725996-72726015 Msa0701320:CDS 35.0%
! TTGCCATTGATTAATCCTTC+AGG + chr4_4:72726088-72726107 Msa0701320:intron 35.0%
GCCCCAAATGTTAAAATTTC+TGG + chr4_4:72726110-72726129 Msa0701320:intron 35.0%
!! AAACCAATTTTGGGTGTCAA+GGG - chr4_4:72726231-72726250 None:intergenic 35.0%
TTTAGCAAAACTAACAGGAC+GGG - chr4_4:72726269-72726288 None:intergenic 35.0%
GTTGTATGTGTCTCAAAACA+TGG + chr4_4:72726328-72726347 Msa0701320:intron 35.0%
TGTATTTCATTGTAGTAGGC+AGG - chr4_4:72726449-72726468 None:intergenic 35.0%
CTTATGCTCTTATCATCAAC+TGG - chr4_4:72726545-72726564 None:intergenic 35.0%
CGTAACAAGAAAACATCAGT+AGG + chr4_4:72726605-72726624 Msa0701320:intron 35.0%
!!! GGTTTTATTTTGGATCGGTT+TGG - chr4_4:72726642-72726661 None:intergenic 35.0%
!!! ATCGGTTTGCGGTTTTATTT+TGG - chr4_4:72726652-72726671 None:intergenic 35.0%
!!! GATTTTTTTGGATCGGTTTG+CGG - chr4_4:72726663-72726682 None:intergenic 35.0%
CGAATATATTTGGATGCGTT+TGG + chr4_4:72726699-72726718 Msa0701320:intron 35.0%
!!! TTTATTTTTGCGGTTCGGTT+CGG - chr4_4:72726792-72726811 None:intergenic 35.0%
! AGTGCCCTTTATTTCTTACT+CGG + chr4_4:72727341-72727360 Msa0701320:intron 35.0%
CAGACCGAGTAAGAAATAAA+GGG - chr4_4:72727348-72727367 None:intergenic 35.0%
TCAGACCGAGTAAGAAATAA+AGG - chr4_4:72727349-72727368 None:intergenic 35.0%
CTTCATAATAGCTTGGTAAG+TGG - chr4_4:72727509-72727528 None:intergenic 35.0%
CACTTACCAAGCTATTATGA+AGG + chr4_4:72727507-72727526 Msa0701320:intron 35.0%
CATTTAACTCTTAAGCTGAC+TGG - chr4_4:72727716-72727735 None:intergenic 35.0%
CAGTCAGCTTAAGAGTTAAA+TGG + chr4_4:72727714-72727733 Msa0701320:intron 35.0%
CACATTCGCAAAAGCAATAA+AGG - chr4_4:72727775-72727794 None:intergenic 35.0%
! GTAGAAGTATGTCCGTTTAT+AGG - chr4_4:72728158-72728177 None:intergenic 35.0%
TCAAATGCAAACTCAACTTC+CGG - chr4_4:72728189-72728208 None:intergenic 35.0%
GAAGTTGAGTTTGCATTTGA+TGG + chr4_4:72728189-72728208 Msa0701320:intron 35.0%
! TGTTTCTACTTTGCACTACA+TGG + chr4_4:72728238-72728257 Msa0701320:intron 35.0%
AGAACCAAGCAATTAGTTGT+TGG + chr4_4:72728342-72728361 Msa0701320:intron 35.0%
ATGCAACATTCCATGTAAAG+AGG - chr4_4:72728371-72728390 None:intergenic 35.0%
ACGTAATATAATACTCCCTC+CGG - chr4_4:72728551-72728570 None:intergenic 35.0%
!! GGGAGTATTATATTACGTGT+TGG + chr4_4:72728553-72728572 Msa0701320:intron 35.0%
!! GCAAGATGCAGTTTTAACAA+TGG + chr4_4:72728614-72728633 Msa0701320:intron 35.0%
CATACACAGTTTATTTGGAC+AGG - chr4_4:72728724-72728743 None:intergenic 35.0%
CAGTTATGCAGAAGAGAATA+TGG - chr4_4:72728767-72728786 None:intergenic 35.0%
AATATATGAAGCATGGAGAG+TGG - chr4_4:72728826-72728845 None:intergenic 35.0%
ATTTGTATCGTAGAGTAGGT+TGG + chr4_4:72728912-72728931 Msa0701320:intron 35.0%
TTTGTATCGTAGAGTAGGTT+GGG + chr4_4:72728913-72728932 Msa0701320:intron 35.0%
ATGGTCAATAGACCTTATAG+AGG + chr4_4:72728938-72728957 Msa0701320:intron 35.0%
TGGTCAATAGACCTTATAGA+GGG + chr4_4:72728939-72728958 Msa0701320:intron 35.0%
TTCAGAATGTATGGTGTAAC+TGG + chr4_4:72728973-72728992 Msa0701320:intron 35.0%
CGTTAAACAATTAGAACTCG+GGG - chr4_4:72729049-72729068 None:intergenic 35.0%
!!! TAACGACTGTTGCTTTTCTT+TGG + chr4_4:72729064-72729083 Msa0701320:intron 35.0%
!!! GTTGCTTTTCTTTGGACTTA+TGG + chr4_4:72729072-72729091 Msa0701320:intron 35.0%
TTGACCCTTCTTGATATGAT+TGG + chr4_4:72729095-72729114 Msa0701320:intron 35.0%
TATCACACCAAAATCAGGTT+TGG - chr4_4:72729196-72729215 None:intergenic 35.0%
GCTATTATCACACCAAAATC+AGG - chr4_4:72729201-72729220 None:intergenic 35.0%
ATACTCTACAACTAAGCAAG+TGG - chr4_4:72729349-72729368 None:intergenic 35.0%
! CTATGAGAATTGAGAGTATG+AGG + chr4_4:72729402-72729421 Msa0701320:intron 35.0%
! GGTACTAAAAAGTGTAAACG+TGG + chr4_4:72729423-72729442 Msa0701320:intron 35.0%
TGGTTCTTCAGTGAGTAAAA+GGG - chr4_4:72729740-72729759 None:intergenic 35.0%
! ATAGTCTCTGGTTCATTAAC+AGG - chr4_4:72729763-72729782 None:intergenic 35.0%
TGTTAATGAACCAGAGACTA+TGG + chr4_4:72729762-72729781 Msa0701320:CDS 35.0%
!!! ATGGAGTTCGGTGTTATTTT+TGG + chr4_4:72729781-72729800 Msa0701320:CDS 35.0%
!!! TGGAGTTCGGTGTTATTTTT+GGG + chr4_4:72729782-72729801 Msa0701320:CDS 35.0%
TGAAGATGCACTAATTGATC+TGG + chr4_4:72729846-72729865 Msa0701320:CDS 35.0%
! TCAATTTGTTTCTCTTCAGG+AGG - chr4_4:72729889-72729908 None:intergenic 35.0%
TGTGGTCAAAACTTTAACAC+CGG + chr4_4:72729997-72730016 Msa0701320:CDS 35.0%
TAGCAAAGAGGAAGTAAAAG+AGG + chr4_4:72730032-72730051 Msa0701320:CDS 35.0%
GAAGTAAAAGAGGAAAGCTT+TGG + chr4_4:72730042-72730061 Msa0701320:CDS 35.0%
GCGGGAAAAAAATACAACAA+TGG + chr4_4:72730330-72730349 Msa0701320:three_prime_UTR 35.0%
ATCTCGAATGTTCTCTCGTA+TGG + chr4_4:72725252-72725271 Msa0701320:five_prime_UTR 40.0%
TCTCGAATGTTCTCTCGTAT+GGG + chr4_4:72725253-72725272 Msa0701320:five_prime_UTR 40.0%
!! AGAAGCGTTGTTGTTTCTAC+CGG - chr4_4:72725317-72725336 None:intergenic 40.0%
GAAACAAAAAGGAGCTGAAG+AGG - chr4_4:72725480-72725499 None:intergenic 40.0%
TCTATGTTGAAAAGGGGTGA+AGG - chr4_4:72725555-72725574 None:intergenic 40.0%
GGTGATTTATACACCGAAGA+AGG + chr4_4:72725665-72725684 Msa0701320:CDS 40.0%
! AGTATTGCACTACTTTGGAG+AGG + chr4_4:72725804-72725823 Msa0701320:CDS 40.0%
! CAGTGAAGGATTTTCCGAAT+GGG + chr4_4:72725900-72725919 Msa0701320:CDS 40.0%
CCTCAATTTCTTCTTCTTCC+TGG - chr4_4:72725954-72725973 None:intergenic 40.0%
CCAGGAAGAAGAAGAAATTG+AGG + chr4_4:72725951-72725970 Msa0701320:CDS 40.0%
!! TTTTAACATTTGGGGCCTGA+AGG - chr4_4:72726106-72726125 None:intergenic 40.0%
!! AACCAATTTTGGGTGTCAAG+GGG - chr4_4:72726230-72726249 None:intergenic 40.0%
!! GAAACCAATTTTGGGTGTCA+AGG - chr4_4:72726232-72726251 None:intergenic 40.0%
TGATCAGCATGATTCCTACA+TGG - chr4_4:72726293-72726312 None:intergenic 40.0%
TGAAATGGAGCAGAAACTCT+TGG - chr4_4:72726406-72726425 None:intergenic 40.0%
! CTGATGTTTTCTTGTTACGG+AGG - chr4_4:72726604-72726623 None:intergenic 40.0%
AAAAACCGCTAAGATCGGAT+CGG + chr4_4:72726734-72726753 Msa0701320:intron 40.0%
CGAACCGATCCAAATATATG+CGG - chr4_4:72727115-72727134 None:intergenic 40.0%
CGCATATATTTGGATCGGTT+CGG + chr4_4:72727113-72727132 Msa0701320:intron 40.0%
!! ATATTTGGATCGGTTCGGTT+CGG + chr4_4:72727118-72727137 Msa0701320:intron 40.0%
GTTCAGCCTTCATAATAGCT+TGG - chr4_4:72727516-72727535 None:intergenic 40.0%
GAAACCATTCATTGCAACAC+AGG - chr4_4:72727622-72727641 None:intergenic 40.0%
TCATGGAGGTAGTAGATACT+GGG - chr4_4:72727825-72727844 None:intergenic 40.0%
TTCATGGAGGTAGTAGATAC+TGG - chr4_4:72727826-72727845 None:intergenic 40.0%
ACAGATCAGCAATGAAGCTA+AGG - chr4_4:72728060-72728079 None:intergenic 40.0%
GTTGTATGACACTGAAAGCA+AGG + chr4_4:72728314-72728333 Msa0701320:intron 40.0%
GACACCAACAACTAATTGCT+TGG - chr4_4:72728349-72728368 None:intergenic 40.0%
! TTGTTGGTGTCCTCTTTACA+TGG + chr4_4:72728358-72728377 Msa0701320:intron 40.0%
! GGAGGGAGTATGATATAACA+GGG - chr4_4:72728419-72728438 None:intergenic 40.0%
CTGTTATATCATACTCCCTC+CGG + chr4_4:72728418-72728437 Msa0701320:intron 40.0%
TCTCTTATAAATAGGACCGG+AGG + chr4_4:72728532-72728551 Msa0701320:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG + chr4_4:72728533-72728552 Msa0701320:intron 40.0%
!! ATTAAGAGGTGTTTGGCACA+AGG - chr4_4:72728684-72728703 None:intergenic 40.0%
ACGCGACATTTCAGAATGTA+TGG + chr4_4:72728964-72728983 Msa0701320:intron 40.0%
GTGTAACTGGACTTAAATGC+TGG + chr4_4:72728986-72729005 Msa0701320:intron 40.0%
ATTGCATCTAGACGCCTAAA+GGG - chr4_4:72729298-72729317 None:intergenic 40.0%
ACAACTAAGCAAGTGGACAA+TGG - chr4_4:72729342-72729361 None:intergenic 40.0%
AAGTAACAAACCAAAAGGCG+TGG + chr4_4:72729473-72729492 Msa0701320:intron 40.0%
GTGGTTCTTCAGTGAGTAAA+AGG - chr4_4:72729741-72729760 None:intergenic 40.0%
!!! GGAGTTCGGTGTTATTTTTG+GGG + chr4_4:72729783-72729802 Msa0701320:CDS 40.0%
GAAGACAAAATTCCAACCCT+TGG + chr4_4:72729805-72729824 Msa0701320:CDS 40.0%
ATTCCAACCCTTGGAAAAAG+TGG + chr4_4:72729814-72729833 Msa0701320:CDS 40.0%
GCTCTCTTAGATTTCCAAGT+GGG - chr4_4:72730068-72730087 None:intergenic 40.0%
TGCTCTCTTAGATTTCCAAG+TGG - chr4_4:72730069-72730088 None:intergenic 40.0%
GAATTCCAAAGATAGCTGTG+AGG - chr4_4:72730237-72730256 None:intergenic 40.0%
ATTCTCGTCGAGATAATGCA+AGG + chr4_4:72730289-72730308 Msa0701320:three_prime_UTR 40.0%
!! ACAATGGTGCCGCAAATATA+CGG + chr4_4:72730346-72730365 Msa0701320:three_prime_UTR 40.0%
AAGCGGCAAACTCAAAAGGT+TGG - chr4_4:72725286-72725305 None:intergenic 45.0%
!! TGTTGTTTCTACCGGTGCTT+CGG - chr4_4:72725309-72725328 None:intergenic 45.0%
ACGTAAGAGAGTAGATGGAG+AGG - chr4_4:72725343-72725362 None:intergenic 45.0%
TGACGACGTAAGAGAGTAGA+TGG - chr4_4:72725348-72725367 None:intergenic 45.0%
! GGGCTAAAAGTGGCATTTTC+AGG - chr4_4:72725451-72725470 None:intergenic 45.0%
AAGGAGCTGAAGAGGATGAA+GGG - chr4_4:72725472-72725491 None:intergenic 45.0%
AAAGGAGCTGAAGAGGATGA+AGG - chr4_4:72725473-72725492 None:intergenic 45.0%
TATATAACCGCACCTTCCCA+CGG - chr4_4:72725755-72725774 None:intergenic 45.0%
! TGCACTACTTTGGAGAGGTT+AGG + chr4_4:72725809-72725828 Msa0701320:CDS 45.0%
! ACTTTGGAGAGGTTAGGTCT+AGG + chr4_4:72725815-72725834 Msa0701320:CDS 45.0%
! GCAGTGAAGGATTTTCCGAA+TGG + chr4_4:72725899-72725918 Msa0701320:CDS 45.0%
GGGCCTGAAGGATTAATCAA+TGG - chr4_4:72726094-72726113 None:intergenic 45.0%
AACCCCTTGACACCCAAAAT+TGG + chr4_4:72726225-72726244 Msa0701320:intron 45.0%
! GGGGAGAGGAAACCAATTTT+GGG - chr4_4:72726240-72726259 None:intergenic 45.0%
! AGGGGAGAGGAAACCAATTT+TGG - chr4_4:72726241-72726260 None:intergenic 45.0%
! GCAGAAACTCTTGGCTAGTT+TGG - chr4_4:72726397-72726416 None:intergenic 45.0%
CTCGACGTCTTCAGTTACTT+TGG + chr4_4:72726565-72726584 Msa0701320:intron 45.0%
GAAATCCGATCCGATCTTAG+CGG - chr4_4:72726742-72726761 None:intergenic 45.0%
GCTAAGATCGGATCGGATTT+CGG + chr4_4:72726741-72726760 Msa0701320:intron 45.0%
!! AAATCACATGCGGTTCGGTT+CGG - chr4_4:72727168-72727187 None:intergenic 45.0%
GATGTCTGTAACTGGTCACA+AGG - chr4_4:72727438-72727457 None:intergenic 45.0%
CAAGGAACGATGTCTGTAAC+TGG - chr4_4:72727446-72727465 None:intergenic 45.0%
GAGTACACAGCAATCAGACA+AGG - chr4_4:72727464-72727483 None:intergenic 45.0%
! CGGAGGGAGTATGATATAAC+AGG - chr4_4:72728420-72728439 None:intergenic 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr4_4:72728436-72728455 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr4_4:72728437-72728456 None:intergenic 45.0%
AGCAAAGTGGAGGTTACTAG+TGG + chr4_4:72728875-72728894 Msa0701320:intron 45.0%
ATGTCGCGTTTCCCTCTATA+AGG - chr4_4:72728953-72728972 None:intergenic 45.0%
! CACAACGCCAAACCTGATTT+TGG + chr4_4:72729186-72729205 Msa0701320:intron 45.0%
CATTGCATCTAGACGCCTAA+AGG - chr4_4:72729299-72729318 None:intergenic 45.0%
GAGAATATGCTCTCAGCAGA+TGG - chr4_4:72729709-72729728 None:intergenic 45.0%
! GTCTCTGGTTCATTAACAGG+TGG - chr4_4:72729760-72729779 None:intergenic 45.0%
GAACCAGAGACTATGGAGTT+CGG + chr4_4:72729769-72729788 Msa0701320:CDS 45.0%
!!! GTCATCGCCACTTTTTCCAA+GGG - chr4_4:72729824-72729843 None:intergenic 45.0%
GTATGTGATTCTGGGTGCAA+AGG + chr4_4:72729961-72729980 Msa0701320:CDS 45.0%
TTTGCTACAGCTGCAATTGC+CGG - chr4_4:72730019-72730038 None:intergenic 45.0%
CAATTGCAGCTGTAGCAAAG+AGG + chr4_4:72730020-72730039 Msa0701320:CDS 45.0%
! ATGCAAGGAGCATAAACTCG+CGG + chr4_4:72730304-72730323 Msa0701320:three_prime_UTR 45.0%
!! CAATGGTGCCGCAAATATAC+GGG + chr4_4:72730347-72730366 Msa0701320:three_prime_UTR 45.0%
! GTTGGTGTCCCGTATATTTG+CGG - chr4_4:72730358-72730377 None:intergenic 45.0%
TCGGAAGCGGCAAACTCAAA+AGG - chr4_4:72725290-72725309 None:intergenic 50.0%
GAGGATGAAGGGGCTAAAAG+TGG - chr4_4:72725461-72725480 None:intergenic 50.0%
AGGAGCTGAAGAGGATGAAG+GGG - chr4_4:72725471-72725490 None:intergenic 50.0%
ATAAAGATGAAGGGTCGCCG+TGG + chr4_4:72725735-72725754 Msa0701320:CDS 50.0%
TAAAGATGAAGGGTCGCCGT+GGG + chr4_4:72725736-72725755 Msa0701320:CDS 50.0%
GCGAACTACGAAAGCAGTGA+AGG + chr4_4:72725886-72725905 Msa0701320:CDS 50.0%
! GGATTTTCCGAATGGGACTC+CGG + chr4_4:72725907-72725926 Msa0701320:CDS 50.0%
ATCTGAACCGGAGTCCCATT+CGG - chr4_4:72725917-72725936 None:intergenic 50.0%
ACTAACAGGACGGGAGGATA+GGG - chr4_4:72726260-72726279 None:intergenic 50.0%
AACTAACAGGACGGGAGGAT+AGG - chr4_4:72726261-72726280 None:intergenic 50.0%
AGCAAAACTAACAGGACGGG+AGG - chr4_4:72726266-72726285 None:intergenic 50.0%
!!! TTTTGCGGTTCGGTTCGGTT+TGG - chr4_4:72726787-72726806 None:intergenic 50.0%
!! TGCGGTTTGGATCGGTTTTG+AGG - chr4_4:72727216-72727235 None:intergenic 50.0%
!! CTGATGTTTAGGGGTGTTCG+CGG - chr4_4:72727239-72727258 None:intergenic 50.0%
CCATTCATTGCAACACAGGC+AGG - chr4_4:72727618-72727637 None:intergenic 50.0%
CCTGCCTGTGTTGCAATGAA+TGG + chr4_4:72727615-72727634 Msa0701320:intron 50.0%
TAGCCTGCAAGTCAGTTTGC+TGG + chr4_4:72727671-72727690 Msa0701320:intron 50.0%
! AGCCTGCAAGTCAGTTTGCT+GGG + chr4_4:72727672-72727691 Msa0701320:intron 50.0%
!! TTCCCAGCAAACTGACTTGC+AGG - chr4_4:72727677-72727696 None:intergenic 50.0%
GAGAGAGAGAGAGAGCAAAG+TGG + chr4_4:72728862-72728881 Msa0701320:intron 50.0%
AGAGAGAGAGAGCAAAGTGG+AGG + chr4_4:72728865-72728884 Msa0701320:intron 50.0%
! TCGTAGAGTAGGTTGGGTGA+TGG + chr4_4:72728919-72728938 Msa0701320:intron 50.0%
! GGGAGGGAAGCATATGTAAC+TGG - chr4_4:72729013-72729032 None:intergenic 50.0%
ACACCGAACTCCATAGTCTC+TGG - chr4_4:72729775-72729794 None:intergenic 50.0%
!!! TCGCCACTTTTTCCAAGGGT+TGG - chr4_4:72729820-72729839 None:intergenic 50.0%
!!! CGTCATCGCCACTTTTTCCA+AGG - chr4_4:72729825-72729844 None:intergenic 50.0%
! AAAGGTGCGTGCCTGAAATG+TGG + chr4_4:72729979-72729998 Msa0701320:CDS 50.0%
CTAGGCCTCACAGCTATCTT+TGG + chr4_4:72730229-72730248 Msa0701320:three_prime_UTR 50.0%
GAGCATAAACTCGCGGATAG+CGG + chr4_4:72730311-72730330 Msa0701320:three_prime_UTR 50.0%
AGCATAAACTCGCGGATAGC+GGG + chr4_4:72730312-72730331 Msa0701320:three_prime_UTR 50.0%
TTCTACCGGTGCTTCGGAAG+CGG - chr4_4:72725303-72725322 None:intergenic 55.0%
CTAACAGGACGGGAGGATAG+GGG - chr4_4:72726259-72726278 None:intergenic 55.0%
!! CGGTTCGGTTCGGTTTGGTT+CGG - chr4_4:72726782-72726801 None:intergenic 55.0%
!! ACATGCGGTTCGGTTCGGTT+TGG - chr4_4:72727163-72727182 None:intergenic 55.0%
GGGCAGTGACAACATTGGGA+GGG - chr4_4:72729029-72729048 None:intergenic 55.0%
CTCGGGGCAGTGACAACATT+GGG - chr4_4:72729033-72729052 None:intergenic 55.0%
ACTCGGGGCAGTGACAACAT+TGG - chr4_4:72729034-72729053 None:intergenic 55.0%
! AACCAAAAGGCGTGGACGTC+AGG + chr4_4:72729481-72729500 Msa0701320:intron 55.0%
! GAGGAAAGCTTTGGCCCACT+TGG + chr4_4:72730051-72730070 Msa0701320:CDS 55.0%
! GTTTGCCGCTTCCGAAGCAC+CGG + chr4_4:72725295-72725314 Msa0701320:five_prime_UTR 60.0%
! GTTCGCGGTGCGGTTTGGAT+CGG - chr4_4:72727224-72727243 None:intergenic 60.0%
!! GTTTAGGGGTGTTCGCGGTG+CGG - chr4_4:72727234-72727253 None:intergenic 60.0%
GGGGCAGTGACAACATTGGG+AGG - chr4_4:72729030-72729049 None:intergenic 60.0%
GATGAAGGGTCGCCGTGGGA+AGG + chr4_4:72725740-72725759 Msa0701320:CDS 65.0%
AGGACGGGAGGATAGGGGAG+AGG - chr4_4:72726254-72726273 None:intergenic 65.0%
! GGCCTGACGTCCACGCCTTT+TGG - chr4_4:72729486-72729505 None:intergenic 65.0%
AGGGTCGCCGTGGGAAGGTG+CGG + chr4_4:72725745-72725764 Msa0701320:CDS 70.0%
! GGGGTGTTCGCGGTGCGGTT+TGG - chr4_4:72727229-72727248 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72725237 72730378 72725237 ID=Msa0701320;Name=Msa0701320
chr4_4 mRNA 72725237 72730378 72725237 ID=Msa0701320-mRNA-1;Parent=Msa0701320;Name=Msa0701320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=218|1|1|1|1|1|2|277|322
chr4_4 exon 72725237 72726017 72725237 ID=Msa0701320-mRNA-1:exon:22225;Parent=Msa0701320-mRNA-1
chr4_4 exon 72729696 72730378 72729696 ID=Msa0701320-mRNA-1:exon:22226;Parent=Msa0701320-mRNA-1
chr4_4 five_prime_UTR 72725237 72725454 72725237 ID=Msa0701320-mRNA-1:five_prime_utr;Parent=Msa0701320-mRNA-1
chr4_4 CDS 72725455 72726017 72725455 ID=Msa0701320-mRNA-1:cds;Parent=Msa0701320-mRNA-1
chr4_4 CDS 72729696 72730101 72729696 ID=Msa0701320-mRNA-1:cds;Parent=Msa0701320-mRNA-1
chr4_4 three_prime_UTR 72730102 72730378 72730102 ID=Msa0701320-mRNA-1:three_prime_utr;Parent=Msa0701320-mRNA-1
Gene Sequence

>Msa0701320

ATGCCACTTTTAGCCCCTTCATCCTCTTCAGCTCCTTTTTGTTTCTCTCAATGGAACATTTACAATTCAAATTCCATAACAACATTTTCTTGCAATTCCTTCACCCCTTTTCAACATAGAACTGTTCCCCTTTGTAAAATAAGACATATTGGTATGCATCAAAATGTGTTATACAAACACAAGTATGCATCAAAATGTAAGGAGAATGATGGTGATTTATACACCGAAGAAGGTACAATGTCCTTTGATTGGGACTATGAAGAAGAAGAAGAAGAAATTGATAAAGATGAAGGGTCGCCGTGGGAAGGTGCGGTTATATACAAGAGAAATGCTGCAATCTTACATTTTGAGTATTGCACTACTTTGGAGAGGTTAGGTCTAGGAAACCTTTCAACCGATGTTTCAAAAAATAAGGCTTCTGTTATGGGATTGCGAACTACGAAAGCAGTGAAGGATTTTCCGAATGGGACTCCGGTTCAGATTTCTATTGATGTTACCAGGAAGAAGAAGAAATTGAGGCTTGATGGGATTATAAAAACTGTCATCACGCTTATGTGTAATAGGTGTTGCATGCCATCTGCTGAGAGCATATTCTCTGAGTTCTCCCTTTTACTCACTGAAGAACCACCTGTTAATGAACCAGAGACTATGGAGTTCGGTGTTATTTTTGGGGAAGACAAAATTCCAACCCTTGGAAAAAGTGGCGATGACGATGAAGATGCACTAATTGATCTGGATGATCAATTATATTTTCCTCCTGAAGAGAAACAAATTGACATTTCAAAAAACATAAGAGACAGGGTGCATCTTGAGATTACAATGAATTCAGTATGTGATTCTGGGTGCAAAGGTGCGTGCCTGAAATGTGGTCAAAACTTTAACACCGGCAATTGCAGCTGTAGCAAAGAGGAAGTAAAAGAGGAAAGCTTTGGCCCACTTGGAAATCTAAGAGAGCAGATGCAATTGTAA

Protein sequence

>Msa0701320

MPLLAPSSSSAPFCFSQWNIYNSNSITTFSCNSFTPFQHRTVPLCKIRHIGMHQNVLYKHKYASKCKENDGDLYTEEGTMSFDWDYEEEEEEIDKDEGSPWEGAVIYKRNAAILHFEYCTTLERLGLGNLSTDVSKNKASVMGLRTTKAVKDFPNGTPVQISIDVTRKKKKLRLDGIIKTVITLMCNRCCMPSAESIFSEFSLLLTEEPPVNEPETMEFGVIFGEDKIPTLGKSGDDDEDALIDLDDQLYFPPEEKQIDISKNIRDRVHLEITMNSVCDSGCKGACLKCGQNFNTGNCSCSKEEVKEESFGPLGNLREQMQL*