AlfalfaGEDB | MS.gene46798

M. sativa cultivar XinJiangDaYe / MS.gene46798

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009523 GO:0009654 GO:0009987 GO:0015979 GO:0019898 GO:0032991 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0098796 GO:0110165 GO:1902494 GO:1990204
PFAM: PF01789.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46798.t1	AFK43236.1	98.6	147	2	0	97	243	95	241	2.80E-77	298.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46798.t1	P82658	78.8	146	31	0	97	242	81	226	2.7e-65	250.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46798.t1	G7IWL6	98.6	147	2	0	97	243	96	242	2.0e-77	298.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene46798	0.829764	4.29E-55	-1.69E-46
MS.gene049171	MS.gene46798	0.861226	1.19E-63	-1.69E-46
MS.gene049173	MS.gene46798	0.867404	1.40E-65	-1.69E-46
MS.gene049217	MS.gene46798	0.87878	2.13E-69	-1.69E-46
MS.gene049222	MS.gene46798	0.875332	3.35E-68	-1.69E-46
MS.gene049232	MS.gene46798	0.811457	6.94E-51	-1.69E-46
MS.gene049285	MS.gene46798	0.892368	1.69E-74	-1.69E-46
MS.gene049320	MS.gene46798	0.895871	6.34E-76	-1.69E-46
MS.gene049369	MS.gene46798	0.828444	8.96E-55	-1.69E-46
MS.gene049427	MS.gene46798	0.876517	1.31E-68	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46798.t1	MTR_3g028150	92.958	213	13	1	31	243	32	242	6.94e-138	387

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46798.t1	AT3G63540	78.261	138	30	0	105	242	3	140	3.78e-82	242

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Find 46 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTCCTTCCAACCTTC+TGG	0.272048	3.3:+20693627	None:intergenic
AATATTTAACTTTCCTTTCT+GGG	0.289515	3.3:-20693530	MS.gene46798:CDS
AATTTGCAAGATATTATTAG+TGG	0.515902	3.3:-20693450	MS.gene46798:CDS
AGGAGATGATTCTGCTGCTA+TGG	0.480110	3.3:+20693749	None:intergenic
AGGTGGTGATGTTGTGAGAA+TGG	0.508602	3.3:+20693773	None:intergenic
CGACGTTCCAGAAGGTTGGA+AGG	0.585452	3.3:-20693634	MS.gene46798:CDS
CTAACTGACGAAACCCAGAA+AGG	0.634618	3.3:+20693517	None:intergenic
GAAGAAGTGAAAGATGATAA+AGG	0.482410	3.3:-20693408	MS.gene46798:CDS
GAATATTTAACTTTCCTTTC+TGG	0.121727	3.3:-20693531	MS.gene46798:CDS
GAGGAGGAGAAAATGGGTGG+TGG	0.579804	3.3:+20693921	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGTGAAAGATGATAA+AGG	-	chr3.3:20693773-20693792	MS.gene46798:CDS	30.0%
TTGTGTTTGAATGAGATAAG+AGG	+	chr3.3:20693338-20693357	None:intergenic	30.0%
TCCTGAGTGGAATAAAGATA+AGG	-	chr3.3:20693901-20693920	MS.gene46798:CDS	35.0%
TCCTTATCTTTATTCCACTC+AGG	+	chr3.3:20693905-20693924	None:intergenic	35.0%
TCTCCTTACAATCTCTACTA+CGG	-	chr3.3:20693449-20693468	MS.gene46798:CDS	35.0%
TCTTTCTCTGTTCTCTTCTT+TGG	+	chr3.3:20693632-20693651	None:intergenic	35.0%
GTACCGTAGTAGAGATTGTA+AGG	+	chr3.3:20693455-20693474	None:intergenic	40.0%
TCTTTATTCCACTCAGGAGT+AGG	+	chr3.3:20693899-20693918	None:intergenic	40.0%
TTCTGCTGAGTCTTTCTTGT+TGG	+	chr3.3:20693519-20693538	None:intergenic	40.0%
AAACGTTCCTTCCAACCTTC+TGG	+	chr3.3:20693557-20693576	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	20693236	20693967	20693236	ID=MS.gene46798
chr3.3	mRNA	20693236	20693967	20693236	ID=MS.gene46798.t1;Parent=MS.gene46798
chr3.3	exon	20693236	20693967	20693236	ID=MS.gene46798.t1.exon1;Parent=MS.gene46798.t1
chr3.3	CDS	20693236	20693967	20693236	ID=cds.MS.gene46798.t1;Parent=MS.gene46798.t1

Gene Sequence

>MS.gene46798

ATGGCCACAATTTTCTCATCATCACCACCACCCATTTTCTCCTCCTCCGCCGCCACCACCACCACCACAACAACCTCCACAACCACCACCATATCAAAACCTCTTATCTCATTCAAACACAAACAACCTCTAATAACCACCACCTTAACAGCAGCAGCAGCAGCTATAGCCACCATTCTCACAACATCACCACCTTCCATAGCAGCAGAATCATCTCCTTACAATCTCTACTACGGTACAGCAGCAAGTGCAGCAAACTACGGCGGCTACGGCGGAAACTCCAACAAGAAAGACTCAGCAGAATACATCTACGACGTTCCAGAAGGTTGGAAGGAACGTTTAATATCAAAAGTTGAAAAAGGTACAAATGGAACAGACAGTGAGTTCTACAATCCAAAGAAGAGAACAGAGAAAGAATATTTAACTTTCCTTTCTGGGTTTCGTCAGTTAGCACCAAAAGATGCTGTTTTGAACAACTTAGCACTTTCTGATGTGAATTTGCAAGATATTATTAGTGGTGCTGATAATGTGAGTTCTGAAGAAGTGAAAGATGATAAAGGTCAAGTTTATTATGTTTATGAGATTGATGGTGTTGCTTATCATAGCTTGATTTCTGTTACTTGTGCTAATAATAAGCTTTATGCTCATTTTGTTAATGCTCCTACTCCTGAGTGGAATAAAGATAAGGATCTTCTCACTCATGTTCATAAGTCTTTTAAGACTATTGTATAA

Protein sequence

>MS.gene46798.t1

MATIFSSSPPPIFSSSAATTTTTTTSTTTTISKPLISFKHKQPLITTTLTAAAAAIATILTTSPPSIAAESSPYNLYYGTAASAANYGGYGGNSNKKDSAEYIYDVPEGWKERLISKVEKGTNGTDSEFYNPKKRTEKEYLTFLSGFRQLAPKDAVLNNLALSDVNLQDIISGADNVSSEEVKDDKGQVYYVYEIDGVAYHSLISVTCANNKLYAHFVNAPTPEWNKDKDLLTHVHKSFKTIV