Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430600 | XP_003618426.1 | 81.111 | 180 | 11 | 2 | 8 | 175 | 155 | 323 | 2.71e-95 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430600 | G7KK05 | 81.111 | 180 | 11 | 2 | 8 | 175 | 155 | 323 | 1.30e-95 | 289 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1430600 | 0.857296 | 1.797812e-62 | -8.615850e-47 |
| Msa0008850 | Msa1430600 | 0.835883 | 1.294409e-56 | -8.615850e-47 |
| Msa0017120 | Msa1430600 | 0.836275 | 1.029767e-56 | -8.615850e-47 |
| Msa0020630 | Msa1430600 | 0.807431 | 5.073020e-50 | -8.615850e-47 |
| Msa0027540 | Msa1430600 | 0.851397 | 9.117730e-61 | -8.615850e-47 |
| Msa0065390 | Msa1430600 | 0.834806 | 2.422814e-56 | -8.615850e-47 |
| Msa0068410 | Msa1430600 | 0.802866 | 4.578588e-49 | -8.615850e-47 |
| Msa0075310 | Msa1430600 | 0.846359 | 2.282007e-59 | -8.615850e-47 |
| Msa0078090 | Msa1430600 | 0.815463 | 9.128296e-52 | -8.615850e-47 |
| Msa0084680 | Msa1430600 | 0.852777 | 3.694156e-61 | -8.615850e-47 |
| Msa0089210 | Msa1430600 | 0.820589 | 6.334280e-53 | -8.615850e-47 |
| Msa0090800 | Msa1430600 | 0.821863 | 3.219670e-53 | -8.615850e-47 |
| Msa0092660 | Msa1430600 | 0.802191 | 6.306438e-49 | -8.615850e-47 |
| Msa0094420 | Msa1430600 | 0.816404 | 5.626834e-52 | -8.615850e-47 |
| Msa0102900 | Msa1430600 | 0.803780 | 2.960745e-49 | -8.615850e-47 |
| Msa0110710 | Msa1430600 | 0.832627 | 8.484399e-56 | -8.615850e-47 |
| Msa1352290 | Msa1430600 | 0.838609 | 2.597494e-57 | -8.615850e-47 |
| Msa1354040 | Msa1430600 | 0.835937 | 1.254775e-56 | -8.615850e-47 |
| Msa1381130 | Msa1430600 | 0.842426 | 2.605583e-58 | -8.615850e-47 |
| Msa1400700 | Msa1430600 | -0.803562 | 3.286298e-49 | -8.615850e-47 |
| Msa1405770 | Msa1430600 | 0.813099 | 3.038073e-51 | -8.615850e-47 |
| Msa1406230 | Msa1430600 | 0.805695 | 1.178857e-49 | -8.615850e-47 |
| Msa1418200 | Msa1430600 | 0.830094 | 3.563172e-55 | -8.615850e-47 |
| Msa1428420 | Msa1430600 | 0.826127 | 3.216496e-54 | -8.615850e-47 |
| Msa1430600 | Msa1431000 | 0.805580 | 1.246470e-49 | -8.615850e-47 |
| Msa1430600 | Msa1449600 | 0.803692 | 3.088466e-49 | -8.615850e-47 |
| Msa1430600 | Msa1449880 | 0.837938 | 3.868362e-57 | -8.615850e-47 |
| Msa1430600 | Msa1458330 | 0.802562 | 5.288954e-49 | -8.615850e-47 |
| Msa1430600 | Msa1458920 | 0.829788 | 4.232289e-55 | -8.615850e-47 |
| Msa1430600 | Msa1464560 | 0.804207 | 2.413619e-49 | -8.615850e-47 |
| Msa0605620 | Msa1430600 | 0.811739 | 6.023167e-51 | -8.615850e-47 |
| Msa0607280 | Msa1430600 | 0.801541 | 8.577505e-49 | -8.615850e-47 |
| Msa0610860 | Msa1430600 | 0.806755 | 7.049931e-50 | -8.615850e-47 |
| Msa0614230 | Msa1430600 | 0.842851 | 2.008220e-58 | -8.615850e-47 |
| Msa0619330 | Msa1430600 | 0.814133 | 1.799275e-51 | -8.615850e-47 |
| Msa0638710 | Msa1430600 | 0.826585 | 2.502331e-54 | -8.615850e-47 |
| Msa0640880 | Msa1430600 | 0.821921 | 3.122315e-53 | -8.615850e-47 |
| Msa0642650 | Msa1430600 | 0.845214 | 4.668621e-59 | -8.615850e-47 |
| Msa0667220 | Msa1430600 | 0.840005 | 1.128034e-57 | -8.615850e-47 |
| Msa0667970 | Msa1430600 | 0.802751 | 4.835346e-49 | -8.615850e-47 |
| Msa0669220 | Msa1430600 | 0.828586 | 8.277596e-55 | -8.615850e-47 |
| Msa0681890 | Msa1430600 | 0.844572 | 6.959423e-59 | -8.615850e-47 |
| Msa0682400 | Msa1430600 | 0.803411 | 3.531379e-49 | -8.615850e-47 |
| Msa0685540 | Msa1430600 | 0.806781 | 6.961992e-50 | -8.615850e-47 |
| Msa0686610 | Msa1430600 | 0.804911 | 1.721243e-49 | -8.615850e-47 |
| Msa0702070 | Msa1430600 | 0.822534 | 2.250424e-53 | -8.615850e-47 |
| Msa0702120 | Msa1430600 | 0.800904 | 1.157863e-48 | -8.615850e-47 |
| Msa0703720 | Msa1430600 | 0.825759 | 3.933281e-54 | -8.615850e-47 |
| Msa0703760 | Msa1430600 | 0.805035 | 1.621171e-49 | -8.615850e-47 |
| Msa0707780 | Msa1430600 | 0.814697 | 1.349837e-51 | -8.615850e-47 |
| Msa0709480 | Msa1430600 | 0.801217 | 9.992313e-49 | -8.615850e-47 |
| Msa0730180 | Msa1430600 | 0.803468 | 3.435634e-49 | -8.615850e-47 |
| Msa0772210 | Msa1430600 | 0.805569 | 1.252807e-49 | -8.615850e-47 |
| Msa0783270 | Msa1430600 | 0.804438 | 2.160135e-49 | -8.615850e-47 |
| Msa0790830 | Msa1430600 | 0.805274 | 1.444884e-49 | -8.615850e-47 |
| Msa0820670 | Msa1430600 | 0.814017 | 1.908389e-51 | -8.615850e-47 |
| Msa0123170 | Msa1430600 | 0.817809 | 2.720225e-52 | -8.615850e-47 |
| Msa0130800 | Msa1430600 | 0.808127 | 3.608444e-50 | -8.615850e-47 |
| Msa0132180 | Msa1430600 | 0.801757 | 7.743156e-49 | -8.615850e-47 |
| Msa0135980 | Msa1430600 | 0.821072 | 4.904172e-53 | -8.615850e-47 |
| Msa0141830 | Msa1430600 | 0.821868 | 3.211020e-53 | -8.615850e-47 |
| Msa0145950 | Msa1430600 | 0.800494 | 1.403806e-48 | -8.615850e-47 |
| Msa0146470 | Msa1430600 | 0.852020 | 6.068742e-61 | -8.615850e-47 |
| Msa0159750 | Msa1430600 | 0.808841 | 2.539743e-50 | -8.615850e-47 |
| Msa0168100 | Msa1430600 | 0.825791 | 3.865303e-54 | -8.615850e-47 |
| Msa0182930 | Msa1430600 | 0.812711 | 3.695661e-51 | -8.615850e-47 |
| Msa0185390 | Msa1430600 | 0.840896 | 6.596442e-58 | -8.615850e-47 |
| Msa0194570 | Msa1430600 | 0.826784 | 2.242724e-54 | -8.615850e-47 |
| Msa0207000 | Msa1430600 | 0.818170 | 2.254237e-52 | -8.615850e-47 |
| Msa0222070 | Msa1430600 | 0.828300 | 9.708189e-55 | -8.615850e-47 |
| Msa0222120 | Msa1430600 | 0.830531 | 2.787276e-55 | -8.615850e-47 |
| Msa0223280 | Msa1430600 | 0.833737 | 4.491120e-56 | -8.615850e-47 |
| Msa0223390 | Msa1430600 | 0.801020 | 1.096287e-48 | -8.615850e-47 |
| Msa0225010 | Msa1430600 | 0.807954 | 3.927046e-50 | -8.615850e-47 |
| Msa0227490 | Msa1430600 | 0.824310 | 8.649451e-54 | -8.615850e-47 |
| Msa1224670 | Msa1430600 | 0.802845 | 4.624788e-49 | -8.615850e-47 |
| Msa1235890 | Msa1430600 | 0.821564 | 3.775040e-53 | -8.615850e-47 |
| Msa1263030 | Msa1430600 | 0.815836 | 7.539478e-52 | -8.615850e-47 |
| Msa1263590 | Msa1430600 | 0.815162 | 1.064647e-51 | -8.615850e-47 |
| Msa1263670 | Msa1430600 | 0.817920 | 2.567911e-52 | -8.615850e-47 |
| Msa1265960 | Msa1430600 | 0.806596 | 7.617932e-50 | -8.615850e-47 |
| Msa1284030 | Msa1430600 | 0.805076 | 1.589294e-49 | -8.615850e-47 |
| Msa1299160 | Msa1430600 | 0.824392 | 8.275301e-54 | -8.615850e-47 |
| Msa1315980 | Msa1430600 | 0.810168 | 1.317813e-50 | -8.615850e-47 |
| Msa1317030 | Msa1430600 | 0.809723 | 1.643289e-50 | -8.615850e-47 |
| Msa1323060 | Msa1430600 | 0.816072 | 6.676907e-52 | -8.615850e-47 |
| Msa1341930 | Msa1430600 | 0.812597 | 3.912951e-51 | -8.615850e-47 |
| Msa0367370 | Msa1430600 | 0.805714 | 1.168443e-49 | -8.615850e-47 |
| Msa0376510 | Msa1430600 | 0.812801 | 3.530817e-51 | -8.615850e-47 |
| Msa0380060 | Msa1430600 | 0.803707 | 3.065612e-49 | -8.615850e-47 |
| Msa0382500 | Msa1430600 | 0.831097 | 2.024291e-55 | -8.615850e-47 |
| Msa0417630 | Msa1430600 | 0.821284 | 4.381020e-53 | -8.615850e-47 |
| Msa0421800 | Msa1430600 | 0.833144 | 6.312635e-56 | -8.615850e-47 |
| Msa0425050 | Msa1430600 | 0.820191 | 7.815248e-53 | -8.615850e-47 |
| Msa0432680 | Msa1430600 | 0.823814 | 1.130998e-53 | -8.615850e-47 |
| Msa0448080 | Msa1430600 | 0.800093 | 1.694283e-48 | -8.615850e-47 |
| Msa0467800 | Msa1430600 | 0.812491 | 4.128811e-51 | -8.615850e-47 |
| Msa0467880 | Msa1430600 | 0.807807 | 4.220933e-50 | -8.615850e-47 |
| Msa0990520 | Msa1430600 | 0.849194 | 3.782261e-60 | -8.615850e-47 |
| Msa0992590 | Msa1430600 | 0.830253 | 3.259644e-55 | -8.615850e-47 |
| Msa1001780 | Msa1430600 | 0.824740 | 6.853074e-54 | -8.615850e-47 |
| Msa1002040 | Msa1430600 | 0.840551 | 8.124631e-58 | -8.615850e-47 |
| Msa1004500 | Msa1430600 | 0.808909 | 2.457038e-50 | -8.615850e-47 |
| Msa1022310 | Msa1430600 | 0.814702 | 1.346450e-51 | -8.615850e-47 |
| Msa1027790 | Msa1430600 | 0.804570 | 2.027200e-49 | -8.615850e-47 |
| Msa1037060 | Msa1430600 | -0.828787 | 7.403544e-55 | -8.615850e-47 |
| Msa1038320 | Msa1430600 | 0.844154 | 9.013440e-59 | -8.615850e-47 |
| Msa1061180 | Msa1430600 | 0.807595 | 4.681890e-50 | -8.615850e-47 |
| Msa1106560 | Msa1430600 | 0.804882 | 1.744975e-49 | -8.615850e-47 |
| Msa0257130 | Msa1430600 | 0.814726 | 1.330508e-51 | -8.615850e-47 |
| Msa0259980 | Msa1430600 | 0.834790 | 2.444931e-56 | -8.615850e-47 |
| Msa0261250 | Msa1430600 | -0.816787 | 4.618983e-52 | -8.615850e-47 |
| Msa0263620 | Msa1430600 | 0.828927 | 6.848908e-55 | -8.615850e-47 |
| Msa0284780 | Msa1430600 | 0.824497 | 7.819372e-54 | -8.615850e-47 |
| Msa0288240 | Msa1430600 | 0.819452 | 1.152963e-52 | -8.615850e-47 |
| Msa0298970 | Msa1430600 | 0.824707 | 6.974512e-54 | -8.615850e-47 |
| Msa0301180 | Msa1430600 | 0.843654 | 1.226829e-58 | -8.615850e-47 |
| Msa0314790 | Msa1430600 | 0.828760 | 7.514541e-55 | -8.615850e-47 |
| Msa0317260 | Msa1430600 | 0.820115 | 8.132133e-53 | -8.615850e-47 |
| Msa0320540 | Msa1430600 | 0.827171 | 1.812552e-54 | -8.615850e-47 |
| Msa0339860 | Msa1430600 | 0.842219 | 2.955811e-58 | -8.615850e-47 |
| Msa0344070 | Msa1430600 | 0.810893 | 9.189300e-51 | -8.615850e-47 |
| Msa1112610 | Msa1430600 | 0.808639 | 2.805833e-50 | -8.615850e-47 |
| Msa1118150 | Msa1430600 | 0.811143 | 8.113283e-51 | -8.615850e-47 |
| Msa1125780 | Msa1430600 | 0.809030 | 2.313880e-50 | -8.615850e-47 |
| Msa1125950 | Msa1430600 | 0.811394 | 7.157399e-51 | -8.615850e-47 |
| Msa1157730 | Msa1430600 | 0.805923 | 1.055677e-49 | -8.615850e-47 |
| Msa1159100 | Msa1430600 | 0.816934 | 4.281930e-52 | -8.615850e-47 |
| Msa1164800 | Msa1430600 | -0.829192 | 5.906366e-55 | -8.615850e-47 |
| Msa1166180 | Msa1430600 | 0.806201 | 9.226828e-50 | -8.615850e-47 |
| Msa1166280 | Msa1430600 | 0.802676 | 5.011239e-49 | -8.615850e-47 |
| Msa1171340 | Msa1430600 | 0.825353 | 4.908439e-54 | -8.615850e-47 |
| Msa1177240 | Msa1430600 | 0.832463 | 9.320728e-56 | -8.615850e-47 |
| Msa1210640 | Msa1430600 | 0.816119 | 6.515950e-52 | -8.615850e-47 |
| Msa1210770 | Msa1430600 | 0.817289 | 3.562190e-52 | -8.615850e-47 |
| Msa1219250 | Msa1430600 | 0.822995 | 1.757401e-53 | -8.615850e-47 |
| Msa1220450 | Msa1430600 | -0.814485 | 1.503958e-51 | -8.615850e-47 |
| Msa1220460 | Msa1430600 | -0.810098 | 1.364755e-50 | -8.615850e-47 |
| Msa1220480 | Msa1430600 | -0.809186 | 2.143358e-50 | -8.615850e-47 |
| Msa1223840 | Msa1430600 | 0.807462 | 4.996516e-50 | -8.615850e-47 |
| Msa0485280 | Msa1430600 | 0.825752 | 3.948798e-54 | -8.615850e-47 |
| Msa0514260 | Msa1430600 | 0.833764 | 4.422454e-56 | -8.615850e-47 |
| Msa0519200 | Msa1430600 | 0.820281 | 7.450194e-53 | -8.615850e-47 |
| Msa0524090 | Msa1430600 | 0.834061 | 3.725229e-56 | -8.615850e-47 |
| Msa0524120 | Msa1430600 | 0.841843 | 3.715408e-58 | -8.615850e-47 |
| Msa0535450 | Msa1430600 | 0.828999 | 6.578391e-55 | -8.615850e-47 |
| Msa0538570 | Msa1430600 | 0.810143 | 1.334372e-50 | -8.615850e-47 |
| Msa0546380 | Msa1430600 | 0.803959 | 2.717296e-49 | -8.615850e-47 |
| Msa0546740 | Msa1430600 | 0.833580 | 4.914573e-56 | -8.615850e-47 |
| Msa0561510 | Msa1430600 | 0.804735 | 1.872940e-49 | -8.615850e-47 |
| Msa0567290 | Msa1430600 | 0.805571 | 1.251655e-49 | -8.615850e-47 |
| Msa0574170 | Msa1430600 | 0.821276 | 4.400484e-53 | -8.615850e-47 |
| Msa0576420 | Msa1430600 | 0.835339 | 1.777886e-56 | -8.615850e-47 |
| Msa0578900 | Msa1430600 | 0.814355 | 1.607310e-51 | -8.615850e-47 |
| Msa0583740 | Msa1430600 | 0.812667 | 3.777411e-51 | -8.615850e-47 |
| Msa0600390 | Msa1430600 | 0.808195 | 3.488833e-50 | -8.615850e-47 |
| Msa0844530 | Msa1430600 | 0.804066 | 2.581690e-49 | -8.615850e-47 |
| Msa0877420 | Msa1430600 | 0.828987 | 6.621666e-55 | -8.615850e-47 |
| Msa0890250 | Msa1430600 | 0.819148 | 1.352234e-52 | -8.615850e-47 |
| Msa0903330 | Msa1430600 | 0.807487 | 4.934259e-50 | -8.615850e-47 |
| Msa0907700 | Msa1430600 | 0.826991 | 2.001731e-54 | -8.615850e-47 |
| Msa0925160 | Msa1430600 | 0.832980 | 6.936321e-56 | -8.615850e-47 |
| Msa0930330 | Msa1430600 | 0.827994 | 1.150092e-54 | -8.615850e-47 |
| Msa0931480 | Msa1430600 | 0.813731 | 2.206194e-51 | -8.615850e-47 |
| Msa0955260 | Msa1430600 | 0.818936 | 1.511206e-52 | -8.615850e-47 |
| Msa0958020 | Msa1430600 | 0.822207 | 2.680573e-53 | -8.615850e-47 |
| Msa0965960 | Msa1430600 | 0.807090 | 5.990973e-50 | -8.615850e-47 |
| Msa0971860 | Msa1430600 | 0.803964 | 2.711010e-49 | -8.615850e-47 |
| Msa0979550 | Msa1430600 | 0.812875 | 3.401533e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430600 | MtrunA17_Chr6g0452241 | 81.111 | 180 | 11 | 2 | 8 | 175 | 155 | 323 | 2.50e-99 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430600 | AT3G28460.3 | 67.045 | 176 | 35 | 2 | 8 | 171 | 105 | 269 | 6.33e-79 | 236 |
| Msa1430600 | AT3G28460.1 | 67.045 | 176 | 35 | 2 | 8 | 171 | 150 | 314 | 2.00e-78 | 236 |
| Msa1430600 | AT3G28460.2 | 63.235 | 136 | 27 | 2 | 8 | 131 | 150 | 274 | 5.08e-52 | 169 |
Find 53 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGACACTCTTGGCAATTTA+TGG | 0.126823 | tig0026702:-61571 | Msa1430600:CDS |
| ATTGCAGAATCACCCTTTCT+TGG | 0.229947 | tig0026702:-62457 | Msa1430600:CDS |
| CTCGAAACTGGCCAGTTTGC+TGG | 0.304645 | tig0026702:-61299 | Msa1430600:three_prime_UTR |
| GAACGTGCTGAGCAATTTGT+AGG | 0.324735 | tig0026702:-63361 | Msa1430600:CDS |
| TGTTCCAGTAGTAAGGGTTC+TGG | 0.346634 | tig0026702:+63289 | Msa1430600:intergenic |
| AATCCGGTCACCTCTAAGTT+TGG | 0.367798 | tig0026702:+63430 | Msa1430600:intergenic |
| ACCCTTACTACTGGAACAAA+AGG | 0.378675 | tig0026702:-63284 | Msa1430600:CDS |
| GCATAGTCAACTTCGGCATA+TGG | 0.424658 | tig0026702:+62496 | Msa1430600:intergenic |
| AAAAGTGTCTTCTCCAAGAA+AGG | 0.432850 | tig0026702:+62444 | Msa1430600:intergenic |
| CTAGTCAATGGTTTCAATAC+AGG | 0.433169 | tig0026702:+61241 | Msa1430600:intergenic |
| CAGTCGGTCCAACTCGAAAC+TGG | 0.436487 | tig0026702:-61311 | Msa1430600:three_prime_UTR |
| CATAAATTGCCAAGAGTGTC+CGG | 0.439452 | tig0026702:+61572 | Msa1430600:intergenic |
| CAGATAACCGACAGGCGGTT+TGG | 0.440998 | tig0026702:-61595 | Msa1430600:CDS |
| GATCAAACCAACCAGCAAAC+TGG | 0.451982 | tig0026702:+61288 | Msa1430600:intergenic |
| AGGACTGCCACCAGCCGCCT+TGG | 0.470348 | tig0026702:+63865 | Msa1430600:intergenic |
| TAACCGACAGGCGGTTTGGC+CGG | 0.473328 | tig0026702:-61591 | Msa1430600:CDS |
| GACTGAATCATCAATGAATC+CGG | 0.478832 | tig0026702:+63414 | Msa1430600:intergenic |
| TGCTTCAATTCCAACAGAAC+CGG | 0.478995 | tig0026702:+63799 | Msa1430600:intergenic |
| TCCTTCGAAAACCGACATGC+TGG | 0.483247 | tig0026702:-62325 | Msa1430600:CDS |
| GCGGTTTGGCCGGACACTCT+TGG | 0.486241 | tig0026702:-61581 | Msa1430600:CDS |
| AAAATGTTACATGAGTTAGT+AGG | 0.489474 | tig0026702:-61460 | Msa1430600:three_prime_UTR |
| CGTCCAAACTTAGAGGTGAC+CGG | 0.490270 | tig0026702:-63433 | Msa1430600:CDS |
| GCATAGAATCAACTAGTCAA+TGG | 0.494768 | tig0026702:+61229 | Msa1430600:intergenic |
| CAGTCCAGAACCCTTACTAC+TGG | 0.500679 | tig0026702:-63293 | Msa1430600:CDS |
| ATCTGAGTTATATTGCAGCT+TGG | 0.504479 | tig0026702:-61268 | Msa1430600:three_prime_UTR |
| CGCTGGTTAGACTTGTATAG+TGG | 0.526456 | tig0026702:-63824 | Msa1430600:CDS |
| CGTCCAGGTCTCAAGGATGC+AGG | 0.535253 | tig0026702:+63845 | Msa1430600:intergenic |
| TTAGACTTGTATAGTGGTAC+CGG | 0.539201 | tig0026702:-63818 | Msa1430600:CDS |
| AAAGTGTCTTCTCCAAGAAA+GGG | 0.539647 | tig0026702:+62445 | Msa1430600:intergenic |
| GGCAATTTATGGACCAACAT+GGG | 0.542760 | tig0026702:-61560 | Msa1430600:CDS |
| AAACTGGCCAGTTTGCTGGT+TGG | 0.544348 | tig0026702:-61295 | Msa1430600:three_prime_UTR |
| CAAACTGGCCAGTTTCGAGT+TGG | 0.557880 | tig0026702:+61303 | Msa1430600:intergenic |
| TAACCAGCGTCCAGGTCTCA+AGG | 0.567725 | tig0026702:+63838 | Msa1430600:intergenic |
| TACAAGTCTAACCAGCGTCC+AGG | 0.573471 | tig0026702:+63830 | Msa1430600:intergenic |
| TTGGACCGACTGACTCAGTC+CGG | 0.587108 | tig0026702:+61322 | Msa1430600:intergenic |
| CCCTTACTACTGGAACAAAA+GGG | 0.587543 | tig0026702:-63283 | Msa1430600:intron |
| TGCTTGGATTTACCTTAACA+AGG | 0.595874 | tig0026702:+62289 | Msa1430600:intergenic |
| TTGACTATGCGGTGTTGATG+AGG | 0.601118 | tig0026702:-62483 | Msa1430600:CDS |
| TGGCAATTTATGGACCAACA+TGG | 0.601397 | tig0026702:-61561 | Msa1430600:CDS |
| TATAATGCCAAGGCGGCTGG+TGG | 0.610188 | tig0026702:-63872 | Msa1430600:CDS |
| ACCGACATGCTGGAATCTTG+CGG | 0.612335 | tig0026702:-62315 | Msa1430600:CDS |
| AGTCCTGCATCCTTGAGACC+TGG | 0.614215 | tig0026702:-63848 | Msa1430600:CDS |
| TGTTTACATGCAGGAAACAG+TGG | 0.621057 | tig0026702:-62547 | Msa1430600:intron |
| CATCCTTGAGACCTGGACGC+TGG | 0.621329 | tig0026702:-63841 | Msa1430600:CDS |
| TCCGCAAGATTCCAGCATGT+CGG | 0.622536 | tig0026702:+62314 | Msa1430600:intergenic |
| CAACACCGCATAGTCAACTT+CGG | 0.627785 | tig0026702:+62489 | Msa1430600:intergenic |
| TTGAACCTCAGATAACCGAC+AGG | 0.630946 | tig0026702:-61603 | Msa1430600:intron |
| TGTCCGGCCAAACCGCCTGT+CGG | 0.644355 | tig0026702:+61588 | Msa1430600:intergenic |
| TAGTCAACTTCGGCATATGG+AGG | 0.648003 | tig0026702:+62499 | Msa1430600:intergenic |
| AACCTCAGATAACCGACAGG+CGG | 0.678379 | tig0026702:-61600 | Msa1430600:intron |
| AAAACATCTGATACAACCCA+TGG | 0.699216 | tig0026702:+63457 | Msa1430600:intergenic |
| ATATGCCGAAGTTGACTATG+CGG | 0.710556 | tig0026702:-62494 | Msa1430600:CDS |
| GTTCGAAGAATTTCTCAACG+CGG | 0.768031 | tig0026702:+63380 | Msa1430590:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCATAAATGATTTTAAATTT+GGG | + | tig0026702:61890-61909 | Msa1430600:intergenic | 15.0% |
| !! | AACAAATGAATTATTAGAAA+AGG | - | tig0026702:62145-62164 | Msa1430600:intron | 15.0% |
| !! | AATAAAAACTGTATCAAATA+CGG | + | tig0026702:62346-62365 | Msa1430600:intergenic | 15.0% |
| !! | ATGTAGTAATTTCTTATTAT+TGG | - | tig0026702:62692-62711 | Msa1430600:intron | 15.0% |
| !! | AAAAATTTAATAAAACTCGA+TGG | + | tig0026702:63408-63427 | Msa1430600:intergenic | 15.0% |
| !! | AAAGTATATTAAATTCGTAA+TGG | + | tig0026702:63441-63460 | Msa1430600:intergenic | 15.0% |
| !! | GAAAAAAATGCATTGTAAAT+GGG | + | tig0026702:61562-61581 | Msa1430600:intergenic | 20.0% |
| !! | AGAAAAAAATGCATTGTAAA+TGG | + | tig0026702:61563-61582 | Msa1430600:intergenic | 20.0% |
| !!! | TTAACAAAAGCAAACATTTT+AGG | - | tig0026702:61608-61627 | Msa1430600:intron | 20.0% |
| !! | ATGTGTAAAATGAAGTTAAA+AGG | + | tig0026702:61787-61806 | Msa1430600:intergenic | 20.0% |
| !!! | CCCAAATTTAAAATCATTTA+TGG | - | tig0026702:61887-61906 | Msa1430600:intron | 20.0% |
| !!! | GCCATAAATGATTTTAAATT+TGG | + | tig0026702:61891-61910 | Msa1430600:intergenic | 20.0% |
| !!! | TGATTGAGATGTATTTTATA+TGG | - | tig0026702:62414-62433 | Msa1430600:intron | 20.0% |
| !!! | AATCTCATGATTTTTTATCT+AGG | - | tig0026702:62750-62769 | Msa1430600:intron | 20.0% |
| !!! | GATTTTGTTTTATAATGCCA+AGG | - | tig0026702:61226-61245 | Msa1430600:three_prime_UTR | 25.0% |
| ! | CATAATTAAACTCATATGTG+TGG | + | tig0026702:61468-61487 | Msa1430600:intergenic | 25.0% |
| !!! | CAATGCATTTTTTTCTTTTG+TGG | - | tig0026702:61567-61586 | Msa1430600:CDS | 25.0% |
| !! | AAATGATTTTAAATTTGGGC+TGG | + | tig0026702:61886-61905 | Msa1430600:intergenic | 25.0% |
| ! | TGAATTATTAGAAAAGGTTC+CGG | - | tig0026702:62151-62170 | Msa1430600:intron | 25.0% |
| ! | GAAATGCAATAAATATTCCA+AGG | - | tig0026702:62223-62242 | Msa1430600:intron | 25.0% |
| ! | AATGTTTGTGGATACATTAT+AGG | + | tig0026702:62294-62313 | Msa1430600:intergenic | 25.0% |
| ! | AGATGTCAAAAAAATGTTTG+TGG | + | tig0026702:62306-62325 | Msa1430600:intergenic | 25.0% |
| !! | TATCAGTTTTCTAATGTATC+TGG | - | tig0026702:62471-62490 | Msa1430600:CDS | 25.0% |
| ! | AATTTGAATTGTTTACATGC+AGG | - | tig0026702:62552-62571 | Msa1430600:intron | 25.0% |
| !!! | TATTGGTCTAAATAGTGTTT+TGG | - | tig0026702:62709-62728 | Msa1430600:intron | 25.0% |
| ! | ATTTAATAAAACTCGATGGT+TGG | + | tig0026702:63404-63423 | Msa1430600:intergenic | 25.0% |
| ! | TTAAATTCGTAATGGTAAGT+CGG | + | tig0026702:63433-63452 | Msa1430600:intergenic | 25.0% |
| !!! | TTCACTTCAATTGTGTTTTT+TGG | + | tig0026702:63599-63618 | Msa1430600:intergenic | 25.0% |
| ! | AAAATGTTACATGAGTTAGT+AGG | - | tig0026702:63648-63667 | Msa1430600:intron | 25.0% |
| !!! | TTTGTTTTATAATGCCAAGG+CGG | - | tig0026702:61229-61248 | Msa1430600:three_prime_UTR | 30.0% |
| CATTGAAAACATCAATACCT+CGG | + | tig0026702:61351-61370 | Msa1430600:intergenic | 30.0% | |
| !! | GTATTGATGTTTTCAATGAG+CGG | - | tig0026702:61353-61372 | Msa1430600:three_prime_UTR | 30.0% |
| !! | GAAATTCATAAAAGTGCTTC+CGG | + | tig0026702:62173-62192 | Msa1430600:intergenic | 30.0% |
| GCTATTAAGAATTTCGTTCA+AGG | - | tig0026702:62201-62220 | Msa1430600:intron | 30.0% | |
| ! | ATCCTTTTCTTTTGACGATA+CGG | + | tig0026702:62497-62516 | Msa1430600:intergenic | 30.0% |
| GGATGGTAAGAAAATTATGA+AGG | - | tig0026702:62513-62532 | Msa1430600:CDS | 30.0% | |
| ! | GCAAAACATGCAAAATTTTG+TGG | - | tig0026702:62868-62887 | Msa1430600:intron | 30.0% |
| CAGATATTACTTGACATATG+TGG | + | tig0026702:62906-62925 | Msa1430600:intergenic | 30.0% | |
| CAAGTAATATCTGTAGTCAA+TGG | - | tig0026702:62913-62932 | Msa1430600:intron | 30.0% | |
| TCCAAAAATATAACCCTAAG+CGG | + | tig0026702:63096-63115 | Msa1430600:intergenic | 30.0% | |
| AAACGGTTCAAAAAGACTAA+AGG | + | tig0026702:63119-63138 | Msa1430600:intergenic | 30.0% | |
| !! | TTAGTCTTTTTGAACCGTTT+AGG | - | tig0026702:63119-63138 | Msa1430600:intron | 30.0% |
| ! | TAGTCTTTTTGAACCGTTTA+GGG | - | tig0026702:63120-63139 | Msa1430600:intron | 30.0% |
| CATTTACAGAATTCAAACCT+GGG | + | tig0026702:63479-63498 | Msa1430600:intergenic | 30.0% | |
| ACATTTACAGAATTCAAACC+TGG | + | tig0026702:63480-63499 | Msa1430600:intergenic | 30.0% | |
| !!! | AGTCTGATATTTTTTGCTGT+TGG | - | tig0026702:63618-63637 | Msa1430600:intron | 30.0% |
| TGTGTCCTATGTTTAAAAAC+CGG | - | tig0026702:63767-63786 | Msa1430600:intron | 30.0% | |
| TTAGACTTGTATAGTGGTAC+CGG | - | tig0026702:61290-61309 | Msa1430600:three_prime_UTR | 35.0% | |
| !! | CGTGACTTTAGAATCAGTTA+CGG | + | tig0026702:61426-61445 | Msa1430600:intergenic | 35.0% |
| ! | TTAGGTGCATTTTGTTGAGA+TGG | - | tig0026702:61626-61645 | Msa1430600:intron | 35.0% |
| ! | ATTTTGTTGAGATGGATCCA+TGG | - | tig0026702:61634-61653 | Msa1430600:intron | 35.0% |
| ! | TTTTGTTGAGATGGATCCAT+GGG | - | tig0026702:61635-61654 | Msa1430600:intron | 35.0% |
| AAAACATCTGATACAACCCA+TGG | + | tig0026702:61654-61673 | Msa1430600:intergenic | 35.0% | |
| GACTGAATCATCAATGAATC+CGG | + | tig0026702:61697-61716 | Msa1430600:intergenic | 35.0% | |
| !! | TTAAATTTGGGCTGGTAAAG+AGG | + | tig0026702:61878-61897 | Msa1430600:intergenic | 35.0% |
| !! | ATAGTGGTTTGTTCGAATTG+CGG | - | tig0026702:61946-61965 | Msa1430600:intron | 35.0% |
| AACTGTATCAAATACGGTGT+TGG | + | tig0026702:62340-62359 | Msa1430600:intergenic | 35.0% | |
| !!! | GTAAGTGTCAGTTTTATTCG+AGG | + | tig0026702:62393-62412 | Msa1430600:intergenic | 35.0% |
| GTATCGTCAAAAGAAAAGGA+TGG | - | tig0026702:62496-62515 | Msa1430600:CDS | 35.0% | |
| ! | AAAGTGTCTTCTCCAAGAAA+GGG | + | tig0026702:62666-62685 | Msa1430600:intergenic | 35.0% |
| !! | AAAAGTGTCTTCTCCAAGAA+AGG | + | tig0026702:62667-62686 | Msa1430600:intergenic | 35.0% |
| TGCTTGGATTTACCTTAACA+AGG | + | tig0026702:62822-62841 | Msa1430600:intergenic | 35.0% | |
| ! | ACACAGTACTATTGATTGCT+TGG | + | tig0026702:62838-62857 | Msa1430600:intergenic | 35.0% |
| !!! | TCCATTGATTTTATCCGCTT+AGG | - | tig0026702:63079-63098 | Msa1430600:intron | 35.0% |
| !!! | CCATTGATTTTATCCGCTTA+GGG | - | tig0026702:63080-63099 | Msa1430600:intron | 35.0% |
| ! | TCCGCTTAGGGTTATATTTT+TGG | - | tig0026702:63092-63111 | Msa1430600:intron | 35.0% |
| TGGAAGTCAAAAACCCTAAA+CGG | + | tig0026702:63136-63155 | Msa1430600:intergenic | 35.0% | |
| CAGATGAGAAAAAGTAACGT+CGG | + | tig0026702:63231-63250 | Msa1430600:intergenic | 35.0% | |
| AGCGAGATTCAGAAGAAATT+AGG | + | tig0026702:63266-63285 | Msa1430600:intergenic | 35.0% | |
| ! | TTAGTTTGATGATATGTCCC+AGG | - | tig0026702:63459-63478 | Msa1430600:CDS | 35.0% |
| ! | TCAGTCCGGTTTTTAAACAT+AGG | + | tig0026702:63775-63794 | Msa1430600:intergenic | 35.0% |
| ATCTGAGTTATATTGCAGCT+TGG | - | tig0026702:63840-63859 | Msa1430600:CDS | 35.0% | |
| CTAGTCAATGGTTTCAATAC+AGG | + | tig0026702:63870-63889 | Msa1430600:intergenic | 35.0% | |
| GCATAGAATCAACTAGTCAA+TGG | + | tig0026702:63882-63901 | Msa1430600:intergenic | 35.0% | |
| TGCTTCAATTCCAACAGAAC+CGG | + | tig0026702:61312-61331 | Msa1430600:intergenic | 40.0% | |
| ! | TGTTTTGCGTCCAAACTTAG+AGG | - | tig0026702:61668-61687 | Msa1430600:intron | 40.0% |
| GTTCGAAGAATTTCTCAACG+CGG | + | tig0026702:61731-61750 | Msa1430600:intergenic | 40.0% | |
| ACCCTTACTACTGGAACAAA+AGG | - | tig0026702:61824-61843 | Msa1430600:intron | 40.0% | |
| ! | CCCTTTTGTTCCAGTAGTAA+GGG | + | tig0026702:61828-61847 | Msa1430600:intergenic | 40.0% |
| CCCTTACTACTGGAACAAAA+GGG | - | tig0026702:61825-61844 | Msa1430600:intron | 40.0% | |
| ! | ACCCTTTTGTTCCAGTAGTA+AGG | + | tig0026702:61829-61848 | Msa1430600:intergenic | 40.0% |
| GTGTTGTAATCGCGATATCA+TGG | - | tig0026702:61920-61939 | Msa1430600:intron | 40.0% | |
| CGCGATATCATGGAAAATAG+TGG | - | tig0026702:61930-61949 | Msa1430600:intron | 40.0% | |
| !! | TAGTGGTTTGTTCGAATTGC+GGG | - | tig0026702:61947-61966 | Msa1430600:intron | 40.0% |
| TTATAGGCTATAGCGTAGCA+GGG | + | tig0026702:62061-62080 | Msa1430600:intergenic | 40.0% | |
| CAGTGCTATAACGCTGTTAT+AGG | + | tig0026702:62077-62096 | Msa1430600:intergenic | 40.0% | |
| ATAACAGCGTTATAGCACTG+TGG | - | tig0026702:62077-62096 | Msa1430600:intron | 40.0% | |
| CAAGCAGTGTTGTCAAATAG+AGG | + | tig0026702:62110-62129 | Msa1430600:intergenic | 40.0% | |
| ATATTTGCAAGAGACTCAGG+CGG | + | tig0026702:62251-62270 | Msa1430600:intergenic | 40.0% | |
| TGCATATTTGCAAGAGACTC+AGG | + | tig0026702:62254-62273 | Msa1430600:intergenic | 40.0% | |
| ! | TCAAATACGGTGTTGGATGA+TGG | + | tig0026702:62333-62352 | Msa1430600:intergenic | 40.0% |
| TGTTTACATGCAGGAAACAG+TGG | - | tig0026702:62561-62580 | Msa1430600:intron | 40.0% | |
| ATATGCCGAAGTTGACTATG+CGG | - | tig0026702:62614-62633 | Msa1430600:intron | 40.0% | |
| ATTGCAGAATCACCCTTTCT+TGG | - | tig0026702:62651-62670 | Msa1430600:intron | 40.0% | |
| AGTAGTGGTTGCTCCAATTA+CGG | - | tig0026702:62937-62956 | Msa1430600:intron | 40.0% | |
| CCCTAAGCGGATAAAATCAA+TGG | + | tig0026702:63083-63102 | Msa1430600:intergenic | 40.0% | |
| AACTCCTACGTCAAAGTCTA+GGG | + | tig0026702:63299-63318 | Msa1430600:intergenic | 40.0% | |
| AAACTCCTACGTCAAAGTCT+AGG | + | tig0026702:63300-63319 | Msa1430600:intergenic | 40.0% | |
| !! | CATAAATTGCCAAGAGTGTC+CGG | + | tig0026702:63539-63558 | Msa1430600:intergenic | 40.0% |
| TGGCAATTTATGGACCAACA+TGG | - | tig0026702:63547-63566 | Msa1430600:intron | 40.0% | |
| GGCAATTTATGGACCAACAT+GGG | - | tig0026702:63548-63567 | Msa1430600:intron | 40.0% | |
| ! | TTTTATAATGCCAAGGCGGC+TGG | - | tig0026702:61233-61252 | Msa1430600:three_prime_UTR | 45.0% |
| ! | CGCTGGTTAGACTTGTATAG+TGG | - | tig0026702:61284-61303 | Msa1430600:three_prime_UTR | 45.0% |
| !! | TATAGTGGTACCGGTTCTGT+TGG | - | tig0026702:61299-61318 | Msa1430600:three_prime_UTR | 45.0% |
| AATCCGGTCACCTCTAAGTT+TGG | + | tig0026702:61681-61700 | Msa1430600:intergenic | 45.0% | |
| GAACGTGCTGAGCAATTTGT+AGG | - | tig0026702:61747-61766 | Msa1430600:intron | 45.0% | |
| TGTTCCAGTAGTAAGGGTTC+TGG | + | tig0026702:61822-61841 | Msa1430600:intergenic | 45.0% | |
| CTACTGGAACAAAAGGGTTG+TGG | - | tig0026702:61831-61850 | Msa1430600:intron | 45.0% | |
| GTTATAGGCTATAGCGTAGC+AGG | + | tig0026702:62062-62081 | Msa1430600:intergenic | 45.0% | |
| GGCCGTATCGTCAAAAGAAA+AGG | - | tig0026702:62492-62511 | Msa1430600:CDS | 45.0% | |
| TAGTCAACTTCGGCATATGG+AGG | + | tig0026702:62612-62631 | Msa1430600:intergenic | 45.0% | |
| GCATAGTCAACTTCGGCATA+TGG | + | tig0026702:62615-62634 | Msa1430600:intergenic | 45.0% | |
| CAACACCGCATAGTCAACTT+CGG | + | tig0026702:62622-62641 | Msa1430600:intergenic | 45.0% | |
| !! | TTGACTATGCGGTGTTGATG+AGG | - | tig0026702:62625-62644 | Msa1430600:intron | 45.0% |
| TCTGTAGTCAATGGCAGTAG+TGG | - | tig0026702:62922-62941 | Msa1430600:intron | 45.0% | |
| TGCTCATGGTGGCAAAATCT+CGG | - | tig0026702:63036-63055 | Msa1430600:intron | 45.0% | |
| CACGAAACAGAACTAAGGAG+AGG | + | tig0026702:63162-63181 | Msa1430600:intergenic | 45.0% | |
| GAGGTCACGAAACAGAACTA+AGG | + | tig0026702:63167-63186 | Msa1430600:intergenic | 45.0% | |
| AAAGTAACGTCGGAGTAGCA+CGG | + | tig0026702:63221-63240 | Msa1430600:intergenic | 45.0% | |
| !! | TTGGTGCTATAGAGGTGTAG+CGG | + | tig0026702:63327-63346 | Msa1430600:intergenic | 45.0% |
| ACACCTCTATAGCACCAACA+TGG | - | tig0026702:63329-63348 | Msa1430600:intron | 45.0% | |
| !! | TGACCATGTTGGTGCTATAG+AGG | + | tig0026702:63335-63354 | Msa1430600:intergenic | 45.0% |
| AGTGTAGCTGATGACCATGT+TGG | + | tig0026702:63346-63365 | Msa1430600:intergenic | 45.0% | |
| TTGAACCTCAGATAACCGAC+AGG | - | tig0026702:63505-63524 | Msa1430600:intron | 45.0% | |
| CGGACACTCTTGGCAATTTA+TGG | - | tig0026702:63537-63556 | Msa1430600:intron | 45.0% | |
| ! | CTCTTCTTTTGAGCCCATGT+TGG | + | tig0026702:63564-63583 | Msa1430600:intergenic | 45.0% |
| AAAAACCGGACTGAGTCAGT+CGG | - | tig0026702:63781-63800 | Msa1430600:intron | 45.0% | |
| GATCAAACCAACCAGCAAAC+TGG | + | tig0026702:63823-63842 | Msa1430600:intergenic | 45.0% | |
| TACAAGTCTAACCAGCGTCC+AGG | + | tig0026702:61281-61300 | Msa1430600:intergenic | 50.0% | |
| ! | GGAATTGAAGCACTTAGCCG+AGG | - | tig0026702:61320-61339 | Msa1430600:three_prime_UTR | 50.0% |
| ! | TCAATACCTCGGAGCATCCT+CGG | + | tig0026702:61340-61359 | Msa1430600:intergenic | 50.0% |
| CGTCCAAACTTAGAGGTGAC+CGG | - | tig0026702:61675-61694 | Msa1430600:intron | 50.0% | |
| CAGTCCAGAACCCTTACTAC+TGG | - | tig0026702:61815-61834 | Msa1430600:intron | 50.0% | |
| !! | CTATAGAAGCACCACAGCAC+TGG | + | tig0026702:61976-61995 | Msa1430600:intergenic | 50.0% |
| ACAGCGTTATAGCACTGTGG+CGG | - | tig0026702:62080-62099 | Msa1430600:intron | 50.0% | |
| TCCTTCGAAAACCGACATGC+TGG | - | tig0026702:62783-62802 | Msa1430600:intron | 50.0% | |
| !!! | TCCAGCATGTCGGTTTTCGA+AGG | + | tig0026702:62787-62806 | Msa1430600:intergenic | 50.0% |
| ACCGACATGCTGGAATCTTG+CGG | - | tig0026702:62793-62812 | Msa1430600:intron | 50.0% | |
| TCCGCAAGATTCCAGCATGT+CGG | + | tig0026702:62797-62816 | Msa1430600:intergenic | 50.0% | |
| ! | ATCTTGCGGACGCCTTGTTA+AGG | - | tig0026702:62807-62826 | Msa1430600:intron | 50.0% |
| AACACAGATCTGCTCTGCCA+CGG | + | tig0026702:63003-63022 | Msa1430600:intergenic | 50.0% | |
| AGATCTGTGTTGCGGTCGTA+GGG | - | tig0026702:63012-63031 | Msa1430600:intron | 50.0% | |
| GCTCATGGTGGCAAAATCTC+GGG | - | tig0026702:63037-63056 | Msa1430600:intron | 50.0% | |
| ACAGAACTAAGGAGAGGTCG+TGG | + | tig0026702:63156-63175 | Msa1430600:intergenic | 50.0% | |
| GCAAAGTCACAGTCTAGCAG+TGG | + | tig0026702:63196-63215 | Msa1430600:intergenic | 50.0% | |
| CTCTCCCTAGACTTTGACGT+AGG | - | tig0026702:63292-63311 | Msa1430600:CDS | 50.0% | |
| AACCTCAGATAACCGACAGG+CGG | - | tig0026702:63508-63527 | Msa1430600:intron | 50.0% | |
| ! | CAAACTGGCCAGTTTCGAGT+TGG | + | tig0026702:63808-63827 | Msa1430600:intergenic | 50.0% |
| !! | AAACTGGCCAGTTTGCTGGT+TGG | - | tig0026702:63813-63832 | Msa1430600:intron | 50.0% |
| TATAATGCCAAGGCGGCTGG+TGG | - | tig0026702:61236-61255 | Msa1430600:three_prime_UTR | 55.0% | |
| AGTCCTGCATCCTTGAGACC+TGG | - | tig0026702:61260-61279 | Msa1430600:three_prime_UTR | 55.0% | |
| TAACCAGCGTCCAGGTCTCA+AGG | + | tig0026702:61273-61292 | Msa1430600:intergenic | 55.0% | |
| AAGAGACTCAGGCGGAACCT+TGG | + | tig0026702:62243-62262 | Msa1430600:intergenic | 55.0% | |
| TTGCCACGCACAGCCGTAAT+TGG | + | tig0026702:62953-62972 | Msa1430600:intergenic | 55.0% | |
| TACGGCTGTGCGTGGCAAAA+CGG | - | tig0026702:62955-62974 | Msa1430600:intron | 55.0% | |
| GGCAGAGCAGATCTGTGTTG+CGG | - | tig0026702:63004-63023 | Msa1430600:intron | 55.0% | |
| CAGATCTGTGTTGCGGTCGT+AGG | - | tig0026702:63011-63030 | Msa1430600:intron | 55.0% | |
| AGTCTAGCAGTGGAGAGCAG+AGG | + | tig0026702:63186-63205 | Msa1430600:intergenic | 55.0% | |
| ! | AACCGCCTGTCGGTTATCTG+AGG | + | tig0026702:63513-63532 | Msa1430600:intergenic | 55.0% |
| CAGATAACCGACAGGCGGTT+TGG | - | tig0026702:63513-63532 | Msa1430600:intron | 55.0% | |
| ! | TTGGACCGACTGACTCAGTC+CGG | + | tig0026702:63789-63808 | Msa1430600:intergenic | 55.0% |
| CAGTCGGTCCAACTCGAAAC+TGG | - | tig0026702:63797-63816 | Msa1430600:intron | 55.0% | |
| CTCGAAACTGGCCAGTTTGC+TGG | - | tig0026702:63809-63828 | Msa1430600:intron | 55.0% | |
| CGTCCAGGTCTCAAGGATGC+AGG | + | tig0026702:61266-61285 | Msa1430600:intergenic | 60.0% | |
| CATCCTTGAGACCTGGACGC+TGG | - | tig0026702:61267-61286 | Msa1430600:three_prime_UTR | 60.0% | |
| ACTTAGCCGAGGATGCTCCG+AGG | - | tig0026702:61331-61350 | Msa1430600:three_prime_UTR | 60.0% | |
| ATTGCGGGATGCCAGTGCTG+TGG | - | tig0026702:61962-61981 | Msa1430600:intron | 60.0% | |
| GCTCCAATTACGGCTGTGCG+TGG | - | tig0026702:62947-62966 | Msa1430600:intron | 60.0% | |
| AGACGCTACACATAGCGCCG+TGG | - | tig0026702:62983-63002 | Msa1430600:intron | 60.0% | |
| ! | TAACCGACAGGCGGTTTGGC+CGG | - | tig0026702:63517-63536 | Msa1430600:intron | 60.0% |
| GGCTGTGCGTGGCAAAACGG+AGG | - | tig0026702:62958-62977 | Msa1430600:intron | 65.0% | |
| TGCGGTCGTAGGGCTGCTCA+TGG | - | tig0026702:63022-63041 | Msa1430600:intron | 65.0% | |
| GGTCGTAGGGCTGCTCATGG+TGG | - | tig0026702:63025-63044 | Msa1430600:intron | 65.0% | |
| TGTCCGGCCAAACCGCCTGT+CGG | + | tig0026702:63523-63542 | Msa1430600:intergenic | 65.0% | |
| ! | GCGGTTTGGCCGGACACTCT+TGG | - | tig0026702:63527-63546 | Msa1430600:intron | 65.0% |
| AGGACTGCCACCAGCCGCCT+TGG | + | tig0026702:61246-61265 | Msa1430600:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026702 | gene | 61224 | 63906 | 61224 | ID=Msa1430600;Name=Msa1430600 |
| tig0026702 | mRNA | 61224 | 63906 | 61224 | ID=Msa1430600-mRNA-1;Parent=Msa1430600;Name=Msa1430600-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.4|0.5|1|0.4|0.5|6|289|179 |
| tig0026702 | exon | 61224 | 61614 | 61224 | ID=Msa1430600-mRNA-1:exon:7084;Parent=Msa1430600-mRNA-1 |
| tig0026702 | exon | 62302 | 62358 | 62302 | ID=Msa1430600-mRNA-1:exon:7083;Parent=Msa1430600-mRNA-1 |
| tig0026702 | exon | 62441 | 62556 | 62441 | ID=Msa1430600-mRNA-1:exon:7082;Parent=Msa1430600-mRNA-1 |
| tig0026702 | exon | 63284 | 63312 | 63284 | ID=Msa1430600-mRNA-1:exon:7081;Parent=Msa1430600-mRNA-1 |
| tig0026702 | exon | 63358 | 63500 | 63358 | ID=Msa1430600-mRNA-1:exon:7080;Parent=Msa1430600-mRNA-1 |
| tig0026702 | exon | 63814 | 63906 | 63814 | ID=Msa1430600-mRNA-1:exon:7079;Parent=Msa1430600-mRNA-1 |
| tig0026702 | CDS | 63814 | 63906 | 63814 | ID=Msa1430600-mRNA-1:cds;Parent=Msa1430600-mRNA-1 |
| tig0026702 | CDS | 63358 | 63500 | 63358 | ID=Msa1430600-mRNA-1:cds;Parent=Msa1430600-mRNA-1 |
| tig0026702 | CDS | 63284 | 63312 | 63284 | ID=Msa1430600-mRNA-1:cds;Parent=Msa1430600-mRNA-1 |
| tig0026702 | CDS | 62441 | 62556 | 62441 | ID=Msa1430600-mRNA-1:cds;Parent=Msa1430600-mRNA-1 |
| tig0026702 | CDS | 62302 | 62358 | 62302 | ID=Msa1430600-mRNA-1:cds;Parent=Msa1430600-mRNA-1 |
| tig0026702 | CDS | 61513 | 61614 | 61513 | ID=Msa1430600-mRNA-1:cds;Parent=Msa1430600-mRNA-1 |
| tig0026702 | three_prime_UTR | 61224 | 61512 | 61224 | ID=Msa1430600-mRNA-1:three_prime_utr;Parent=Msa1430600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
