Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353880 | XP_003599257.1 | 91.589 | 107 | 8 | 1 | 1 | 107 | 1 | 106 | 6.43e-59 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353880 | sp|P31336|PST2_GOSHI | 62.037 | 108 | 37 | 3 | 1 | 107 | 1 | 105 | 7.92e-32 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353880 | G7IWU5 | 91.589 | 107 | 8 | 1 | 1 | 107 | 1 | 106 | 3.07e-59 | 186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009210 | Msa0353880 | 0.809078 | 2.260165e-50 | -8.615850e-47 |
| Msa0012460 | Msa0353880 | 0.817957 | 2.518123e-52 | -8.615850e-47 |
| Msa0017120 | Msa0353880 | 0.808375 | 3.194407e-50 | -8.615850e-47 |
| Msa0030740 | Msa0353880 | 0.803345 | 3.644096e-49 | -8.615850e-47 |
| Msa0034320 | Msa0353880 | 0.803242 | 3.827084e-49 | -8.615850e-47 |
| Msa0034340 | Msa0353880 | 0.803315 | 3.697176e-49 | -8.615850e-47 |
| Msa0035090 | Msa0353880 | 0.820714 | 5.926454e-53 | -8.615850e-47 |
| Msa0044380 | Msa0353880 | 0.807927 | 3.980221e-50 | -8.615850e-47 |
| Msa0058970 | Msa0353880 | 0.800549 | 1.367974e-48 | -8.615850e-47 |
| Msa0065390 | Msa0353880 | 0.808484 | 3.028454e-50 | -8.615850e-47 |
| Msa0083570 | Msa0353880 | 0.812561 | 3.984045e-51 | -8.615850e-47 |
| Msa0103780 | Msa0353880 | 0.811686 | 6.184518e-51 | -8.615850e-47 |
| Msa0110710 | Msa0353880 | 0.808955 | 2.401893e-50 | -8.615850e-47 |
| Msa0126760 | Msa0353880 | 0.813651 | 2.298331e-51 | -8.615850e-47 |
| Msa0127080 | Msa0353880 | 0.823647 | 1.237910e-53 | -8.615850e-47 |
| Msa0130120 | Msa0353880 | 0.820122 | 8.104982e-53 | -8.615850e-47 |
| Msa0135400 | Msa0353880 | 0.803684 | 3.099546e-49 | -8.615850e-47 |
| Msa0143490 | Msa0353880 | 0.800350 | 1.501644e-48 | -8.615850e-47 |
| Msa0144340 | Msa0353880 | 0.841446 | 4.729868e-58 | -8.615850e-47 |
| Msa0149070 | Msa0353880 | 0.833896 | 4.097442e-56 | -8.615850e-47 |
| Msa0152380 | Msa0353880 | 0.815249 | 1.018309e-51 | -8.615850e-47 |
| Msa0155550 | Msa0353880 | 0.803054 | 4.187036e-49 | -8.615850e-47 |
| Msa0157020 | Msa0353880 | 0.804187 | 2.436012e-49 | -8.615850e-47 |
| Msa0164540 | Msa0353880 | 0.817807 | 2.723294e-52 | -8.615850e-47 |
| Msa0173610 | Msa0353880 | 0.806664 | 7.370410e-50 | -8.615850e-47 |
| Msa0175900 | Msa0353880 | 0.803330 | 3.670923e-49 | -8.615850e-47 |
| Msa0181010 | Msa0353880 | 0.818444 | 1.954361e-52 | -8.615850e-47 |
| Msa0183490 | Msa0353880 | 0.807369 | 5.226881e-50 | -8.615850e-47 |
| Msa0206970 | Msa0353880 | 0.810314 | 1.226007e-50 | -8.615850e-47 |
| Msa0207180 | Msa0353880 | 0.803084 | 4.126939e-49 | -8.615850e-47 |
| Msa0224960 | Msa0353880 | 0.810697 | 1.013101e-50 | -8.615850e-47 |
| Msa0225010 | Msa0353880 | 0.823138 | 1.627402e-53 | -8.615850e-47 |
| Msa0226800 | Msa0353880 | 0.805607 | 1.230504e-49 | -8.615850e-47 |
| Msa0234930 | Msa0353880 | 0.805704 | 1.173854e-49 | -8.615850e-47 |
| Msa0253410 | Msa0353880 | 0.809280 | 2.045418e-50 | -8.615850e-47 |
| Msa0273270 | Msa0353880 | 0.805941 | 1.046779e-49 | -8.615850e-47 |
| Msa0280140 | Msa0353880 | 0.803026 | 4.242943e-49 | -8.615850e-47 |
| Msa0288360 | Msa0353880 | 0.809970 | 1.454421e-50 | -8.615850e-47 |
| Msa0307750 | Msa0353880 | 0.811983 | 5.329014e-51 | -8.615850e-47 |
| Msa0315480 | Msa0353880 | 0.804684 | 1.919103e-49 | -8.615850e-47 |
| Msa0324060 | Msa0353880 | 0.816361 | 5.754979e-52 | -8.615850e-47 |
| Msa0353880 | Msa0371050 | 0.810310 | 1.228425e-50 | -8.615850e-47 |
| Msa0353880 | Msa0375430 | 0.809374 | 1.952615e-50 | -8.615850e-47 |
| Msa0353880 | Msa0379110 | 0.802632 | 5.116848e-49 | -8.615850e-47 |
| Msa0353880 | Msa0379900 | 0.818735 | 1.678915e-52 | -8.615850e-47 |
| Msa0353880 | Msa0380360 | 0.817217 | 3.698352e-52 | -8.615850e-47 |
| Msa0353880 | Msa0380420 | 0.801667 | 8.081807e-49 | -8.615850e-47 |
| Msa0353880 | Msa0392450 | 0.803587 | 3.246567e-49 | -8.615850e-47 |
| Msa0353880 | Msa0392480 | 0.807654 | 4.549209e-50 | -8.615850e-47 |
| Msa0353880 | Msa0394330 | 0.814479 | 1.508445e-51 | -8.615850e-47 |
| Msa0353880 | Msa0401370 | 0.812195 | 4.790661e-51 | -8.615850e-47 |
| Msa0353880 | Msa0414990 | 0.804694 | 1.910170e-49 | -8.615850e-47 |
| Msa0353880 | Msa0426480 | 0.803219 | 3.868889e-49 | -8.615850e-47 |
| Msa0353880 | Msa0426860 | 0.808277 | 3.351904e-50 | -8.615850e-47 |
| Msa0353880 | Msa0432680 | 0.800104 | 1.685248e-48 | -8.615850e-47 |
| Msa0353880 | Msa0434630 | 0.811773 | 5.921393e-51 | -8.615850e-47 |
| Msa0353880 | Msa0447810 | 0.850291 | 1.867390e-60 | -8.615850e-47 |
| Msa0353880 | Msa0448160 | 0.806668 | 7.357296e-50 | -8.615850e-47 |
| Msa0353880 | Msa0476180 | 0.803263 | 3.790298e-49 | -8.615850e-47 |
| Msa0353880 | Msa0485350 | 0.803786 | 2.952787e-49 | -8.615850e-47 |
| Msa0353880 | Msa0487560 | 0.810030 | 1.411230e-50 | -8.615850e-47 |
| Msa0353880 | Msa0487620 | 0.815660 | 8.248514e-52 | -8.615850e-47 |
| Msa0353880 | Msa0489620 | 0.808115 | 3.629864e-50 | -8.615850e-47 |
| Msa0353880 | Msa0498320 | 0.800795 | 1.218788e-48 | -8.615850e-47 |
| Msa0353880 | Msa0524020 | 0.824236 | 9.004026e-54 | -8.615850e-47 |
| Msa0353880 | Msa0528870 | 0.802377 | 5.773732e-49 | -8.615850e-47 |
| Msa0353880 | Msa0550720 | 0.816867 | 4.432071e-52 | -8.615850e-47 |
| Msa0353880 | Msa0560200 | 0.814815 | 1.271385e-51 | -8.615850e-47 |
| Msa0353880 | Msa0575450 | 0.828167 | 1.045136e-54 | -8.615850e-47 |
| Msa0353880 | Msa0583810 | 0.813735 | 2.201577e-51 | -8.615850e-47 |
| Msa0353880 | Msa0595780 | 0.811910 | 5.526210e-51 | -8.615850e-47 |
| Msa0353880 | Msa0619060 | 0.802842 | 4.630396e-49 | -8.615850e-47 |
| Msa0353880 | Msa0622390 | 0.827559 | 1.463280e-54 | -8.615850e-47 |
| Msa0353880 | Msa0624220 | 0.810495 | 1.120622e-50 | -8.615850e-47 |
| Msa0353880 | Msa0624240 | 0.814771 | 1.299895e-51 | -8.615850e-47 |
| Msa0353880 | Msa0626890 | 0.801905 | 7.221624e-49 | -8.615850e-47 |
| Msa0353880 | Msa0641400 | 0.822814 | 1.937250e-53 | -8.615850e-47 |
| Msa0353880 | Msa0647110 | 0.829863 | 4.056634e-55 | -8.615850e-47 |
| Msa0353880 | Msa0659130 | 0.805882 | 1.076941e-49 | -8.615850e-47 |
| Msa0353880 | Msa0702070 | 0.840673 | 7.546293e-58 | -8.615850e-47 |
| Msa0353880 | Msa0702120 | 0.849177 | 3.821473e-60 | -8.615850e-47 |
| Msa0353880 | Msa0703720 | 0.808142 | 3.581576e-50 | -8.615850e-47 |
| Msa0353880 | Msa0704570 | 0.812358 | 4.413160e-51 | -8.615850e-47 |
| Msa0353880 | Msa0705610 | 0.811089 | 8.335453e-51 | -8.615850e-47 |
| Msa0353880 | Msa0751640 | 0.801863 | 7.365777e-49 | -8.615850e-47 |
| Msa0353880 | Msa0802500 | 0.807944 | 3.946555e-50 | -8.615850e-47 |
| Msa0353880 | Msa0821490 | 0.805460 | 1.320811e-49 | -8.615850e-47 |
| Msa0353880 | Msa0881050 | 0.813295 | 2.751996e-51 | -8.615850e-47 |
| Msa0353880 | Msa0899140 | 0.825890 | 3.661499e-54 | -8.615850e-47 |
| Msa0353880 | Msa0906720 | 0.813839 | 2.088968e-51 | -8.615850e-47 |
| Msa0353880 | Msa0930160 | 0.805661 | 1.198543e-49 | -8.615850e-47 |
| Msa0353880 | Msa0938970 | 0.811166 | 8.022095e-51 | -8.615850e-47 |
| Msa0353880 | Msa0967940 | 0.802859 | 4.594164e-49 | -8.615850e-47 |
| Msa0353880 | Msa0975910 | 0.810498 | 1.118569e-50 | -8.615850e-47 |
| Msa0353880 | Msa1002980 | 0.808284 | 3.340882e-50 | -8.615850e-47 |
| Msa0353880 | Msa1022310 | 0.807012 | 6.222639e-50 | -8.615850e-47 |
| Msa0353880 | Msa1022390 | 0.800909 | 1.155117e-48 | -8.615850e-47 |
| Msa0353880 | Msa1030440 | 0.824876 | 6.365575e-54 | -8.615850e-47 |
| Msa0353880 | Msa1033120 | 0.806219 | 9.145916e-50 | -8.615850e-47 |
| Msa0353880 | Msa1035090 | 0.817711 | 2.862520e-52 | -8.615850e-47 |
| Msa0353880 | Msa1040010 | 0.816780 | 4.634355e-52 | -8.615850e-47 |
| Msa0353880 | Msa1040030 | 0.803861 | 2.847431e-49 | -8.615850e-47 |
| Msa0353880 | Msa1040770 | 0.804243 | 2.371522e-49 | -8.615850e-47 |
| Msa0353880 | Msa1070900 | 0.813352 | 2.673229e-51 | -8.615850e-47 |
| Msa0353880 | Msa1070930 | 0.815140 | 1.076566e-51 | -8.615850e-47 |
| Msa0353880 | Msa1076070 | 0.816680 | 4.881733e-52 | -8.615850e-47 |
| Msa0353880 | Msa1081850 | 0.811170 | 8.004137e-51 | -8.615850e-47 |
| Msa0353880 | Msa1090230 | 0.809886 | 1.516029e-50 | -8.615850e-47 |
| Msa0353880 | Msa1104570 | 0.812869 | 3.412160e-51 | -8.615850e-47 |
| Msa0353880 | Msa1116010 | 0.835341 | 1.775246e-56 | -8.615850e-47 |
| Msa0353880 | Msa1128350 | 0.804544 | 2.053400e-49 | -8.615850e-47 |
| Msa0353880 | Msa1145370 | 0.814969 | 1.175200e-51 | -8.615850e-47 |
| Msa0353880 | Msa1162470 | 0.839795 | 1.279710e-57 | -8.615850e-47 |
| Msa0353880 | Msa1180410 | 0.811307 | 7.473121e-51 | -8.615850e-47 |
| Msa0353880 | Msa1199210 | 0.800802 | 1.214662e-48 | -8.615850e-47 |
| Msa0353880 | Msa1206500 | 0.804144 | 2.487331e-49 | -8.615850e-47 |
| Msa0353880 | Msa1218720 | 0.800516 | 1.389662e-48 | -8.615850e-47 |
| Msa0353880 | Msa1220740 | 0.802971 | 4.354373e-49 | -8.615850e-47 |
| Msa0353880 | Msa1222390 | 0.837054 | 6.515955e-57 | -8.615850e-47 |
| Msa0353880 | Msa1232010 | 0.815034 | 1.136984e-51 | -8.615850e-47 |
| Msa0353880 | Msa1232860 | 0.805213 | 1.487959e-49 | -8.615850e-47 |
| Msa0353880 | Msa1250070 | 0.808359 | 3.219539e-50 | -8.615850e-47 |
| Msa0353880 | Msa1293530 | 0.825630 | 4.220314e-54 | -8.615850e-47 |
| Msa0353880 | Msa1302170 | 0.814572 | 1.438886e-51 | -8.615850e-47 |
| Msa0353880 | Msa1302920 | 0.807646 | 4.566809e-50 | -8.615850e-47 |
| Msa0353880 | Msa1309100 | 0.833260 | 5.906205e-56 | -8.615850e-47 |
| Msa0353880 | Msa1325650 | 0.826151 | 3.175082e-54 | -8.615850e-47 |
| Msa0353880 | Msa1331900 | 0.815062 | 1.120761e-51 | -8.615850e-47 |
| Msa0353880 | Msa1334650 | 0.802166 | 6.382756e-49 | -8.615850e-47 |
| Msa0353880 | Msa1336320 | 0.830828 | 2.357543e-55 | -8.615850e-47 |
| Msa0353880 | Msa1339250 | 0.824213 | 9.117662e-54 | -8.615850e-47 |
| Msa0353880 | Msa1343540 | 0.801214 | 1.000811e-48 | -8.615850e-47 |
| Msa0353880 | Msa1345470 | 0.836795 | 7.590324e-57 | -8.615850e-47 |
| Msa0353880 | Msa1353270 | 0.803445 | 3.475154e-49 | -8.615850e-47 |
| Msa0353880 | Msa1365210 | 0.823907 | 1.075577e-53 | -8.615850e-47 |
| Msa0353880 | Msa1367810 | 0.824224 | 9.064189e-54 | -8.615850e-47 |
| Msa0353880 | Msa1372560 | 0.816098 | 6.586969e-52 | -8.615850e-47 |
| Msa0353880 | Msa1373340 | 0.810563 | 1.083342e-50 | -8.615850e-47 |
| Msa0353880 | Msa1374850 | 0.807877 | 4.077666e-50 | -8.615850e-47 |
| Msa0353880 | Msa1375630 | 0.802239 | 6.164407e-49 | -8.615850e-47 |
| Msa0353880 | Msa1392680 | 0.822473 | 2.324378e-53 | -8.615850e-47 |
| Msa0353880 | Msa1406230 | 0.800919 | 1.149564e-48 | -8.615850e-47 |
| Msa0353880 | Msa1406550 | 0.814944 | 1.190503e-51 | -8.615850e-47 |
| Msa0353880 | Msa1416460 | 0.808315 | 3.289363e-50 | -8.615850e-47 |
| Msa0353880 | Msa1422490 | 0.815163 | 1.064420e-51 | -8.615850e-47 |
| Msa0353880 | Msa1426870 | 0.823204 | 1.570777e-53 | -8.615850e-47 |
| Msa0353880 | Msa1427020 | 0.828340 | 9.493964e-55 | -8.615850e-47 |
| Msa0353880 | Msa1430940 | 0.813900 | 2.025184e-51 | -8.615850e-47 |
| Msa0353880 | Msa1439800 | 0.813393 | 2.618873e-51 | -8.615850e-47 |
| Msa0353880 | Msa1444750 | 0.811993 | 5.301476e-51 | -8.615850e-47 |
| Msa0353880 | Msa1449320 | 0.803726 | 3.038003e-49 | -8.615850e-47 |
| Msa0353880 | Msa1449680 | 0.803750 | 3.003261e-49 | -8.615850e-47 |
| Msa0353880 | Msa1455120 | 0.800610 | 1.329505e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353880 | MtrunA17_Chr3g0089161 | 86.667 | 105 | 12 | 1 | 1 | 105 | 1 | 103 | 1.43e-49 | 155 |
| Msa0353880 | MtrunA17_Chr3g0089161 | 82.796 | 93 | 15 | 1 | 16 | 107 | 95 | 187 | 1.58e-45 | 145 |
| Msa0353880 | MtrunA17_Chr4g0019291 | 71.296 | 108 | 28 | 3 | 1 | 106 | 1 | 107 | 8.38e-44 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353880 | AT1G51400.1 | 60.000 | 110 | 37 | 4 | 1 | 107 | 1 | 106 | 1.71e-31 | 107 |
| Msa0353880 | AT3G21055.1 | 54.630 | 108 | 41 | 4 | 1 | 106 | 1 | 102 | 3.60e-24 | 89.0 |
| Msa0353880 | AT3G21055.2 | 54.630 | 108 | 41 | 4 | 1 | 106 | 41 | 142 | 9.13e-24 | 89.0 |
Find 26 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCTGTTTGCTCTGTTGC+TGG | 0.185357 | 3_1:-24582889 | Msa0353880:CDS |
| CTGCTGTTTGCTCTGTTGCT+GGG | 0.300217 | 3_1:-24582888 | Msa0353880:CDS |
| ATCCTCAATCCTTGGCTTCC+CGG | 0.339335 | 3_1:-24583064 | Msa0353880:CDS |
| CTCTGTTGCTGGGGTTGCAA+TGG | 0.391387 | 3_1:-24582878 | Msa0353880:CDS |
| GCTTCCCGGCTGTAACCAAC+CGG | 0.484721 | 3_1:-24583050 | Msa0353880:CDS |
| GTTGGCATAGTGACACAAAC+AGG | 0.491066 | 3_1:+24582805 | None:intergenic |
| AATGCTGTCCGAGCAGTTGA+AGG | 0.499596 | 3_1:-24582988 | Msa0353880:CDS |
| TGCTGTTTGCTCTGTTGCTG+GGG | 0.508878 | 3_1:-24582887 | Msa0353880:CDS |
| ACCATGACATCCTCAATCCT+TGG | 0.515033 | 3_1:-24583072 | Msa0353880:CDS |
| AACAACAAAGAGGGCAGCAA+TGG | 0.517711 | 3_1:-24582943 | Msa0353880:CDS |
| TCTTCTCCTCTGCGATGCTA+CGG | 0.528081 | 3_1:+24583023 | None:intergenic |
| AGCCGGGAAGCCAAGGATTG+AGG | 0.543329 | 3_1:+24583062 | None:intergenic |
| TCTGCGATGCTACGGATGAC+CGG | 0.544879 | 3_1:+24583031 | None:intergenic |
| ACAAAGAGGGCAGCAATGGA+AGG | 0.546411 | 3_1:-24582939 | Msa0353880:CDS |
| TGGTTACAGCCGGGAAGCCA+AGG | 0.559386 | 3_1:+24583055 | None:intergenic |
| GATGACCGGTTGGTTACAGC+CGG | 0.561463 | 3_1:+24583045 | None:intergenic |
| ATGCTGTCCGAGCAGTTGAA+GGG | 0.565277 | 3_1:-24582987 | Msa0353880:CDS |
| GCCAAGGATTGAGGATGTCA+TGG | 0.568229 | 3_1:+24583071 | None:intergenic |
| GTGTCACTATGCCAACAGCT+AGG | 0.576409 | 3_1:-24582798 | Msa0353880:CDS |
| TTGCGACAAATCCTAGCTGT+TGG | 0.581063 | 3_1:+24582787 | None:intergenic |
| TGCTGTCCGAGCAGTTGAAG+GGG | 0.590682 | 3_1:-24582986 | Msa0353880:CDS |
| CGATGCTACGGATGACCGGT+TGG | 0.597909 | 3_1:+24583035 | None:intergenic |
| CAAATATGATAACAACAAAG+AGG | 0.606053 | 3_1:-24582953 | Msa0353880:CDS |
| AAATATGATAACAACAAAGA+GGG | 0.608783 | 3_1:-24582952 | Msa0353880:CDS |
| ATGACCGGTTGGTTACAGCC+GGG | 0.647755 | 3_1:+24583046 | None:intergenic |
| GGTCATCCGTAGCATCGCAG+AGG | 0.728401 | 3_1:-24583029 | Msa0353880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGATAACAACAAAGA+GGG | - | chr3_1:24582915-24582934 | Msa0353880:CDS | 20.0% |
| ! | CAAATATGATAACAACAAAG+AGG | - | chr3_1:24582914-24582933 | Msa0353880:CDS | 25.0% |
| !!! | ATACTTTTTCTTTGCTTCTG+GGG | + | chr3_1:24583039-24583058 | None:intergenic | 30.0% |
| !!! | CATACTTTTTCTTTGCTTCT+GGG | + | chr3_1:24583040-24583059 | None:intergenic | 30.0% |
| !!! | GCATACTTTTTCTTTGCTTC+TGG | + | chr3_1:24583041-24583060 | None:intergenic | 35.0% |
| GCAGATGATGAACCAAAAAG+AGG | - | chr3_1:24583011-24583030 | Msa0353880:CDS | 40.0% | |
| ACCATGACATCCTCAATCCT+TGG | - | chr3_1:24582795-24582814 | Msa0353880:CDS | 45.0% | |
| ! | TCTTTTCCCCTTCAACTGCT+CGG | + | chr3_1:24582890-24582909 | None:intergenic | 45.0% |
| AACAACAAAGAGGGCAGCAA+TGG | - | chr3_1:24582924-24582943 | Msa0353880:CDS | 45.0% | |
| GTTGGCATAGTGACACAAAC+AGG | + | chr3_1:24583065-24583084 | None:intergenic | 45.0% | |
| TTGCGACAAATCCTAGCTGT+TGG | + | chr3_1:24583083-24583102 | None:intergenic | 45.0% | |
| GCCAAGGATTGAGGATGTCA+TGG | + | chr3_1:24582799-24582818 | None:intergenic | 50.0% | |
| ATCCTCAATCCTTGGCTTCC+CGG | - | chr3_1:24582803-24582822 | Msa0353880:CDS | 50.0% | |
| TCTTCTCCTCTGCGATGCTA+CGG | + | chr3_1:24582847-24582866 | None:intergenic | 50.0% | |
| AATGCTGTCCGAGCAGTTGA+AGG | - | chr3_1:24582879-24582898 | Msa0353880:CDS | 50.0% | |
| ATGCTGTCCGAGCAGTTGAA+GGG | - | chr3_1:24582880-24582899 | Msa0353880:CDS | 50.0% | |
| ACAAAGAGGGCAGCAATGGA+AGG | - | chr3_1:24582928-24582947 | Msa0353880:CDS | 50.0% | |
| ! | CTGCTGTTTGCTCTGTTGCT+GGG | - | chr3_1:24582979-24582998 | Msa0353880:CDS | 50.0% |
| ! | TGCTGTTTGCTCTGTTGCTG+GGG | - | chr3_1:24582980-24582999 | Msa0353880:CDS | 50.0% |
| !!! | GCTTCTGGGGTACCTCTTTT+TGG | + | chr3_1:24583026-24583045 | None:intergenic | 50.0% |
| ! | GTGTCACTATGCCAACAGCT+AGG | - | chr3_1:24583069-24583088 | Msa0353880:CDS | 50.0% |
| ! | ATGACCGGTTGGTTACAGCC+GGG | + | chr3_1:24582824-24582843 | None:intergenic | 55.0% |
| ! | GATGACCGGTTGGTTACAGC+CGG | + | chr3_1:24582825-24582844 | None:intergenic | 55.0% |
| TCTGCGATGCTACGGATGAC+CGG | + | chr3_1:24582839-24582858 | None:intergenic | 55.0% | |
| TGCTGTCCGAGCAGTTGAAG+GGG | - | chr3_1:24582881-24582900 | Msa0353880:CDS | 55.0% | |
| ! | GCTGCTGTTTGCTCTGTTGC+TGG | - | chr3_1:24582978-24582997 | Msa0353880:CDS | 55.0% |
| CTCTGTTGCTGGGGTTGCAA+TGG | - | chr3_1:24582989-24583008 | Msa0353880:CDS | 55.0% | |
| AGCCGGGAAGCCAAGGATTG+AGG | + | chr3_1:24582808-24582827 | None:intergenic | 60.0% | |
| TGGTTACAGCCGGGAAGCCA+AGG | + | chr3_1:24582815-24582834 | None:intergenic | 60.0% | |
| GCTTCCCGGCTGTAACCAAC+CGG | - | chr3_1:24582817-24582836 | Msa0353880:CDS | 60.0% | |
| CGATGCTACGGATGACCGGT+TGG | + | chr3_1:24582835-24582854 | None:intergenic | 60.0% | |
| GGTCATCCGTAGCATCGCAG+AGG | - | chr3_1:24582838-24582857 | Msa0353880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 24582783 | 24583106 | 24582783 | ID=Msa0353880;Name=Msa0353880 |
| chr3_1 | mRNA | 24582783 | 24583106 | 24582783 | ID=Msa0353880-mRNA-1;Parent=Msa0353880;Name=Msa0353880-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|107 |
| chr3_1 | exon | 24582783 | 24583106 | 24582783 | ID=Msa0353880-mRNA-1:exon:5461;Parent=Msa0353880-mRNA-1 |
| chr3_1 | CDS | 24582783 | 24583106 | 24582783 | ID=Msa0353880-mRNA-1:cds;Parent=Msa0353880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
