AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121740 MtrunA17_Chr7g0249441 95.527 313 8 3 1 312 1 308 0.0 605
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121740 AT1G65230.1 62.909 275 85 5 44 312 23 286 9.18e-123 353

Find 83 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTATGAACTTCGCTATT+TGG 0.163105 7_3:+71869631 None:intergenic
GAATGACTTGTCCACTAATT+TGG 0.200921 7_3:+71871318 None:intergenic
TCATTCAGCATGAAGAATTA+TGG 0.241883 7_3:-71871301 Msa1121740:CDS
CTGTTGTTTGTCTACGTATC+TGG 0.246266 7_3:-71872876 Msa1121740:five_prime_UTR
AATTTGGTTAAGCGTAAATT+TGG 0.268859 7_3:+71871334 None:intergenic
ATCAGAGTTCTCTTCTTTCT+TGG 0.276153 7_3:+71871154 None:intergenic
AAAATTAGCACTCAAATTCT+TGG 0.285342 7_3:+71871181 None:intergenic
GATATTTATCCAGATCCTTC+TGG 0.318352 7_3:-71871134 Msa1121740:CDS
TTCAGATGCTGCTGATAAAA+TGG 0.337879 7_3:-71872471 Msa1121740:CDS
TTTACGCTTAACCAAATTAG+TGG 0.347218 7_3:-71871329 Msa1121740:CDS
TGATGTTTAATGAAAACTTA+AGG 0.364721 7_3:-71873191 Msa1121740:intron
AAAAGTATAAGAGACCTCTA+TGG 0.372478 7_3:-71872180 Msa1121740:CDS
TCAGAGTTCTCTTCTTTCTT+GGG 0.383027 7_3:+71871155 None:intergenic
AGTATCAAGTGGACAGTTAG+AGG 0.384239 7_3:-71871413 Msa1121740:CDS
ATTGTTTGCAGGATCCTATC+AGG 0.388892 7_3:-71872219 Msa1121740:intron
CACACTATCCTTCACGGAAT+GGG 0.401900 7_3:-71872830 Msa1121740:five_prime_UTR
ACACCAGCTAGAACAGATTT+AGG 0.403229 7_3:+71871386 None:intergenic
GGTTGAATCTGTGAAAGATT+TGG 0.405021 7_3:-71871213 Msa1121740:CDS
GTGAAGGATAGTGTGTTGTT+TGG 0.416104 7_3:+71872838 None:intergenic
CATTCAGCATGAAGAATTAT+GGG 0.416776 7_3:-71871300 Msa1121740:CDS
GTAAAATGCAGATCACAATA+AGG 0.422991 7_3:+71869908 None:intergenic
TGAAGGATAGTGTGTTGTTT+GGG 0.423128 7_3:+71872839 None:intergenic
TTCGGTCCTATCAGCATCAT+TGG 0.433294 7_3:+71872526 None:intergenic
TTATGAACTTCGCTATTTGG+TGG 0.450290 7_3:+71869634 None:intergenic
TAATTTAAACTCACCACAGA+TGG 0.463620 7_3:+71872136 None:intergenic
TGCTGTTTCTGTCACTTACA+AGG 0.463924 7_3:-71872315 Msa1121740:intron
TGTGGCGGAGGAGGAAAGAG+AGG 0.467550 7_3:+71872750 None:intergenic
GTTGGATCACCAGAAGGATC+TGG 0.473479 7_3:+71871125 None:intergenic
CGACCACTAAAACTCCTGAT+AGG 0.474517 7_3:+71872205 None:intergenic
GTTGAAAGCCGTCATCCCTC+TGG 0.476597 7_3:+71870017 None:intergenic
GCGGTGGAGTGTGGCGGAGG+AGG 0.478332 7_3:+71872741 None:intergenic
ATCTTCACCTGCTAGTGCTC+AGG 0.479652 7_3:-71871270 Msa1121740:CDS
GAAGTAGCGGCGAGAGAACA+AGG 0.480505 7_3:+71872775 None:intergenic
CTGCCAGGAGTAGAGCAATC+TGG 0.488469 7_3:+71869984 None:intergenic
CTCGTGATATATTTGAGCTA+AGG 0.495749 7_3:-71872364 Msa1121740:CDS
AAACAACACACTATCCTTCA+CGG 0.495763 7_3:-71872836 Msa1121740:five_prime_UTR
GTGGTGATGACGAAAGGAGA+AGG 0.508508 7_3:+71872681 None:intergenic
CAGTTGCCAATGATGCTGAT+AGG 0.508689 7_3:-71872532 Msa1121740:CDS
ATAAGAGAACTCACCTTGGT+TGG 0.519117 7_3:+71871107 None:intergenic
ATCGCGTGTTCTGTTTGCTA+CGG 0.519764 7_3:-71871234 Msa1121740:CDS
GTTTGGTTAACAGACTGTAC+AGG 0.529382 7_3:-71871465 Msa1121740:intron
ATGGTTGATAGTATGAACTT+TGG 0.529569 7_3:-71872452 Msa1121740:CDS
CAGTTCTTCCAGAGGGATGA+CGG 0.534938 7_3:-71870025 Msa1121740:CDS
GATGCGGTGGAGTGTGGCGG+AGG 0.539212 7_3:+71872738 None:intergenic
ACACACTATCCTTCACGGAA+TGG 0.540777 7_3:-71872831 Msa1121740:five_prime_UTR
TGTGGTATCAGATGATAGTT+CGG 0.542233 7_3:+71872508 None:intergenic
AGGAGTGGGAATCGAGCACT+TGG 0.543642 7_3:-71872344 Msa1121740:CDS
AAGCCTAAATCTGTTCTAGC+TGG 0.546046 7_3:-71871389 Msa1121740:CDS
ACTCCAGATTGCTCTACTCC+TGG 0.553360 7_3:-71869987 Msa1121740:CDS
AATGCAGATCACAATAAGGC+AGG 0.555720 7_3:+71869912 None:intergenic
CCACAAAATATATAACTGCC+AGG 0.563060 7_3:+71869969 None:intergenic
TCTGTTCTAGCTGGTGTAGG+AGG 0.568924 7_3:-71871380 Msa1121740:CDS
ACGAGCAAGTTGTCTTGCAG+TGG 0.572718 7_3:+71872382 None:intergenic
AAATCTGTTCTAGCTGGTGT+AGG 0.576290 7_3:-71871383 Msa1121740:CDS
CACCACTCTTCTTCATTGCG+AGG 0.581012 7_3:-71872658 Msa1121740:intron
GTATCAAGTGGACAGTTAGA+GGG 0.582280 7_3:-71871412 Msa1121740:CDS
AAAGTATAAGAGACCTCTAT+GGG 0.587841 7_3:-71872179 Msa1121740:CDS
AATTTAAACTCACCACAGAT+GGG 0.588338 7_3:+71872137 None:intergenic
GATATATTTGAGCTAAGGAG+TGG 0.589959 7_3:-71872359 Msa1121740:CDS
GGAAAGAGAGGAAGAAGTAG+CGG 0.591096 7_3:+71872762 None:intergenic
TGAGTGCAATAGTAGTCCCT+CGG 0.596094 7_3:-71872411 Msa1121740:CDS
CTTGCAGTGGATTCAACCGA+GGG 0.597295 7_3:+71872395 None:intergenic
TGTATTGATGCGGTGGAGTG+TGG 0.604153 7_3:+71872732 None:intergenic
ACACTATCCTTCACGGAATG+GGG 0.609466 7_3:-71872829 Msa1121740:five_prime_UTR
TGGTGATGACGAAAGGAGAA+GGG 0.615083 7_3:+71872682 None:intergenic
CATGTCTCCCCATTCCGTGA+AGG 0.621357 7_3:+71872822 None:intergenic
GAACAAGGACAAGAAAGTGC+GGG 0.622504 7_3:+71872790 None:intergenic
GCATGTGCGTACTACTATGT+TGG 0.627195 7_3:+71872708 None:intergenic
GTGGTGGTGGTGATGACGAA+AGG 0.628864 7_3:+71872675 None:intergenic
ATATATTTGAGCTAAGGAGT+GGG 0.636515 7_3:-71872358 Msa1121740:CDS
ACCTTGGTTGGATCACCAGA+AGG 0.644200 7_3:+71871119 None:intergenic
TGTTGGATGTATTGATGCGG+TGG 0.648538 7_3:+71872725 None:intergenic
TCTTGCAGTGGATTCAACCG+AGG 0.655059 7_3:+71872394 None:intergenic
CTCGCAATGAAGAAGAGTGG+TGG 0.661528 7_3:+71872659 None:intergenic
GTAAGTGACAGAAACAGCAT+AGG 0.662129 7_3:+71872319 None:intergenic
TACCTCGCAATGAAGAAGAG+TGG 0.666327 7_3:+71872656 None:intergenic
AGAACAAGGACAAGAAAGTG+CGG 0.667273 7_3:+71872789 None:intergenic
GCAATGAAGAAGAGTGGTGG+TGG 0.667864 7_3:+71872662 None:intergenic
TGCACTTGAAAACCCATCTG+TGG 0.671005 7_3:-71872149 Msa1121740:intron
TCCTTCTGGTGATCCAACCA+AGG 0.672407 7_3:-71871120 Msa1121740:intron
AGTGCAGTGATAGCCCATAG+AGG 0.679550 7_3:+71872166 None:intergenic
ATTGATGCGGTGGAGTGTGG+CGG 0.682706 7_3:+71872735 None:intergenic
CTATGTTGGATGTATTGATG+CGG 0.724417 7_3:+71872722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTAAATTTGACAAA+AGG - chr7_3:71871221-71871240 Msa1121740:CDS 10.0%
!! AAACATTTATAAAGTAACAT+TGG - chr7_3:71869656-71869675 Msa1121740:three_prime_UTR 15.0%
!!! ATTTTTATGGAAAATTACAT+TGG + chr7_3:71869769-71869788 None:intergenic 15.0%
!!! TAAGTTTTTCCTTTTTAATT+TGG - chr7_3:71870735-71870754 Msa1121740:intron 15.0%
!! GATTGTATTATTCATTTATT+TGG - chr7_3:71872640-71872659 Msa1121740:intron 15.0%
!! ATTTATAAAGTAACATTGGT+AGG - chr7_3:71869660-71869679 Msa1121740:three_prime_UTR 20.0%
!! AGGTATTTATTTGTCTTTAA+TGG - chr7_3:71870442-71870461 Msa1121740:intron 20.0%
!! ATAAAAGATATAAAGTCCAA+AGG + chr7_3:71870472-71870491 None:intergenic 20.0%
!!! TTTTTCCTTTTTAATTTGGT+GGG - chr7_3:71870739-71870758 Msa1121740:intron 20.0%
!! TACAAAATGTTGTCAAATAA+CGG - chr7_3:71870871-71870890 Msa1121740:intron 20.0%
!! CAAATTTCAATATATTTGAG+TGG - chr7_3:71871130-71871149 Msa1121740:CDS 20.0%
!! AATTAAATTTGACAAAAGGA+AGG - chr7_3:71871225-71871244 Msa1121740:CDS 20.0%
!!! GTTATGAAATTTGTTTTGTT+TGG - chr7_3:71871255-71871274 Msa1121740:CDS 20.0%
!!! TCTTATCTTTTATCTTCTTA+AGG - chr7_3:71871684-71871703 Msa1121740:intron 20.0%
!!! ATTGTTTTCATATAACCTAT+AGG - chr7_3:71872387-71872406 Msa1121740:CDS 20.0%
!!! TTATTTTCAATAAACTATCC+GGG + chr7_3:71872430-71872449 None:intergenic 20.0%
!!! CTTATTTTCAATAAACTATC+CGG + chr7_3:71872431-71872450 None:intergenic 20.0%
!! AAAGAAATAAACTAGAAGAT+TGG + chr7_3:71872549-71872568 None:intergenic 20.0%
!!! TTTTTACCATTATTACATGA+TGG - chr7_3:71872574-71872593 Msa1121740:intron 20.0%
! ATATACCATTGGTACTTTAA+TGG - chr7_3:71869708-71869727 Msa1121740:three_prime_UTR 25.0%
! TTAATGGTATACATTACAAG+TGG - chr7_3:71869724-71869743 Msa1121740:three_prime_UTR 25.0%
!!! TTTCATGCTTCTTTTTTCTA+TGG + chr7_3:71869817-71869836 None:intergenic 25.0%
! AAGAAAAGAAGAAAAAGAAG+AGG - chr7_3:71869838-71869857 Msa1121740:three_prime_UTR 25.0%
!! TACAGTTGATATATGTTAGT+TGG - chr7_3:71870171-71870190 Msa1121740:intron 25.0%
!!! TGAATATGATTTTTCAGTTG+TGG + chr7_3:71870250-71870269 None:intergenic 25.0%
!!! GATGTTTTTTTATTGTTTGC+AGG - chr7_3:71870507-71870526 Msa1121740:intron 25.0%
!!! GTTTTTCCTTTTTAATTTGG+TGG - chr7_3:71870738-71870757 Msa1121740:intron 25.0%
! TAGAATGGTGAAATAAAACA+TGG + chr7_3:71871174-71871193 None:intergenic 25.0%
! GAAAGTGAAATCTAATAGAA+TGG + chr7_3:71871189-71871208 None:intergenic 25.0%
! AATTTGGTTAAGCGTAAATT+TGG + chr7_3:71871406-71871425 None:intergenic 25.0%
! AAAATTAGCACTCAAATTCT+TGG + chr7_3:71871559-71871578 None:intergenic 25.0%
!!! AAGGTATTTTGCTTACTTTT+TGG - chr7_3:71871703-71871722 Msa1121740:intron 25.0%
! TCTACTATGAGTGTTTAATT+AGG + chr7_3:71871737-71871756 None:intergenic 25.0%
!!! TTTTTTTATTGCTGTTTTGG+CGG + chr7_3:71871832-71871851 None:intergenic 25.0%
!!! GTGTTTTTTTATTGCTGTTT+TGG + chr7_3:71871835-71871854 None:intergenic 25.0%
!! AATGATATAATCTTTTCTGG+AGG + chr7_3:71872110-71872129 None:intergenic 25.0%
! CAGAAAAGATTATATCATTC+CGG - chr7_3:71872111-71872130 Msa1121740:intron 25.0%
! AGTTTATGAAAACAACCTAT+AGG + chr7_3:71872405-71872424 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr7_3:71872445-71872464 Msa1121740:CDS 25.0%
! ATAAGCTGAAAACAACTTAT+GGG - chr7_3:71872446-71872465 Msa1121740:CDS 25.0%
! TTCATACCATCATGTAATAA+TGG + chr7_3:71872583-71872602 None:intergenic 25.0%
!! TCTTTTCATGAGTTAATTGT+TGG - chr7_3:71872675-71872694 Msa1121740:CDS 25.0%
!!! TCATAAGTTGTTTTAGAGTA+TGG - chr7_3:71873120-71873139 Msa1121740:intron 25.0%
!!! CATAAGTTGTTTTAGAGTAT+GGG - chr7_3:71873121-71873140 Msa1121740:intron 25.0%
!!! ATAAGTTGTTTTAGAGTATG+GGG - chr7_3:71873122-71873141 Msa1121740:intron 25.0%
!! TTTTAAAAGGATATGCTACG+TGG + chr7_3:71869623-71869642 None:intergenic 30.0%
! GTATACCATTAAAGTACCAA+TGG + chr7_3:71869716-71869735 None:intergenic 30.0%
!!! GCTTCTTTTTTCTATGGATA+AGG + chr7_3:71869811-71869830 None:intergenic 30.0%
!! ATGGTTGATAGTATGAACTT+TGG - chr7_3:71870285-71870304 Msa1121740:intron 30.0%
ATATATTTGAGCTAAGGAGT+GGG - chr7_3:71870379-71870398 Msa1121740:intron 30.0%
! TGTCTTTAATGGTTTTCCTT+TGG - chr7_3:71870453-71870472 Msa1121740:intron 30.0%
! AAAAGTATAAGAGACCTCTA+TGG - chr7_3:71870557-71870576 Msa1121740:intron 30.0%
AAAGTATAAGAGACCTCTAT+GGG - chr7_3:71870558-71870577 Msa1121740:intron 30.0%
AATTTAAACTCACCACAGAT+GGG + chr7_3:71870603-71870622 None:intergenic 30.0%
TAATTTAAACTCACCACAGA+TGG + chr7_3:71870604-71870623 None:intergenic 30.0%
TTATGTAGTTTCTTCTCCTA+AGG - chr7_3:71870621-71870640 Msa1121740:intron 30.0%
! AACTAGTCTATGAAGCAATA+AGG - chr7_3:71870648-71870667 Msa1121740:intron 30.0%
!! TACTCAAGCATTGATCAAAA+GGG + chr7_3:71870686-71870705 None:intergenic 30.0%
TATAACATACTGCAAAACAC+TGG + chr7_3:71870848-71870867 None:intergenic 30.0%
ATGTCTTCAATCACAAATAG+CGG + chr7_3:71870942-71870961 None:intergenic 30.0%
AAAGACATGAAATTGATCAG+TGG + chr7_3:71871006-71871025 None:intergenic 30.0%
AATCGATGGAATATCTAAGA+AGG + chr7_3:71871046-71871065 None:intergenic 30.0%
!! GAAGTTTTTAAAGGAATCGA+TGG + chr7_3:71871060-71871079 None:intergenic 30.0%
! CCTCATATGGAAGTTTTTAA+AGG + chr7_3:71871069-71871088 None:intergenic 30.0%
! CCTTTAAAAACTTCCATATG+AGG - chr7_3:71871066-71871085 Msa1121740:intron 30.0%
TCTTAAACAGTTACCTCATA+TGG + chr7_3:71871082-71871101 None:intergenic 30.0%
AAATTTGACAAAAGGAAGGT+AGG - chr7_3:71871229-71871248 Msa1121740:CDS 30.0%
!! CAAGTGTTTTAAGTATCAAG+TGG - chr7_3:71871313-71871332 Msa1121740:CDS 30.0%
TTTACGCTTAACCAAATTAG+TGG - chr7_3:71871408-71871427 Msa1121740:CDS 30.0%
TCATTCAGCATGAAGAATTA+TGG - chr7_3:71871436-71871455 Msa1121740:CDS 30.0%
CATTCAGCATGAAGAATTAT+GGG - chr7_3:71871437-71871456 Msa1121740:CDS 30.0%
CTAGAAGAATCTTAAACTTG+TGG - chr7_3:71871653-71871672 Msa1121740:intron 30.0%
!!! GCGCTTATCTTTTTTTTGAA+TGG - chr7_3:71871758-71871777 Msa1121740:intron 30.0%
!!! TTTCTCTTTTTGGTGTTTCT+GGG + chr7_3:71871909-71871928 None:intergenic 30.0%
!!! TTTTCTCTTTTTGGTGTTTC+TGG + chr7_3:71871910-71871929 None:intergenic 30.0%
ACAAAACAATAACACTTGCA+GGG - chr7_3:71871941-71871960 Msa1121740:intron 30.0%
! CGGAATGATATAATCTTTTC+TGG + chr7_3:71872113-71872132 None:intergenic 30.0%
!!! GATTAGAGTTGCTTTTAGTT+AGG + chr7_3:71872166-71872185 None:intergenic 30.0%
! ATTTTATTCAGTTCTTCCAG+AGG - chr7_3:71872704-71872723 Msa1121740:CDS 30.0%
! TTTTATTCAGTTCTTCCAGA+GGG - chr7_3:71872705-71872724 Msa1121740:CDS 30.0%
GTAAAATGCAGATCACAATA+AGG + chr7_3:71872832-71872851 None:intergenic 30.0%
! AAGCTTTTATGACTCTGTTT+AGG - chr7_3:71872967-71872986 Msa1121740:five_prime_UTR 30.0%
AACTTATGAACTTCGCTATT+TGG + chr7_3:71873109-71873128 None:intergenic 30.0%
ATAACACTAGTGTACCATAC+TGG - chr7_3:71869570-71869589 Msa1121740:three_prime_UTR 35.0%
GACAATGGTATATACCAGTA+TGG + chr7_3:71869587-71869606 None:intergenic 35.0%
GTACCAATGGTATATACCAT+TGG + chr7_3:71869703-71869722 None:intergenic 35.0%
ACAAGTGGAATCCAAACTTA+AGG - chr7_3:71869739-71869758 Msa1121740:three_prime_UTR 35.0%
CAAGTGGAATCCAAACTTAA+GGG - chr7_3:71869740-71869759 Msa1121740:three_prime_UTR 35.0%
!! TGAAGGATAGTGTGTTGTTT+GGG + chr7_3:71869901-71869920 None:intergenic 35.0%
AAACAACACACTATCCTTCA+CGG - chr7_3:71869901-71869920 Msa1121740:three_prime_UTR 35.0%
! CTATGTTGGATGTATTGATG+CGG + chr7_3:71870018-71870037 None:intergenic 35.0%
TGTGGTATCAGATGATAGTT+CGG + chr7_3:71870232-71870251 None:intergenic 35.0%
TTCAGATGCTGCTGATAAAA+TGG - chr7_3:71870266-71870285 Msa1121740:intron 35.0%
CTCGTGATATATTTGAGCTA+AGG - chr7_3:71870373-71870392 Msa1121740:intron 35.0%
GATATATTTGAGCTAAGGAG+TGG - chr7_3:71870378-71870397 Msa1121740:intron 35.0%
!! CTACTCAAGCATTGATCAAA+AGG + chr7_3:71870687-71870706 None:intergenic 35.0%
TCTAGCCCACCAAATTAAAA+AGG + chr7_3:71870747-71870766 None:intergenic 35.0%
! GAATGACTTGTCCACTAATT+TGG + chr7_3:71871422-71871441 None:intergenic 35.0%
GGTTGAATCTGTGAAAGATT+TGG - chr7_3:71871524-71871543 Msa1121740:intron 35.0%
TCAGAGTTCTCTTCTTTCTT+GGG + chr7_3:71871585-71871604 None:intergenic 35.0%
ATCAGAGTTCTCTTCTTTCT+TGG + chr7_3:71871586-71871605 None:intergenic 35.0%
GATATTTATCCAGATCCTTC+TGG - chr7_3:71871603-71871622 Msa1121740:intron 35.0%
AACACAACAAAATACTCCTG+AGG - chr7_3:71871850-71871869 Msa1121740:intron 35.0%
ACACAACAAAATACTCCTGA+GGG - chr7_3:71871851-71871870 Msa1121740:intron 35.0%
!! TGTTATTGTTTTGTCCTTCC+GGG + chr7_3:71871935-71871954 None:intergenic 35.0%
!! GTGTTATTGTTTTGTCCTTC+CGG + chr7_3:71871936-71871955 None:intergenic 35.0%
GACAAAACAATAACACTTGC+AGG - chr7_3:71871940-71871959 Msa1121740:intron 35.0%
! ATGCTGTTATTTGGACCAAT+CGG + chr7_3:71872142-71872161 None:intergenic 35.0%
TAGTTAGGCATGCTGTTATT+TGG + chr7_3:71872151-71872170 None:intergenic 35.0%
! TTTTGCACATCTACTCTTAC+TGG + chr7_3:71872293-71872312 None:intergenic 35.0%
!! GTTGTTTTCATAAACTGTCC+CGG - chr7_3:71872409-71872428 Msa1121740:CDS 35.0%
CCACAAAATATATAACTGCC+AGG + chr7_3:71872771-71872790 None:intergenic 35.0%
! CCTGGCAGTTATATATTTTG+TGG - chr7_3:71872768-71872787 Msa1121740:CDS 35.0%
TTATGAACTTCGCTATTTGG+TGG + chr7_3:71873106-71873125 None:intergenic 35.0%
GGCACATTCTAATTGGACAA+TGG + chr7_3:71869602-71869621 None:intergenic 40.0%
GGTAGGTAACACACTCTAAT+TGG - chr7_3:71869677-71869696 Msa1121740:three_prime_UTR 40.0%
AACACACTCTAATTGGCCAA+TGG - chr7_3:71869684-71869703 Msa1121740:three_prime_UTR 40.0%
TGGCCAATGGTATATACCAT+TGG - chr7_3:71869697-71869716 Msa1121740:three_prime_UTR 40.0%
! ACATTGGTCTCCCTTAAGTT+TGG + chr7_3:71869753-71869772 None:intergenic 40.0%
! CTGTTGTTTGTCTACGTATC+TGG - chr7_3:71869861-71869880 Msa1121740:three_prime_UTR 40.0%
! GTGAAGGATAGTGTGTTGTT+TGG + chr7_3:71869902-71869921 None:intergenic 40.0%
AGAACAAGGACAAGAAAGTG+CGG + chr7_3:71869951-71869970 None:intergenic 40.0%
GTAAGTGACAGAAACAGCAT+AGG + chr7_3:71870421-71870440 None:intergenic 40.0%
!! TGCTGTTTCTGTCACTTACA+AGG - chr7_3:71870422-71870441 Msa1121740:intron 40.0%
ATTGTTTGCAGGATCCTATC+AGG - chr7_3:71870518-71870537 Msa1121740:intron 40.0%
!! GATCCTATCAGGAGTTTTAG+TGG - chr7_3:71870529-71870548 Msa1121740:intron 40.0%
! CATAGACTAGTTGCTTCCTT+AGG + chr7_3:71870640-71870659 None:intergenic 40.0%
ATCTCAGTGATGTCAGATAG+CGG - chr7_3:71870775-71870794 Msa1121740:intron 40.0%
TTGTCAAATAACGGCTAGAG+CGG - chr7_3:71870880-71870899 Msa1121740:intron 40.0%
GTTTGGTTAACAGACTGTAC+AGG - chr7_3:71871272-71871291 Msa1121740:CDS 40.0%
AGTATCAAGTGGACAGTTAG+AGG - chr7_3:71871324-71871343 Msa1121740:CDS 40.0%
GTATCAAGTGGACAGTTAGA+GGG - chr7_3:71871325-71871344 Msa1121740:CDS 40.0%
AAGCCTAAATCTGTTCTAGC+TGG - chr7_3:71871348-71871367 Msa1121740:CDS 40.0%
ACACCAGCTAGAACAGATTT+AGG + chr7_3:71871354-71871373 None:intergenic 40.0%
! AAATCTGTTCTAGCTGGTGT+AGG - chr7_3:71871354-71871373 Msa1121740:CDS 40.0%
ATAAGAGAACTCACCTTGGT+TGG + chr7_3:71871633-71871652 None:intergenic 40.0%
CTAGATAAGAGAACTCACCT+TGG + chr7_3:71871637-71871656 None:intergenic 40.0%
CACCAAAAAGAGAAAACACC+CGG - chr7_3:71871914-71871933 Msa1121740:intron 40.0%
! TTCCGGGTGTTTTCTCTTTT+TGG + chr7_3:71871919-71871938 None:intergenic 40.0%
AAAAAGAGAAAACACCCGGA+AGG - chr7_3:71871918-71871937 Msa1121740:intron 40.0%
CAACAGTTTCTGAGTTTCCT+GGG + chr7_3:71872212-71872231 None:intergenic 40.0%
CAGGAAACTCAGAAACTGTT+GGG - chr7_3:71872211-71872230 Msa1121740:CDS 40.0%
GCAAAAGATAAACAGAAGCG+TGG - chr7_3:71872307-71872326 Msa1121740:intron 40.0%
! ATTTTGTGGTACAAGCTCTG+AGG - chr7_3:71872782-71872801 Msa1121740:CDS 40.0%
AATGCAGATCACAATAAGGC+AGG + chr7_3:71872828-71872847 None:intergenic 40.0%
!!! GTTTTAGAGTATGGGGAGTT+TGG - chr7_3:71873129-71873148 Msa1121740:intron 40.0%
GCTACGTGGCACATTCTAAT+TGG + chr7_3:71869609-71869628 None:intergenic 45.0%
ACACACTATCCTTCACGGAA+TGG - chr7_3:71869906-71869925 Msa1121740:three_prime_UTR 45.0%
CACACTATCCTTCACGGAAT+GGG - chr7_3:71869907-71869926 Msa1121740:three_prime_UTR 45.0%
ACACTATCCTTCACGGAATG+GGG - chr7_3:71869908-71869927 Msa1121740:three_prime_UTR 45.0%
! GAACAAGGACAAGAAAGTGC+GGG + chr7_3:71869950-71869969 None:intergenic 45.0%
GGAAAGAGAGGAAGAAGTAG+CGG + chr7_3:71869978-71869997 None:intergenic 45.0%
! TGTTGGATGTATTGATGCGG+TGG + chr7_3:71870015-71870034 None:intergenic 45.0%
GCATGTGCGTACTACTATGT+TGG + chr7_3:71870032-71870051 None:intergenic 45.0%
! TGGTGATGACGAAAGGAGAA+GGG + chr7_3:71870058-71870077 None:intergenic 45.0%
TACCTCGCAATGAAGAAGAG+TGG + chr7_3:71870084-71870103 None:intergenic 45.0%
CAGTTGCCAATGATGCTGAT+AGG - chr7_3:71870205-71870224 Msa1121740:intron 45.0%
TTCGGTCCTATCAGCATCAT+TGG + chr7_3:71870214-71870233 None:intergenic 45.0%
TGAGTGCAATAGTAGTCCCT+CGG - chr7_3:71870326-71870345 Msa1121740:intron 45.0%
CGACCACTAAAACTCCTGAT+AGG + chr7_3:71870535-71870554 None:intergenic 45.0%
TGCACTTGAAAACCCATCTG+TGG - chr7_3:71870588-71870607 Msa1121740:intron 45.0%
GCTATAGCGCTGTAGTATAG+TGG - chr7_3:71870799-71870818 Msa1121740:intron 45.0%
! CACAAATAGCGGAAGATAGC+TGG + chr7_3:71870931-71870950 None:intergenic 45.0%
AAAAATGCCTGAGCACTAGC+AGG + chr7_3:71871477-71871496 None:intergenic 45.0%
! CTAGTGCTCAGGCATTTTTC+TGG - chr7_3:71871478-71871497 Msa1121740:intron 45.0%
! ATCGCGTGTTCTGTTTGCTA+CGG - chr7_3:71871503-71871522 Msa1121740:intron 45.0%
AGATAGAGAGAGACATCTCG+AGG - chr7_3:71871968-71871987 Msa1121740:intron 45.0%
GATAGAGAGAGACATCTCGA+GGG - chr7_3:71871969-71871988 Msa1121740:intron 45.0%
ATAGAGAGAGACATCTCGAG+GGG - chr7_3:71871970-71871989 Msa1121740:intron 45.0%
!! GAATCGGTAAGGTTTTGTGG+TGG + chr7_3:71872057-71872076 None:intergenic 45.0%
! CTGGAATCGGTAAGGTTTTG+TGG + chr7_3:71872060-71872079 None:intergenic 45.0%
ATCATTCCGGAAAGTCCGAT+TGG - chr7_3:71872124-71872143 Msa1121740:intron 45.0%
TTTGGACCAATCGGACTTTC+CGG + chr7_3:71872133-71872152 None:intergenic 45.0%
TTCTGAGTTTCCTGGGCTTA+GGG + chr7_3:71872205-71872224 None:intergenic 45.0%
TTTCTGAGTTTCCTGGGCTT+AGG + chr7_3:71872206-71872225 None:intergenic 45.0%
CCAACAGTTTCTGAGTTTCC+TGG + chr7_3:71872213-71872232 None:intergenic 45.0%
CCAGGAAACTCAGAAACTGT+TGG - chr7_3:71872210-71872229 Msa1121740:CDS 45.0%
AACTCAGAAACTGTTGGGCT+AGG - chr7_3:71872216-71872235 Msa1121740:intron 45.0%
TCTCTCAAGTAGTCTCGCAA+GGG - chr7_3:71872494-71872513 Msa1121740:CDS 45.0%
!!! TATTTGATATATTTTTTAAA+AGG + chr7_3:71869636-71869655 None:intergenic 5.0%
!!! TCATTTAATTTTAATTTTTA+TGG + chr7_3:71869782-71869801 None:intergenic 5.0%
! TGTATTGATGCGGTGGAGTG+TGG + chr7_3:71870008-71870027 None:intergenic 50.0%
! GTGGTGATGACGAAAGGAGA+AGG + chr7_3:71870059-71870078 None:intergenic 50.0%
GCAATGAAGAAGAGTGGTGG+TGG + chr7_3:71870078-71870097 None:intergenic 50.0%
CTCGCAATGAAGAAGAGTGG+TGG + chr7_3:71870081-71870100 None:intergenic 50.0%
CACCACTCTTCTTCATTGCG+AGG - chr7_3:71870079-71870098 Msa1121740:intron 50.0%
! CTTGCAGTGGATTCAACCGA+GGG + chr7_3:71870345-71870364 None:intergenic 50.0%
! TCTTGCAGTGGATTCAACCG+AGG + chr7_3:71870346-71870365 None:intergenic 50.0%
ACGAGCAAGTTGTCTTGCAG+TGG + chr7_3:71870358-71870377 None:intergenic 50.0%
AGTGCAGTGATAGCCCATAG+AGG + chr7_3:71870574-71870593 None:intergenic 50.0%
! TCTGTTCTAGCTGGTGTAGG+AGG - chr7_3:71871357-71871376 Msa1121740:CDS 50.0%
ATCTTCACCTGCTAGTGCTC+AGG - chr7_3:71871467-71871486 Msa1121740:intron 50.0%
GTTGGATCACCAGAAGGATC+TGG + chr7_3:71871615-71871634 None:intergenic 50.0%
TCCTTCTGGTGATCCAACCA+AGG - chr7_3:71871617-71871636 Msa1121740:intron 50.0%
ACCTTGGTTGGATCACCAGA+AGG + chr7_3:71871621-71871640 None:intergenic 50.0%
!!! TGCTGTTTTGGCGGCACTTT+TGG + chr7_3:71871823-71871842 None:intergenic 50.0%
! GTAGCTCTGTGTCCTTGTTG+GGG + chr7_3:71871887-71871906 None:intergenic 50.0%
! GGTAGCTCTGTGTCCTTGTT+GGG + chr7_3:71871888-71871907 None:intergenic 50.0%
!! AACCTTACCGATTCCAGCAC+AGG - chr7_3:71872063-71872082 Msa1121740:intron 50.0%
!! TTACCGATTCCAGCACAGGA+CGG - chr7_3:71872067-71872086 Msa1121740:intron 50.0%
! AAACTGTTGGGCTAGGCCTA+GGG - chr7_3:71872223-71872242 Msa1121740:intron 50.0%
TGGGTGTATGTGTTTCCCCT+AGG + chr7_3:71872242-71872261 None:intergenic 50.0%
GCACATCTACTCTTACTGGC+TGG + chr7_3:71872289-71872308 None:intergenic 50.0%
CTCTCTCAAGTAGTCTCGCA+AGG - chr7_3:71872493-71872512 Msa1121740:CDS 50.0%
CAGTTCTTCCAGAGGGATGA+CGG - chr7_3:71872712-71872731 Msa1121740:CDS 50.0%
ACTCCAGATTGCTCTACTCC+TGG - chr7_3:71872750-71872769 Msa1121740:CDS 50.0%
CATGTCTCCCCATTCCGTGA+AGG + chr7_3:71869918-71869937 None:intergenic 55.0%
GAAGTAGCGGCGAGAGAACA+AGG + chr7_3:71869965-71869984 None:intergenic 55.0%
ATTGATGCGGTGGAGTGTGG+CGG + chr7_3:71870005-71870024 None:intergenic 55.0%
!! GTGGTGGTGGTGATGACGAA+AGG + chr7_3:71870065-71870084 None:intergenic 55.0%
AGGAGTGGGAATCGAGCACT+TGG - chr7_3:71870393-71870412 Msa1121740:intron 55.0%
GTCCTTGTTGGGGTGTGAGT+TGG + chr7_3:71871877-71871896 None:intergenic 55.0%
! GGGTAGCTCTGTGTCCTTGT+TGG + chr7_3:71871889-71871908 None:intergenic 55.0%
GAGACATCTCGAGGGGAAGA+CGG - chr7_3:71871977-71871996 Msa1121740:intron 55.0%
TCGAGGGGAAGACGGACAAA+GGG - chr7_3:71871985-71872004 Msa1121740:intron 55.0%
GTCCTGTGCTGGAATCGGTA+AGG + chr7_3:71872068-71872087 None:intergenic 55.0%
!! TACCGATTCCAGCACAGGAC+GGG - chr7_3:71872068-71872087 Msa1121740:intron 55.0%
! TTCTGGAGGCTTGCCTTCAG+TGG + chr7_3:71872096-71872115 None:intergenic 55.0%
AGTTTCCTGGGCTTAGGGTC+GGG + chr7_3:71872200-71872219 None:intergenic 55.0%
GAGTTTCCTGGGCTTAGGGT+CGG + chr7_3:71872201-71872220 None:intergenic 55.0%
! GAAACTGTTGGGCTAGGCCT+AGG - chr7_3:71872222-71872241 Msa1121740:intron 55.0%
! AACTGTTGGGCTAGGCCTAG+GGG - chr7_3:71872224-71872243 Msa1121740:intron 55.0%
TATCAGCTCTCTGGGTGGCT+GGG + chr7_3:71872266-71872285 None:intergenic 55.0%
CTGGCTGGTATCAGCTCTCT+GGG + chr7_3:71872274-71872293 None:intergenic 55.0%
ACTGGCTGGTATCAGCTCTC+TGG + chr7_3:71872275-71872294 None:intergenic 55.0%
GTTGAAAGCCGTCATCCCTC+TGG + chr7_3:71872723-71872742 None:intergenic 55.0%
CTGCCAGGAGTAGAGCAATC+TGG + chr7_3:71872756-71872775 None:intergenic 55.0%
! TGTGGCGGAGGAGGAAAGAG+AGG + chr7_3:71869990-71870009 None:intergenic 60.0%
GGCCAACTCACACCCCAACA+AGG - chr7_3:71871872-71871891 Msa1121740:intron 60.0%
CTCGAGGGGAAGACGGACAA+AGG - chr7_3:71871984-71872003 Msa1121740:intron 60.0%
AGGGGAAGACGGACAAAGGG+AGG - chr7_3:71871988-71872007 Msa1121740:intron 60.0%
! TTGTGGTGGAGTCGAGCCTG+AGG + chr7_3:71872043-71872062 None:intergenic 60.0%
AGCCCGTCCTGTGCTGGAAT+CGG + chr7_3:71872073-71872092 None:intergenic 60.0%
GTTTCCTGGGCTTAGGGTCG+GGG + chr7_3:71872199-71872218 None:intergenic 60.0%
GTATCAGCTCTCTGGGTGGC+TGG + chr7_3:71872267-71872286 None:intergenic 60.0%
GCTGGTATCAGCTCTCTGGG+TGG + chr7_3:71872271-71872290 None:intergenic 60.0%
! TGGGGTGTGAGTTGGCCCTC+AGG + chr7_3:71871869-71871888 None:intergenic 65.0%
TGAGGCTGTCTGCGTGGTGG+GGG + chr7_3:71872025-71872044 None:intergenic 65.0%
CTGAGGCTGTCTGCGTGGTG+GGG + chr7_3:71872026-71872045 None:intergenic 65.0%
CCTGAGGCTGTCTGCGTGGT+GGG + chr7_3:71872027-71872046 None:intergenic 65.0%
! CACAGGACGGGCTCCACTGA+AGG - chr7_3:71872080-71872099 Msa1121740:intron 65.0%
TCTTCCCCGACCCTAAGCCC+AGG - chr7_3:71872192-71872211 Msa1121740:CDS 65.0%
GCTCTCTGGGTGGCTGGGTT+GGG + chr7_3:71872261-71872280 None:intergenic 65.0%
AGCTCTCTGGGTGGCTGGGT+TGG + chr7_3:71872262-71872281 None:intergenic 65.0%
GATGCGGTGGAGTGTGGCGG+AGG + chr7_3:71870002-71870021 None:intergenic 70.0%
! GCTGTCTGCGTGGTGGGGGT+GGG + chr7_3:71872021-71872040 None:intergenic 70.0%
CCCACCACGCAGACAGCCTC+AGG - chr7_3:71872024-71872043 Msa1121740:intron 70.0%
GCCTGAGGCTGTCTGCGTGG+TGG + chr7_3:71872028-71872047 None:intergenic 70.0%
CGAGCCTGAGGCTGTCTGCG+TGG + chr7_3:71872031-71872050 None:intergenic 70.0%
CAGTGGAGCCCGTCCTGTGC+TGG + chr7_3:71872079-71872098 None:intergenic 70.0%
! GCGGTGGAGTGTGGCGGAGG+AGG + chr7_3:71869999-71870018 None:intergenic 75.0%
! GGCTGTCTGCGTGGTGGGGG+TGG + chr7_3:71872022-71872041 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71869548 71873211 71869548 ID=Msa1121740;Name=Msa1121740
chr7_3 mRNA 71869548 71873211 71869548 ID=Msa1121740-mRNA-1;Parent=Msa1121740;Name=Msa1121740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=194|1|1|1|0.6|0.5|6|395|312
chr7_3 exon 71869548 71870044 71869548 ID=Msa1121740-mRNA-1:exon:18506;Parent=Msa1121740-mRNA-1
chr7_3 exon 71871121 71871474 71871121 ID=Msa1121740-mRNA-1:exon:18505;Parent=Msa1121740-mRNA-1
chr7_3 exon 71872150 71872230 71872150 ID=Msa1121740-mRNA-1:exon:18504;Parent=Msa1121740-mRNA-1
chr7_3 exon 71872316 71872551 71872316 ID=Msa1121740-mRNA-1:exon:18503;Parent=Msa1121740-mRNA-1
chr7_3 exon 71872659 71872998 71872659 ID=Msa1121740-mRNA-1:exon:18502;Parent=Msa1121740-mRNA-1
chr7_3 exon 71873192 71873211 71873192 ID=Msa1121740-mRNA-1:exon:18501;Parent=Msa1121740-mRNA-1
chr7_3 five_prime_UTR 71873192 71873211 71873192 ID=Msa1121740-mRNA-1:five_prime_utr;Parent=Msa1121740-mRNA-1
chr7_3 five_prime_UTR 71872825 71872998 71872825 ID=Msa1121740-mRNA-1:five_prime_utr;Parent=Msa1121740-mRNA-1
chr7_3 CDS 71872659 71872824 71872659 ID=Msa1121740-mRNA-1:cds;Parent=Msa1121740-mRNA-1
chr7_3 CDS 71872316 71872551 71872316 ID=Msa1121740-mRNA-1:cds;Parent=Msa1121740-mRNA-1
chr7_3 CDS 71872150 71872230 71872150 ID=Msa1121740-mRNA-1:cds;Parent=Msa1121740-mRNA-1
chr7_3 CDS 71871121 71871474 71871121 ID=Msa1121740-mRNA-1:cds;Parent=Msa1121740-mRNA-1
chr7_3 CDS 71869943 71870044 71869943 ID=Msa1121740-mRNA-1:cds;Parent=Msa1121740-mRNA-1
chr7_3 three_prime_UTR 71869548 71869942 71869548 ID=Msa1121740-mRNA-1:three_prime_utr;Parent=Msa1121740-mRNA-1
Gene Sequence

>Msa1121740

ATGAATCTCACACCCGCACTTTCTTGTCCTTGTTCTCTCGCCGCTACTTCTTCCTCTCTTTCCTCCTCCGCCACACTCCACCGCATCAATACATCCAACATAGTAGTACGCACATGCACACCCTTCTCCTTTCGTCATCACCACCACCACTCTTCTTCATTGCGAGTTGCCAATGATGCTGATAGGACCGAACTATCATCTGATACCACAACTGAAAAATCATATTCAGATGCTGCTGATAAAATGGTTGATAGTATGAACTTTGGTGAGCTATGTAATGAGTTTGAGTGCAATAGTAGTCCCTCGGTTGAATCCACTGCAAGACAACTTGCTCGTGATATATTTGAGCTAAGGAGTGGGAATCGAGCACTTGGAACCTATGCTGTTTCTGTCACTTACAAGGATCCTATCAGGAGTTTTAGTGGTCGTGAAAAGTATAAGAGACCTCTATGGGCTATCACTGCACTTGAAAACCCATCTGTGACTGTACAGGAAATGACTATGCTGTCAACAAGTGTTTTAAGTATCAAGTGGACAGTTAGAGGGAAGCCTAAATCTGTTCTAGCTGGTGTAGGAGGAGATCTCATACTTAGAGTTACTTCCAAATTTACGCTTAACCAAATTAGTGGACAAGTCATTCAGCATGAAGAATTATGGGACTTATCATCTTCACCTGCTAGTGCTCAGGCATTTTTCTGGTCATCGCGTGTTCTGTTTGCTACGGTTGAATCTGTGAAAGATTTGGCTGATAGTGCCAAGAATTTGAGTGCTAATTTTTCACCCAAGAAAGAAGAGAACTCTGATATTTATCCAGATCCTTCTGGTGATCCAACCAAGTTCTTCCAGAGGGATGACGGCTTTCAACAAGATGTACTCCAGATTGCTCTACTCCTGGCAGTTATATATTTTGTGGTACAAGCTCTGAGGATAACTTTGTAA

Protein sequence

>Msa1121740

MNLTPALSCPCSLAATSSSLSSSATLHRINTSNIVVRTCTPFSFRHHHHHSSSLRVANDADRTELSSDTTTEKSYSDAADKMVDSMNFGELCNEFECNSSPSVESTARQLARDIFELRSGNRALGTYAVSVTYKDPIRSFSGREKYKRPLWAITALENPSVTVQEMTMLSTSVLSIKWTVRGKPKSVLAGVGGDLILRVTSKFTLNQISGQVIQHEELWDLSSSPASAQAFFWSSRVLFATVESVKDLADSAKNLSANFSPKKEENSDIYPDPSGDPTKFFQRDDGFQQDVLQIALLLAVIYFVVQALRITL*