AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016399.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016399.01.T01 MTR_3g088645 100.000 116 0 0 1 116 83 198 7.27e-85 250
MsG0380016399.01.T01 MTR_3g088650 97.222 72 2 0 131 202 17 88 7.96e-42 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016399.01.T01 AT4G37925 82.301 113 20 0 4 116 84 196 5.65e-69 210
MsG0380016399.01.T01 AT5G52560 60.674 89 31 1 118 202 11 99 3.43e-27 108

Find 57 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTCTATTCTTACTTTC+AGG 0.183071 3:+82936601 MsG0380016399.01.T01:CDS
TGATCAAAAGCACTAGTTTC+TGG 0.223907 3:-82936506 None:intergenic
CATCAGTAGGATCAAGAATA+AGG 0.246691 3:-82936550 None:intergenic
CAAGGCATGACCAGGGAATA+TGG 0.310643 3:+82936425 None:intergenic
AAAAGGGTTATTTCCAGCTT+TGG 0.318368 3:-82940495 None:intergenic
TAGACCAAGTTGCAAGTATC+AGG 0.336990 3:-82936587 None:intergenic
TTCCAGCTACCCTGGTGGTT+TGG 0.337272 3:+82940433 MsG0380016399.01.T01:CDS
TCTCAAGTACTAGCATCTTC+AGG 0.379337 3:-82937300 None:intergenic
GAATACACACTTCGGTTGAT+TGG 0.380394 3:+82937151 MsG0380016399.01.T01:CDS
TTCTTACTTTCAGGAGCTTG+TGG 0.404103 3:+82936610 MsG0380016399.01.T01:CDS
GAAGAAAGCCTTCTTCGATC+AGG 0.408995 3:+82940305 MsG0380016399.01.T01:CDS
TTCTCGTCGTCGTCGACGCC+GGG 0.415672 3:-82940285 None:intergenic
ATAAGAAAGTTGTTATATGA+TGG 0.419220 3:+82937193 MsG0380016399.01.T01:CDS
TCGTCGTCGACGCCGGGTGC+CGG 0.422604 3:-82940279 None:intergenic
GGAATCAGCCAAGAGTCGTT+TGG 0.429832 3:-82940474 None:intergenic
TTCCAAACCACCAGGGTAGC+TGG 0.430218 3:-82940435 None:intergenic
CTTCTCGTCGTCGTCGACGC+CGG 0.444417 3:-82940286 None:intergenic
CGAAGTGTGTATTCATTCAA+TGG 0.452108 3:-82937142 None:intergenic
ATTGTTGTTGAACATGATCC+TGG 0.455088 3:-82937268 None:intergenic
CAATAACGCCAAACGACTCT+TGG 0.455775 3:+82940466 MsG0380016399.01.T01:CDS
CTCTTGGCTGATTCCAAAGC+TGG 0.455807 3:+82940482 MsG0380016399.01.T01:CDS
GTGCCGGCCAATCGCGGAAG+AGG 0.464249 3:-82940263 None:intergenic
CCACCTCTTCCGCGATTGGC+CGG 0.471846 3:+82940260 MsG0380016399.01.T01:CDS
GGAAGGGTGAAGCCATCAAA+AGG 0.473802 3:-82940512 None:intergenic
AATCGCGGAAGAGGTGGTCT+TGG 0.474606 3:-82940254 None:intergenic
AAGACCACCTCTTCCGCGAT+TGG 0.482731 3:+82940256 MsG0380016399.01.T01:CDS
CTACTTGATTCCAGCTACCC+TGG 0.491817 3:+82940425 MsG0380016399.01.T01:CDS
AATTTCAGCATGGGGAAGCC+AGG 0.494714 3:+82937250 MsG0380016399.01.T01:CDS
ATCAGTAGGATCAAGAATAA+GGG 0.496505 3:-82936549 None:intergenic
CGCCGGGTGCCGGCCAATCG+CGG 0.508300 3:-82940269 None:intergenic
TTCCGCGATTGGCCGGCACC+CGG 0.510394 3:+82940267 MsG0380016399.01.T01:CDS
TAAAAGATCAAGGCATGACC+AGG 0.521510 3:+82936417 None:intergenic
TCAAGTATAATATGAATGCA+AGG 0.530324 3:+82937221 MsG0380016399.01.T01:CDS
TCGATTCATTCAGCAAGAGT+TGG 0.533239 3:+82940209 MsG0380016399.01.T01:intron
AATGGAAACCTGATCGAAGA+AGG 0.553363 3:-82940313 None:intergenic
CCGGCCAATCGCGGAAGAGG+TGG 0.554666 3:-82940260 None:intergenic
CCACTGTCCTCCATATTCCC+TGG 0.567133 3:-82936435 None:intergenic
AGGGTTCTGAATTTCAGCAT+GGG 0.568039 3:+82937241 MsG0380016399.01.T01:CDS
CAAGTATAATATGAATGCAA+GGG 0.571561 3:+82937222 MsG0380016399.01.T01:CDS
ATCCTACTGATGAGTTTGTG+TGG 0.588183 3:+82936561 MsG0380016399.01.T01:CDS
AAGGGTTCTGAATTTCAGCA+TGG 0.591866 3:+82937240 MsG0380016399.01.T01:CDS
GAATCCTGATACTTGCAACT+TGG 0.593694 3:+82936583 MsG0380016399.01.T01:CDS
GGAGCTTGTGGATCACTATG+AGG 0.594812 3:+82936622 MsG0380016399.01.T01:CDS
AAGTACTAGCATCTTCAGGT+TGG 0.600680 3:-82937296 None:intergenic
GAAGGGTGAAGCCATCAAAA+GGG 0.603795 3:-82940511 None:intergenic
GTATAATTGTGACTTACGGA+AGG 0.606240 3:-82940529 None:intergenic
ATATATGATTCCAAACCACC+AGG 0.606651 3:-82940443 None:intergenic
CATTGAATGAATACACACTT+CGG 0.613957 3:+82937143 MsG0380016399.01.T01:CDS
CTTGATTCCAGCTACCCTGG+TGG 0.614985 3:+82940428 MsG0380016399.01.T01:CDS
GGGTTCTGAATTTCAGCATG+GGG 0.628137 3:+82937242 MsG0380016399.01.T01:CDS
TATAATTGTGACTTACGGAA+GGG 0.640460 3:-82940528 None:intergenic
TTCCACACAAACTCATCAGT+AGG 0.644633 3:-82936563 None:intergenic
TATATGATTCCAAACCACCA+GGG 0.701612 3:-82940442 None:intergenic
AAAAGATCAAGGCATGACCA+GGG 0.707335 3:+82936418 None:intergenic
CCAGGGAATATGGAGGACAG+TGG 0.721629 3:+82936435 MsG0380016399.01.T01:CDS
GCTGTGCTACGCGACATGTG+AGG 0.741981 3:+82936462 MsG0380016399.01.T01:CDS
GGCATGACCAGGGAATATGG+AGG 0.766490 3:+82936428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATATTTAAATTGTT+AGG + Chr3:82939762-82939781 MsG0380016399.01.T01:intron 10.0%
!!! AATCTTAATTTAAAATCTTA+GGG + Chr3:82937835-82937854 MsG0380016399.01.T01:intron 10.0%
!! AAGAAAATGTATATAAGTAA+GGG + Chr3:82938687-82938706 MsG0380016399.01.T01:intron 15.0%
!! AATAACATATTATCTTATAG+GGG - Chr3:82939583-82939602 None:intergenic 15.0%
!! AGAATAACATATTATCTTAT+AGG - Chr3:82939585-82939604 None:intergenic 15.0%
!! ATATAATTCTAACACTTAAT+TGG - Chr3:82937091-82937110 None:intergenic 15.0%
!! CTAAATCTAATTTAACATAA+TGG - Chr3:82938789-82938808 None:intergenic 15.0%
!! GAATAACATATTATCTTATA+GGG - Chr3:82939584-82939603 None:intergenic 15.0%
!! TATGTTAAATTAGATTTAGA+GGG + Chr3:82938790-82938809 MsG0380016399.01.T01:intron 15.0%
!! TGTATATTTGATTATGTTTA+AGG - Chr3:82936654-82936673 None:intergenic 15.0%
!! TTAAAATTAAATGACTAATC+TGG - Chr3:82938395-82938414 None:intergenic 15.0%
!! TTATGTTAAATTAGATTTAG+AGG + Chr3:82938789-82938808 MsG0380016399.01.T01:intron 15.0%
!!! CAATCTTAATTTAAAATCTT+AGG + Chr3:82937834-82937853 MsG0380016399.01.T01:intron 15.0%
!!! CTAAGATTTTAAATTAAGAT+TGG - Chr3:82937836-82937855 None:intergenic 15.0%
!!! TACATATCTTTTAAACTATT+AGG - Chr3:82937604-82937623 None:intergenic 15.0%
!! AATAATCAAAGAATCAAACT+CGG + Chr3:82937642-82937661 MsG0380016399.01.T01:intron 20.0%
!! AATATTGAGTAATATACAAG+TGG - Chr3:82937881-82937900 None:intergenic 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG + Chr3:82937193-82937212 MsG0380016399.01.T01:CDS 20.0%
!! ATATATGTTCATTAATCAGA+AGG + Chr3:82939335-82939354 MsG0380016399.01.T01:intron 20.0%
!! ATATTGAGTAATATACAAGT+GGG - Chr3:82937880-82937899 None:intergenic 20.0%
!! CAAAAATCAGAAATGTTTAT+TGG - Chr3:82940185-82940204 None:intergenic 20.0%
!! GAAGAAAATGTATATAAGTA+AGG + Chr3:82938686-82938705 MsG0380016399.01.T01:intron 20.0%
!! GCAAAAAAAATATCAATACA+AGG + Chr3:82936761-82936780 MsG0380016399.01.T01:intron 20.0%
!! TATATGTTCATTAATCAGAA+GGG + Chr3:82939336-82939355 MsG0380016399.01.T01:intron 20.0%
!! TATCTGATCATTTAATATTG+AGG - Chr3:82939633-82939652 None:intergenic 20.0%
!! TTAAAAGATATGTAAGAAAG+AGG + Chr3:82937610-82937629 MsG0380016399.01.T01:intron 20.0%
!! TTCAATTTCAATTAGGAATT+AGG - Chr3:82938938-82938957 None:intergenic 20.0%
!! TTGATTCTTTGATTATTGAA+TGG - Chr3:82937639-82937658 None:intergenic 20.0%
!! TTTCAATAAAAAAAGAGTCA+AGG + Chr3:82939310-82939329 MsG0380016399.01.T01:intron 20.0%
!!! CTTTTGTTTCAATTTCAATT+AGG - Chr3:82938945-82938964 None:intergenic 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG + Chr3:82937115-82937134 MsG0380016399.01.T01:intron 20.0%
!!! TACATTTTCTTCTTACTATT+TGG - Chr3:82938678-82938697 None:intergenic 20.0%
!!! TATTTTTGTCAAAAACAAGA+AGG + Chr3:82939506-82939525 MsG0380016399.01.T01:intron 20.0%
!!! TATTTTTGTCAAAAACAAGA+AGG - Chr3:82939525-82939506 None:intergenic 20.0%
! AAAACAAAAAAAACCCATCA+CGG - Chr3:82938887-82938906 None:intergenic 25.0%
! AACAATGGTATTAGAGTTAA+TGG - Chr3:82938059-82938078 None:intergenic 25.0%
! AGTCTGTGCTTAAAAATTTA+AGG + Chr3:82936793-82936812 MsG0380016399.01.T01:intron 25.0%
! AGTTGTTAATCTAAAAAGCT+AGG + Chr3:82937020-82937039 MsG0380016399.01.T01:intron 25.0%
! ATGTTTATTGGAATGTGAAA+AGG - Chr3:82940173-82940192 None:intergenic 25.0%
! ATTAACTCTAATACCATTGT+TGG + Chr3:82938058-82938077 MsG0380016399.01.T01:intron 25.0%
! CAAATGTAGAAAGAGAAAAT+GGG + Chr3:82939483-82939502 MsG0380016399.01.T01:intron 25.0%
! CAAGTATAATATGAATGCAA+GGG + Chr3:82937222-82937241 MsG0380016399.01.T01:CDS 25.0%
! CTTATTGCTTATTGCTTTAA+CGG + Chr3:82939091-82939110 MsG0380016399.01.T01:intron 25.0%
! CTTGCATCCATAAAAAAATT+GGG + Chr3:82939042-82939061 MsG0380016399.01.T01:intron 25.0%
! GTCTAATGTAAAAATCTATC+AGG - Chr3:82938105-82938124 None:intergenic 25.0%
! GTGAAGATACTATTGAAAAA+TGG + Chr3:82940231-82940250 MsG0380016399.01.T01:CDS 25.0%
! TATCTAAGTTGTTAGTATGT+GGG + Chr3:82939854-82939873 MsG0380016399.01.T01:intron 25.0%
! TCAAGTATAATATGAATGCA+AGG + Chr3:82937221-82937240 MsG0380016399.01.T01:CDS 25.0%
! TTAGACCAATAACAATCAAA+CGG + Chr3:82938119-82938138 MsG0380016399.01.T01:intron 25.0%
! TTAGAGTTAATGGTTACTAA+AGG - Chr3:82938049-82938068 None:intergenic 25.0%
! TTATCTAAGTTGTTAGTATG+TGG + Chr3:82939853-82939872 MsG0380016399.01.T01:intron 25.0%
! TTCAAAAAACTACGATTCAT+AGG + Chr3:82938556-82938575 MsG0380016399.01.T01:intron 25.0%
!! AAGAAATTTGGTTCAATTGA+GGG - Chr3:82938992-82939011 None:intergenic 25.0%
!! ACTAGTTCTCATAGAAATTT+GGG + Chr3:82939819-82939838 MsG0380016399.01.T01:intron 25.0%
!! CATTTTCTCTTTCTACATTT+GGG - Chr3:82939484-82939503 None:intergenic 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG - Chr3:82937117-82937136 None:intergenic 25.0%
!! TAACCTTAACCTTTAGAAAA+TGG + Chr3:82939145-82939164 MsG0380016399.01.T01:intron 25.0%
!! TAAGAAATTTGGTTCAATTG+AGG - Chr3:82938993-82939012 None:intergenic 25.0%
!! TTCAGAAATGTTTTCAATTG+AGG - Chr3:82939249-82939268 None:intergenic 25.0%
!!! ATATAAACACTTTTTGACTG+AGG - Chr3:82938498-82938517 None:intergenic 25.0%
!!! ATGAATCGTAGTTTTTTGAA+GGG - Chr3:82938556-82938575 None:intergenic 25.0%
!!! ATGTTGACCCAATTTTTTTA+TGG - Chr3:82939052-82939071 None:intergenic 25.0%
!!! ATTTTTTGCCTAAGCTATAA+GGG - Chr3:82938343-82938362 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG + Chr3:82937114-82937133 MsG0380016399.01.T01:intron 25.0%
!!! CTAGTTAAAGGTGAATTTTT+TGG + Chr3:82936853-82936872 MsG0380016399.01.T01:intron 25.0%
!!! TATGAATCGTAGTTTTTTGA+AGG - Chr3:82938557-82938576 None:intergenic 25.0%
!!! TCAGTCAAAAAGTGTTTATA+TGG + Chr3:82938497-82938516 MsG0380016399.01.T01:intron 25.0%
!!! TTTTGAGAGGAATTCAATTT+TGG - Chr3:82939225-82939244 None:intergenic 25.0%
AGAGAGAATGTTAATAGAAG+TGG + Chr3:82939429-82939448 MsG0380016399.01.T01:intron 30.0%
AGTGTTTATATGGACGTTTA+CGG + Chr3:82938507-82938526 MsG0380016399.01.T01:intron 30.0%
ATAATTCAAGACTAGCATGT+AGG + Chr3:82936706-82936725 MsG0380016399.01.T01:intron 30.0%
ATATGTTGTCACAAATTGCA+AGG - Chr3:82939122-82939141 None:intergenic 30.0%
ATCAGTAGGATCAAGAATAA+GGG - Chr3:82936552-82936571 None:intergenic 30.0%
ATCTAAGTTGTTAGTATGTG+GGG + Chr3:82939855-82939874 MsG0380016399.01.T01:intron 30.0%
CAAATTTCTATGAGAACTAG+TGG - Chr3:82939820-82939839 None:intergenic 30.0%
CATTGAATGAATACACACTT+CGG + Chr3:82937143-82937162 MsG0380016399.01.T01:CDS 30.0%
CCAAATGTAGAAAGAGAAAA+TGG + Chr3:82939482-82939501 MsG0380016399.01.T01:intron 30.0%
CCATGAAAATTGCTCTTTAA+TGG - Chr3:82938280-82938299 None:intergenic 30.0%
CTATCTATCTATCTATGCAA+TGG - Chr3:82940334-82940353 None:intergenic 30.0%
CTGATCATTTAATATTGAGG+TGG - Chr3:82939630-82939649 None:intergenic 30.0%
GCATATATTCTATGACTTCA+AGG - Chr3:82938454-82938473 None:intergenic 30.0%
GCTTGCATCCATAAAAAAAT+TGG + Chr3:82939041-82939060 MsG0380016399.01.T01:intron 30.0%
GGTACAAACGTTAAACTTAA+AGG - Chr3:82938374-82938393 None:intergenic 30.0%
GTAAAAATCTATCAGGATTC+AGG - Chr3:82938098-82938117 None:intergenic 30.0%
GTTGTCATACTATTGTCTTA+AGG - Chr3:82938173-82938192 None:intergenic 30.0%
TAATCTAAAAAGCTAGGAGA+AGG + Chr3:82937026-82937045 MsG0380016399.01.T01:intron 30.0%
TACTATTGTCTTAAGGTTTG+AGG - Chr3:82938166-82938185 None:intergenic 30.0%
TAGACCAATAACAATCAAAC+GGG + Chr3:82938120-82938139 MsG0380016399.01.T01:intron 30.0%
TCATGGATGAATTAGATGAA+TGG + Chr3:82938294-82938313 MsG0380016399.01.T01:intron 30.0%
TGTCTGAAAGGTAAATAAAG+TGG - Chr3:82936923-82936942 None:intergenic 30.0%
TTTAAACTATTAGGTCGAGT+TGG - Chr3:82937595-82937614 None:intergenic 30.0%
TTTACCTTTCAGACAAACTT+CGG + Chr3:82936928-82936947 MsG0380016399.01.T01:intron 30.0%
! ACACAATAGCATCATTTTAG+TGG - Chr3:82939291-82939310 None:intergenic 30.0%
! AGTATGACAACATAACTTGT+TGG + Chr3:82938182-82938201 MsG0380016399.01.T01:intron 30.0%
! CACTAGTTCTCATAGAAATT+TGG + Chr3:82939818-82939837 MsG0380016399.01.T01:intron 30.0%
! CCATTAAAGAGCAATTTTCA+TGG + Chr3:82938277-82938296 MsG0380016399.01.T01:intron 30.0%
! CCATTTTCTCTTTCTACATT+TGG - Chr3:82939485-82939504 None:intergenic 30.0%
! TGGTGTCAAACTCATTTATA+AGG - Chr3:82937816-82937835 None:intergenic 30.0%
! TTTCAATTGAGGATTTTGAG+AGG - Chr3:82939238-82939257 None:intergenic 30.0%
! TTTTGTCAAAAACAAGAAGG+TGG + Chr3:82939509-82939528 MsG0380016399.01.T01:intron 30.0%
! TTTTGTCAAAAACAAGAAGG+TGG - Chr3:82939528-82939509 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG - Chr3:82936706-82936725 None:intergenic 30.0%
!! CACAATAGCATCATTTTAGT+GGG - Chr3:82939290-82939309 None:intergenic 30.0%
!! GATCCATTTTCTAAAGGTTA+AGG - Chr3:82939151-82939170 None:intergenic 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG - Chr3:82937345-82937364 None:intergenic 30.0%
!!! GAAGAATGTCATTTTTGAGA+TGG - Chr3:82937716-82937735 None:intergenic 30.0%
!!! GATTTTTTGCCTAAGCTATA+AGG - Chr3:82938344-82938363 None:intergenic 30.0%
AAAAAAAACCCATCACGGAT+GGG - Chr3:82938882-82938901 None:intergenic 35.0%
AAAAGACAAGACAACAACGT+AGG - Chr3:82940020-82940039 None:intergenic 35.0%
AATGCACACCTTCATGAAAA+AGG - Chr3:82939559-82939540 None:intergenic 35.0%
AATGCACACCTTCATGAAAA+GGG + Chr3:82939540-82939559 MsG0380016399.01.T01:intron 35.0%
AATGTTAAAATTGTCGCCGA+GGG - Chr3:82940112-82940131 None:intergenic 35.0%
ACCTCAAAAACATCTGATCT+TGG - Chr3:82937460-82937479 None:intergenic 35.0%
ATACCATTGTTGGATCATCA+AGG + Chr3:82938068-82938087 MsG0380016399.01.T01:intron 35.0%
ATATATGATTCCAAACCACC+AGG - Chr3:82940446-82940465 None:intergenic 35.0%
ATCCAATGTGATGTTCAACT+GGG - Chr3:82937784-82937803 None:intergenic 35.0%
ATTCTATGACTTCAAGGACT+AGG - Chr3:82938448-82938467 None:intergenic 35.0%
CATCAGTAGGATCAAGAATA+AGG - Chr3:82936553-82936572 None:intergenic 35.0%
CGAAGTGTGTATTCATTCAA+TGG - Chr3:82937145-82937164 None:intergenic 35.0%
CTCATATTAAGCACTTGCAT+TGG - Chr3:82937491-82937510 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG + Chr3:82936601-82936620 MsG0380016399.01.T01:CDS 35.0%
GAAAGTCTTTCTGACAACTA+TGG - Chr3:82938009-82938028 None:intergenic 35.0%
GAAATGATTGAGAGTTCAAG+TGG + Chr3:82936820-82936839 MsG0380016399.01.T01:intron 35.0%
GGTTTGACAGCTAAGAAATT+TGG - Chr3:82939004-82939023 None:intergenic 35.0%
GTGAGTTAGAAGTCTCATAA+TGG - Chr3:82937915-82937934 None:intergenic 35.0%
TAATGCACACCTTCATGAAA+AGG + Chr3:82939539-82939558 MsG0380016399.01.T01:intron 35.0%
TATATGATTCCAAACCACCA+GGG - Chr3:82940445-82940464 None:intergenic 35.0%
TCACCTTCAGTTTCTTAACT+GGG - Chr3:82939901-82939920 None:intergenic 35.0%
TCAGAAAGACTTTCGATACA+AGG + Chr3:82938015-82938034 MsG0380016399.01.T01:intron 35.0%
TGCTCTTTAATGGTGTATAG+TGG - Chr3:82938270-82938289 None:intergenic 35.0%
TGGATGAATTAGATGAATGG+TGG + Chr3:82938297-82938316 MsG0380016399.01.T01:intron 35.0%
TTAAACAACCACTTTGTTGC+AGG - Chr3:82939402-82939421 None:intergenic 35.0%
TTCACCTTCAGTTTCTTAAC+TGG - Chr3:82939902-82939921 None:intergenic 35.0%
TTGGAATGTACTTCTCATCA+AGG - Chr3:82938232-82938251 None:intergenic 35.0%
! AAAAGGGTTATTTCCAGCTT+TGG - Chr3:82940498-82940517 None:intergenic 35.0%
! AATTTGGTTCAATTGAGGGA+AGG - Chr3:82938988-82939007 None:intergenic 35.0%
! ATTGTTGTTGAACATGATCC+TGG - Chr3:82937271-82937290 None:intergenic 35.0%
! CTACATATTTTGCTAAGCAG+AGG - Chr3:82936732-82936751 None:intergenic 35.0%
! GTTAGAAGTCTCATAATGGA+TGG - Chr3:82937911-82937930 None:intergenic 35.0%
! TGCTTTTGATCAAACTCAGA+TGG + Chr3:82936517-82936536 MsG0380016399.01.T01:CDS 35.0%
! TTGATGAGAAGTACATTCCA+AGG + Chr3:82938231-82938250 MsG0380016399.01.T01:intron 35.0%
! TTTTTATGGATGCAAGCAAG+AGG - Chr3:82939038-82939057 None:intergenic 35.0%
!! AACATAACTTGTTGGCACTT+GGG + Chr3:82938190-82938209 MsG0380016399.01.T01:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG + Chr3:82936841-82936860 MsG0380016399.01.T01:intron 35.0%
!! GTGTATAGTGGTGTTGATTT+GGG - Chr3:82938258-82938277 None:intergenic 35.0%
!! TCCAAGATCAGATGTTTTTG+AGG + Chr3:82937456-82937475 MsG0380016399.01.T01:intron 35.0%
!! TGATCAAAAGCACTAGTTTC+TGG - Chr3:82936509-82936528 None:intergenic 35.0%
AACCACTTTGTTGCAGGTTA+GGG - Chr3:82939396-82939415 None:intergenic 40.0%
AACTCTTGCTGAATGAATCG+AGG - Chr3:82940210-82940229 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG - Chr3:82937299-82937318 None:intergenic 40.0%
AATGGAAACCTGATCGAAGA+AGG - Chr3:82940316-82940335 None:intergenic 40.0%
AATGTGATGTTCAACTGGGA+TGG - Chr3:82937780-82937799 None:intergenic 40.0%
AATTGCCACCCTTATAGCTT+AGG + Chr3:82938332-82938351 MsG0380016399.01.T01:intron 40.0%
AGACAAACTTCGGATTGTCA+AGG + Chr3:82936938-82936957 MsG0380016399.01.T01:intron 40.0%
AGGTTAGAGAGAGAGAGTAA+AGG - Chr3:82940153-82940172 None:intergenic 40.0%
ATCCCAGTTGAACATCACAT+TGG + Chr3:82937779-82937798 MsG0380016399.01.T01:intron 40.0%
ATCCTACTGATGAGTTTGTG+TGG + Chr3:82936561-82936580 MsG0380016399.01.T01:CDS 40.0%
ATTCCAATTCCATTCCACCA+TGG + Chr3:82940080-82940099 MsG0380016399.01.T01:intron 40.0%
CAAAAAAAACCCATCACGGA+TGG - Chr3:82938883-82938902 None:intergenic 40.0%
CAATCCGAAGTTTGTCTGAA+AGG - Chr3:82936935-82936954 None:intergenic 40.0%
CACACCTTCATGAAAAAGGT+GGG - Chr3:82938728-82938747 None:intergenic 40.0%
CTCACCCGTTTGATTGTTAT+TGG - Chr3:82938127-82938146 None:intergenic 40.0%
GAATACACACTTCGGTTGAT+TGG + Chr3:82937151-82937170 MsG0380016399.01.T01:CDS 40.0%
GAATCCTGATACTTGCAACT+TGG + Chr3:82936583-82936602 MsG0380016399.01.T01:CDS 40.0%
GAATGTTAAAATTGTCGCCG+AGG - Chr3:82940113-82940132 None:intergenic 40.0%
GACTAAGAATTGTTCTCGTC+AGG - Chr3:82936897-82936916 None:intergenic 40.0%
GAGAGTAAAGGAACCTGTTT+CGG - Chr3:82940141-82940160 None:intergenic 40.0%
GATCCAATGTGATGTTCAAC+TGG - Chr3:82937785-82937804 None:intergenic 40.0%
TAGACCAAGTTGCAAGTATC+AGG - Chr3:82936590-82936609 None:intergenic 40.0%
TCGATTCATTCAGCAAGAGT+TGG + Chr3:82940209-82940228 MsG0380016399.01.T01:intron 40.0%
TCTCAAGTACTAGCATCTTC+AGG - Chr3:82937303-82937322 None:intergenic 40.0%
TGAGATGGATGTCAAGTTTG+TGG - Chr3:82937701-82937720 None:intergenic 40.0%
TTCCACACAAACTCATCAGT+AGG - Chr3:82936566-82936585 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG + Chr3:82936610-82936629 MsG0380016399.01.T01:CDS 40.0%
! CTTCCTTGATGATCCAACAA+TGG - Chr3:82938074-82938093 None:intergenic 40.0%
! GAGAACTAGTGGATAAGTAG+AGG - Chr3:82939809-82939828 None:intergenic 40.0%
! GCTGGAAATAACCCTTTTGA+TGG + Chr3:82940500-82940519 MsG0380016399.01.T01:CDS 40.0%
! TTTTGCCTAAGCTATAAGGG+TGG - Chr3:82938340-82938359 None:intergenic 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG + Chr3:82937240-82937259 MsG0380016399.01.T01:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG + Chr3:82937241-82937260 MsG0380016399.01.T01:CDS 40.0%
!! AGGTTGATGGAAAAGGGTAA+CGG - Chr3:82938478-82938497 None:intergenic 40.0%
!! CAACATAACTTGTTGGCACT+TGG + Chr3:82938189-82938208 MsG0380016399.01.T01:intron 40.0%
!! CACTTTTTGACTGAGGTTGA+TGG - Chr3:82938491-82938510 None:intergenic 40.0%
!! GGTGTATAGTGGTGTTGATT+TGG - Chr3:82938259-82938278 None:intergenic 40.0%
!! TGACTGAGGTTGATGGAAAA+GGG - Chr3:82938484-82938503 None:intergenic 40.0%
!! TTGACTGAGGTTGATGGAAA+AGG - Chr3:82938485-82938504 None:intergenic 40.0%
AAGAAACTGAAGGTGAACCG+TGG + Chr3:82939905-82939924 MsG0380016399.01.T01:intron 45.0%
AATTGAGGGAAGGAGCTAGT+TGG - Chr3:82938978-82938997 None:intergenic 45.0%
AGATCGACATAGTTACCGAC+CGG + Chr3:82939955-82939974 MsG0380016399.01.T01:intron 45.0%
CAACCACTTTGTTGCAGGTT+AGG - Chr3:82939397-82939416 None:intergenic 45.0%
CAATAACGCCAAACGACTCT+TGG + Chr3:82940466-82940485 MsG0380016399.01.T01:CDS 45.0%
CACACCTTCATGAAAAGGGT+GGG + Chr3:82939544-82939563 MsG0380016399.01.T01:intron 45.0%
GAAGAAAGCCTTCTTCGATC+AGG + Chr3:82940305-82940324 MsG0380016399.01.T01:CDS 45.0%
GAAGGGTGAAGCCATCAAAA+GGG - Chr3:82940514-82940533 None:intergenic 45.0%
GACAAGACAACAACGTAGGT+AGG - Chr3:82940016-82940035 None:intergenic 45.0%
GAGAAGAAGTCAACGGAAGA+TGG - Chr3:82938854-82938873 None:intergenic 45.0%
GCACACCTTCATGAAAAAGG+TGG - Chr3:82938729-82938748 None:intergenic 45.0%
GGATGTGGAGAAGAAGTCAA+CGG - Chr3:82938861-82938880 None:intergenic 45.0%
TAACATTCTCTCGCCGAAAC+AGG + Chr3:82940125-82940144 MsG0380016399.01.T01:intron 45.0%
TTCAATCTCACCTCAAGCCA+CGG - Chr3:82939925-82939944 None:intergenic 45.0%
TTCCCTAACCTGCAACAAAG+TGG + Chr3:82939391-82939410 MsG0380016399.01.T01:intron 45.0%
TTGTTAGGCAACGCTGTGAT+AGG + Chr3:82939777-82939796 MsG0380016399.01.T01:intron 45.0%
! AAGCAAGAGGCTTGTTCACT+TGG - Chr3:82939025-82939044 None:intergenic 45.0%
! AAGCCATGGTGGAATGGAAT+TGG - Chr3:82940086-82940105 None:intergenic 45.0%
! CGCTGGGATCCATTTTCTAA+AGG - Chr3:82939157-82939176 None:intergenic 45.0%
!! CACACCCACCTTTTTCATGA+AGG + Chr3:82938721-82938740 MsG0380016399.01.T01:intron 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG + Chr3:82937242-82937261 MsG0380016399.01.T01:CDS 45.0%
!!! AAATATTTATCTTTTAAATT+AGG + Chr3:82938644-82938663 MsG0380016399.01.T01:intron 5.0%
AATTTCAGCATGGGGAAGCC+AGG + Chr3:82937250-82937269 MsG0380016399.01.T01:CDS 50.0%
AGCCTTGACAATCCGCTTTC+AGG - Chr3:82936973-82936992 None:intergenic 50.0%
AGGCTTCGTTACCCTGAAAG+CGG + Chr3:82936958-82936977 MsG0380016399.01.T01:intron 50.0%
CCTGCAACAATGCTATCGCT+GGG - Chr3:82939173-82939192 None:intergenic 50.0%
CGCATCCATTCAATGTCACG+AGG + Chr3:82937748-82937767 MsG0380016399.01.T01:intron 50.0%
CTACTTGATTCCAGCTACCC+TGG + Chr3:82940425-82940444 MsG0380016399.01.T01:CDS 50.0%
GCACACCTTCATGAAAAGGG+TGG + Chr3:82939543-82939562 MsG0380016399.01.T01:intron 50.0%
GCATTGTTGCAGGCAGTACA+TGG + Chr3:82939180-82939199 MsG0380016399.01.T01:intron 50.0%
GCCTTGACAATCCGCTTTCA+GGG - Chr3:82936972-82936991 None:intergenic 50.0%
GCTCTCCTCGTGACATTGAA+TGG - Chr3:82937756-82937775 None:intergenic 50.0%
GGAAGGGTGAAGCCATCAAA+AGG - Chr3:82940515-82940534 None:intergenic 50.0%
GGAATCAGCCAAGAGTCGTT+TGG - Chr3:82940477-82940496 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG + Chr3:82936622-82936641 MsG0380016399.01.T01:CDS 50.0%
GGGCCCAGTTAAGAAACTGA+AGG + Chr3:82939895-82939914 MsG0380016399.01.T01:intron 50.0%
GTTAAAATTGTCGCCGAGGG+AGG - Chr3:82940109-82940128 None:intergenic 50.0%
TGTTTATTAGCGTGCCGTGC+CGG - Chr3:82939977-82939996 None:intergenic 50.0%
! CACACCCACCCTTTTCATGA+AGG - Chr3:82939551-82939570 None:intergenic 50.0%
! CTCTTGGCTGATTCCAAAGC+TGG + Chr3:82940482-82940501 MsG0380016399.01.T01:CDS 50.0%
!! ACCCTGAAAGCGGATTGTCA+AGG + Chr3:82936968-82936987 MsG0380016399.01.T01:intron 50.0%
!! GTGGTGTTGATTTGGGTCCT+TGG - Chr3:82938251-82938270 None:intergenic 50.0%
AACCCATCACGGATGGGATG+TGG - Chr3:82938876-82938895 None:intergenic 55.0%
AAGACCACCTCTTCCGCGAT+TGG + Chr3:82940256-82940275 MsG0380016399.01.T01:CDS 55.0%
AATCGCGGAAGAGGTGGTCT+TGG - Chr3:82940257-82940276 None:intergenic 55.0%
CCACTGTCCTCCATATTCCC+TGG - Chr3:82936438-82936457 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG + Chr3:82936435-82936454 MsG0380016399.01.T01:CDS 55.0%
CCCAGCGATAGCATTGTTGC+AGG + Chr3:82939170-82939189 MsG0380016399.01.T01:intron 55.0%
CTCCACATCCCATCCGTGAT+GGG + Chr3:82938871-82938890 MsG0380016399.01.T01:intron 55.0%
CTTGATTCCAGCTACCCTGG+TGG + Chr3:82940428-82940447 MsG0380016399.01.T01:CDS 55.0%
GACATAGTTACCGACCGGCA+CGG + Chr3:82939960-82939979 MsG0380016399.01.T01:intron 55.0%
GCCTGCAACAATGCTATCGC+TGG - Chr3:82939174-82939193 None:intergenic 55.0%
TCTCCACATCCCATCCGTGA+TGG + Chr3:82938870-82938889 MsG0380016399.01.T01:intron 55.0%
TGAAGGTGAACCGTGGCTTG+AGG + Chr3:82939912-82939931 MsG0380016399.01.T01:intron 55.0%
TTCCAAACCACCAGGGTAGC+TGG - Chr3:82940438-82940457 None:intergenic 55.0%
TTCCAGCTACCCTGGTGGTT+TGG + Chr3:82940433-82940452 MsG0380016399.01.T01:CDS 55.0%
GCTGTGCTACGCGACATGTG+AGG + Chr3:82936462-82936481 MsG0380016399.01.T01:CDS 60.0%
TCCACCATGGCTTCCTCCCT+CGG + Chr3:82940093-82940112 MsG0380016399.01.T01:intron 60.0%
! GGGAGGAAGCCATGGTGGAA+TGG - Chr3:82940092-82940111 None:intergenic 60.0%
! TATTAGCGTGCCGTGCCGGT+CGG - Chr3:82939973-82939992 None:intergenic 60.0%
CCACCTCTTCCGCGATTGGC+CGG + Chr3:82940260-82940279 MsG0380016399.01.T01:CDS 65.0%
CTTCTCGTCGTCGTCGACGC+CGG - Chr3:82940289-82940308 None:intergenic 65.0%
TTCTCGTCGTCGTCGACGCC+GGG - Chr3:82940288-82940307 None:intergenic 65.0%
! GGGTGCCACGTGCGTGGTAT+GGG + Chr3:82939875-82939894 MsG0380016399.01.T01:intron 65.0%
! TATGTGGGGTGCCACGTGCG+TGG + Chr3:82939869-82939888 MsG0380016399.01.T01:intron 65.0%
CCGGCCAATCGCGGAAGAGG+TGG - Chr3:82940263-82940282 None:intergenic 70.0%
CTGGGCCCATACCACGCACG+TGG - Chr3:82939883-82939902 None:intergenic 70.0%
GCCGAGGGAGGAAGCCATGG+TGG - Chr3:82940097-82940116 None:intergenic 70.0%
GTCGCCGAGGGAGGAAGCCA+TGG - Chr3:82940100-82940119 None:intergenic 70.0%
! GGGGTGCCACGTGCGTGGTA+TGG + Chr3:82939874-82939893 MsG0380016399.01.T01:intron 70.0%
! GTGCCGGCCAATCGCGGAAG+AGG - Chr3:82940266-82940285 None:intergenic 70.0%
! TTCCGCGATTGGCCGGCACC+CGG + Chr3:82940267-82940286 MsG0380016399.01.T01:CDS 70.0%
TCGTCGTCGACGCCGGGTGC+CGG - Chr3:82940282-82940301 None:intergenic 75.0%
!!! CGCCGGGTGCCGGCCAATCG+CGG - Chr3:82940272-82940291 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82936431 82940538 82936431 ID=MsG0380016399.01;Name=MsG0380016399.01
Chr3 mRNA 82936431 82940538 82936431 ID=MsG0380016399.01.T01;Parent=MsG0380016399.01;Name=MsG0380016399.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.33|0.25|1|0.66|0.5|4|0|204
Chr3 exon 82936431 82936643 82936431 ID=MsG0380016399.01.T01:exon:10963;Parent=MsG0380016399.01.T01
Chr3 exon 82937136 82937312 82937136 ID=MsG0380016399.01.T01:exon:10964;Parent=MsG0380016399.01.T01
Chr3 exon 82940222 82940326 82940222 ID=MsG0380016399.01.T01:exon:10965;Parent=MsG0380016399.01.T01
Chr3 exon 82940419 82940538 82940419 ID=MsG0380016399.01.T01:exon:10966;Parent=MsG0380016399.01.T01
Chr3 CDS 82936431 82936643 82936431 ID=MsG0380016399.01.T01:cds;Parent=MsG0380016399.01.T01
Chr3 CDS 82937136 82937312 82937136 ID=MsG0380016399.01.T01:cds;Parent=MsG0380016399.01.T01
Chr3 CDS 82940222 82940326 82940222 ID=MsG0380016399.01.T01:cds;Parent=MsG0380016399.01.T01
Chr3 CDS 82940419 82940538 82940419 ID=MsG0380016399.01.T01:cds;Parent=MsG0380016399.01.T01
Gene Sequence

>MsG0380016399.01.T01

ATGACCAGGGAATATGGAGGACAGTGGTTGAGCTGTGCTACGCGACATGTGAGGATCTATGCAGCTTATATTGATCCAGAAACTAGTGCTTTTGATCAAACTCAGATGGATAAACTCACCCTTATTCTTGATCCTACTGATGAGTTTGTGTGGAATCCTGATACTTGCAACTTGGTCTATTCTTACTTTCAGGAGCTTGTGGATCACTATGAGGGTGCTCCATTGAATGAATACACACTTCGGTTGATTGGTTCAGACATAGAGCATTATATAAGAAAGTTGTTATATGATGGAGTAATCAAGTATAATATGAATGCAAGGGTTCTGAATTTCAGCATGGGGAAGCCAGGATCATGTTCAACAACAATGATATCCAACCTGAAGATGCTACAAGAGTTGGTGAAGATACTATTGAAAAATGGCCAAGACCACCTCTTCCGCGATTGGCCGGCACCCGGCGTCGACGACGACGAGAAGAAAGCCTTCTTCGATCAGCTTGTTCTACTTGATTCCAGCTACCCTGGTGGTTTGGAATCATATATCAATAACGCCAAACGACTCTTGGCTGATTCCAAAGCTGGAAATAACCCTTTTGATGGCTTCACCCTTCCGTAA

Protein sequence

>MsG0380016399.01.T01

MTREYGGQWLSCATRHVRIYAAYIDPETSAFDQTQMDKLTLILDPTDEFVWNPDTCNLVYSYFQELVDHYEGAPLNEYTLRLIGSDIEHYIRKLLYDGVIKYNMNARVLNFSMGKPGSCSTTMISNLKMLQELVKILLKNGQDHLFRDWPAPGVDDDEKKAFFDQLVLLDSSYPGGLESYINNAKRLLADSKAGNNPFDGFTLP*