AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044380 MtrunA17_Chr1g0210971 99.482 386 2 0 1 386 1 386 0.0 792
Msa0044380 MtrunA17_Chr4g0004681 33.448 290 166 5 60 349 43 305 1.63e-39 142
Msa0044380 MtrunA17_Chr4g0004711 33.798 287 160 7 66 349 49 308 5.44e-39 141
Msa0044380 MtrunA17_Chr4g0004721 32.990 291 169 6 60 349 44 309 1.69e-37 137
Msa0044380 MtrunA17_Chr4g0000511 34.228 298 173 7 50 346 117 392 3.53e-35 136
Msa0044380 MtrunA17_Chr1g0208141 33.564 289 162 8 63 346 96 359 1.30e-29 120
Msa0044380 MtrunA17_Chr4g0004741 32.990 291 169 7 60 349 43 308 5.57e-27 109
Msa0044380 MtrunA17_Chr8g0351141 27.344 256 166 2 94 349 86 321 6.98e-27 109
Msa0044380 MtrunA17_Chr8g0351121 27.419 248 157 4 94 340 120 345 1.33e-26 108
Msa0044380 MtrunA17_Chr8g0351111 28.571 259 151 8 94 347 83 312 2.41e-26 107
Msa0044380 MtrunA17_Chr2g0331641 29.771 262 157 3 91 349 72 309 6.62e-25 103
Msa0044380 MtrunA17_Chr6g0450811 26.809 235 151 6 94 325 129 345 2.70e-11 64.7
Msa0044380 MtrunA17_Chr7g0248631 24.364 275 181 7 100 365 88 344 6.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044380 AT1G68010.1 88.860 386 43 0 1 386 1 386 0.0 697
Msa0044380 AT1G68010.2 88.630 387 43 1 1 386 1 387 0.0 692
Msa0044380 AT1G68010.3 90.909 341 31 0 1 341 1 341 0.0 625
Msa0044380 AT4G34200.1 34.737 285 164 6 63 346 102 365 7.37e-34 132
Msa0044380 AT1G17745.1 32.558 344 192 11 10 346 76 386 1.41e-33 132
Msa0044380 AT1G79870.1 31.373 306 172 8 45 346 34 305 7.87e-33 125
Msa0044380 AT3G19480.1 33.221 298 176 7 50 346 75 350 1.71e-30 123
Msa0044380 AT1G17745.2 30.435 368 195 11 10 346 76 413 6.95e-29 119
Msa0044380 AT1G79870.2 29.180 305 161 7 45 346 34 286 6.75e-27 108
Msa0044380 AT1G12550.1 27.413 259 163 5 94 350 82 317 8.61e-26 106
Msa0044380 AT2G45630.2 25.723 311 201 6 39 347 45 327 1.06e-23 100
Msa0044380 AT1G72190.1 26.966 267 173 8 88 349 117 366 1.71e-15 77.8

Find 133 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTAGCATCGATTTAA+TGG 0.180188 1_1:+75935123 Msa0044380:three_prime_UTR
TGTATCCATCCTCACTTATA+AGG 0.250595 1_1:+75935190 Msa0044380:three_prime_UTR
TGATGATGTGTAGAGGATTT+TGG 0.254421 1_1:-75930964 None:intergenic
TCACATTAACTTCAAATAAA+AGG 0.264985 1_1:+75930939 Msa0044380:five_prime_UTR
AGCATATGGTGCTTTCTTAA+AGG 0.276108 1_1:+75933391 Msa0044380:intron
CTTGCATTCTTCTGATCTAA+TGG 0.300930 1_1:-75934849 None:intergenic
AACCAGTTTCAATTCAAGTA+TGG 0.311416 1_1:+75931170 Msa0044380:CDS
GTTGTAGTTTATTGAGCAAT+TGG 0.320233 1_1:+75935074 Msa0044380:three_prime_UTR
GATAAGTGTGATGGAGTTAT+TGG 0.337723 1_1:+75931452 Msa0044380:CDS
AGGAAAAGTGTTAATAATAA+AGG 0.340766 1_1:+75934963 Msa0044380:three_prime_UTR
TCTAAATTCATCCATTTCAT+TGG 0.349195 1_1:+75931020 Msa0044380:five_prime_UTR
GTCAATGCTGCAAACAAATA+TGG 0.354110 1_1:+75932043 Msa0044380:CDS
TTCCATACTTGAATTGAAAC+TGG 0.356787 1_1:-75931172 None:intergenic
ATTGAGCAATTGGGAGAGTT+GGG 0.365636 1_1:+75935084 Msa0044380:three_prime_UTR
AGGCAAAGCTTTCAGTAATA+TGG 0.369024 1_1:+75931997 Msa0044380:CDS
AGTGCAACTTCATCAATAAC+AGG 0.376624 1_1:-75933781 None:intergenic
GGACAAACAGTTGGTGTTAT+CGG 0.377915 1_1:+75932677 Msa0044380:CDS
TTTCTGCTGTATCAGGTTGA+AGG 0.378719 1_1:+75933225 Msa0044380:intron
CAAGCTTTGAAGGCTCTTGT+AGG 0.382688 1_1:-75934659 None:intergenic
TATGCACACACAAGCTTTGA+AGG 0.385122 1_1:-75934669 None:intergenic
AACTCTAACCTTCTTCATCT+TGG 0.389875 1_1:-75933641 None:intergenic
TTCTCTGCTTTGAGCAAAGC+AGG 0.391693 1_1:+75931974 Msa0044380:CDS
TGTTTATCTGGCAGATTTGT+TGG 0.395143 1_1:+75932641 Msa0044380:intron
AGATTGATCCAACGAGTTCC+AGG 0.398695 1_1:-75931235 None:intergenic
GATTAGTCTTCATCCTATCT+TGG 0.399037 1_1:+75933579 Msa0044380:intron
CAGTATGGTTTGATGCCAAT+AGG 0.402824 1_1:+75934413 Msa0044380:CDS
GTTATCGGAGCTGGCCGTAT+TGG 0.403616 1_1:+75932692 Msa0044380:CDS
TATGTTTCTGACCAATGAAA+TGG 0.405529 1_1:-75931031 None:intergenic
AAGAAATGGCTCCACCCTAT+TGG 0.407299 1_1:-75934428 None:intergenic
GGTAGAGATCGAAGTATATC+AGG 0.410543 1_1:-75933260 None:intergenic
AAAACAAATTGTTCTTATTG+AGG 0.414112 1_1:+75934898 Msa0044380:three_prime_UTR
AGATCAAGGGCTACCCAGTA+TGG 0.420729 1_1:+75934398 Msa0044380:CDS
CTATTGGCATCAAACCATAC+TGG 0.422550 1_1:-75934412 None:intergenic
CGTAGGCCTTGATGTGTTTG+AGG 0.424117 1_1:+75933837 Msa0044380:CDS
ATACACTACAGCTTTGAAAC+TGG 0.431086 1_1:-75934615 None:intergenic
TTCTTCAACTCTGCAAGTCC+AGG 0.432293 1_1:-75933964 None:intergenic
TATTGAGCAATTGGGAGAGT+TGG 0.433084 1_1:+75935083 Msa0044380:three_prime_UTR
TTCTTACTATATCTGCCTCT+TGG 0.435870 1_1:-75933469 None:intergenic
TTGTAGTTTATTGAGCAATT+GGG 0.437297 1_1:+75935075 Msa0044380:three_prime_UTR
TGACTTTGGCAGCTGCTAGA+AGG 0.446003 1_1:+75932422 Msa0044380:CDS
GCTTGCAGCTTCACTGACTT+TGG 0.451429 1_1:+75932408 Msa0044380:CDS
GAAGATATCATTGCTTTGAT+TGG 0.457462 1_1:+75931428 Msa0044380:CDS
ACAATGCTTGGGCATGCAGC+TGG 0.459559 1_1:-75934469 None:intergenic
GGTGCTTTCTTAAAGGCAAA+TGG 0.460883 1_1:+75933398 Msa0044380:CDS
ACTTCAAAAGTACATAAATC+AGG 0.460989 1_1:+75934943 Msa0044380:three_prime_UTR
AAACACCAGTAACTTGGAAA+AGG 0.465743 1_1:+75933423 Msa0044380:CDS
TATAATACAGGGCAAGATCA+AGG 0.470540 1_1:+75934384 Msa0044380:intron
ACCTTGACTCACTGATTCAA+TGG 0.471925 1_1:+75931144 Msa0044380:exon
CTTGTTGACGAGGTGGTAAG+TGG 0.472748 1_1:-75933608 None:intergenic
AGTATGGTTTGATGCCAATA+GGG 0.473886 1_1:+75934414 Msa0044380:CDS
ACACATTGCTTCTGCTTCCA+AGG 0.479271 1_1:+75934002 Msa0044380:CDS
ATTTAATGGTAGAATGTAGT+AGG 0.480449 1_1:+75935137 Msa0044380:three_prime_UTR
AACAAATATGGTGTTGCTGT+TGG 0.490286 1_1:+75932055 Msa0044380:CDS
TTGGAAAAGGGCAGCATCCA+TGG 0.493217 1_1:+75933436 Msa0044380:CDS
ATGGTGAAACACCAGTAACT+TGG 0.493816 1_1:+75933417 Msa0044380:CDS
TTCTGCTGTATCAGGTTGAA+GGG 0.494245 1_1:+75933226 Msa0044380:intron
ATTCAAGTATGGAACCCAAA+TGG 0.502702 1_1:+75931181 Msa0044380:CDS
GCTTTCAGTAATATGGCTGT+TGG 0.504769 1_1:+75932004 Msa0044380:CDS
GCAAGTCCAGGTTTCATGTA+GGG 0.504842 1_1:-75933952 None:intergenic
GTATCCATCCTCACTTATAA+GGG 0.511831 1_1:+75935191 Msa0044380:three_prime_UTR
CGAGTCTTTCCTTGTTGACG+AGG 0.512210 1_1:-75933618 None:intergenic
ACAGTTGGTGTTATCGGAGC+TGG 0.526985 1_1:+75932683 Msa0044380:CDS
GCAGATGAGTTCATGAGGGC+AGG 0.528261 1_1:+75932454 Msa0044380:CDS
GCAGTGGACTCGTGAGGGAA+TGG 0.533885 1_1:+75934242 Msa0044380:intron
ATCCTCACTTATAAGGGAGG+AGG 0.534862 1_1:+75935197 Msa0044380:three_prime_UTR
AACACCAGTAACTTGGAAAA+GGG 0.538959 1_1:+75933424 Msa0044380:CDS
TTGCATAAGCTGATCCAATA+CGG 0.539584 1_1:-75932706 None:intergenic
TCAAGGCCTACGCGAAACAT+TGG 0.540440 1_1:-75933826 None:intergenic
AAAGCTGTAGTGTATGCGTA+CGG 0.544002 1_1:+75934623 Msa0044380:exon
GAAGTTAATGTGAGGTGAGG+AGG 0.544804 1_1:-75930929 None:intergenic
GTAGTAGTGATTGAGTGATT+CGG 0.548176 1_1:-75931077 None:intergenic
TGCAAGTCCAGGTTTCATGT+AGG 0.550331 1_1:-75933953 None:intergenic
CTCTTGGAGAACCTCGTCCA+TGG 0.559767 1_1:-75933453 None:intergenic
GTCTTTCCTTGTTGACGAGG+TGG 0.560436 1_1:-75933615 None:intergenic
TCCTCACTTATAAGGGAGGA+GGG 0.561330 1_1:+75935198 Msa0044380:three_prime_UTR
GCTAGCAGCTCTAAATGTGC+TGG 0.561333 1_1:+75934269 Msa0044380:CDS
AAGCTGTAGTGTATGCGTAC+GGG 0.565234 1_1:+75934624 Msa0044380:exon
GTGTGATGGAGTTATTGGAC+AGG 0.566011 1_1:+75931457 Msa0044380:CDS
CAATTACCTCAAACACATCA+AGG 0.566746 1_1:-75933843 None:intergenic
TCCTCCCTTATAAGTGAGGA+TGG 0.567206 1_1:-75935195 None:intergenic
GGGCAGGATTATATGATGGC+TGG 0.567472 1_1:+75932470 Msa0044380:CDS
TATTGATGAAGTTGCACTTG+TGG 0.567753 1_1:+75933786 Msa0044380:CDS
ATTCTTATAAACTGCAGTAG+AGG 0.567954 1_1:+75933757 Msa0044380:CDS
AGTCAAGAAAGAACATGTAA+AGG 0.568166 1_1:+75935052 Msa0044380:three_prime_UTR
CACTTACCACCTCGTCAACA+AGG 0.569943 1_1:+75933609 Msa0044380:CDS
GTTAGCACAAAATCAATGCC+TGG 0.572324 1_1:+75931217 Msa0044380:CDS
TTTGAAGTTAATGTGAGGTG+AGG 0.578455 1_1:-75930932 None:intergenic
ATTTGTTGGAAACTTGCTCA+AGG 0.580236 1_1:+75932655 Msa0044380:CDS
GCCATTGAATCAGTGAGTCA+AGG 0.580492 1_1:-75931145 None:intergenic
ATGAGGGCAGGATTATATGA+TGG 0.580751 1_1:+75932466 Msa0044380:CDS
TTTGCAGCTGACTGAAGACT+GGG 0.581414 1_1:+75931940 Msa0044380:intron
ATCAGCTTATGCAAGAATGA+TGG 0.584719 1_1:+75932715 Msa0044380:CDS
AGACTAGAAAAGTTTGTCAC+AGG 0.585130 1_1:+75933291 Msa0044380:CDS
TTATTGAATTCAGATATGTA+CGG 0.587056 1_1:+75931382 Msa0044380:intron
GAATACTTTAAAATAAAATG+AGG 0.587157 1_1:+75934788 Msa0044380:three_prime_UTR
AATCAATGCCTGGAACTCGT+TGG 0.587209 1_1:+75931227 Msa0044380:CDS
TTGATTGGTGATAAGTGTGA+TGG 0.588494 1_1:+75931443 Msa0044380:CDS
GGGAGTTCTCACAGAGACTA+CGG 0.589946 1_1:+75932381 Msa0044380:intron
TTTGTTGGAAACTTGCTCAA+GGG 0.594105 1_1:+75932656 Msa0044380:CDS
GATGAGCCCTACATGAAACC+TGG 0.594414 1_1:+75933946 Msa0044380:CDS
ATAATACAGGGCAAGATCAA+GGG 0.598270 1_1:+75934385 Msa0044380:intron
AAGACTCGCCAAGATGAAGA+AGG 0.601821 1_1:+75933633 Msa0044380:CDS
TTGCTCAAGGGACAAACAGT+TGG 0.607085 1_1:+75932668 Msa0044380:CDS
TATTGGCATCAAACCATACT+GGG 0.608430 1_1:-75934411 None:intergenic
ACAAAGTGCAGTGTTGATGA+CGG 0.610784 1_1:+75934986 Msa0044380:three_prime_UTR
AGCTTGTGTGTGCATACTGA+TGG 0.614699 1_1:+75934676 Msa0044380:three_prime_UTR
TCTTCCTCATCAAGGCAATG+AGG 0.619889 1_1:-75935164 None:intergenic
TTGAGGCAGATGAGTTCATG+AGG 0.619999 1_1:+75932449 Msa0044380:CDS
ATACACATTCTTCCTCATCA+AGG 0.621066 1_1:-75935172 None:intergenic
AAGGGCAGCATCCATGGACG+AGG 0.621564 1_1:+75933442 Msa0044380:CDS
CCTCACTTATAAGGGAGGAG+GGG 0.621943 1_1:+75935199 Msa0044380:three_prime_UTR
TCCATCCTCACTTATAAGGG+AGG 0.634904 1_1:+75935194 Msa0044380:three_prime_UTR
CCCCTCCTCCCTTATAAGTG+AGG 0.635596 1_1:-75935199 None:intergenic
GAAAATCCAATGTTTCGCGT+AGG 0.638637 1_1:+75933820 Msa0044380:CDS
TGAGCCTCATTGCCTTGATG+AGG 0.640353 1_1:+75935160 Msa0044380:three_prime_UTR
AGCTGCTAGAAGGATAGTTG+AGG 0.641144 1_1:+75932432 Msa0044380:CDS
ATGGTTTGATGCCAATAGGG+TGG 0.649631 1_1:+75934417 Msa0044380:CDS
TGAGGCAGATGAGTTCATGA+GGG 0.651617 1_1:+75932450 Msa0044380:CDS
AGTGATTCGGTGTGAAACAG+TGG 0.663359 1_1:-75931064 None:intergenic
TCTGCTTTGAGCAAAGCAGG+AGG 0.664158 1_1:+75931977 Msa0044380:CDS
CATGGACGAGGTTCTCCAAG+AGG 0.666582 1_1:+75933454 Msa0044380:CDS
TGTGAGGTGAGGAGGACATG+AGG 0.671366 1_1:-75930921 None:intergenic
ATGCTTGGGCATGCAGCTGG+AGG 0.674932 1_1:-75934466 None:intergenic
CATGGAATGATGATGTGTAG+AGG 0.682056 1_1:-75930971 None:intergenic
GTGTTTGCAGTGGACTCGTG+AGG 0.684941 1_1:+75934236 Msa0044380:intron
TGTTTGCAGTGGACTCGTGA+GGG 0.684969 1_1:+75934237 Msa0044380:intron
TTGTGTGTGCATACTGATGG+TGG 0.686507 1_1:+75934679 Msa0044380:three_prime_UTR
AGCAATGTGTGGTACTACAA+CGG 0.690341 1_1:-75933989 None:intergenic
GCATACTGATGGTGGCAGTG+TGG 0.695956 1_1:+75934687 Msa0044380:three_prime_UTR
GTGCAACTTCATCAATAACA+GGG 0.700609 1_1:-75933780 None:intergenic
ATTGAATCAGTGAGTCAAGG+TGG 0.706038 1_1:-75931142 None:intergenic
TTGCAGCTGACTGAAGACTG+GGG 0.715483 1_1:+75931941 Msa0044380:intron
TTGGAAGCAGAAGCAATGTG+TGG 0.717012 1_1:-75934000 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTAAATTAT+AGG + chr1_1:75931568-75931587 Msa0044380:intron 0.0%
!!! TTTTAAATTATAGGTTTTTT+TGG + chr1_1:75931577-75931596 Msa0044380:intron 10.0%
!!! CTAAATAACTATTTTTTTAT+TGG + chr1_1:75931665-75931684 Msa0044380:intron 10.0%
!!! AGTTTAAATTTTAACATAAG+AGG + chr1_1:75931843-75931862 Msa0044380:intron 15.0%
!!! ATTTACATTTTAAATGTATG+TGG + chr1_1:75932137-75932156 Msa0044380:intron 15.0%
!! TCATCATAAACTAAATTATT+AGG - chr1_1:75933548-75933567 None:intergenic 15.0%
!! TTAGAATTAAATTAAGTACA+GGG + chr1_1:75934084-75934103 Msa0044380:intron 15.0%
!!! ATTTTATTTTAAAGTATTCC+TGG - chr1_1:75934787-75934806 None:intergenic 15.0%
!!! GAATACTTTAAAATAAAATG+AGG + chr1_1:75934788-75934807 Msa0044380:three_prime_UTR 15.0%
!!! TTTTATTTGAAGTTAATGTG+AGG - chr1_1:75930940-75930959 None:intergenic 20.0%
!! TCACATTAACTTCAAATAAA+AGG + chr1_1:75930939-75930958 Msa0044380:five_prime_UTR 20.0%
!! TTATTGAATTCAGATATGTA+CGG + chr1_1:75931382-75931401 Msa0044380:intron 20.0%
!! AATCTTAAGTAAAACAAGAA+AGG - chr1_1:75932521-75932540 None:intergenic 20.0%
!! AGTTGCTAATAAAAATTACT+TGG + chr1_1:75932830-75932849 Msa0044380:intron 20.0%
!!! ATTCTAAGTTAACAGATTTT+TGG - chr1_1:75933138-75933157 None:intergenic 20.0%
!! ATCCATTTAAACAAATCATA+GGG - chr1_1:75933322-75933341 None:intergenic 20.0%
!! TATCCATTTAAACAAATCAT+AGG - chr1_1:75933323-75933342 None:intergenic 20.0%
!! ATTATTAGGAATGATCAAAT+GGG - chr1_1:75933534-75933553 None:intergenic 20.0%
!! AATTATTAGGAATGATCAAA+TGG - chr1_1:75933535-75933554 None:intergenic 20.0%
!!! ACCATGTGATTTTTTTTATT+AGG + chr1_1:75933924-75933943 Msa0044380:intron 20.0%
!! TCCTAATAAAAAAAATCACA+TGG - chr1_1:75933928-75933947 None:intergenic 20.0%
!! ATAACTAAAATTGATTACCT+TGG - chr1_1:75934022-75934041 None:intergenic 20.0%
!! CTTAGAATTAAATTAAGTAC+AGG + chr1_1:75934083-75934102 Msa0044380:intron 20.0%
!!! TGTGAAAAGAATCTTTTTTT+AGG - chr1_1:75934176-75934195 None:intergenic 20.0%
!!! GTTTTATTTGCAACAATATT+TGG - chr1_1:75934542-75934561 None:intergenic 20.0%
!!! TATATTTTATTTCTAATCGC+AGG + chr1_1:75934588-75934607 Msa0044380:intron 20.0%
!!! TTATAATTTTCAATTGAACC+AGG + chr1_1:75934766-75934785 Msa0044380:three_prime_UTR 20.0%
!! AAAACAAATTGTTCTTATTG+AGG + chr1_1:75934898-75934917 Msa0044380:three_prime_UTR 20.0%
!!! AGGAAAAGTGTTAATAATAA+AGG + chr1_1:75934963-75934982 Msa0044380:three_prime_UTR 20.0%
!!! TTTAGAAGACTTTGACTTTT+TGG - chr1_1:75931006-75931025 None:intergenic 25.0%
! TCTAAATTCATCCATTTCAT+TGG + chr1_1:75931020-75931039 Msa0044380:five_prime_UTR 25.0%
!!! TATGTGGTTTTTTTTACTTC+TGG + chr1_1:75931603-75931622 Msa0044380:intron 25.0%
!!! ATGTGGTTTTTTTTACTTCT+GGG + chr1_1:75931604-75931623 Msa0044380:intron 25.0%
! ATATTGTGAATCAAGAATAG+AGG + chr1_1:75931768-75931787 Msa0044380:intron 25.0%
! TATTGTGAATCAAGAATAGA+GGG + chr1_1:75931769-75931788 Msa0044380:intron 25.0%
! TTTAACATAAAAGCAACTCT+CGG + chr1_1:75931882-75931901 Msa0044380:intron 25.0%
!!! GAAGTTATTTGTTATAACCT+TGG + chr1_1:75932332-75932351 Msa0044380:intron 25.0%
! TTCATATCATTCATTGTGTT+TGG + chr1_1:75932356-75932375 Msa0044380:intron 25.0%
!!! GTTTATTTTTCATACAGATG+AGG - chr1_1:75932499-75932518 None:intergenic 25.0%
!!! CAGTTTTGATTTTGTTTATC+TGG + chr1_1:75932629-75932648 Msa0044380:intron 25.0%
! AATGCAAAACTGAAATGTAT+GGG - chr1_1:75932748-75932767 None:intergenic 25.0%
! GACTTGGCATAAAATTAAAA+CGG + chr1_1:75932865-75932884 Msa0044380:intron 25.0%
! AAAAAAAAAAGAGAAGCTAG+TGG + chr1_1:75933041-75933060 Msa0044380:intron 25.0%
! ATTGTCACGATATTCAAATT+TGG + chr1_1:75933091-75933110 Msa0044380:intron 25.0%
!!! TAAGTTAACAGATTTTTGGA+AGG - chr1_1:75933134-75933153 None:intergenic 25.0%
! TAATGATATATTCTTATCGC+AGG + chr1_1:75933729-75933748 Msa0044380:intron 25.0%
!!! GAAAAGAATCTTTTTTTAGG+TGG - chr1_1:75934173-75934192 None:intergenic 25.0%
! AATTTACATTGATCAAACGT+AGG - chr1_1:75934328-75934347 None:intergenic 25.0%
! GTGAAAAATGTTATTACTCA+GGG - chr1_1:75934506-75934525 None:intergenic 25.0%
!! ACTTCAAAAGTACATAAATC+AGG + chr1_1:75934943-75934962 Msa0044380:three_prime_UTR 25.0%
!! TGATGCATGTAATGAATTTT+AGG + chr1_1:75935027-75935046 Msa0044380:three_prime_UTR 25.0%
! TTGTAGTTTATTGAGCAATT+GGG + chr1_1:75935075-75935094 Msa0044380:three_prime_UTR 25.0%
! ATTTAATGGTAGAATGTAGT+AGG + chr1_1:75935137-75935156 Msa0044380:three_prime_UTR 25.0%
! TATGTTTCTGACCAATGAAA+TGG - chr1_1:75931034-75931053 None:intergenic 30.0%
AACCAGTTTCAATTCAAGTA+TGG + chr1_1:75931170-75931189 Msa0044380:CDS 30.0%
TTCCATACTTGAATTGAAAC+TGG - chr1_1:75931175-75931194 None:intergenic 30.0%
TTCTTTGTTGAGTCAATCAA+TGG + chr1_1:75931337-75931356 Msa0044380:intron 30.0%
GAAGATATCATTGCTTTGAT+TGG + chr1_1:75931428-75931447 Msa0044380:CDS 30.0%
!!! TAGGTTTTTTTGGTTGTATG+TGG + chr1_1:75931587-75931606 Msa0044380:intron 30.0%
!!! TGTGGTTTTTTTTACTTCTG+GGG + chr1_1:75931605-75931624 Msa0044380:intron 30.0%
ATTGTGAATCAAGAATAGAG+GGG + chr1_1:75931770-75931789 Msa0044380:intron 30.0%
! ATGTACTAAAGTGTTTATCG+AGG + chr1_1:75931815-75931834 Msa0044380:intron 30.0%
TTAACATAAAAGCAACTCTC+GGG + chr1_1:75931883-75931902 Msa0044380:intron 30.0%
TGTTAGTGTCAAAATGATAC+AGG - chr1_1:75932110-75932129 None:intergenic 30.0%
TCAAAGTTATCATGTATGCT+TGG + chr1_1:75932184-75932203 Msa0044380:intron 30.0%
ATGTATATGTGATGCTGAAT+CGG + chr1_1:75932254-75932273 Msa0044380:intron 30.0%
!! AATAGTGATTAGTCTTGATG+AGG + chr1_1:75932310-75932329 Msa0044380:intron 30.0%
CAATGAATGATATGAAACCA+AGG - chr1_1:75932352-75932371 None:intergenic 30.0%
TATCATTCATTGTGTTTGGT+AGG + chr1_1:75932360-75932379 Msa0044380:intron 30.0%
ATCATTCATTGTGTTTGGTA+GGG + chr1_1:75932361-75932380 Msa0044380:intron 30.0%
CAATGCAAAACTGAAATGTA+TGG - chr1_1:75932749-75932768 None:intergenic 30.0%
!! TTGGTTTTTGAATACTGACT+TGG + chr1_1:75932849-75932868 Msa0044380:intron 30.0%
!!! ACTTTTCTAGTCTTGTAGAT+TGG - chr1_1:75933284-75933303 None:intergenic 30.0%
!! GTCCCTATGATTTGTTTAAA+TGG + chr1_1:75933317-75933336 Msa0044380:intron 30.0%
! TTTTTCCTTATTGCAGCATA+TGG + chr1_1:75933377-75933396 Msa0044380:intron 30.0%
!!! TAAGTGGTTTTATCCAAGAT+AGG - chr1_1:75933595-75933614 None:intergenic 30.0%
ATTCTTATAAACTGCAGTAG+AGG + chr1_1:75933757-75933776 Msa0044380:CDS 30.0%
!! TGTTAGTGGTTAGTTTACTA+GGG - chr1_1:75934141-75934160 None:intergenic 30.0%
!! ATGTTAGTGGTTAGTTTACT+AGG - chr1_1:75934142-75934161 None:intergenic 30.0%
! GCTCATCAGTTTTACAAAAT+AGG - chr1_1:75934359-75934378 None:intergenic 30.0%
! TGAGCATTTTCATCAAGAAA+TGG - chr1_1:75934445-75934464 None:intergenic 30.0%
! CTTTTGCATTAACAATGCTT+GGG - chr1_1:75934483-75934502 None:intergenic 30.0%
GGTGAAAAATGTTATTACTC+AGG - chr1_1:75934507-75934526 None:intergenic 30.0%
! AAATGAGGAAATTTTGCTTC+TGG + chr1_1:75934803-75934822 Msa0044380:three_prime_UTR 30.0%
AGTCAAGAAAGAACATGTAA+AGG + chr1_1:75935052-75935071 Msa0044380:three_prime_UTR 30.0%
GTTGTAGTTTATTGAGCAAT+TGG + chr1_1:75935074-75935093 Msa0044380:three_prime_UTR 30.0%
!! TCAGATTAGCATCGATTTAA+TGG + chr1_1:75935123-75935142 Msa0044380:three_prime_UTR 30.0%
! TTTGAAGTTAATGTGAGGTG+AGG - chr1_1:75930935-75930954 None:intergenic 35.0%
!! TGATGATGTGTAGAGGATTT+TGG - chr1_1:75930967-75930986 None:intergenic 35.0%
!!! ACTTTTTGGTTGCTTGATCA+TGG - chr1_1:75930992-75931011 None:intergenic 35.0%
GTAGTAGTGATTGAGTGATT+CGG - chr1_1:75931080-75931099 None:intergenic 35.0%
! GATGAACGAACTTTTCGTAA+CGG - chr1_1:75931121-75931140 None:intergenic 35.0%
ATTCAAGTATGGAACCCAAA+TGG + chr1_1:75931181-75931200 Msa0044380:CDS 35.0%
! CGACTCTGTATTTTCCATTT+GGG - chr1_1:75931198-75931217 None:intergenic 35.0%
! ACGACTCTGTATTTTCCATT+TGG - chr1_1:75931199-75931218 None:intergenic 35.0%
! TTGATTGGTGATAAGTGTGA+TGG + chr1_1:75931443-75931462 Msa0044380:CDS 35.0%
! GATAAGTGTGATGGAGTTAT+TGG + chr1_1:75931452-75931471 Msa0044380:CDS 35.0%
TTGTGAATCAAGAATAGAGG+GGG + chr1_1:75931771-75931790 Msa0044380:intron 35.0%
AGGCAAAGCTTTCAGTAATA+TGG + chr1_1:75931997-75932016 Msa0044380:CDS 35.0%
GTCAATGCTGCAAACAAATA+TGG + chr1_1:75932043-75932062 Msa0044380:CDS 35.0%
!! AACAAATATGGTGTTGCTGT+TGG + chr1_1:75932055-75932074 Msa0044380:CDS 35.0%
GAATGAAAGAGAAAGCTTAC+AGG - chr1_1:75932088-75932107 None:intergenic 35.0%
TTATCATGTATGCTTGGATG+AGG + chr1_1:75932190-75932209 Msa0044380:intron 35.0%
TATCATGTATGCTTGGATGA+GGG + chr1_1:75932191-75932210 Msa0044380:intron 35.0%
TGCTGAATCGGTTGTAATTA+TGG + chr1_1:75932266-75932285 Msa0044380:intron 35.0%
TGTTTATCTGGCAGATTTGT+TGG + chr1_1:75932641-75932660 Msa0044380:intron 35.0%
! ATTTGTTGGAAACTTGCTCA+AGG + chr1_1:75932655-75932674 Msa0044380:CDS 35.0%
! TTTGTTGGAAACTTGCTCAA+GGG + chr1_1:75932656-75932675 Msa0044380:CDS 35.0%
TTGCATAAGCTGATCCAATA+CGG - chr1_1:75932709-75932728 None:intergenic 35.0%
ATCAGCTTATGCAAGAATGA+TGG + chr1_1:75932715-75932734 Msa0044380:CDS 35.0%
CAATCAAGTGAACCTGAAAT+GGG - chr1_1:75932785-75932804 None:intergenic 35.0%
TCAATCAAGTGAACCTGAAA+TGG - chr1_1:75932786-75932805 None:intergenic 35.0%
ATCCTACTTGAAAGTTCTCT+AGG + chr1_1:75932893-75932912 Msa0044380:intron 35.0%
CTCTAGGTCACATAATATCT+AGG + chr1_1:75932909-75932928 Msa0044380:intron 35.0%
TTCAAATTTGGCCAAGTTAC+TGG + chr1_1:75933103-75933122 Msa0044380:intron 35.0%
! TGATTCTTTTCTGCTGTATC+AGG + chr1_1:75933218-75933237 Msa0044380:intron 35.0%
AGACTAGAAAAGTTTGTCAC+AGG + chr1_1:75933291-75933310 Msa0044380:CDS 35.0%
AGCATATGGTGCTTTCTTAA+AGG + chr1_1:75933391-75933410 Msa0044380:intron 35.0%
AAACACCAGTAACTTGGAAA+AGG + chr1_1:75933423-75933442 Msa0044380:CDS 35.0%
AACACCAGTAACTTGGAAAA+GGG + chr1_1:75933424-75933443 Msa0044380:CDS 35.0%
TTCTTACTATATCTGCCTCT+TGG - chr1_1:75933472-75933491 None:intergenic 35.0%
!! GATTAGTCTTCATCCTATCT+TGG + chr1_1:75933579-75933598 Msa0044380:intron 35.0%
AACTCTAACCTTCTTCATCT+TGG - chr1_1:75933644-75933663 None:intergenic 35.0%
ATGAAGAAGGTTAGAGTTCA+AGG + chr1_1:75933646-75933665 Msa0044380:intron 35.0%
TGAAGAAGGTTAGAGTTCAA+GGG + chr1_1:75933647-75933666 Msa0044380:intron 35.0%
AAATTACTTATGGCATCACG+TGG + chr1_1:75933689-75933708 Msa0044380:intron 35.0%
GTGCAACTTCATCAATAACA+GGG - chr1_1:75933783-75933802 None:intergenic 35.0%
AGTGCAACTTCATCAATAAC+AGG - chr1_1:75933784-75933803 None:intergenic 35.0%
TATTGATGAAGTTGCACTTG+TGG + chr1_1:75933786-75933805 Msa0044380:CDS 35.0%
CAATTACCTCAAACACATCA+AGG - chr1_1:75933846-75933865 None:intergenic 35.0%
! AATTGAACCTTGTCTGCTTT+TGG + chr1_1:75933861-75933880 Msa0044380:intron 35.0%
TTGTTATCCAAAAGCAGACA+AGG - chr1_1:75933871-75933890 None:intergenic 35.0%
AATCACATGGTGTCTTGAAA+AGG - chr1_1:75933915-75933934 None:intergenic 35.0%
ATGAGCCTCCTTATAATACA+GGG + chr1_1:75934373-75934392 Msa0044380:intron 35.0%
TGATCTTGCCCTGTATTATA+AGG - chr1_1:75934384-75934403 None:intergenic 35.0%
TATAATACAGGGCAAGATCA+AGG + chr1_1:75934384-75934403 Msa0044380:intron 35.0%
ATAATACAGGGCAAGATCAA+GGG + chr1_1:75934385-75934404 Msa0044380:intron 35.0%
TATTGGCATCAAACCATACT+GGG - chr1_1:75934414-75934433 None:intergenic 35.0%
AGTATGGTTTGATGCCAATA+GGG + chr1_1:75934414-75934433 Msa0044380:CDS 35.0%
! GCTTTTGCATTAACAATGCT+TGG - chr1_1:75934484-75934503 None:intergenic 35.0%
! ACATTTTTCACCCTTTCACT+TGG + chr1_1:75934515-75934534 Msa0044380:intron 35.0%
! CATTTTTCACCCTTTCACTT+GGG + chr1_1:75934516-75934535 Msa0044380:intron 35.0%
AATATTTGGCCCAAGTGAAA+GGG - chr1_1:75934528-75934547 None:intergenic 35.0%
!! ATACACTACAGCTTTGAAAC+TGG - chr1_1:75934618-75934637 None:intergenic 35.0%
CTTGCATTCTTCTGATCTAA+TGG - chr1_1:75934852-75934871 None:intergenic 35.0%
ATACACATTCTTCCTCATCA+AGG - chr1_1:75935175-75935194 None:intergenic 35.0%
TGTATCCATCCTCACTTATA+AGG + chr1_1:75935190-75935209 Msa0044380:three_prime_UTR 35.0%
GTATCCATCCTCACTTATAA+GGG + chr1_1:75935191-75935210 Msa0044380:three_prime_UTR 35.0%
! CATGGAATGATGATGTGTAG+AGG - chr1_1:75930974-75930993 None:intergenic 40.0%
ATTGAATCAGTGAGTCAAGG+TGG - chr1_1:75931145-75931164 None:intergenic 40.0%
!! ACCTTGACTCACTGATTCAA+TGG + chr1_1:75931144-75931163 Msa0044380:exon 40.0%
GTTAGCACAAAATCAATGCC+TGG + chr1_1:75931217-75931236 Msa0044380:CDS 40.0%
! CTAAAGTGTTTATCGAGGAG+AGG + chr1_1:75931820-75931839 Msa0044380:intron 40.0%
GCTTTCAGTAATATGGCTGT+TGG + chr1_1:75932004-75932023 Msa0044380:CDS 40.0%
GACTTGTACTGCTAAACCTT+CGG + chr1_1:75932223-75932242 Msa0044380:intron 40.0%
ACTTGTACTGCTAAACCTTC+GGG + chr1_1:75932224-75932243 Msa0044380:intron 40.0%
ATATACATGCATGTACCCGA+AGG - chr1_1:75932242-75932261 None:intergenic 40.0%
ATGAGGGCAGGATTATATGA+TGG + chr1_1:75932466-75932485 Msa0044380:CDS 40.0%
TGTGCTATACACTCTTCTGA+AGG + chr1_1:75932597-75932616 Msa0044380:intron 40.0%
!! GGACAAACAGTTGGTGTTAT+CGG + chr1_1:75932677-75932696 Msa0044380:CDS 40.0%
ATGTCTATCCATCCCATTTC+AGG + chr1_1:75932770-75932789 Msa0044380:intron 40.0%
! GACCTAGAGAACTTTCAAGT+AGG - chr1_1:75932898-75932917 None:intergenic 40.0%
!! TTTCTGCTGTATCAGGTTGA+AGG + chr1_1:75933225-75933244 Msa0044380:intron 40.0%
!! TTCTGCTGTATCAGGTTGAA+GGG + chr1_1:75933226-75933245 Msa0044380:intron 40.0%
GGTAGAGATCGAAGTATATC+AGG - chr1_1:75933263-75933282 None:intergenic 40.0%
AAGCACCATATGCTGCAATA+AGG - chr1_1:75933385-75933404 None:intergenic 40.0%
GGTGCTTTCTTAAAGGCAAA+TGG + chr1_1:75933398-75933417 Msa0044380:CDS 40.0%
ATGGTGAAACACCAGTAACT+TGG + chr1_1:75933417-75933436 Msa0044380:CDS 40.0%
CAGCTACAAAGTTTAACTCG+AGG - chr1_1:75933502-75933521 None:intergenic 40.0%
GAAAATCCAATGTTTCGCGT+AGG + chr1_1:75933820-75933839 Msa0044380:CDS 40.0%
!! GTCTGCTTTTGGATAACAAC+AGG + chr1_1:75933872-75933891 Msa0044380:intron 40.0%
AGCAATGTGTGGTACTACAA+CGG - chr1_1:75933992-75934011 None:intergenic 40.0%
! GTTAGTTTACTAGGGAGAAG+GGG - chr1_1:75934133-75934152 None:intergenic 40.0%
!! GGTTAGTTTACTAGGGAGAA+GGG - chr1_1:75934134-75934153 None:intergenic 40.0%
!! TGGTTAGTTTACTAGGGAGA+AGG - chr1_1:75934135-75934154 None:intergenic 40.0%
GGTGGATATGCAAATGTTAG+TGG - chr1_1:75934155-75934174 None:intergenic 40.0%
TTTCATGCATGTGTTTGCAG+TGG + chr1_1:75934226-75934245 Msa0044380:intron 40.0%
ATCCAAGATGGAGAGACATA+GGG - chr1_1:75934300-75934319 None:intergenic 40.0%
AATCCAAGATGGAGAGACAT+AGG - chr1_1:75934301-75934320 None:intergenic 40.0%
ACGTAGGAATGAATCCAAGA+TGG - chr1_1:75934312-75934331 None:intergenic 40.0%
GATGAGCCTCCTTATAATAC+AGG + chr1_1:75934372-75934391 Msa0044380:intron 40.0%
TCTTGCCCTGTATTATAAGG+AGG - chr1_1:75934381-75934400 None:intergenic 40.0%
CTATTGGCATCAAACCATAC+TGG - chr1_1:75934415-75934434 None:intergenic 40.0%
CAGTATGGTTTGATGCCAAT+AGG + chr1_1:75934413-75934432 Msa0044380:CDS 40.0%
CAATATTTGGCCCAAGTGAA+AGG - chr1_1:75934529-75934548 None:intergenic 40.0%
AAAGCTGTAGTGTATGCGTA+CGG + chr1_1:75934623-75934642 Msa0044380:exon 40.0%
! TATGCACACACAAGCTTTGA+AGG - chr1_1:75934672-75934691 None:intergenic 40.0%
!! ACAAAGTGCAGTGTTGATGA+CGG + chr1_1:75934986-75935005 Msa0044380:three_prime_UTR 40.0%
TATTGAGCAATTGGGAGAGT+TGG + chr1_1:75935083-75935102 Msa0044380:three_prime_UTR 40.0%
ATTGAGCAATTGGGAGAGTT+GGG + chr1_1:75935084-75935103 Msa0044380:three_prime_UTR 40.0%
GAAGTTAATGTGAGGTGAGG+AGG - chr1_1:75930932-75930951 None:intergenic 45.0%
!! AGTGATTCGGTGTGAAACAG+TGG - chr1_1:75931067-75931086 None:intergenic 45.0%
GCCATTGAATCAGTGAGTCA+AGG - chr1_1:75931148-75931167 None:intergenic 45.0%
AATCAATGCCTGGAACTCGT+TGG + chr1_1:75931227-75931246 Msa0044380:CDS 45.0%
AGATTGATCCAACGAGTTCC+AGG - chr1_1:75931238-75931257 None:intergenic 45.0%
! GTGTGATGGAGTTATTGGAC+AGG + chr1_1:75931457-75931476 Msa0044380:CDS 45.0%
ATAAAAGCAACTCTCGGGAG+AGG + chr1_1:75931888-75931907 Msa0044380:intron 45.0%
TAAAAGCAACTCTCGGGAGA+GGG + chr1_1:75931889-75931908 Msa0044380:intron 45.0%
! TTTTGCAGCTGACTGAAGAC+TGG + chr1_1:75931939-75931958 Msa0044380:intron 45.0%
TTTGCAGCTGACTGAAGACT+GGG + chr1_1:75931940-75931959 Msa0044380:intron 45.0%
! TTCTCTGCTTTGAGCAAAGC+AGG + chr1_1:75931974-75931993 Msa0044380:CDS 45.0%
AGCTGCTAGAAGGATAGTTG+AGG + chr1_1:75932432-75932451 Msa0044380:CDS 45.0%
TTGAGGCAGATGAGTTCATG+AGG + chr1_1:75932449-75932468 Msa0044380:CDS 45.0%
TGAGGCAGATGAGTTCATGA+GGG + chr1_1:75932450-75932469 Msa0044380:CDS 45.0%
! CTATACACTCTTCTGAAGGC+TGG + chr1_1:75932601-75932620 Msa0044380:intron 45.0%
TTGCTCAAGGGACAAACAGT+TGG + chr1_1:75932668-75932687 Msa0044380:CDS 45.0%
CAAGTGAACCTGAAATGGGA+TGG - chr1_1:75932781-75932800 None:intergenic 45.0%
AAGACTCGCCAAGATGAAGA+AGG + chr1_1:75933633-75933652 Msa0044380:CDS 45.0%
CACATGGTGTCTTGAAAAGG+TGG - chr1_1:75933912-75933931 None:intergenic 45.0%
GCAAGTCCAGGTTTCATGTA+GGG - chr1_1:75933955-75933974 None:intergenic 45.0%
TGCAAGTCCAGGTTTCATGT+AGG - chr1_1:75933956-75933975 None:intergenic 45.0%
TTCTTCAACTCTGCAAGTCC+AGG - chr1_1:75933967-75933986 None:intergenic 45.0%
TTGGAAGCAGAAGCAATGTG+TGG - chr1_1:75934003-75934022 None:intergenic 45.0%
ACACATTGCTTCTGCTTCCA+AGG + chr1_1:75934002-75934021 Msa0044380:CDS 45.0%
ATCCCTATGTCTCTCCATCT+TGG + chr1_1:75934295-75934314 Msa0044380:intron 45.0%
ATGGTTTGATGCCAATAGGG+TGG + chr1_1:75934417-75934436 Msa0044380:CDS 45.0%
AAGAAATGGCTCCACCCTAT+TGG - chr1_1:75934431-75934450 None:intergenic 45.0%
AAGCTGTAGTGTATGCGTAC+GGG + chr1_1:75934624-75934643 Msa0044380:exon 45.0%
!! CAAGCTTTGAAGGCTCTTGT+AGG - chr1_1:75934662-75934681 None:intergenic 45.0%
AGCTTGTGTGTGCATACTGA+TGG + chr1_1:75934676-75934695 Msa0044380:three_prime_UTR 45.0%
TTGTGTGTGCATACTGATGG+TGG + chr1_1:75934679-75934698 Msa0044380:three_prime_UTR 45.0%
TCTTCCTCATCAAGGCAATG+AGG - chr1_1:75935167-75935186 None:intergenic 45.0%
TCCATCCTCACTTATAAGGG+AGG + chr1_1:75935194-75935213 Msa0044380:three_prime_UTR 45.0%
TCCTCCCTTATAAGTGAGGA+TGG - chr1_1:75935198-75935217 None:intergenic 45.0%
ATCCTCACTTATAAGGGAGG+AGG + chr1_1:75935197-75935216 Msa0044380:three_prime_UTR 45.0%
TCCTCACTTATAAGGGAGGA+GGG + chr1_1:75935198-75935217 Msa0044380:three_prime_UTR 45.0%
!! TTATATATTTAAATTACTTA+TGG + chr1_1:75933679-75933698 Msa0044380:intron 5.0%
TTGCAGCTGACTGAAGACTG+GGG + chr1_1:75931941-75931960 Msa0044380:intron 50.0%
! TCTGCTTTGAGCAAAGCAGG+AGG + chr1_1:75931977-75931996 Msa0044380:CDS 50.0%
GGGAGTTCTCACAGAGACTA+CGG + chr1_1:75932381-75932400 Msa0044380:intron 50.0%
!! GCTTGCAGCTTCACTGACTT+TGG + chr1_1:75932408-75932427 Msa0044380:CDS 50.0%
TGACTTTGGCAGCTGCTAGA+AGG + chr1_1:75932422-75932441 Msa0044380:CDS 50.0%
GGGCAGGATTATATGATGGC+TGG + chr1_1:75932470-75932489 Msa0044380:CDS 50.0%
!! ACAGTTGGTGTTATCGGAGC+TGG + chr1_1:75932683-75932702 Msa0044380:CDS 50.0%
GGAAGGCTTGTCCAGTAACT+TGG - chr1_1:75933117-75933136 None:intergenic 50.0%
! GCTGCCCTTTTCCAAGTTAC+TGG - chr1_1:75933431-75933450 None:intergenic 50.0%
TTGGAAAAGGGCAGCATCCA+TGG + chr1_1:75933436-75933455 Msa0044380:CDS 50.0%
CTTGTTGACGAGGTGGTAAG+TGG - chr1_1:75933611-75933630 None:intergenic 50.0%
CACTTACCACCTCGTCAACA+AGG + chr1_1:75933609-75933628 Msa0044380:CDS 50.0%
GTCTTTCCTTGTTGACGAGG+TGG - chr1_1:75933618-75933637 None:intergenic 50.0%
CGAGTCTTTCCTTGTTGACG+AGG - chr1_1:75933621-75933640 None:intergenic 50.0%
TCAAGGCCTACGCGAAACAT+TGG - chr1_1:75933829-75933848 None:intergenic 50.0%
CGTAGGCCTTGATGTGTTTG+AGG + chr1_1:75933837-75933856 Msa0044380:CDS 50.0%
GATGAGCCCTACATGAAACC+TGG + chr1_1:75933946-75933965 Msa0044380:CDS 50.0%
! TGTTTGCAGTGGACTCGTGA+GGG + chr1_1:75934237-75934256 Msa0044380:intron 50.0%
!! GCTAGCAGCTCTAAATGTGC+TGG + chr1_1:75934269-75934288 Msa0044380:CDS 50.0%
AGATCAAGGGCTACCCAGTA+TGG + chr1_1:75934398-75934417 Msa0044380:CDS 50.0%
TGAGCCTCATTGCCTTGATG+AGG + chr1_1:75935160-75935179 Msa0044380:three_prime_UTR 50.0%
CCTCACTTATAAGGGAGGAG+GGG + chr1_1:75935199-75935218 Msa0044380:three_prime_UTR 50.0%
TGTGAGGTGAGGAGGACATG+AGG - chr1_1:75930924-75930943 None:intergenic 55.0%
GCAGATGAGTTCATGAGGGC+AGG + chr1_1:75932454-75932473 Msa0044380:CDS 55.0%
GTTATCGGAGCTGGCCGTAT+TGG + chr1_1:75932692-75932711 Msa0044380:CDS 55.0%
CTCTTGGAGAACCTCGTCCA+TGG - chr1_1:75933456-75933475 None:intergenic 55.0%
CATGGACGAGGTTCTCCAAG+AGG + chr1_1:75933454-75933473 Msa0044380:CDS 55.0%
! GTCTTTTCATGTCCCCGCAG+TGG + chr1_1:75934048-75934067 Msa0044380:intron 55.0%
TTCATGTCCCCGCAGTGGTA+TGG + chr1_1:75934053-75934072 Msa0044380:intron 55.0%
TCATGTCCCCGCAGTGGTAT+GGG + chr1_1:75934054-75934073 Msa0044380:intron 55.0%
AGTCCCAACCCATACCACTG+CGG - chr1_1:75934065-75934084 None:intergenic 55.0%
! GTGTTTGCAGTGGACTCGTG+AGG + chr1_1:75934236-75934255 Msa0044380:intron 55.0%
ACAATGCTTGGGCATGCAGC+TGG - chr1_1:75934472-75934491 None:intergenic 55.0%
!! GCATACTGATGGTGGCAGTG+TGG + chr1_1:75934687-75934706 Msa0044380:three_prime_UTR 55.0%
CCCCTCCTCCCTTATAAGTG+AGG - chr1_1:75935202-75935221 None:intergenic 55.0%
AAGGGCAGCATCCATGGACG+AGG + chr1_1:75933442-75933461 Msa0044380:CDS 60.0%
TCCCCGCAGTGGTATGGGTT+GGG + chr1_1:75934059-75934078 Msa0044380:intron 60.0%
TCCCAACCCATACCACTGCG+GGG - chr1_1:75934063-75934082 None:intergenic 60.0%
GTCCCAACCCATACCACTGC+GGG - chr1_1:75934064-75934083 None:intergenic 60.0%
! GCAGTGGACTCGTGAGGGAA+TGG + chr1_1:75934242-75934261 Msa0044380:intron 60.0%
ATGCTTGGGCATGCAGCTGG+AGG - chr1_1:75934469-75934488 None:intergenic 60.0%
GTCCCCGCAGTGGTATGGGT+TGG + chr1_1:75934058-75934077 Msa0044380:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75930912 75935241 75930912 ID=Msa0044380;Name=Msa0044380
chr1_1 mRNA 75930912 75935241 75930912 ID=Msa0044380-mRNA-1;Parent=Msa0044380;Name=Msa0044380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=251|1|1|1|1|1|13|609|386
chr1_1 exon 75930912 75931285 75930912 ID=Msa0044380-mRNA-1:exon:25697;Parent=Msa0044380-mRNA-1
chr1_1 exon 75931395 75931478 75931395 ID=Msa0044380-mRNA-1:exon:25698;Parent=Msa0044380-mRNA-1
chr1_1 exon 75931947 75932087 75931947 ID=Msa0044380-mRNA-1:exon:25699;Parent=Msa0044380-mRNA-1
chr1_1 exon 75932382 75932503 75932382 ID=Msa0044380-mRNA-1:exon:25700;Parent=Msa0044380-mRNA-1
chr1_1 exon 75932655 75932736 75932655 ID=Msa0044380-mRNA-1:exon:25701;Parent=Msa0044380-mRNA-1
chr1_1 exon 75933240 75933312 75933240 ID=Msa0044380-mRNA-1:exon:25702;Parent=Msa0044380-mRNA-1
chr1_1 exon 75933393 75933484 75933393 ID=Msa0044380-mRNA-1:exon:25703;Parent=Msa0044380-mRNA-1
chr1_1 exon 75933580 75933654 75933580 ID=Msa0044380-mRNA-1:exon:25704;Parent=Msa0044380-mRNA-1
chr1_1 exon 75933751 75933858 75933751 ID=Msa0044380-mRNA-1:exon:25705;Parent=Msa0044380-mRNA-1
chr1_1 exon 75933946 75934023 75933946 ID=Msa0044380-mRNA-1:exon:25706;Parent=Msa0044380-mRNA-1
chr1_1 exon 75934246 75934290 75934246 ID=Msa0044380-mRNA-1:exon:25707;Parent=Msa0044380-mRNA-1
chr1_1 exon 75934394 75934508 75934394 ID=Msa0044380-mRNA-1:exon:25708;Parent=Msa0044380-mRNA-1
chr1_1 exon 75934610 75935241 75934610 ID=Msa0044380-mRNA-1:exon:25709;Parent=Msa0044380-mRNA-1
chr1_1 five_prime_UTR 75930912 75931162 75930912 ID=Msa0044380-mRNA-1:five_prime_utr;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75931163 75931285 75931163 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75931395 75931478 75931395 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75931947 75932087 75931947 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75932382 75932503 75932382 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75932655 75932736 75932655 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75933240 75933312 75933240 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75933393 75933484 75933393 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75933580 75933654 75933580 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75933751 75933858 75933751 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75933946 75934023 75933946 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75934246 75934290 75934246 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75934394 75934508 75934394 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 CDS 75934610 75934632 75934610 ID=Msa0044380-mRNA-1:cds;Parent=Msa0044380-mRNA-1
chr1_1 three_prime_UTR 75934633 75935241 75934633 ID=Msa0044380-mRNA-1:three_prime_utr;Parent=Msa0044380-mRNA-1
Gene Sequence

>Msa0044380

ATGGCTAAACCAGTTTCAATTCAAGTATGGAACCCAAATGGAAAATACAGAGTCGTTAGCACAAAATCAATGCCTGGAACTCGTTGGATCAATCTTCTCATTCAACAAGATTGTCGTCTTGAAATATGTACGGAGAAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCAGGAGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGCTGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTGGTGTTATCGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTGATATACTTCGATCTCTACCAATCTACAAGACTAGAAAAGTTTGTCACAGCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGCCCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>Msa0044380

MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*