AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1022390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022390 MtrunA17_Chr7g0239041 62.927 205 14 3 19 215 40 190 8.29e-63 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022390 AT5G02160.1 51.389 144 16 2 72 215 37 126 8.23e-30 108

Find 55 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACTTTCTTCACTTTGTT+TGG 0.220105 7_1:-48572851 Msa1022390:CDS
TATCTTGTTGCTGGTGCTAT+TGG 0.295597 7_1:-48572651 Msa1022390:CDS
GGCACTATTTATCTTGTTGC+TGG 0.299445 7_1:-48572660 Msa1022390:CDS
GTGATGGAGCAGGGTTTGTT+AGG 0.314720 7_1:-48571293 Msa1022390:CDS
AAATGAGAGTTTAGTGTTGT+TGG 0.340680 7_1:+48572764 None:intergenic
GCTATTGGAATTGCTCTTGT+TGG 0.368974 7_1:-48572636 Msa1022390:CDS
AACAACACTAAACTCTCATT+TGG 0.372290 7_1:-48572762 Msa1022390:CDS
ACAATGATCAGAGTGATAAT+TGG 0.383500 7_1:-48571825 Msa1022390:intron
GATTTCAGCGACCTTCGATT+AGG 0.388388 7_1:+48568181 None:intergenic
TTGTGCTCGTTGTGATGGTT+TGG 0.405035 7_1:-48571214 Msa1022390:CDS
GTCATAGTGGTGGTTGGTGG+TGG 0.418991 7_1:-48571666 Msa1022390:intron
ATTGGGAATGATTGTGTTCA+AGG 0.420585 7_1:+48572797 None:intergenic
TCAGTTGTTGTTTCAGCAGT+TGG 0.426749 7_1:-48572699 Msa1022390:CDS
TGTGCTCGTTGTGATGGTTT+GGG 0.434742 7_1:-48571213 Msa1022390:CDS
TCTTTACGTGAGAAGATGAT+AGG 0.453999 7_1:+48572603 None:intergenic
CAGGGTTTGTTAGGAAAGGT+GGG 0.459410 7_1:-48571284 Msa1022390:CDS
GCAGGGTTTGTTAGGAAAGG+TGG 0.460825 7_1:-48571285 Msa1022390:CDS
GAGAGCAAATGCAGCAAGAA+AGG 0.478276 7_1:-48571253 Msa1022390:CDS
CAGAAGAACCAAGGAGGAAG+AGG 0.482583 7_1:+48568092 None:intergenic
GTTGTTGGAAATTGTAACAT+TGG 0.483393 7_1:+48572779 None:intergenic
TGCCCAGATTGTGATGGAGC+AGG 0.494129 7_1:-48571303 Msa1022390:intron
AACACTAAACTCTCATTTGG+AGG 0.496202 7_1:-48572759 Msa1022390:CDS
TTGTTGAGGTATTGTTGGAT+TGG 0.496304 7_1:+48572908 None:intergenic
GGTGTCATAGTGGTGGTTGG+TGG 0.503150 7_1:-48571669 Msa1022390:CDS
TGATAATTGGCAATGATGAT+TGG 0.508812 7_1:-48571812 Msa1022390:CDS
CAATGGCCGGAGTCGATTAG+TGG 0.510833 7_1:-48571739 Msa1022390:CDS
TTGTTGGAAATTGTAACATT+GGG 0.522805 7_1:+48572780 None:intergenic
ATTGTTTGTGCTCGTTGTGA+TGG 0.530028 7_1:-48571219 Msa1022390:CDS
GGAGCAGGGTTTGTTAGGAA+AGG 0.545979 7_1:-48571288 Msa1022390:CDS
AATGATTGTGTTCAAGGTCA+TGG 0.560862 7_1:+48572803 None:intergenic
AGAATGATGATTGGTGGACA+AGG 0.565092 7_1:-48571767 Msa1022390:CDS
GCCCAGATTGTGATGGAGCA+GGG 0.567834 7_1:-48571302 Msa1022390:intron
GCAACGATCAGAATGATGAT+TGG 0.579714 7_1:-48571776 Msa1022390:CDS
GGACAAGGGATTGCAATGGC+CGG 0.582224 7_1:-48571752 Msa1022390:CDS
TATTAACATGACACGTAGCA+TGG 0.585320 7_1:+48572932 None:intergenic
TGTGGTGTCATAGTGGTGGT+TGG 0.588471 7_1:-48571672 Msa1022390:CDS
GTTACATTGTATTAGAAACA+TGG 0.592738 7_1:-48572829 Msa1022390:CDS
GTTGGAGATGTATCTTCTGA+TGG 0.593310 7_1:-48572681 Msa1022390:CDS
AATGATGATTGGCGGACAGA+TGG 0.595230 7_1:-48571801 Msa1022390:CDS
ATGTAGTTGCTATCTCCGAC+CGG 0.600593 7_1:-48568135 Msa1022390:CDS
ACGATCAGAATGATGATTGG+TGG 0.610056 7_1:-48571773 Msa1022390:CDS
GAAGGCAGAGTGAGTCCGGT+CGG 0.618479 7_1:+48568120 None:intergenic
AGTTATCTGCAGAAGAACCA+AGG 0.619394 7_1:+48568083 None:intergenic
CTATGACCACTAATCGACTC+CGG 0.630470 7_1:+48571733 None:intergenic
CTCAGATTACTCCTAATCGA+AGG 0.630992 7_1:-48568192 Msa1022390:intron
AGTGGTGATCAGAGTATATG+TGG 0.635587 7_1:-48571690 Msa1022390:CDS
TAATTGGCAATGATGATTGG+CGG 0.636843 7_1:-48571809 Msa1022390:CDS
GAATGATGATTGGTGGACAA+GGG 0.637972 7_1:-48571766 Msa1022390:CDS
GAGTATATGTGGTGTCATAG+TGG 0.656007 7_1:-48571679 Msa1022390:CDS
TATATGTGGTGTCATAGTGG+TGG 0.661058 7_1:-48571676 Msa1022390:CDS
ATCAGATGCCCAGATTGTGA+TGG 0.661235 7_1:-48571309 Msa1022390:intron
AGGGTTTGTTAGGAAAGGTG+GGG 0.670666 7_1:-48571283 Msa1022390:CDS
AAGGTCGCTGAAATCTATTG+TGG 0.684883 7_1:-48568173 Msa1022390:CDS
TGGTGGACAAGGGATTGCAA+TGG 0.708294 7_1:-48571756 Msa1022390:CDS
TATCTGCAGAAGAACCAAGG+AGG 0.736411 7_1:+48568086 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAAATATTTATATT+AGG + chr7_1:48569075-48569094 None:intergenic 0.0%
!! AAAAAAATAAAATCTGATTT+CGG - chr7_1:48568895-48568914 Msa1022390:intron 10.0%
!! AAAAATAGGTTTATAATTAT+TGG + chr7_1:48569502-48569521 None:intergenic 10.0%
!!! ATGTTTTTTTTTTTTTTTTC+CGG - chr7_1:48570247-48570266 Msa1022390:intron 10.0%
!!! TTTATATTTTAAGATAAAAG+AGG + chr7_1:48570694-48570713 None:intergenic 10.0%
!!! TTATAAGAATAATATTTTGT+TGG + chr7_1:48571376-48571395 None:intergenic 10.0%
!!! TATTATATTTGTTATATTGT+TGG + chr7_1:48571580-48571599 None:intergenic 10.0%
!!! TTATATTCAAATTTGTTTAA+GGG - chr7_1:48571697-48571716 Msa1022390:CDS 10.0%
!! AATAATAATCTCAATAATAG+TGG - chr7_1:48569100-48569119 Msa1022390:intron 15.0%
!!! TAATTATAAACCTATTTTTG+TGG - chr7_1:48569503-48569522 Msa1022390:intron 15.0%
!!! TATTATGTTTTGTATGAAAA+AGG + chr7_1:48570724-48570743 None:intergenic 15.0%
!!! CTTATATTCAAATTTGTTTA+AGG - chr7_1:48571696-48571715 Msa1022390:CDS 15.0%
!! AAAAAGACAAAAATAAACAT+CGG + chr7_1:48572343-48572362 None:intergenic 15.0%
!!! TGTTGTTTTTTTTTTTGTTG+AGG + chr7_1:48568124-48568143 None:intergenic 20.0%
!!! TTCTAACAGAAATTTTGTAT+AGG - chr7_1:48568617-48568636 Msa1022390:intron 20.0%
!!! AAATTTTGTATAGGCATTTT+TGG - chr7_1:48568626-48568645 Msa1022390:intron 20.0%
!!! GAATTGTTTTTTTTTTTTCG+TGG + chr7_1:48569038-48569057 None:intergenic 20.0%
!! AATCTTAAAACCACAAAAAT+AGG + chr7_1:48569516-48569535 None:intergenic 20.0%
!!! TTTTTTCATTGATTCTTGTT+TGG - chr7_1:48569605-48569624 Msa1022390:intron 20.0%
!!! ATAGAAATGCTTTTTTCTTT+TGG - chr7_1:48569846-48569865 Msa1022390:intron 20.0%
!! TTCTATAATCTAAACTGTAT+AGG - chr7_1:48569980-48569999 Msa1022390:intron 20.0%
!! TCTATAATCTAAACTGTATA+GGG - chr7_1:48569981-48570000 Msa1022390:intron 20.0%
!! CTACTTTATATACAAAAAGA+AGG + chr7_1:48570525-48570544 None:intergenic 20.0%
!!! CTTTTTGTATATAAAGTAGA+AGG - chr7_1:48570526-48570545 Msa1022390:intron 20.0%
!! GTGTAATTTAAAAAATTCTC+AGG + chr7_1:48570665-48570684 None:intergenic 20.0%
!!! ATATTTTAAGATAAAAGAGG+AGG + chr7_1:48570691-48570710 None:intergenic 20.0%
!!! GTTGTTAGATAACTTTTATT+AGG + chr7_1:48571017-48571036 None:intergenic 20.0%
!!! TTTGGAACTTGATTAATTAA+TGG + chr7_1:48571236-48571255 None:intergenic 20.0%
!!! AATTTGTTTAAGGGTATAAT+TGG - chr7_1:48571706-48571725 Msa1022390:CDS 20.0%
!!! AATTAGTTTTTTTTTTCCAG+AGG - chr7_1:48572406-48572425 Msa1022390:intron 20.0%
!!! ATTTTAACTAATATTTCCTC+TGG + chr7_1:48572425-48572444 None:intergenic 20.0%
!!! ATTGAAAGAAAGTGTTTATT+GGG + chr7_1:48572583-48572602 None:intergenic 20.0%
!!! AATTGAAAGAAAGTGTTTAT+TGG + chr7_1:48572584-48572603 None:intergenic 20.0%
!!! CCAATGCATTTTTTTTTTTA+AGG + chr7_1:48572633-48572652 None:intergenic 20.0%
!! CCTTAAAAAAAAAAATGCAT+TGG - chr7_1:48572630-48572649 Msa1022390:CDS 20.0%
!!! TTTTTTTGTTGAGGTATTGT+TGG + chr7_1:48568115-48568134 None:intergenic 25.0%
! GTTACATTGTATTAGAAACA+TGG - chr7_1:48568186-48568205 Msa1022390:CDS 25.0%
! TTGTTGGAAATTGTAACATT+GGG + chr7_1:48568238-48568257 None:intergenic 25.0%
!!! CATCGTTATTTTCATTTTCA+TGG - chr7_1:48568449-48568468 Msa1022390:intron 25.0%
!! ATTCTGAGAAAATTAGAGAT+AGG + chr7_1:48568713-48568732 None:intergenic 25.0%
! GGTAAAACTATACTTATCTA+TGG + chr7_1:48568829-48568848 None:intergenic 25.0%
!!! TAAGTATAGTTTTACCTTGA+CGG - chr7_1:48568833-48568852 Msa1022390:intron 25.0%
!!! ACCTAGTTTTTTAATCTACT+TGG - chr7_1:48569544-48569563 Msa1022390:intron 25.0%
!!! CCTAGTTTTTTAATCTACTT+GGG - chr7_1:48569545-48569564 Msa1022390:intron 25.0%
! TGCACTTGAAATAAAAATCT+AGG + chr7_1:48569581-48569600 None:intergenic 25.0%
! ACATCATTAACAAACAACAA+AGG + chr7_1:48569669-48569688 None:intergenic 25.0%
! CAGACATTTAAATCCAAATA+GGG + chr7_1:48569907-48569926 None:intergenic 25.0%
! TCAGACATTTAAATCCAAAT+AGG + chr7_1:48569908-48569927 None:intergenic 25.0%
!!! ATATTTCAACGCATTTTTAG+AGG - chr7_1:48569929-48569948 Msa1022390:intron 25.0%
! ACATTACATTACACAAGAAA+GGG + chr7_1:48570054-48570073 None:intergenic 25.0%
! TACATTACATTACACAAGAA+AGG + chr7_1:48570055-48570074 None:intergenic 25.0%
!! TATGTTTTGTATGAAAAAGG+AGG + chr7_1:48570721-48570740 None:intergenic 25.0%
! ATGAGAGATGTTTAATAAGA+GGG + chr7_1:48570766-48570785 None:intergenic 25.0%
! TTGTCGACACATAAAAATAA+TGG - chr7_1:48570873-48570892 Msa1022390:intron 25.0%
!!! TCTCTCAATTTTTTAAAGCT+AGG - chr7_1:48570985-48571004 Msa1022390:intron 25.0%
! ACCAAGGTTCATAAAAAATT+GGG + chr7_1:48571055-48571074 None:intergenic 25.0%
! AACCAAGGTTCATAAAAAAT+TGG + chr7_1:48571056-48571075 None:intergenic 25.0%
! GTATATATAAAGCGAATACA+TGG + chr7_1:48571446-48571465 None:intergenic 25.0%
! ATTCTCTCCTATTATATCAA+TGG - chr7_1:48572175-48572194 Msa1022390:intron 25.0%
! ATACAAGCCATTGATATAAT+AGG + chr7_1:48572185-48572204 None:intergenic 25.0%
! ATATACACCGATATAATTAG+GGG + chr7_1:48572246-48572265 None:intergenic 25.0%
! CATATACACCGATATAATTA+GGG + chr7_1:48572247-48572266 None:intergenic 25.0%
! TCATATACACCGATATAATT+AGG + chr7_1:48572248-48572267 None:intergenic 25.0%
! TTTGCTAGGATTAGATATAA+AGG + chr7_1:48572459-48572478 None:intergenic 25.0%
! AAAACATTAGAATTAGGGTT+TGG + chr7_1:48572499-48572518 None:intergenic 25.0%
!! AAACCCTAATTCTAATGTTT+TGG - chr7_1:48572498-48572517 Msa1022390:intron 25.0%
! ATCAACATAGATTCATCTAA+CGG + chr7_1:48572540-48572559 None:intergenic 25.0%
! AAAAACAACATCTTTGTTGA+AGG + chr7_1:48572800-48572819 None:intergenic 25.0%
GTTGTTGGAAATTGTAACAT+TGG + chr7_1:48568239-48568258 None:intergenic 30.0%
AAATGAGAGTTTAGTGTTGT+TGG + chr7_1:48568254-48568273 None:intergenic 30.0%
AACAACACTAAACTCTCATT+TGG - chr7_1:48568253-48568272 Msa1022390:intron 30.0%
TGAACAAATTACACTTGCAA+TGG - chr7_1:48568559-48568578 Msa1022390:intron 30.0%
TCAATAAAAAACATCCGTCA+AGG + chr7_1:48568850-48568869 None:intergenic 30.0%
TTAATTGAACTTTGCTCAGT+TGG - chr7_1:48568963-48568982 Msa1022390:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr7_1:48568990-48569009 Msa1022390:intron 30.0%
ACAATGATCAGAGTGATAAT+TGG - chr7_1:48569190-48569209 Msa1022390:intron 30.0%
TGATAATTGGCAATGATGAT+TGG - chr7_1:48569203-48569222 Msa1022390:intron 30.0%
!!! GTGGTCATAGTAGTTTTAAA+TGG - chr7_1:48569295-48569314 Msa1022390:intron 30.0%
CCCAAGTAGATTAAAAAACT+AGG + chr7_1:48569548-48569567 None:intergenic 30.0%
!! TCATTGATTCTTGTTTGGAA+TGG - chr7_1:48569610-48569629 Msa1022390:intron 30.0%
AGCATTTCTATTTGTCAACT+TGG + chr7_1:48569837-48569856 None:intergenic 30.0%
!! CGCATTTTTAGAGGTTTTTA+CGG - chr7_1:48569938-48569957 Msa1022390:intron 30.0%
!! GCATTTTTAGAGGTTTTTAC+GGG - chr7_1:48569939-48569958 Msa1022390:intron 30.0%
!! CATTTTTAGAGGTTTTTACG+GGG - chr7_1:48569940-48569959 Msa1022390:intron 30.0%
GTGATGAACTTCATAATGTA+AGG - chr7_1:48570117-48570136 Msa1022390:intron 30.0%
TGAACATACTTTGCTTAAAC+CGG + chr7_1:48570269-48570288 None:intergenic 30.0%
! CTTCCTAGAAGAGAATATTT+TGG + chr7_1:48570376-48570395 None:intergenic 30.0%
TTTCACTTGTCTACTTCAAA+CGG - chr7_1:48570447-48570466 Msa1022390:intron 30.0%
TAGAAGGTGATTTGATACAA+GGG - chr7_1:48570542-48570561 Msa1022390:intron 30.0%
AACATAGAAGAACATTCTTG+AGG + chr7_1:48570596-48570615 None:intergenic 30.0%
GATGAGAGATGTTTAATAAG+AGG + chr7_1:48570767-48570786 None:intergenic 30.0%
ACGAGTTCATCATTATTCTA+TGG + chr7_1:48570794-48570813 None:intergenic 30.0%
!! TAATGATGAACTCGTTTTTG+TGG - chr7_1:48570799-48570818 Msa1022390:intron 30.0%
!! AACTCGTTTTTGTGGAAAAA+TGG - chr7_1:48570807-48570826 Msa1022390:intron 30.0%
AAGACAACCAATTTATACCA+CGG + chr7_1:48570845-48570864 None:intergenic 30.0%
TCGACACATAAAAATAATGG+TGG - chr7_1:48570876-48570895 Msa1022390:intron 30.0%
ACATAAAAATAATGGTGGCA+TGG - chr7_1:48570881-48570900 Msa1022390:intron 30.0%
AGTTATCTAACAACCAACTT+AGG - chr7_1:48571023-48571042 Msa1022390:intron 30.0%
!!! ACCCAATTTTTTATGAACCT+TGG - chr7_1:48571051-48571070 Msa1022390:intron 30.0%
!! AGCATTGATGGTAACATAAT+AGG - chr7_1:48571089-48571108 Msa1022390:intron 30.0%
TATGCTATGTACTCACTAAA+AGG + chr7_1:48571197-48571216 None:intergenic 30.0%
CAAATGATTGTAGTTCTCAA+GGG - chr7_1:48571252-48571271 Msa1022390:CDS 30.0%
! TAAAGCGAATACATGGTTTT+GGG + chr7_1:48571439-48571458 None:intergenic 30.0%
! ATAAAGCGAATACATGGTTT+TGG + chr7_1:48571440-48571459 None:intergenic 30.0%
ACATTAGTGCAATAAGAAGA+CGG + chr7_1:48571494-48571513 None:intergenic 30.0%
! TGTTTAAGGGTATAATTGGA+AGG - chr7_1:48571710-48571729 Msa1022390:CDS 30.0%
!!! TAACGCTATTTTTGTTGCAA+AGG - chr7_1:48572022-48572041 Msa1022390:intron 30.0%
!! TATTTTTGTTGCAAAGGAGA+AGG - chr7_1:48572028-48572047 Msa1022390:intron 30.0%
ATACAAGCATCTCTTAAGTT+TGG - chr7_1:48572059-48572078 Msa1022390:intron 30.0%
AAAAATGAGTTTAACGGTAC+TGG + chr7_1:48572122-48572141 None:intergenic 30.0%
!! ACCGTTAAACTCATTTTTCT+CGG - chr7_1:48572124-48572143 Msa1022390:intron 30.0%
ACCGAGAAAAATGAGTTTAA+CGG + chr7_1:48572128-48572147 None:intergenic 30.0%
TATACACCGATATAATTAGG+GGG + chr7_1:48572245-48572264 None:intergenic 30.0%
!! AAAAAAAGTACTCATGCAAG+AGG - chr7_1:48572313-48572332 Msa1022390:intron 30.0%
GAGCCAAAACATTAGAATTA+GGG + chr7_1:48572504-48572523 None:intergenic 30.0%
AAGTGTTTATTGGGAACATA+TGG + chr7_1:48572574-48572593 None:intergenic 30.0%
!! ATTTTAAGTCACAAGTGCAT+TGG - chr7_1:48572601-48572620 Msa1022390:CDS 30.0%
TATTAACATGACACGTAGCA+TGG + chr7_1:48568086-48568105 None:intergenic 35.0%
!! TTGTTGAGGTATTGTTGGAT+TGG + chr7_1:48568110-48568129 None:intergenic 35.0%
CTCACTTTCTTCACTTTGTT+TGG - chr7_1:48568164-48568183 Msa1022390:CDS 35.0%
AATGATTGTGTTCAAGGTCA+TGG + chr7_1:48568215-48568234 None:intergenic 35.0%
ATTGGGAATGATTGTGTTCA+AGG + chr7_1:48568221-48568240 None:intergenic 35.0%
AACACTAAACTCTCATTTGG+AGG - chr7_1:48568256-48568275 Msa1022390:intron 35.0%
TCTTTACGTGAGAAGATGAT+AGG + chr7_1:48568415-48568434 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - chr7_1:48568995-48569014 Msa1022390:intron 35.0%
TGGTTGAAACTAGTTGTTGT+TGG - chr7_1:48569120-48569139 Msa1022390:intron 35.0%
! TTGAAACTAGTTGTTGTTGG+AGG - chr7_1:48569123-48569142 Msa1022390:intron 35.0%
TAATTGGCAATGATGATTGG+CGG - chr7_1:48569206-48569225 Msa1022390:intron 35.0%
!! GTTTTAAATGGTGATCACAG+TGG - chr7_1:48569307-48569326 Msa1022390:intron 35.0%
TCATAGGGTAGGAAAAGTAA+TGG + chr7_1:48569872-48569891 None:intergenic 35.0%
CTTCATAATGTAAGGAGTGA+AGG - chr7_1:48570125-48570144 Msa1022390:intron 35.0%
GTTATCCAGCTGATTATTTG+TGG - chr7_1:48570295-48570314 Msa1022390:intron 35.0%
GATTATTTGTGGCATGTTCT+AGG - chr7_1:48570306-48570325 Msa1022390:intron 35.0%
GCACCAAAATATTCTCTTCT+AGG - chr7_1:48570370-48570389 Msa1022390:intron 35.0%
!! GATTTGTTGTGATATCAGAG+AGG - chr7_1:48570395-48570414 Msa1022390:intron 35.0%
GTAGAAGGTGATTTGATACA+AGG - chr7_1:48570541-48570560 Msa1022390:intron 35.0%
TTTGATACAAGGGCAAACAA+CGG - chr7_1:48570552-48570571 Msa1022390:intron 35.0%
TTAAAAAATTCTCAGGCGAG+AGG + chr7_1:48570658-48570677 None:intergenic 35.0%
AGATGTTTAATAAGAGGGAG+GGG + chr7_1:48570761-48570780 None:intergenic 35.0%
GAGATGTTTAATAAGAGGGA+GGG + chr7_1:48570762-48570781 None:intergenic 35.0%
AGAGATGTTTAATAAGAGGG+AGG + chr7_1:48570763-48570782 None:intergenic 35.0%
!! TCGTTTTTGTGGAAAAATGG+TGG - chr7_1:48570810-48570829 Msa1022390:intron 35.0%
! TAATGGTGGCATGGATTTTA+AGG - chr7_1:48570890-48570909 Msa1022390:intron 35.0%
AATTGGGTTATTGCCTAAGT+TGG + chr7_1:48571039-48571058 None:intergenic 35.0%
!! TTGAATGCTGAAAGCATTGA+TGG - chr7_1:48571077-48571096 Msa1022390:intron 35.0%
AACTATCCACAGTAAACTCA+CGG + chr7_1:48571127-48571146 None:intergenic 35.0%
CAATTCATCATTCCAACTCT+TGG + chr7_1:48571165-48571184 None:intergenic 35.0%
GTTGGAATGATGAATTGCTA+AGG - chr7_1:48571168-48571187 Msa1022390:intron 35.0%
CCTTGAGAACTACAATCATT+TGG + chr7_1:48571254-48571273 None:intergenic 35.0%
CCAAATGATTGTAGTTCTCA+AGG - chr7_1:48571251-48571270 Msa1022390:CDS 35.0%
CATTAGTGCAATAAGAAGAC+GGG + chr7_1:48571493-48571512 None:intergenic 35.0%
ATACACCGATATAATTAGGG+GGG + chr7_1:48572244-48572263 None:intergenic 35.0%
TATATGACAAGATAACCTCG+TGG - chr7_1:48572261-48572280 Msa1022390:intron 35.0%
GAATTAGGGTTTGGCAATTA+GGG + chr7_1:48572490-48572509 None:intergenic 35.0%
AGAATTAGGGTTTGGCAATT+AGG + chr7_1:48572491-48572510 None:intergenic 35.0%
GGAGCCAAAACATTAGAATT+AGG + chr7_1:48572505-48572524 None:intergenic 35.0%
!! TCAGTTGTTGTTTCAGCAGT+TGG - chr7_1:48568316-48568335 Msa1022390:intron 40.0%
GTTGGAGATGTATCTTCTGA+TGG - chr7_1:48568334-48568353 Msa1022390:intron 40.0%
GGCACTATTTATCTTGTTGC+TGG - chr7_1:48568355-48568374 Msa1022390:intron 40.0%
!! TATCTTGTTGCTGGTGCTAT+TGG - chr7_1:48568364-48568383 Msa1022390:intron 40.0%
GCTATTGGAATTGCTCTTGT+TGG - chr7_1:48568379-48568398 Msa1022390:intron 40.0%
TTGAACTTTGCTCAGTTGGT+AGG - chr7_1:48568967-48568986 Msa1022390:intron 40.0%
! TGAACTTTGCTCAGTTGGTA+GGG - chr7_1:48568968-48568987 Msa1022390:intron 40.0%
GCATAATATATGCAAGGTCC+GGG - chr7_1:48568996-48569015 Msa1022390:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - chr7_1:48568997-48569016 Msa1022390:intron 40.0%
!!! TTTTTTTTTCGTGGTAGCCG+AGG + chr7_1:48569029-48569048 None:intergenic 40.0%
! AAACTAGTTGTTGTTGGAGG+AGG - chr7_1:48569126-48569145 Msa1022390:intron 40.0%
GCAACGATCAGAATGATGAT+TGG - chr7_1:48569239-48569258 Msa1022390:intron 40.0%
ACGATCAGAATGATGATTGG+TGG - chr7_1:48569242-48569261 Msa1022390:intron 40.0%
! AGAATGATGATTGGTGGACA+AGG - chr7_1:48569248-48569267 Msa1022390:intron 40.0%
! GAATGATGATTGGTGGACAA+GGG - chr7_1:48569249-48569268 Msa1022390:intron 40.0%
AGTGGTGATCAGAGTATATG+TGG - chr7_1:48569325-48569344 Msa1022390:intron 40.0%
!! GAGTATATGTGGTGTCATAG+TGG - chr7_1:48569336-48569355 Msa1022390:intron 40.0%
!! TATATGTGGTGTCATAGTGG+TGG - chr7_1:48569339-48569358 Msa1022390:intron 40.0%
TAGAGGTGATCTACGAAAGT+TGG - chr7_1:48569373-48569392 Msa1022390:intron 40.0%
ATCTACGAAAGTTGGAGTGA+TGG - chr7_1:48569381-48569400 Msa1022390:intron 40.0%
AACGTTTCATGTTACCACCA+AGG + chr7_1:48569470-48569489 None:intergenic 40.0%
ATTGTTTGTGCTCGTTGTGA+TGG - chr7_1:48569796-48569815 Msa1022390:intron 40.0%
! TACGGGGTGTTTATGTCATT+CGG - chr7_1:48569956-48569975 Msa1022390:intron 40.0%
GCGTGAGAAACTTATAGGAT+GGG - chr7_1:48570005-48570024 Msa1022390:intron 40.0%
ACATGCCACAAATAATCAGC+TGG + chr7_1:48570303-48570322 None:intergenic 40.0%
TGTTGTGATATCAGAGAGGT+AGG - chr7_1:48570399-48570418 Msa1022390:intron 40.0%
ACTTCAAACGGAGAGAATTG+AGG - chr7_1:48570459-48570478 Msa1022390:intron 40.0%
GAGGTGAATCATAAGAGGTT+TGG - chr7_1:48570484-48570503 Msa1022390:intron 40.0%
CCAATTTATACCACGGCTAT+TGG + chr7_1:48570838-48570857 None:intergenic 40.0%
CCAATAGCCGTGGTATAAAT+TGG - chr7_1:48570835-48570854 Msa1022390:intron 40.0%
CAAGAGATTGTCACTCTGTT+TGG + chr7_1:48570965-48570984 None:intergenic 40.0%
CTTTCAGCATTCAACAACCA+AGG + chr7_1:48571071-48571090 None:intergenic 40.0%
GTAACAACCATTCCAAGAGT+TGG - chr7_1:48571150-48571169 Msa1022390:intron 40.0%
CATCATTCCAACTCTTGGAA+TGG + chr7_1:48571160-48571179 None:intergenic 40.0%
ATGATTGTAGTTCTCAAGGG+AGG - chr7_1:48571255-48571274 Msa1022390:CDS 40.0%
TGATTGTAGTTCTCAAGGGA+GGG - chr7_1:48571256-48571275 Msa1022390:CDS 40.0%
AATAAGAAGACGGGACAGAT+GGG + chr7_1:48571484-48571503 None:intergenic 40.0%
CAGTCAAAGAAGTGAAGAGA+CGG - chr7_1:48571984-48572003 Msa1022390:intron 40.0%
AAATAGCGTTAAGACGAGCA+CGG + chr7_1:48572013-48572032 None:intergenic 40.0%
CTTTCCCCCCCTAATTATAT+CGG - chr7_1:48572236-48572255 Msa1022390:intron 40.0%
TACACCGATATAATTAGGGG+GGG + chr7_1:48572243-48572262 None:intergenic 40.0%
TTGTATATTCCTTGTCCACG+AGG + chr7_1:48572279-48572298 None:intergenic 40.0%
TTAGGGTAAGCATGTTTGCT+AGG + chr7_1:48572473-48572492 None:intergenic 40.0%
! TTGGGAACATATGGATTGTG+TGG + chr7_1:48572565-48572584 None:intergenic 40.0%
TGGAAAGTGGAGGAGAATAT+TGG + chr7_1:48572672-48572691 None:intergenic 40.0%
CTCAGATTACTCCTAATCGA+AGG - chr7_1:48572823-48572842 Msa1022390:CDS 40.0%
AAGGTCGCTGAAATCTATTG+TGG - chr7_1:48572842-48572861 Msa1022390:CDS 40.0%
! AAGGAGGAAGAGGTTTTTGA+AGG + chr7_1:48572916-48572935 None:intergenic 40.0%
TTCAAAAACCTCTTCCTCCT+TGG - chr7_1:48572915-48572934 Msa1022390:CDS 40.0%
AGTTATCTGCAGAAGAACCA+AGG + chr7_1:48572935-48572954 None:intergenic 40.0%
!! AGGAGGTGTTGGACAACTAT+CGG - chr7_1:48569143-48569162 Msa1022390:intron 45.0%
GAGTGGTGAATAGCAAACAG+TGG - chr7_1:48569165-48569184 Msa1022390:intron 45.0%
! AATGATGATTGGCGGACAGA+TGG - chr7_1:48569214-48569233 Msa1022390:intron 45.0%
! CTATGACCACTAATCGACTC+CGG + chr7_1:48569285-48569304 None:intergenic 45.0%
AGTTGGAGTGATGGTTGACT+TGG - chr7_1:48569390-48569409 Msa1022390:intron 45.0%
!! GTCTTAGTGTTGGTCGTTGA+TGG - chr7_1:48569436-48569455 Msa1022390:intron 45.0%
ATCAGATGCCCAGATTGTGA+TGG - chr7_1:48569706-48569725 Msa1022390:intron 45.0%
!! CAGGGTTTGTTAGGAAAGGT+GGG - chr7_1:48569731-48569750 Msa1022390:intron 45.0%
!! AGGGTTTGTTAGGAAAGGTG+GGG - chr7_1:48569732-48569751 Msa1022390:intron 45.0%
GAGAGCAAATGCAGCAAGAA+AGG - chr7_1:48569762-48569781 Msa1022390:intron 45.0%
TTGTGCTCGTTGTGATGGTT+TGG - chr7_1:48569801-48569820 Msa1022390:intron 45.0%
TGTGCTCGTTGTGATGGTTT+GGG - chr7_1:48569802-48569821 Msa1022390:intron 45.0%
GTACGAGAAACTCATAGGGT+AGG + chr7_1:48569883-48569902 None:intergenic 45.0%
AGTTTCTCGTACGCCCTATT+TGG - chr7_1:48569891-48569910 Msa1022390:intron 45.0%
CGCGTGAGAAACTTATAGGA+TGG - chr7_1:48570004-48570023 Msa1022390:intron 45.0%
TCAAACGGAGAGAATTGAGG+TGG - chr7_1:48570462-48570481 Msa1022390:intron 45.0%
AGGTGGAGGTGAATCATAAG+AGG - chr7_1:48570479-48570498 Msa1022390:intron 45.0%
! TGGCCAAGTTGAAAGCAGAT+GGG + chr7_1:48570917-48570936 None:intergenic 45.0%
! ATGGCCAAGTTGAAAGCAGA+TGG + chr7_1:48570918-48570937 None:intergenic 45.0%
TTGGCCATGCTCGATAAACA+AGG - chr7_1:48570930-48570949 Msa1022390:intron 45.0%
TGGCCATGCTCGATAAACAA+GGG - chr7_1:48570931-48570950 Msa1022390:intron 45.0%
ATTCGTCCGTGAGTTTACTG+TGG - chr7_1:48571118-48571137 Msa1022390:intron 45.0%
GATTGTAGTTCTCAAGGGAG+GGG - chr7_1:48571257-48571276 Msa1022390:CDS 45.0%
CAATAAGAAGACGGGACAGA+TGG + chr7_1:48571485-48571504 None:intergenic 45.0%
CGATATAATTAGGGGGGGAA+AGG + chr7_1:48572238-48572257 None:intergenic 45.0%
ACAAGATAACCTCGTGGACA+AGG - chr7_1:48572267-48572286 Msa1022390:intron 45.0%
CATAGATTCATCTAACGGCC+AGG + chr7_1:48572535-48572554 None:intergenic 45.0%
GGGTGAATATTGGAAAGTGG+AGG + chr7_1:48572682-48572701 None:intergenic 45.0%
GGTGGGTGAATATTGGAAAG+TGG + chr7_1:48572685-48572704 None:intergenic 45.0%
GATTTCAGCGACCTTCGATT+AGG + chr7_1:48572837-48572856 None:intergenic 45.0%
ATGTAGTTGCTATCTCCGAC+CGG - chr7_1:48572880-48572899 Msa1022390:CDS 45.0%
!! TTTTGAAGGCAGAGTGAGTC+CGG + chr7_1:48572902-48572921 None:intergenic 45.0%
TATCTGCAGAAGAACCAAGG+AGG + chr7_1:48572932-48572951 None:intergenic 45.0%
!! AAAAAAAAAAAAAACATATA+TGG + chr7_1:48570244-48570263 None:intergenic 5.0%
!!! AATTTTTTTAAGAATATAAT+TGG - chr7_1:48571399-48571418 Msa1022390:intron 5.0%
! GTTGTTGTTGGAGGAGGTGT+TGG - chr7_1:48569132-48569151 Msa1022390:intron 50.0%
GTGTTGGACAACTATCGGAG+TGG - chr7_1:48569148-48569167 Msa1022390:intron 50.0%
! TGGTGGACAAGGGATTGCAA+TGG - chr7_1:48569259-48569278 Msa1022390:intron 50.0%
!! TGTGGTGTCATAGTGGTGGT+TGG - chr7_1:48569343-48569362 Msa1022390:intron 50.0%
!! GGAGTGATGGTTGACTTGGT+CGG - chr7_1:48569394-48569413 Msa1022390:intron 50.0%
!! GTTGGTGGTGGTCTTAGTGT+TGG - chr7_1:48569426-48569445 Msa1022390:intron 50.0%
!! CGTTGATGGTCATCGATCCT+TGG - chr7_1:48569450-48569469 Msa1022390:intron 50.0%
TGATGGTCATCGATCCTTGG+TGG - chr7_1:48569453-48569472 Msa1022390:intron 50.0%
ACCCTGCTCCATCACAATCT+GGG + chr7_1:48569717-48569736 None:intergenic 50.0%
AACCCTGCTCCATCACAATC+TGG + chr7_1:48569718-48569737 None:intergenic 50.0%
! GTGATGGAGCAGGGTTTGTT+AGG - chr7_1:48569722-48569741 Msa1022390:intron 50.0%
!! GGAGCAGGGTTTGTTAGGAA+AGG - chr7_1:48569727-48569746 Msa1022390:intron 50.0%
!! GCAGGGTTTGTTAGGAAAGG+TGG - chr7_1:48569730-48569749 Msa1022390:intron 50.0%
GGGCGTACGAGAAACTCATA+GGG + chr7_1:48569887-48569906 None:intergenic 50.0%
AGGGCGTACGAGAAACTCAT+AGG + chr7_1:48569888-48569907 None:intergenic 50.0%
AGGGCGCGTGAGAAACTTAT+AGG - chr7_1:48570000-48570019 Msa1022390:intron 50.0%
AACGGAGAGAATTGAGGTGG+AGG - chr7_1:48570465-48570484 Msa1022390:intron 50.0%
GGACCCATCTGCTTTCAACT+TGG - chr7_1:48570911-48570930 Msa1022390:intron 50.0%
! CCACCCTTGTTTATCGAGCA+TGG + chr7_1:48570937-48570956 None:intergenic 50.0%
CCATGCTCGATAAACAAGGG+TGG - chr7_1:48570934-48570953 Msa1022390:intron 50.0%
!!! GTTTTGGCTCCAAATCGTCC+TGG - chr7_1:48572514-48572533 Msa1022390:intron 50.0%
ATCTAACGGCCAGGACGATT+TGG + chr7_1:48572526-48572545 None:intergenic 50.0%
!! CGGTAGTGGTGGGTGAATAT+TGG + chr7_1:48572692-48572711 None:intergenic 50.0%
! AGAGAGAGTTCGGTAGTGGT+GGG + chr7_1:48572702-48572721 None:intergenic 50.0%
ATGGAGAGAGAGTTCGGTAG+TGG + chr7_1:48572706-48572725 None:intergenic 50.0%
GAGGCAATGGAGAGAGAGTT+CGG + chr7_1:48572712-48572731 None:intergenic 50.0%
AATGTGATCGCCGCAACTGA+CGG + chr7_1:48572758-48572777 None:intergenic 50.0%
CAGAAGAACCAAGGAGGAAG+AGG + chr7_1:48572926-48572945 None:intergenic 50.0%
AAGGTCCGGGGTTCAAACCT+CGG - chr7_1:48569009-48569028 Msa1022390:intron 55.0%
GGACAAGGGATTGCAATGGC+CGG - chr7_1:48569263-48569282 Msa1022390:intron 55.0%
CAATGGCCGGAGTCGATTAG+TGG - chr7_1:48569276-48569295 Msa1022390:intron 55.0%
! GGTGTCATAGTGGTGGTTGG+TGG - chr7_1:48569346-48569365 Msa1022390:intron 55.0%
!! GTCATAGTGGTGGTTGGTGG+TGG - chr7_1:48569349-48569368 Msa1022390:intron 55.0%
!! TGGTGGTTGGTGGTGGTTAG+AGG - chr7_1:48569356-48569375 Msa1022390:intron 55.0%
!! GTGATGGTTGACTTGGTCGG+TGG - chr7_1:48569397-48569416 Msa1022390:intron 55.0%
!! TTGACTTGGTCGGTGGTGAG+TGG - chr7_1:48569404-48569423 Msa1022390:intron 55.0%
! TGCCCAGATTGTGATGGAGC+AGG - chr7_1:48569712-48569731 Msa1022390:intron 55.0%
! GCCCAGATTGTGATGGAGCA+GGG - chr7_1:48569713-48569732 Msa1022390:intron 55.0%
! AATGGTGGTGCCAATAGCCG+TGG - chr7_1:48570825-48570844 Msa1022390:intron 55.0%
! GAGAGAGAGTTCGGTAGTGG+TGG + chr7_1:48572703-48572722 None:intergenic 55.0%
GTGGAAGATGAGACGACGGA+GGG + chr7_1:48572734-48572753 None:intergenic 55.0%
ATCTTCCACGCCGTCAGTTG+CGG - chr7_1:48572745-48572764 Msa1022390:CDS 55.0%
GGTAGCCGAGGTTTGAACCC+CGG + chr7_1:48569017-48569036 None:intergenic 60.0%
CTTGGTCGGTGGTGAGTGGT+TGG - chr7_1:48569408-48569427 Msa1022390:intron 60.0%
GAAGATGAGACGACGGAGGG+AGG + chr7_1:48572731-48572750 None:intergenic 60.0%
CGTGGAAGATGAGACGACGG+AGG + chr7_1:48572735-48572754 None:intergenic 60.0%
CGGCGTGGAAGATGAGACGA+CGG + chr7_1:48572738-48572757 None:intergenic 60.0%
GAAGGCAGAGTGAGTCCGGT+CGG + chr7_1:48572898-48572917 None:intergenic 60.0%
GGTCGGTGGTGAGTGGTTGG+TGG - chr7_1:48569411-48569430 Msa1022390:intron 65.0%
!! CGGTGGTGAGTGGTTGGTGG+TGG - chr7_1:48569414-48569433 Msa1022390:intron 65.0%
GAGACGACGGAGGGAGGCAA+TGG + chr7_1:48572725-48572744 None:intergenic 65.0%
GATCGCCGCAACTGACGGCG+TGG + chr7_1:48572753-48572772 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 48568078 48572959 48568078 ID=Msa1022390;Name=Msa1022390
chr7_1 mRNA 48568078 48572959 48568078 ID=Msa1022390-mRNA-1;Parent=Msa1022390;Name=Msa1022390-mRNA-1;_AED=0.43;_eAED=0.43;_QI=7|0|0.25|0.5|1|1|4|0|257
chr7_1 exon 48568078 48568209 48568078 ID=Msa1022390-mRNA-1:exon:9523;Parent=Msa1022390-mRNA-1
chr7_1 exon 48571200 48571318 48571200 ID=Msa1022390-mRNA-1:exon:9522;Parent=Msa1022390-mRNA-1
chr7_1 exon 48571667 48571836 48571667 ID=Msa1022390-mRNA-1:exon:9521;Parent=Msa1022390-mRNA-1
chr7_1 exon 48572600 48572959 48572600 ID=Msa1022390-mRNA-1:exon:9520;Parent=Msa1022390-mRNA-1
chr7_1 five_prime_UTR 48572953 48572959 48572953 ID=Msa1022390-mRNA-1:five_prime_utr;Parent=Msa1022390-mRNA-1
chr7_1 CDS 48572600 48572952 48572600 ID=Msa1022390-mRNA-1:cds;Parent=Msa1022390-mRNA-1
chr7_1 CDS 48571667 48571836 48571667 ID=Msa1022390-mRNA-1:cds;Parent=Msa1022390-mRNA-1
chr7_1 CDS 48571200 48571318 48571200 ID=Msa1022390-mRNA-1:cds;Parent=Msa1022390-mRNA-1
chr7_1 CDS 48568078 48568209 48568078 ID=Msa1022390-mRNA-1:cds;Parent=Msa1022390-mRNA-1
Gene Sequence

>Msa1022390

ATGCTACGTGTCATGTTAATATCCAATCCAACAATACCTCAACAAAAAAAAAAACAACAATTGTTCATTATTCTTAATTCTCACTTTCTTCACTTTGTTTGGTTACATTGTATTAGAAACATGGCATCCATGACCTTGAACACAATCATTCCCAATGTTACAATTTCCAACAACACTAAACTCTCATTTGGAGGCTCAACAAATGTGTCATGTAACAAGAAGAGATCTTCATCAGTTGTTGTTTCAGCAGTTGGAGATGTATCTTCTGATGGCACTATTTATCTTGTTGCTGGTGCTATTGGAATTGCTCTTGTTGGAACTGCATTTCCTATCATCTTCTCACGTAAAGACACAGTGATAATTGGCAATGATGATTGGCGGACAGATGGTTGCAACGATCAGAATGATGATTGGTGGACAAGGGATTGCAATGGCCGGAGTCGATTAGTGGTCATAGTAGTTTTAAATGGTGATCACAGTGGTGATCAGAGTATATGTGGTGTCATAGTGGTGGTTGGTGGTGATTGTGATGGAGCAGGGTTTGTTAGGAAAGGTGGGGTGACATTGAGAGCAAATGCAGCAAGAAAGGATCAAACTCAAATTGTTTGTGCTCGTTGTGATGGTTTGGGAAAACTTAACCAAATTACTCCTAATCGAAGGTCGCTGAAATCTATTGTGGTTGTTGAAATTATAGATGTAGTTGCTATCTCCGACCGGACTCACTCTGCCTTCAAAAACCTCTTCCTCCTTGGTTCTTCTGCAGATAACTTCTAA

Protein sequence

>Msa1022390

MLRVMLISNPTIPQQKKKQQLFIILNSHFLHFVWLHCIRNMASMTLNTIIPNVTISNNTKLSFGGSTNVSCNKKRSSSVVVSAVGDVSSDGTIYLVAGAIGIALVGTAFPIIFSRKDTVIIGNDDWRTDGCNDQNDDWWTRDCNGRSRLVVIVVLNGDHSGDQSICGVIVVVGGDCDGAGFVRKGGVTLRANAARKDQTQIVCARCDGLGKLNQITPNRRSLKSIVVVEIIDVVAISDRTHSAFKNLFLLGSSADNF*