AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016135.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016135.01.T01 MTR_3g084170 97.826 92 2 0 98 189 1 92 5.04e-63 190
MsG0380016135.01.T01 MTR_3g084240 96.739 92 3 0 98 189 1 92 8.59e-62 187
MsG0380016135.01.T01 MTR_3g084220 93.478 92 6 0 98 189 1 92 1.16e-59 181
MsG0380016135.01.T01 MTR_3g110038 91.304 92 8 0 98 189 1 92 1.12e-57 176
MsG0380016135.01.T01 MTR_4g050700 88.172 93 10 1 98 189 1 93 3.36e-56 172
MsG0380016135.01.T01 MTR_2g012410 88.172 93 10 1 98 189 1 93 3.36e-56 172
MsG0380016135.01.T01 MTR_3g084150 88.172 93 9 2 98 189 1 92 6.75e-55 169
MsG0380016135.01.T01 MTR_3g084180 87.097 93 10 2 98 189 1 92 8.07e-54 166
MsG0380016135.01.T01 MTR_8g461410 84.946 93 12 2 98 189 1 92 2.28e-53 165
MsG0380016135.01.T01 MTR_3g110032 84.946 93 13 1 98 189 1 93 1.63e-51 160
MsG0380016135.01.T01 MTR_3g084260 81.720 93 16 1 98 189 1 93 1.01e-49 156
MsG0380016135.01.T01 MTR_3g110042 85.227 88 11 2 98 184 1 87 3.88e-49 155
MsG0380016135.01.T01 MTR_4g072270 75.269 93 22 1 98 189 1 93 1.69e-48 153
MsG0380016135.01.T01 MTR_4g072880 75.269 93 22 1 98 189 1 93 9.78e-48 151
MsG0380016135.01.T01 MTR_4g072310 75.269 93 22 1 98 189 1 93 5.49e-47 149
MsG0380016135.01.T01 MTR_4g072250 76.344 93 20 2 98 189 1 92 1.52e-46 148
MsG0380016135.01.T01 MTR_3g084200 95.833 72 3 0 98 169 1 72 2.97e-46 147
MsG0380016135.01.T01 MTR_4g072500 75.269 93 21 2 98 189 1 92 6.08e-46 146
MsG0380016135.01.T01 MTR_4g072860 73.118 93 24 1 98 189 1 93 1.17e-45 146
MsG0380016135.01.T01 MTR_3g117630 78.889 90 18 1 101 189 3 92 2.35e-45 145
MsG0380016135.01.T01 MTR_4g072480 70.652 92 27 0 98 189 1 92 4.48e-45 144
MsG0380016135.01.T01 MTR_4g072230 76.344 93 19 2 98 189 1 91 6.95e-45 144
MsG0380016135.01.T01 MTR_4g072620 69.565 92 28 0 98 189 1 92 2.41e-44 142
MsG0380016135.01.T01 MTR_4g072870 71.429 91 25 1 98 187 1 91 4.30e-44 142
MsG0380016135.01.T01 MTR_4g072640 75.824 91 20 2 98 187 1 90 1.07e-43 140
MsG0380016135.01.T01 MTR_4g072740 74.444 90 18 1 98 187 1 85 1.08e-43 140
MsG0380016135.01.T01 MTR_4g072370 74.444 90 21 1 98 187 1 88 1.27e-43 140
MsG0380016135.01.T01 MTR_4g072730 69.231 91 28 0 98 188 1 91 1.75e-43 140
MsG0380016135.01.T01 MTR_4g072530 73.626 91 22 2 98 187 1 90 1.97e-43 140
MsG0380016135.01.T01 MTR_4g072490 72.222 90 20 1 98 187 1 85 3.30e-43 139
MsG0380016135.01.T01 MTR_4g072470 73.333 90 19 1 98 187 1 85 5.51e-43 139
MsG0380016135.01.T01 MTR_4g072240 70.330 91 26 1 98 187 1 91 9.33e-43 138
MsG0380016135.01.T01 MTR_4g072680 68.478 92 29 0 98 189 1 92 1.05e-42 138
MsG0380016135.01.T01 MTR_4g072330 73.333 90 22 1 98 187 1 88 1.22e-42 138
MsG0380016135.01.T01 MTR_4g072300 70.330 91 26 1 98 187 1 91 2.60e-42 137
MsG0380016135.01.T01 MTR_4g072830 75.862 87 19 1 98 184 1 85 4.36e-42 137
MsG0380016135.01.T01 MTR_4g072580 73.563 87 18 1 98 184 1 82 5.12e-42 136
MsG0380016135.01.T01 MTR_4g072890 70.330 91 26 1 98 187 1 91 5.17e-42 136
MsG0380016135.01.T01 MTR_4g072260 68.817 93 28 1 98 189 1 93 5.92e-42 136
MsG0380016135.01.T01 MTR_4g072220 69.892 93 27 1 98 189 1 93 6.61e-42 136
MsG0380016135.01.T01 MTR_4g072630 71.111 90 22 1 98 187 1 86 1.11e-41 135
MsG0380016135.01.T01 MTR_3g084250 70.968 93 25 2 98 189 1 92 2.40e-41 135
MsG0380016135.01.T01 MTR_4g072660 68.478 92 24 1 98 189 1 87 2.90e-41 134
MsG0380016135.01.T01 MTR_4g072465 71.111 90 22 1 98 187 1 86 3.11e-41 134
MsG0380016135.01.T01 MTR_4g072460 66.304 92 31 0 98 189 1 92 6.06e-41 134
MsG0380016135.01.T01 MTR_4g072570 68.478 92 29 0 98 189 1 92 8.49e-41 133
MsG0380016135.01.T01 MTR_4g072380 72.527 91 19 2 98 187 1 86 1.44e-40 133
MsG0380016135.01.T01 MTR_4g072610 74.713 87 16 2 98 184 1 81 2.09e-40 132
MsG0380016135.01.T01 MTR_4g072850 71.277 94 25 1 98 189 1 94 4.62e-40 132
MsG0380016135.01.T01 MTR_4g072600 68.889 90 23 1 98 187 1 85 8.60e-40 130
MsG0380016135.01.T01 MTR_3g084210 67.391 92 30 0 98 189 1 92 8.75e-40 131
MsG0380016135.01.T01 MTR_4g072650 74.713 87 16 2 98 184 1 81 1.43e-39 130
MsG0380016135.01.T01 MTR_4g072540 71.111 90 22 1 98 187 1 86 4.78e-39 129
MsG0380016135.01.T01 MTR_4g072590 71.111 90 21 1 98 187 1 85 5.96e-39 129
MsG0380016135.01.T01 MTR_4g072510 70.000 90 23 1 98 187 1 86 2.06e-38 127
MsG0380016135.01.T01 MTR_4g072670 70.000 90 23 1 98 187 1 86 2.82e-38 127
MsG0380016135.01.T01 MTR_4g072720 71.111 90 22 1 98 187 1 86 3.74e-38 126
MsG0380016135.01.T01 MTR_3g084190 65.217 92 32 0 98 189 1 92 4.18e-38 127
MsG0380016135.01.T01 MTR_5g008370 68.132 91 29 0 98 188 1 91 6.73e-38 127
MsG0380016135.01.T01 MTR_8g461420 65.556 90 31 0 98 187 1 90 1.33e-37 125
MsG0380016135.01.T01 MTR_3g084230 65.556 90 31 0 98 187 1 90 4.03e-37 124
MsG0380016135.01.T01 MTR_4g072820 71.591 88 18 3 98 184 1 82 4.39e-37 124
MsG0380016135.01.T01 MTR_3g084160 64.130 92 33 0 98 189 1 92 1.21e-36 123
MsG0380016135.01.T01 MTR_5g008360 77.027 74 17 0 116 189 10 83 1.35e-36 122
MsG0380016135.01.T01 MTR_3g110045 64.583 96 34 0 94 189 56 151 7.78e-36 123
MsG0380016135.01.T01 MTR_8g461400 67.391 92 4 1 98 189 1 66 3.24e-35 118
MsG0380016135.01.T01 MTR_5g008350 68.354 79 20 1 98 176 1 74 5.23e-35 118
MsG0380016135.01.T01 MTR_4g072690 68.889 90 23 1 98 187 1 85 6.30e-35 118
MsG0380016135.01.T01 MTR_4g072940 68.478 92 27 1 100 189 33 124 9.56e-35 119
MsG0380016135.01.T01 MTR_4g072450 67.778 90 24 1 98 187 1 85 1.81e-34 117
MsG0380016135.01.T01 MTR_4g072550 61.957 92 32 1 101 189 12 103 2.60e-34 117
MsG0380016135.01.T01 MTR_4g072980 61.111 90 32 2 98 184 1 90 6.72e-33 113
MsG0380016135.01.T01 MTR_4g072770 77.778 63 14 0 122 184 15 77 3.98e-30 106
MsG0380016135.01.T01 MTR_4g072560 54.737 95 35 3 98 184 1 95 5.72e-30 106
MsG0380016135.01.T01 MTR_4g072290 60.215 93 22 2 98 189 1 79 7.22e-30 105
MsG0380016135.01.T01 MTR_4g072910 67.164 67 22 0 121 187 34 100 9.91e-29 103
MsG0380016135.01.T01 MTR_3g117640 52.577 97 36 2 98 184 1 97 1.24e-28 103
MsG0380016135.01.T01 MTR_4g072280 64.000 75 26 1 98 171 1 75 3.55e-26 96.3
MsG0380016135.01.T01 MTR_4g072750 66.216 74 21 2 98 168 1 73 2.15e-25 94.4
MsG0380016135.01.T01 MTR_3g110035 66.667 66 22 0 124 189 73 138 2.25e-25 95.9
MsG0380016135.01.T01 MTR_3g113310 60.000 65 25 1 120 184 40 103 2.33e-23 89.7
MsG0380016135.01.T01 MTR_3g117610 61.538 65 24 1 120 184 43 106 2.45e-22 87.0
MsG0380016135.01.T01 MTR_6g077850 55.224 67 30 0 121 187 33 99 5.72e-22 85.9
MsG0380016135.01.T01 MTR_4g072190 50.602 83 39 2 102 184 17 97 8.34e-22 85.5
MsG0380016135.01.T01 MTR_4g072930 53.086 81 32 2 113 187 30 110 1.07e-21 85.5
MsG0380016135.01.T01 MTR_2g043960 53.731 67 30 1 121 187 75 140 2.25e-19 80.9
MsG0380016135.01.T01 MTR_4g124750 48.780 82 36 2 110 186 52 132 5.22e-19 79.7
MsG0380016135.01.T01 MTR_4g072840 52.874 87 11 4 98 184 1 57 8.20e-19 76.6
MsG0380016135.01.T01 MTR_8g076040 50.704 71 34 1 114 184 33 102 2.07e-18 77.0
MsG0380016135.01.T01 MTR_5g021820 54.688 64 28 1 121 184 39 101 3.92e-18 76.3
MsG0380016135.01.T01 MTR_1g094750 46.000 100 48 3 87 182 12 109 2.25e-17 74.3
MsG0380016135.01.T01 MTR_1g009150 58.065 62 25 1 121 182 70 130 1.39e-16 73.9
MsG0380016135.01.T01 MTR_4g005310 45.679 81 42 2 108 186 48 128 1.97e-16 73.2
MsG0380016135.01.T01 MTR_3g109160 48.193 83 41 2 107 188 53 134 1.19e-14 68.9
MsG0380016135.01.T01 MTR_4g005320 52.459 61 28 1 122 182 70 129 1.96e-14 68.2
MsG0380016135.01.T01 MTR_1g024085 45.783 83 39 3 101 179 13 93 6.34e-14 66.2
MsG0380016135.01.T01 MTR_4g072160 52.308 65 28 2 119 182 34 96 7.16e-14 65.9
MsG0380016135.01.T01 MTR_8g461210 52.542 59 27 1 121 179 34 91 1.07e-13 65.1
MsG0380016135.01.T01 MTR_0388s0020 42.857 70 36 2 108 174 61 129 2.13e-13 65.1
MsG0380016135.01.T01 MTR_7g118010 46.377 69 34 2 121 187 22 89 2.56e-13 63.5
MsG0380016135.01.T01 MTR_3g105900 80.556 36 7 0 121 156 1171 1206 5.09e-13 67.0
MsG0380016135.01.T01 MTR_3g092220 44.928 69 35 2 113 179 24 91 5.83e-13 62.8
MsG0380016135.01.T01 MTR_1g061570 47.059 68 35 1 121 188 18 84 1.23e-12 62.4
MsG0380016135.01.T01 MTR_1g063950 39.759 83 47 2 105 185 29 110 1.54e-12 62.0
MsG0380016135.01.T01 MTR_3g098970 35.000 80 51 1 110 189 41 119 2.82e-12 62.0
MsG0380016135.01.T01 MTR_7g405740 49.180 61 30 1 122 182 67 126 2.89e-12 62.4
MsG0380016135.01.T01 MTR_7g101740 48.438 64 32 1 121 184 39 101 3.34e-12 60.8
MsG0380016135.01.T01 MTR_8g026730 42.029 69 37 2 121 187 26 93 4.84e-12 60.5
MsG0380016135.01.T01 MTR_4g021810 45.570 79 39 3 102 179 8 83 9.37e-12 59.3
MsG0380016135.01.T01 MTR_3g097120 43.421 76 34 2 115 182 2 76 1.46e-11 58.9
MsG0380016135.01.T01 MTR_1g059770 38.095 84 42 3 108 188 41 117 5.15e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016135.01.T01 AT4G38840 73.529 68 17 1 121 187 32 99 1.22e-33 115
MsG0380016135.01.T01 AT5G18020 65.789 76 25 1 113 187 15 90 1.65e-31 110
MsG0380016135.01.T01 AT2G21200 70.000 70 20 1 116 184 15 84 1.81e-30 107
MsG0380016135.01.T01 AT5G18080 65.753 73 24 1 113 184 15 87 2.52e-30 107
MsG0380016135.01.T01 AT5G18060 65.753 73 23 2 114 184 15 87 6.27e-30 105
MsG0380016135.01.T01 AT4G38825 68.116 69 21 1 117 184 18 86 1.25e-29 105
MsG0380016135.01.T01 AT5G18050 64.384 73 25 1 113 184 15 87 1.46e-29 105
MsG0380016135.01.T01 AT5G18030 68.116 69 21 1 117 184 17 85 1.89e-29 104
MsG0380016135.01.T01 AT4G34770 66.667 75 23 1 116 188 29 103 4.18e-29 104
MsG0380016135.01.T01 AT5G18010 63.014 73 26 1 113 184 15 87 2.58e-28 102
MsG0380016135.01.T01 AT2G21210 60.000 75 28 1 112 184 18 92 2.94e-28 102
MsG0380016135.01.T01 AT2G21210 60.000 75 28 1 112 184 85 159 1.44e-27 102
MsG0380016135.01.T01 AT3G03820 55.682 88 36 1 104 188 9 96 2.58e-27 99.8
MsG0380016135.01.T01 AT4G34800 54.545 88 35 2 105 187 2 89 3.09e-27 99.4
MsG0380016135.01.T01 AT3G03840 61.644 73 26 1 118 188 23 95 5.29e-27 98.6
MsG0380016135.01.T01 AT3G03850 64.474 76 23 2 115 188 20 93 1.03e-26 97.8
MsG0380016135.01.T01 AT4G38850 58.537 82 22 2 106 184 14 86 1.22e-26 97.4
MsG0380016135.01.T01 AT4G34810 63.235 68 21 1 121 184 47 114 1.51e-26 98.2
MsG0380016135.01.T01 AT4G13790 53.086 81 31 2 106 184 14 89 2.88e-24 91.7
MsG0380016135.01.T01 AT3G03830 61.842 76 23 2 112 184 17 89 3.70e-24 91.3
MsG0380016135.01.T01 AT1G75580 55.405 74 32 1 111 184 33 105 1.62e-22 87.8
MsG0380016135.01.T01 AT4G38860 60.000 65 26 0 120 184 38 102 1.83e-22 87.4
MsG0380016135.01.T01 AT4G34780 58.108 74 28 1 114 184 20 93 2.24e-22 87.0
MsG0380016135.01.T01 AT4G34790 61.538 65 23 1 122 184 39 103 2.26e-22 87.4
MsG0380016135.01.T01 AT4G34760 58.462 65 26 1 120 184 41 104 1.30e-20 82.8
MsG0380016135.01.T01 AT2G21220 55.385 65 28 1 120 184 38 101 6.20e-20 80.9
MsG0380016135.01.T01 AT3G43120 51.471 68 32 1 121 188 78 144 9.20e-20 82.0
MsG0380016135.01.T01 AT4G36110 54.545 66 29 1 121 186 39 103 4.26e-19 78.6
MsG0380016135.01.T01 AT5G20810 54.545 66 29 1 121 186 78 142 6.61e-19 79.7
MsG0380016135.01.T01 AT5G20810 54.545 66 29 1 121 186 78 142 1.56e-18 79.3
MsG0380016135.01.T01 AT2G16580 50.704 71 34 1 114 184 36 105 1.63e-18 77.4
MsG0380016135.01.T01 AT2G18010 53.030 66 30 1 121 186 47 111 3.48e-18 76.6
MsG0380016135.01.T01 AT1G19830 58.730 63 25 1 117 179 43 104 5.69e-18 76.3
MsG0380016135.01.T01 AT3G20220 50.685 73 33 3 112 182 36 107 1.13e-17 75.5
MsG0380016135.01.T01 AT5G10990 48.611 72 36 1 108 179 27 97 1.01e-15 71.2
MsG0380016135.01.T01 AT1G75590 54.237 59 26 1 121 179 41 98 7.08e-15 68.9
MsG0380016135.01.T01 AT5G66260 43.478 92 48 2 99 187 8 98 7.84e-15 67.4
MsG0380016135.01.T01 AT4G34750 39.744 78 46 1 107 184 22 98 1.35e-14 68.2
MsG0380016135.01.T01 AT4G34750 39.744 78 46 1 107 184 22 98 1.35e-14 68.2
MsG0380016135.01.T01 AT1G19840 46.988 83 39 2 101 179 16 97 1.38e-14 68.2
MsG0380016135.01.T01 AT4G31320 54.098 61 27 1 122 182 80 139 4.05e-14 67.8
MsG0380016135.01.T01 AT2G24400 55.738 61 26 1 122 182 64 123 1.28e-13 66.2
MsG0380016135.01.T01 AT2G37030 47.692 65 33 1 121 185 48 111 1.51e-13 64.7
MsG0380016135.01.T01 AT2G46690 39.744 78 43 2 114 188 16 92 3.48e-13 63.5
MsG0380016135.01.T01 AT3G51200 47.761 67 33 2 115 180 32 97 3.53e-13 63.2
MsG0380016135.01.T01 AT3G61900 44.286 70 35 2 121 187 29 97 2.08e-12 62.0
MsG0380016135.01.T01 AT3G12830 29.565 115 80 1 73 187 1 114 4.50e-12 61.2
MsG0380016135.01.T01 AT3G53250 38.667 75 42 1 111 185 41 111 1.15e-11 59.7
MsG0380016135.01.T01 AT4G00880 47.059 68 33 2 122 187 28 94 3.20e-11 58.5
MsG0380016135.01.T01 AT5G53590 40.278 72 37 2 121 187 45 115 7.17e-11 58.2
MsG0380016135.01.T01 AT2G45210 40.845 71 38 2 117 184 74 143 7.86e-11 58.5
MsG0380016135.01.T01 AT4G09530 38.028 71 41 2 112 179 18 88 8.70e-11 57.0

Find 34 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTACTTCTTGCTTCAA+TGG 0.270966 3:-79480907 MsG0380016135.01.T01:CDS
GTTCTTCAAAACATTTGAAA+TGG 0.307146 3:-79481175 MsG0380016135.01.T01:CDS
CATGGCACTTAAGGTTTAGT+TGG 0.334743 3:-79482097 MsG0380016135.01.T01:intron
GTCTAATAGCTGCAGGTAAA+CGG 0.411664 3:+79481148 None:intergenic
TTCTTCAAAACATTTGAAAT+GGG 0.419215 3:-79481174 MsG0380016135.01.T01:CDS
GTCCTTGGGGATAAGACAAC+TGG 0.422985 3:-79482025 MsG0380016135.01.T01:intron
CAAGAAAACGTCTTCTGTGC+AGG 0.425212 3:+79480930 None:intergenic
ATATTACTTCTTGCTTCAAT+GGG 0.427379 3:-79480906 MsG0380016135.01.T01:CDS
AGTCAAGCCGAGGAAGAATT+CGG 0.460318 3:-79480985 MsG0380016135.01.T01:CDS
ATCACATGGCACTGTCTTGG+AGG 0.472151 3:-79485666 None:intergenic
ATGATCACATGGCACTGTCT+TGG 0.475421 3:-79485669 None:intergenic
GTGATTTGTGATTGTTGTGA+AGG 0.494093 3:+79481249 None:intergenic
GTTTACCTGCAGCTATTAGA+CGG 0.499927 3:-79481146 MsG0380016135.01.T01:CDS
GTCATATCCGAATTCTTCCT+CGG 0.504640 3:+79480978 None:intergenic
TTTACCTGCAGCTATTAGAC+GGG 0.518841 3:-79481145 MsG0380016135.01.T01:CDS
ATTTGTGATTGTTGTGAAGG+AGG 0.519892 3:+79481252 None:intergenic
TTCGGATATGACCATCCAAT+GGG 0.545590 3:-79480967 MsG0380016135.01.T01:CDS
GGCTATCTTGCAGTGTACGT+TGG 0.552838 3:-79481075 MsG0380016135.01.T01:CDS
TACACTGCAAGATAGCCCTT+TGG 0.556003 3:+79481081 None:intergenic
GGAATTGTGAGGCCTCCCAT+TGG 0.558087 3:+79480952 None:intergenic
AAAGCATTGAATGTGCCAAA+GGG 0.566846 3:-79481096 MsG0380016135.01.T01:CDS
AAAAGCATTGAATGTGCCAA+AGG 0.573182 3:-79481097 MsG0380016135.01.T01:CDS
TTGTGAGGCCTCCCATTGGA+TGG 0.573771 3:+79480956 None:intergenic
ATTCGGATATGACCATCCAA+TGG 0.579573 3:-79480968 MsG0380016135.01.T01:CDS
AAGAAAACGTCTTCTGTGCA+GGG 0.595412 3:+79480931 None:intergenic
GAAGCCCGTCTAATAGCTGC+AGG 0.598914 3:+79481141 None:intergenic
AAACTTGTTGAGTCAAGCCG+AGG 0.626433 3:-79480995 MsG0380016135.01.T01:CDS
GCTTGGTTCAAGTATGACGT+GGG 0.632091 3:+79481027 None:intergenic
AACCAGTTGTCTTATCCCCA+AGG 0.637692 3:+79482023 None:intergenic
AGCTTGGTTCAAGTATGACG+TGG 0.646004 3:+79481026 None:intergenic
GGATATGACCATCCAATGGG+AGG 0.674999 3:-79480964 MsG0380016135.01.T01:CDS
CTTCTGTGCAGGGAATTGTG+AGG 0.685633 3:+79480941 None:intergenic
CTTGGTTCAAGTATGACGTG+GGG 0.704961 3:+79481028 None:intergenic
ACGTTGGAGAGCAAATGAAG+CGG 0.725765 3:-79481059 MsG0380016135.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGATCATAATTCATA+AGG - Chr3:79481315-79481334 MsG0380016135.01.T01:intron 15.0%
!! ATAAATGCTATATTACTATT+GGG - Chr3:79483070-79483089 MsG0380016135.01.T01:intron 15.0%
!! ATATGAATGATAACATATAT+AGG + Chr3:79483936-79483955 None:intergenic 15.0%
!! TATAAATGCTATATTACTAT+TGG - Chr3:79483069-79483088 MsG0380016135.01.T01:intron 15.0%
!! TATTTATATGCTATAAAACT+TGG - Chr3:79482695-79482714 MsG0380016135.01.T01:intron 15.0%
!! TCTTCAAAAAATATTGAAAT+GGG - Chr3:79482171-79482190 MsG0380016135.01.T01:intron 15.0%
!! TTATTATAATGATGACATAA+GGG - Chr3:79482777-79482796 MsG0380016135.01.T01:intron 15.0%
!! TTCTTCAAAAAATATTGAAA+TGG - Chr3:79482170-79482189 MsG0380016135.01.T01:intron 15.0%
!! TTTATTATAATGATGACATA+AGG - Chr3:79482776-79482795 MsG0380016135.01.T01:intron 15.0%
!!! TATTTTTATCATAATTCGTT+AGG - Chr3:79485010-79485029 MsG0380016135.01.T01:intron 15.0%
!!! TTTGTTATTTCTTGATAATA+AGG + Chr3:79481447-79481466 None:intergenic 15.0%
!! AAACAATATCTAAATTTCCT+TGG - Chr3:79482753-79482772 MsG0380016135.01.T01:intron 20.0%
!! AATATTTCTCATAATTCTTC+AGG - Chr3:79481793-79481812 MsG0380016135.01.T01:intron 20.0%
!! AATCTTATTCATAATTCATG+AGG - Chr3:79481257-79481276 MsG0380016135.01.T01:CDS 20.0%
!! TAAGAAACAAAAACAAGAAT+GGG + Chr3:79484260-79484279 None:intergenic 20.0%
!! TCTTGGAAACTATAAATATA+GGG - Chr3:79482068-79482087 MsG0380016135.01.T01:CDS 20.0%
!! TTAAGAAACAAAAACAAGAA+TGG + Chr3:79484261-79484280 None:intergenic 20.0%
!!! ATCATAATTCATAAGGTATT+TGG - Chr3:79481322-79481341 MsG0380016135.01.T01:intron 20.0%
!!! GTTTTGATATCAGAAATTTT+TGG - Chr3:79481549-79481568 MsG0380016135.01.T01:intron 20.0%
!!! TATCTTAACATACTCTATTT+TGG - Chr3:79483381-79483400 MsG0380016135.01.T01:intron 20.0%
!!! TTCTTCAAAACATTTGAAAT+GGG - Chr3:79485387-79485406 MsG0380016135.01.T01:intron 20.0%
!!! TTCTTGATTTAGTTTTTGAA+GGG + Chr3:79484949-79484968 None:intergenic 20.0%
!!! TTTAAATACTGTCACTTATA+TGG + Chr3:79484667-79484686 None:intergenic 20.0%
! AACTTATTGATCCTTAATAC+TGG - Chr3:79485176-79485195 MsG0380016135.01.T01:intron 25.0%
! AACTTATTGATCCTTAATAG+TGG - Chr3:79481959-79481978 MsG0380016135.01.T01:intron 25.0%
! AATCAACCATGAAATATACT+AGG - Chr3:79481039-79481058 MsG0380016135.01.T01:CDS 25.0%
! AATCAACCATGAAATATACT+TGG - Chr3:79481039-79481058 MsG0380016135.01.T01:CDS 25.0%
! AGAAATGATTGTTAAAAGGA+CGG + Chr3:79482025-79482044 None:intergenic 25.0%
! AGCTTATCAACTATATAGTT+TGG + Chr3:79482865-79482884 None:intergenic 25.0%
! ATATACTCTCTTATGATTAG+TGG - Chr3:79483430-79483449 MsG0380016135.01.T01:intron 25.0%
! ATATTACTTCTTGCTTCAAT+GGG - Chr3:79485655-79485674 MsG0380016135.01.T01:CDS 25.0%
! ATCTTTACAACTCTAAATGA+TGG + Chr3:79482524-79482543 None:intergenic 25.0%
! CAATTGTGCATATTTAGTTA+TGG + Chr3:79481752-79481771 None:intergenic 25.0%
! CTAGAGAAATGATTGTTAAA+AGG + Chr3:79482029-79482048 None:intergenic 25.0%
! CTCTTGGAAACTATAAATAT+AGG - Chr3:79482067-79482086 MsG0380016135.01.T01:CDS 25.0%
! GATAATAAGGAGATAGAAAT+GGG + Chr3:79481434-79481453 None:intergenic 25.0%
! GTCATCATTATAATAAACCA+AGG + Chr3:79482773-79482792 None:intergenic 25.0%
! GTTCTTCAAAACATTTGAAA+TGG - Chr3:79485386-79485405 MsG0380016135.01.T01:intron 25.0%
! TCTTTAAACAAAGGTTTGTA+CGG - Chr3:79483705-79483724 MsG0380016135.01.T01:intron 25.0%
! TGATAATAAGGAGATAGAAA+TGG + Chr3:79481435-79481454 None:intergenic 25.0%
! TGGTTTATCTGATCAATTAT+TGG - Chr3:79483627-79483646 MsG0380016135.01.T01:intron 25.0%
! TTTCATATTCCTTCAATCAA+AGG + Chr3:79483411-79483430 None:intergenic 25.0%
!! ATAAAACTTGGTGATTTCTT+GGG - Chr3:79482707-79482726 MsG0380016135.01.T01:intron 25.0%
!! ATAACAAGTATTTTGTCCTT+GGG - Chr3:79480981-79481000 MsG0380016135.01.T01:CDS 25.0%
!! ATTCTTTTGCATATATTACG+AGG + Chr3:79483731-79483750 None:intergenic 25.0%
!! ATTTAAGATTTCCACTTAAG+AGG - Chr3:79483843-79483862 MsG0380016135.01.T01:intron 25.0%
!! GATTTTATCTTTATTCAACG+TGG + Chr3:79483109-79483128 None:intergenic 25.0%
!! GCATATAAATAGAAGCATAT+AGG + Chr3:79482686-79482705 None:intergenic 25.0%
!! GTCTGCTAAATTAATTTTGT+AGG - Chr3:79481517-79481536 MsG0380016135.01.T01:CDS 25.0%
!! TAATTCATAAGGTATTTGGT+AGG - Chr3:79481326-79481345 MsG0380016135.01.T01:intron 25.0%
!! TATAAAACTTGGTGATTTCT+TGG - Chr3:79482706-79482725 MsG0380016135.01.T01:intron 25.0%
!!! ATATAGTTGATAAGCTATCT+TGG - Chr3:79482869-79482888 MsG0380016135.01.T01:intron 25.0%
!!! GTTCTTGATTTAGTTTTTGA+AGG + Chr3:79484950-79484969 None:intergenic 25.0%
!!! TGTAGAATCAGTTTTGTATT+GGG - Chr3:79484808-79484827 MsG0380016135.01.T01:intron 25.0%
!!! TTGTAGAATCAGTTTTGTAT+TGG - Chr3:79484807-79484826 MsG0380016135.01.T01:intron 25.0%
!!! TTTTACAAAATCGACTTGTA+AGG + Chr3:79483164-79483183 None:intergenic 25.0%
AAAAGTGAATCGAACCAATT+AGG - Chr3:79481349-79481368 MsG0380016135.01.T01:intron 30.0%
AAACCTGTCTTTCAACTATA+AGG + Chr3:79483685-79483704 None:intergenic 30.0%
AAATGATTGTTAAAAGGACG+GGG + Chr3:79482023-79482042 None:intergenic 30.0%
AACAATCATTTCTCTAGCAA+AGG - Chr3:79482032-79482051 MsG0380016135.01.T01:CDS 30.0%
AAGGGATTTCAAAAAACTCT+TGG - Chr3:79482051-79482070 MsG0380016135.01.T01:CDS 30.0%
AATACATTCAACAACCCAAT+GGG - Chr3:79482658-79482677 MsG0380016135.01.T01:intron 30.0%
AATATCCATTCATTTCAGAC+AGG + Chr3:79485095-79485114 None:intergenic 30.0%
ACAATCATTTCTCTAGCAAA+GGG - Chr3:79482033-79482052 MsG0380016135.01.T01:CDS 30.0%
ACAATTCTAATCCATTCCAA+AGG + Chr3:79482564-79482583 None:intergenic 30.0%
AGAAATGATTGTTCAAAGGA+CGG + Chr3:79485242-79485261 None:intergenic 30.0%
ATATTACTTCTCGCTTCAAT+GGG - Chr3:79482439-79482458 MsG0380016135.01.T01:intron 30.0%
ATGGTGAATGAGTTATTCAA+TGG - Chr3:79484408-79484427 MsG0380016135.01.T01:intron 30.0%
ATTTAGTTATGGTCCTTGAA+GGG + Chr3:79481741-79481760 None:intergenic 30.0%
ATTTCTGATATCAAAACTGC+AGG + Chr3:79481546-79481565 None:intergenic 30.0%
ATTTGGTTATTGTCATCCAA+TGG + Chr3:79484054-79484073 None:intergenic 30.0%
CACTCTTTACAAACTCTAAT+CGG + Chr3:79483131-79483150 None:intergenic 30.0%
CATATTACTTCTTGCTTCAA+TGG - Chr3:79485654-79485673 MsG0380016135.01.T01:CDS 30.0%
CATTCAATACTTTGGATGTT+TGG + Chr3:79482242-79482261 None:intergenic 30.0%
CTAAGAACTACCAAGTTAAT+TGG + Chr3:79484743-79484762 None:intergenic 30.0%
CTAGAGAAATGATTGTTCAA+AGG + Chr3:79485246-79485265 None:intergenic 30.0%
GAAATGATTGTTAAAAGGAC+GGG + Chr3:79482024-79482043 None:intergenic 30.0%
GAATGAATTTGTCATTCAGA+TGG + Chr3:79482587-79482606 None:intergenic 30.0%
GACTTAAGAAACCAATTGTA+TGG - Chr3:79484389-79484408 MsG0380016135.01.T01:intron 30.0%
GATAACATATATAGGACCAT+AGG + Chr3:79483928-79483947 None:intergenic 30.0%
GATGATGATCTTCTAATAAC+AGG - Chr3:79484224-79484243 MsG0380016135.01.T01:intron 30.0%
GGCTATAAATCTTACACTAA+AGG - Chr3:79482460-79482479 MsG0380016135.01.T01:intron 30.0%
GTATCTAAGTTTGATTGCTT+CGG + Chr3:79482120-79482139 None:intergenic 30.0%
GTCAATCTTGAATAATGACT+TGG - Chr3:79481468-79481487 MsG0380016135.01.T01:intron 30.0%
GTCTTTCTCAAAGATTAAAG+TGG + Chr3:79484861-79484880 None:intergenic 30.0%
TAACTCATTCACCATACAAT+TGG + Chr3:79484403-79484422 None:intergenic 30.0%
TATCCTTATAGTTGAAAGAC+AGG - Chr3:79483679-79483698 MsG0380016135.01.T01:intron 30.0%
TATTTAGTTATGGTCCTTGA+AGG + Chr3:79481742-79481761 None:intergenic 30.0%
TCTGAATGACAAATTCATTC+AGG - Chr3:79482587-79482606 MsG0380016135.01.T01:intron 30.0%
TGATAGGAAATCAGAGAAAA+GGG - Chr3:79483458-79483477 MsG0380016135.01.T01:intron 30.0%
TGCTCATTCAAGAATGATAT+TGG - Chr3:79484110-79484129 MsG0380016135.01.T01:intron 30.0%
TGGTGAATGAGTTATTCAAT+GGG - Chr3:79484409-79484428 MsG0380016135.01.T01:intron 30.0%
TTTGGTTATTGTCATCCAAT+GGG + Chr3:79484053-79484072 None:intergenic 30.0%
! CATAACAAGTATTTTGTCCT+TGG - Chr3:79480980-79480999 MsG0380016135.01.T01:CDS 30.0%
! CATTCAATGCTTTTGATGTT+TGG + Chr3:79485458-79485477 None:intergenic 30.0%
! CTTGAGTTCTGATTTCTTTA+AGG - Chr3:79484320-79484339 MsG0380016135.01.T01:intron 30.0%
! GACAGGTTTTCTTTAAACAA+AGG - Chr3:79483696-79483715 MsG0380016135.01.T01:intron 30.0%
! TAACAAGTATTTTGTCCTTG+GGG - Chr3:79480982-79481001 MsG0380016135.01.T01:CDS 30.0%
! TTGTTTCATTTTCCTACCTT+TGG - Chr3:79482545-79482564 MsG0380016135.01.T01:intron 30.0%
! TTTGGTAATCCTTTGATTGA+AGG - Chr3:79483399-79483418 MsG0380016135.01.T01:intron 30.0%
! TTTTGATGTTTCCTCTTAAG+TGG + Chr3:79483857-79483876 None:intergenic 30.0%
!! AAAGTATTGAATGTGCCAAA+GGG - Chr3:79482249-79482268 MsG0380016135.01.T01:intron 30.0%
!! AAGTTGATGATTGAATCTCA+CGG + Chr3:79483006-79483025 None:intergenic 30.0%
!! TAACTACTGCTTTTACATCT+AGG - Chr3:79482928-79482947 MsG0380016135.01.T01:intron 30.0%
!!! ACAAGTTTTGAAATGAAGCT+TGG + Chr3:79482338-79482357 None:intergenic 30.0%
AAATGATTGTTCAAAGGACG+GGG + Chr3:79485240-79485259 None:intergenic 35.0%
AACCCTATCTTCAGAATGAA+AGG + Chr3:79485143-79485162 None:intergenic 35.0%
AAGAGTGAAAACACGAAACA+CGG + Chr3:79481139-79481158 None:intergenic 35.0%
AAGGGATTTCAAGAAACTCT+TGG - Chr3:79485268-79485287 MsG0380016135.01.T01:intron 35.0%
AGCTGTTGCAAGTATGTATA+TGG - Chr3:79481063-79481082 MsG0380016135.01.T01:CDS 35.0%
AGTCTATATATACCCCTCAT+TGG + Chr3:79484373-79484392 None:intergenic 35.0%
ATGGCTCATTAATGATCACA+TGG - Chr3:79484446-79484465 MsG0380016135.01.T01:intron 35.0%
ATGTTGGAGAGAAAATGAGA+AGG + Chr3:79484145-79484164 None:intergenic 35.0%
ATTACCAATTGCACTTGTGT+TGG - Chr3:79483213-79483232 MsG0380016135.01.T01:intron 35.0%
ATTAGGTCAGAGAAATTTGC+AGG + Chr3:79482831-79482850 None:intergenic 35.0%
ATTTACCTGCAGCTATTAGA+CGG - Chr3:79482199-79482218 MsG0380016135.01.T01:intron 35.0%
ATTTGTGATTGTTGTGAAGG+AGG + Chr3:79482095-79482114 None:intergenic 35.0%
CAGCTTCCAAGTATATTTCA+TGG + Chr3:79484590-79484609 None:intergenic 35.0%
CAGCTTCCTAGTATATTTCA+TGG + Chr3:79481048-79481067 None:intergenic 35.0%
CATACCTCAAACTAACAGTA+TGG - Chr3:79481408-79481427 MsG0380016135.01.T01:intron 35.0%
CATATTACTTCTCGCTTCAA+TGG - Chr3:79482438-79482457 MsG0380016135.01.T01:intron 35.0%
CATGCAACTCACAGATTAAT+TGG - Chr3:79483594-79483613 MsG0380016135.01.T01:intron 35.0%
CATGTGATCTCTTATCTCAT+GGG - Chr3:79481997-79482016 MsG0380016135.01.T01:intron 35.0%
CTGATAGGAAATCAGAGAAA+AGG - Chr3:79483457-79483476 MsG0380016135.01.T01:intron 35.0%
CTGGTCGTTACAATTTACAA+AGG + Chr3:79481575-79481594 None:intergenic 35.0%
CTTGTGATGTTTGAAGAATG+TGG + Chr3:79483571-79483590 None:intergenic 35.0%
CTTTGGCACATTCAATACTT+TGG + Chr3:79482250-79482269 None:intergenic 35.0%
GAAAATTCGAAACATGTTGC+AGG + Chr3:79484638-79484657 None:intergenic 35.0%
GAAATGATTGTTCAAAGGAC+GGG + Chr3:79485241-79485260 None:intergenic 35.0%
GAATACATTCAACAACCCAA+TGG - Chr3:79482657-79482676 MsG0380016135.01.T01:intron 35.0%
GGTGAATGAGTTATTCAATG+GGG - Chr3:79484410-79484429 MsG0380016135.01.T01:intron 35.0%
GTTATTCAATGGGGTTTAGT+TGG - Chr3:79484419-79484438 MsG0380016135.01.T01:intron 35.0%
GTTGCTTGTAAATCCAATGA+GGG - Chr3:79484357-79484376 MsG0380016135.01.T01:intron 35.0%
TAACAACTACCAAGCTAGTT+GGG + Chr3:79481237-79481256 None:intergenic 35.0%
TAAGTTGTGTTATCAATGCG+AGG - Chr3:79481830-79481849 MsG0380016135.01.T01:intron 35.0%
TAATGATCACATGGCACTTA+AGG - Chr3:79484455-79484474 MsG0380016135.01.T01:intron 35.0%
TCAATCATCTAGCAAACAAG+TGG + Chr3:79484195-79484214 None:intergenic 35.0%
TGCAAAAGAATTACCAGTCT+TGG - Chr3:79483740-79483759 MsG0380016135.01.T01:intron 35.0%
TGTCTTAGATGCCACTATTA+AGG + Chr3:79481973-79481992 None:intergenic 35.0%
TTAACAACTACCAAGCTAGT+TGG + Chr3:79481238-79481257 None:intergenic 35.0%
TTCTAATCCATTCCAAAGGT+AGG + Chr3:79482560-79482579 None:intergenic 35.0%
TTGCTTGTAAATCCAATGAG+GGG - Chr3:79484358-79484377 MsG0380016135.01.T01:intron 35.0%
TTTAAATTCTGCTAGATCCG+TGG + Chr3:79481162-79481181 None:intergenic 35.0%
TTTCAGAAATGCATCAGACA+TGG + Chr3:79481866-79481885 None:intergenic 35.0%
! AACAGAAAGTACGTCATTAG+CGG + Chr3:79483487-79483506 None:intergenic 35.0%
! AAGTATTTTGTCCTTGGGAT+AGG - Chr3:79480986-79481005 MsG0380016135.01.T01:CDS 35.0%
! AGCCTTTCATTCTGAAGATA+GGG - Chr3:79485138-79485157 MsG0380016135.01.T01:intron 35.0%
! CATACTGTTAGTTTGAGGTA+TGG + Chr3:79481410-79481429 None:intergenic 35.0%
! CTTTTCTCTGATTTCCTATC+AGG + Chr3:79483459-79483478 None:intergenic 35.0%
! GATTAATTGGTGACTAACGT+TGG - Chr3:79483607-79483626 MsG0380016135.01.T01:intron 35.0%
! GTGATTTGTGATTGTTGTGA+AGG + Chr3:79482098-79482117 None:intergenic 35.0%
! GTTTGGCTGAATGTGTTATT+AGG + Chr3:79482848-79482867 None:intergenic 35.0%
! TGTCTAAGATGCCAGTATTA+AGG + Chr3:79485190-79485209 None:intergenic 35.0%
! TGTTGCTTGTAAATCCAATG+AGG - Chr3:79484356-79484375 MsG0380016135.01.T01:intron 35.0%
!! AAAAGCATTGAATGTGCCAA+AGG - Chr3:79485464-79485483 MsG0380016135.01.T01:intron 35.0%
!! AAAGCATTGAATGTGCCAAA+GGG - Chr3:79485465-79485484 MsG0380016135.01.T01:intron 35.0%
!! AGTTGATGATTGAATCTCAC+GGG + Chr3:79483005-79483024 None:intergenic 35.0%
!! CAAAGTATTGAATGTGCCAA+AGG - Chr3:79482248-79482267 MsG0380016135.01.T01:intron 35.0%
!! TCATTTTCCTACCTTTGGAA+TGG - Chr3:79482550-79482569 MsG0380016135.01.T01:intron 35.0%
AAACAAGTGGAAGTCCCAAA+AGG + Chr3:79484182-79484201 None:intergenic 40.0%
AACCAAATTCCTCTTCAGCT+TGG - Chr3:79484066-79484085 MsG0380016135.01.T01:intron 40.0%
AACGACCAGCTTTCTTAATG+TGG - Chr3:79481586-79481605 MsG0380016135.01.T01:intron 40.0%
AAGAAAACGTCTTCTGTGCA+AGG + Chr3:79482417-79482436 None:intergenic 40.0%
AAGAAAACGTCTTCTGTGCA+GGG + Chr3:79482417-79482436 None:intergenic 40.0%
AAGAATACGTCTTCCTTGCA+GGG - Chr3:79484014-79484033 MsG0380016135.01.T01:intron 40.0%
ACATTGGAGAGCAAATGAAG+CGG - Chr3:79482286-79482305 MsG0380016135.01.T01:intron 40.0%
ACGACCAGCTTTCTTAATGT+GGG - Chr3:79481587-79481606 MsG0380016135.01.T01:intron 40.0%
ACTTCACTGCGTTAAAAAGC+CGG - Chr3:79481208-79481227 MsG0380016135.01.T01:CDS 40.0%
AGCTGTTGCAAGTCTTCATA+TGG - Chr3:79484605-79484624 MsG0380016135.01.T01:intron 40.0%
AGGCAGTGTTCCAATTAACT+TGG - Chr3:79484730-79484749 MsG0380016135.01.T01:intron 40.0%
ATGATTAGTGGAAGCCTGAT+AGG - Chr3:79483442-79483461 MsG0380016135.01.T01:intron 40.0%
ATGTCCCACATTAAGAAAGC+TGG + Chr3:79481594-79481613 None:intergenic 40.0%
ATTCGGATATGACCATCCAA+TGG - Chr3:79482377-79482396 MsG0380016135.01.T01:intron 40.0%
CATACAGCTTCTCTTCTGAA+CGG + Chr3:79483993-79484012 None:intergenic 40.0%
CATGGCACTTAAGGTTTAGT+TGG - Chr3:79484464-79484483 MsG0380016135.01.T01:intron 40.0%
CATGTGATCTCTCATCTCAT+GGG - Chr3:79485214-79485233 MsG0380016135.01.T01:intron 40.0%
CCATGAGATAAGAGATCACA+TGG + Chr3:79481999-79482018 None:intergenic 40.0%
CCATGTGATCTCTTATCTCA+TGG - Chr3:79481996-79482015 MsG0380016135.01.T01:intron 40.0%
GACAATAGACAAGCAGACTA+TGG + Chr3:79484916-79484935 None:intergenic 40.0%
GATCACATGATACTGTCAAG+AGG + Chr3:79481669-79481688 None:intergenic 40.0%
GTCATATCCGAATTCTTCCT+CGG + Chr3:79482370-79482389 None:intergenic 40.0%
GTCTAATAGCTGCAGGTAAA+CGG + Chr3:79482200-79482219 None:intergenic 40.0%
GTCTAATAGCTGCAGGTAAA+TGG + Chr3:79482200-79482219 None:intergenic 40.0%
GTGATGTTTGAAGAATGTGG+TGG + Chr3:79483568-79483587 None:intergenic 40.0%
GTTTACCTGCAGCTATTAGA+CGG - Chr3:79485415-79485434 MsG0380016135.01.T01:intron 40.0%
TAAGAATACGTCTTCCTTGC+AGG - Chr3:79484013-79484032 MsG0380016135.01.T01:intron 40.0%
TCTGATATCAAAACTGCAGG+CGG + Chr3:79481543-79481562 None:intergenic 40.0%
TGTACAAAAATCGTCGCAGT+TGG - Chr3:79483897-79483916 MsG0380016135.01.T01:intron 40.0%
TTCGGATATGACCATCCAAT+GGG - Chr3:79482378-79482397 MsG0380016135.01.T01:intron 40.0%
TTGACCAACACAAGTGCAAT+TGG + Chr3:79483220-79483239 None:intergenic 40.0%
TTTACCTGCAGCTATTAGAC+GGG - Chr3:79482200-79482219 MsG0380016135.01.T01:intron 40.0%
! CTGTGTGATGGAAACCTAAT+TGG + Chr3:79481366-79481385 None:intergenic 40.0%
! GAGCCTTTCATTCTGAAGAT+AGG - Chr3:79485137-79485156 MsG0380016135.01.T01:intron 40.0%
! TGATGCCTGTCTGAAATGAA+TGG - Chr3:79485087-79485106 MsG0380016135.01.T01:intron 40.0%
! TTCGTGTTTTCACTCTTCCA+CGG - Chr3:79481142-79481161 MsG0380016135.01.T01:CDS 40.0%
!! CAAAATCGACTTGTAAGGTG+AGG + Chr3:79483159-79483178 None:intergenic 40.0%
!!! GATTTAGTTTTTGAAGGGCC+AGG + Chr3:79484944-79484963 None:intergenic 40.0%
AACCAGTTGTCTTATCCCCA+AGG + Chr3:79484541-79484560 None:intergenic 45.0%
ACAAGTCCATGTGAAGAGCA+CGG - Chr3:79483520-79483539 MsG0380016135.01.T01:intron 45.0%
ACGTTGGAGAGCAAATGAAG+CGG - Chr3:79485502-79485521 MsG0380016135.01.T01:intron 45.0%
AGCCAAGCTGAAGAGGAATT+TGG + Chr3:79484071-79484090 None:intergenic 45.0%
AGCTTGGTTCAAGTATGACG+TGG + Chr3:79482322-79482341 None:intergenic 45.0%
AGTCAAGCCGAGGAAGAATT+CGG - Chr3:79482360-79482379 MsG0380016135.01.T01:intron 45.0%
AGTGAAAACACGAAACACGG+TGG + Chr3:79481136-79481155 None:intergenic 45.0%
ATGGGGTTTAGTTGGAGACA+TGG - Chr3:79484427-79484446 MsG0380016135.01.T01:intron 45.0%
ATTGCTTAGCCAAGCTGAAG+AGG + Chr3:79484078-79484097 None:intergenic 45.0%
CAAGAAAACGTCTTCTGTGC+AGG + Chr3:79482418-79482437 None:intergenic 45.0%
CAGGCTTTCCTGCATTGAAA+AGG - Chr3:79484710-79484729 MsG0380016135.01.T01:intron 45.0%
CCATGAGATGAGAGATCACA+TGG + Chr3:79485216-79485235 None:intergenic 45.0%
CCATGTGATCTCTCATCTCA+TGG - Chr3:79485213-79485232 MsG0380016135.01.T01:intron 45.0%
CTCCAACATACACTGCAAGA+TGG - Chr3:79484156-79484175 MsG0380016135.01.T01:intron 45.0%
CTTCTGTGCAAGGAATTGTG+AGG + Chr3:79482407-79482426 None:intergenic 45.0%
CTTGCTTTCAGAGGTTAGGT+CGG + Chr3:79483038-79483057 None:intergenic 45.0%
CTTGGTTCAAGTATGACGTG+GGG + Chr3:79482320-79482339 None:intergenic 45.0%
CTTGTCTATTGTCTCCAACC+TGG - Chr3:79484923-79484942 MsG0380016135.01.T01:intron 45.0%
GAAGCATATAGGAGCCCATT+GGG + Chr3:79482675-79482694 None:intergenic 45.0%
GACAACAGACAAGCAGACTA+TGG + Chr3:79481708-79481727 None:intergenic 45.0%
GCCATACTTTGCATTCTTGC+AGG - Chr3:79484691-79484710 MsG0380016135.01.T01:intron 45.0%
GCCTGCAAGAATGCAAAGTA+TGG + Chr3:79484695-79484714 None:intergenic 45.0%
GCTTGGTTCAAGTATGACGT+GGG + Chr3:79482321-79482340 None:intergenic 45.0%
GGATGTTTGGCTACTGCTAA+AGG + Chr3:79482229-79482248 None:intergenic 45.0%
GGCTATCTTGCAGTGTACAT+TGG - Chr3:79482270-79482289 MsG0380016135.01.T01:intron 45.0%
GGTTATTGTCATCCAATGGG+TGG + Chr3:79484050-79484069 None:intergenic 45.0%
TACACTGCAAGATAGCCCTT+TGG + Chr3:79482267-79482286 None:intergenic 45.0%
TGATTGAATCTCACGGGACT+TGG + Chr3:79482999-79483018 None:intergenic 45.0%
TGTCCTTGGGATAGGAAAAC+TGG - Chr3:79480994-79481013 MsG0380016135.01.T01:CDS 45.0%
TTTCAGACAGGCATCAGACA+CGG + Chr3:79485083-79485102 None:intergenic 45.0%
! ACACTGCAAGATGGCCTTTT+GGG - Chr3:79484165-79484184 MsG0380016135.01.T01:intron 45.0%
! AGAAGCATATAGGAGCCCAT+TGG + Chr3:79482676-79482695 None:intergenic 45.0%
! CAACCAGTTTTCCTATCCCA+AGG + Chr3:79481000-79481019 None:intergenic 45.0%
! CAAGCTTGCTTTCAGAGGTT+AGG + Chr3:79483042-79483061 None:intergenic 45.0%
! CATCACAAGCTTGCTTTCAG+AGG + Chr3:79483047-79483066 None:intergenic 45.0%
! GAACACTGCCTTTTCAATGC+AGG + Chr3:79484721-79484740 None:intergenic 45.0%
! GAATTACCAGTCTTGGTGCA+TGG - Chr3:79483747-79483766 MsG0380016135.01.T01:intron 45.0%
! GGAGGTTTTCGCTTAGGATT+AGG - Chr3:79480913-79480932 MsG0380016135.01.T01:CDS 45.0%
! TACACTGCAAGATGGCCTTT+TGG - Chr3:79484164-79484183 MsG0380016135.01.T01:intron 45.0%
! TGGGCCATACTGTTAGTTTG+AGG + Chr3:79481415-79481434 None:intergenic 45.0%
! TGTCTTGGAGGTTTTCGCTT+AGG - Chr3:79480907-79480926 MsG0380016135.01.T01:CDS 45.0%
!! AAACTTGTTGAGTCAAGCCG+AGG - Chr3:79482350-79482369 MsG0380016135.01.T01:intron 45.0%
!! TAGTTTTTGAAGGGCCAGGT+TGG + Chr3:79484940-79484959 None:intergenic 45.0%
AAGAGTGAAAACCCCACCTC+TGG + Chr3:79481935-79481954 None:intergenic 50.0%
ACGGGAAGTCCTTGTGATTG+TGG - Chr3:79483539-79483558 MsG0380016135.01.T01:intron 50.0%
ACGGGACTTGGAATAGTTGG+AGG + Chr3:79482987-79483006 None:intergenic 50.0%
ACGTGAGCCTTTCATTCCAG+AGG - Chr3:79481916-79481935 MsG0380016135.01.T01:intron 50.0%
AGCCTTTCATTCCAGAGGTG+GGG - Chr3:79481921-79481940 MsG0380016135.01.T01:intron 50.0%
CTCACGGGACTTGGAATAGT+TGG + Chr3:79482990-79483009 None:intergenic 50.0%
CTTCTGTGCAGGGAATTGTG+AGG + Chr3:79485623-79485642 None:intergenic 50.0%
CTTGTCTGTTGTCTCCAACC+TGG - Chr3:79481715-79481734 MsG0380016135.01.T01:intron 50.0%
GAGCCTTTCATTCCAGAGGT+GGG - Chr3:79481920-79481939 MsG0380016135.01.T01:intron 50.0%
GGAATTGTGAGACCACCCAT+TGG - Chr3:79484035-79484054 MsG0380016135.01.T01:intron 50.0%
GGATATGACCATCCAATGGG+AGG - Chr3:79482381-79482400 MsG0380016135.01.T01:intron 50.0%
GGATATGACCATCCAATGGG+CGG - Chr3:79482381-79482400 MsG0380016135.01.T01:intron 50.0%
GGCCATCTTGCAGTGTATGT+TGG + Chr3:79484161-79484180 None:intergenic 50.0%
GGCTATCTTGCAGTGTACGT+TGG - Chr3:79485486-79485505 MsG0380016135.01.T01:intron 50.0%
GGTGTCAACCACTCATCTGT+GGG + Chr3:79481389-79481408 None:intergenic 50.0%
GTCCTTGGGGATAAGACAAC+TGG - Chr3:79484536-79484555 MsG0380016135.01.T01:intron 50.0%
GTCGCAGTTGGTCAATCCTA+TGG - Chr3:79483909-79483928 MsG0380016135.01.T01:intron 50.0%
TACCAAGCTAGTTGGGACAC+CGG + Chr3:79481230-79481249 None:intergenic 50.0%
TGAGCCTTTCATTCCAGAGG+TGG - Chr3:79481919-79481938 MsG0380016135.01.T01:intron 50.0%
TGGTCTCACAATTCCCTGCA+AGG + Chr3:79484030-79484049 None:intergenic 50.0%
TGGTGGAGACCACAATCACA+AGG + Chr3:79483551-79483570 None:intergenic 50.0%
! CAAGTCCATGTGAAGAGCAC+GGG - Chr3:79483521-79483540 MsG0380016135.01.T01:intron 50.0%
! TGGTGTCAACCACTCATCTG+TGG + Chr3:79481390-79481409 None:intergenic 50.0%
!! AACCCCACCTCTGGAATGAA+AGG + Chr3:79481926-79481945 None:intergenic 50.0%
CACAAGCCATGCACCAAGAC+TGG + Chr3:79483756-79483775 None:intergenic 55.0%
GAAGCCCGTCTAATAGCTGC+AGG + Chr3:79482207-79482226 None:intergenic 55.0%
GACTTCCCGTGCTCTTCACA+TGG + Chr3:79483529-79483548 None:intergenic 55.0%
GGAATTGTGAGGCCTCCCAT+TGG + Chr3:79485612-79485631 None:intergenic 55.0%
GTTATGGTCCTTGAAGGGCC+AGG + Chr3:79481736-79481755 None:intergenic 55.0%
TCACACAGCCCACAGATGAG+TGG - Chr3:79481378-79481397 MsG0380016135.01.T01:intron 55.0%
TTGTGAGGCCTCCCATTGGA+TGG + Chr3:79485608-79485627 None:intergenic 55.0%
! CTCATCTGTGGGCTGTGTGA+TGG + Chr3:79481378-79481397 None:intergenic 55.0%
AGCCGGTGTCCCAACTAGCT+TGG - Chr3:79481225-79481244 MsG0380016135.01.T01:CDS 60.0%
GGAATTGTGAGGCCGCCCAT+TGG + Chr3:79482396-79482415 None:intergenic 60.0%
GTCTCCAACCTGGCCCTTCA+AGG - Chr3:79481725-79481744 MsG0380016135.01.T01:intron 60.0%
TGGTCCTTGAAGGGCCAGGT+TGG + Chr3:79481732-79481751 None:intergenic 60.0%
TTGTGAGGCCGCCCATTGGA+TGG + Chr3:79482392-79482411 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79480900 79485683 79480900 ID=MsG0380016135.01;Name=MsG0380016135.01
Chr3 mRNA 79480900 79485683 79480900 ID=MsG0380016135.01.T01;Parent=MsG0380016135.01;Name=MsG0380016135.01.T01;_AED=0.49;_eAED=0.63;_QI=0|0|0|1|0|0|4|0|189
Chr3 exon 79485623 79485683 79485623 ID=MsG0380016135.01.T01:exon:10340;Parent=MsG0380016135.01.T01
Chr3 exon 79482026 79482106 79482026 ID=MsG0380016135.01.T01:exon:10339;Parent=MsG0380016135.01.T01
Chr3 exon 79481502 79481551 79481502 ID=MsG0380016135.01.T01:exon:10338;Parent=MsG0380016135.01.T01
Chr3 exon 79480900 79481277 79480900 ID=MsG0380016135.01.T01:exon:10337;Parent=MsG0380016135.01.T01
Chr3 CDS 79485623 79485683 79485623 ID=MsG0380016135.01.T01:cds;Parent=MsG0380016135.01.T01
Chr3 CDS 79482026 79482106 79482026 ID=MsG0380016135.01.T01:cds;Parent=MsG0380016135.01.T01
Chr3 CDS 79481502 79481551 79481502 ID=MsG0380016135.01.T01:cds;Parent=MsG0380016135.01.T01
Chr3 CDS 79480900 79481277 79480900 ID=MsG0380016135.01.T01:cds;Parent=MsG0380016135.01.T01
Gene Sequence

>MsG0380016135.01.T01

ATGGCACTGTCTTGGAGGTTTTCGCTTAGGATTAGGCTTGTGAAAGAGACTTGTTTCACATGTTTAGTTGGAGACTTGTTTCACATGTTTCAGACAATCTCTAAACATAACAAGTATTTTGTCCTTGGGGATAAGACAACTGGTCATTCATCAACATTAAGTTGTGTTATCAATGTGAAGAGAACATGTGCCTCTCCTCCTTCACAACAATCACAAATCACTCAAACAATCAAACTTATATACACTTATATTACATCTGAGAAATTCATCTTGTTCTTCAAAACATTTGAAATGGGTTTCCGTTTACCTGCAGCTATTAGACGGGCTTCATTCAGCAGTAGCCAAACATCAAAAGCATTGAATGTGCCAAAGGGCTATCTTGCAGTGTACGTTGGAGAGCAAATGAAGCGGTTTGTTATCCCCACGTCATACTTGAACCAAGCTTCATTTCAAAACTTGTTGAGTCAAGCCGAGGAAGAATTCGGATATGACCATCCAATGGGAGGCCTCACAATTCCCTGCACAGAAGACGTTTTCTTGCATATTACTTCTTGCTTCAATGGGCTATAA

Protein sequence

>MsG0380016135.01.T01

MALSWRFSLRIRLVKETCFTCLVGDLFHMFQTISKHNKYFVLGDKTTGHSSTLSCVINVKRTCASPPSQQSQITQTIKLIYTYITSEKFILFFKTFEMGFRLPAAIRRASFSSSQTSKALNVPKGYLAVYVGEQMKRFVIPTSYLNQASFQNLLSQAEEEFGYDHPMGGLTIPCTEDVFLHITSCFNGL*