AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061617


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061617.t1 MTR_5g025270 97.251 582 14 2 1 581 1 581 0.0 1159
MS.gene061617.t1 MTR_5g025230 82.818 582 95 4 1 581 1 578 0.0 989
MS.gene061617.t1 MTR_5g025250 81.787 582 102 3 1 581 1 579 0.0 974
MS.gene061617.t1 MTR_2g070460 36.644 584 333 15 24 577 32 608 2.37e-123 377
MS.gene061617.t1 MTR_8g037315 38.911 514 284 9 84 577 33 536 5.32e-114 350
MS.gene061617.t1 MTR_8g037275 37.475 499 283 9 100 577 81 571 1.26e-106 332
MS.gene061617.t1 MTR_8g037290 37.275 499 284 9 100 577 81 571 2.74e-105 328
MS.gene061617.t1 MTR_8g037310 36.628 516 298 10 83 577 64 571 6.59e-105 328
MS.gene061617.t1 MTR_3g110195 28.772 570 329 20 49 570 38 578 4.30e-56 199
MS.gene061617.t1 MTR_3g109610 26.316 494 291 23 121 570 98 562 3.77e-23 103
MS.gene061617.t1 MTR_7g063800 25.761 493 295 22 121 570 98 562 9.82e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061617.t1 AT4G19170 68.571 560 148 6 29 578 54 595 0.0 796
MS.gene061617.t1 AT3G63520 40.077 519 281 8 83 580 28 537 2.68e-123 374
MS.gene061617.t1 AT1G30100 41.020 490 277 9 92 575 102 585 2.06e-121 371
MS.gene061617.t1 AT4G18350 36.684 567 325 10 29 576 29 580 4.86e-117 359
MS.gene061617.t1 AT3G14440 40.121 496 282 10 92 580 112 599 9.65e-117 359
MS.gene061617.t1 AT1G78390 38.664 494 283 11 96 581 176 657 1.03e-112 350
MS.gene061617.t1 AT3G24220 35.000 580 335 14 33 577 2 574 8.72e-103 322
MS.gene061617.t1 AT2G44990 24.868 567 301 28 112 572 75 622 2.27e-11 67.0
MS.gene061617.t1 AT2G44990 24.868 567 301 28 112 572 71 618 2.72e-11 67.0

Find 143 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCTCTTGACATGATTTC+TGG 0.188747 1.2:+27569877 MS.gene061617:CDS
GTTATGGGTGGTGGTGGTGG+TGG 0.196963 1.2:-27569005 None:intergenic
ATTTGCATCAAAACGGAAAT+AGG 0.215073 1.2:-27569743 None:intergenic
ACACAATGTGAAATCATTAA+AGG 0.269615 1.2:+27569187 MS.gene061617:CDS
TTTGATGGATGAGATGTTAA+AGG 0.272209 1.2:-27568897 None:intergenic
GTGAAGATTAATATCAAAAC+TGG 0.276508 1.2:+27570138 MS.gene061617:CDS
CTTGTTATTATGATGGGTTT+TGG 0.286339 1.2:-27568845 None:intergenic
AATCCAATGCCAAAGATTTC+AGG 0.293364 1.2:+27570264 MS.gene061617:CDS
CTAGATTTCGGGGTGATAAA+TGG 0.295975 1.2:+27570195 MS.gene061617:CDS
CAGTGCGAAACCTAGATTTC+GGG 0.305625 1.2:+27570184 MS.gene061617:CDS
TCTAGGTTTCGCACTGATAA+TGG 0.306548 1.2:-27570177 None:intergenic
AATCTTGACGGCCGATTGTT+TGG 0.307017 1.2:-27569618 None:intergenic
TGTCTGGGATTGTGATGTTT+GGG 0.310552 1.2:-27568933 None:intergenic
AGAAGAGGATGATGGTTATT+TGG 0.316567 1.2:+27570392 MS.gene061617:CDS
TTCACCACTCCTGAAATCTT+TGG 0.336330 1.2:-27570273 None:intergenic
TTGCTTGCTTGTTATTATGA+TGG 0.337359 1.2:-27568852 None:intergenic
TACAATCCTTCTAACGGAAT+TGG 0.339439 1.2:+27569496 MS.gene061617:CDS
CATTTATCACCCCGAAATCT+AGG 0.339483 1.2:-27570194 None:intergenic
ACCGCAGCACGTGTCATATC+TGG 0.342484 1.2:+27569469 MS.gene061617:CDS
GCTAAACCAATTCCGTTAGA+AGG 0.348673 1.2:-27569502 None:intergenic
GAGGTTATGGGTGGTGGTGG+TGG 0.353426 1.2:-27569008 None:intergenic
AACACAAGTTTGGCTTTGTT+TGG 0.358095 1.2:+27569526 MS.gene061617:CDS
GTGTCTGGGATTGTGATGTT+TGG 0.362352 1.2:-27568934 None:intergenic
TCAGTGCGAAACCTAGATTT+CGG 0.374050 1.2:+27570183 MS.gene061617:CDS
TTGTATGGAGAGGGTTGTTA+TGG 0.374199 1.2:+27570333 MS.gene061617:CDS
AGGTTTGTTTATGCGGCAAT+TGG 0.386277 1.2:+27570240 MS.gene061617:CDS
TTTGAGGTTATGGGTGGTGG+TGG 0.388850 1.2:-27569011 None:intergenic
TGGTTTAGCCAACACAAGTT+TGG 0.393154 1.2:+27569516 MS.gene061617:CDS
TGTTAAACATAACGATGTTC+CGG 0.404869 1.2:+27569768 MS.gene061617:CDS
TTGAAACCAGAAAACACGTT+TGG 0.405859 1.2:-27569412 None:intergenic
TTGATGGATGAGATGTTAAA+GGG 0.406557 1.2:-27568896 None:intergenic
GGTGTAAGCTTGATTTCATA+AGG 0.411021 1.2:-27569583 None:intergenic
TGCTTGCTTGTTATTATGAT+GGG 0.432912 1.2:-27568851 None:intergenic
GGGAGTGATGATGGTGTTTG+TGG 0.434132 1.2:-27569037 None:intergenic
ACTCCTGAAATCTTTGGCAT+TGG 0.436531 1.2:-27570267 None:intergenic
CGTGGAAGAAACTGTGGGTT+TGG 0.439102 1.2:-27569253 None:intergenic
ACACTTCCACCGTCACTTAA+CGG 0.447215 1.2:+27569211 MS.gene061617:CDS
CCTAAAATTGACGGCGACAC+TGG 0.451020 1.2:+27569676 MS.gene061617:CDS
AAACCATACGGCACCCTCCT+TGG 0.455270 1.2:-27570510 None:intergenic
TGAAACCAGAAAACACGTTT+GGG 0.456713 1.2:-27569411 None:intergenic
ATTTCTGGTGGTTCTCCAGT+AGG 0.459625 1.2:+27569892 MS.gene061617:CDS
AACGGCGCTTACATAAGAAA+TGG 0.460728 1.2:+27569229 MS.gene061617:CDS
CCGATCCATCAAAAGTTTCA+AGG 0.463927 1.2:+27569917 MS.gene061617:CDS
TAACACCATTTGCATCAAAA+CGG 0.472715 1.2:-27569750 None:intergenic
CGCGATCAATGCGTGGGATG+GGG 0.473648 1.2:+27570017 MS.gene061617:CDS
ACGCGATCAATGCGTGGGAT+GGG 0.477959 1.2:+27570016 MS.gene061617:CDS
TATGGAGAGGGTTGTTATGG+TGG 0.479678 1.2:+27570336 MS.gene061617:CDS
TGCTCGATGGAGAGAACATT+CGG 0.481558 1.2:-27570072 None:intergenic
GTGACGAGTCGAAGATGAAA+TGG 0.483688 1.2:+27569965 MS.gene061617:CDS
GAAGTTGGATGTAGGTTGTA+TGG 0.483755 1.2:+27570318 MS.gene061617:CDS
TTATGTGCATGATGAGAAGA+AGG 0.484903 1.2:+27570419 MS.gene061617:CDS
GTTTGCCGTTAAAATCTTGA+CGG 0.485908 1.2:-27569630 None:intergenic
CACGCGATCAATGCGTGGGA+TGG 0.488713 1.2:+27570015 MS.gene061617:CDS
CCTCTTGACATGATTTCTGG+TGG 0.488783 1.2:+27569880 MS.gene061617:CDS
ATGAAATGGTTCGATGTGCC+AGG 0.489596 1.2:+27569979 MS.gene061617:CDS
GTCGCCGGAGTTTGAGATTG+TGG 0.494521 1.2:+27570473 MS.gene061617:CDS
ATTGTTTGGATATCACCGTT+TGG 0.495988 1.2:-27569604 None:intergenic
AACGGTGATATCCAAACAAT+CGG 0.496479 1.2:+27569607 MS.gene061617:CDS
AAGGGAGGGATAGAAGTTGT+TGG 0.498248 1.2:-27568878 None:intergenic
AAAACACGTTTGGGATAAGT+TGG 0.498794 1.2:-27569402 None:intergenic
TCCCTACGACACCGACAACT+TGG 0.500531 1.2:-27570565 None:intergenic
TTAATGATTTCACATTGTGT+TGG 0.501774 1.2:-27569184 None:intergenic
TTTGATGGATCGGAACCTAC+TGG 0.501938 1.2:-27569907 None:intergenic
TACAAAATCGAAAACGAAGC+TGG 0.505480 1.2:+27569376 MS.gene061617:CDS
AGTAATGCTGGGAGTGATGA+TGG 0.506662 1.2:-27569046 None:intergenic
AAAGAATAGGTTTGTTTATG+CGG 0.507283 1.2:+27570233 MS.gene061617:CDS
GGTCTTGTCATGGAGAAAAC+CGG 0.510037 1.2:-27569787 None:intergenic
GGTTTGTTTATGCGGCAATT+GGG 0.511453 1.2:+27570241 MS.gene061617:CDS
ACTGCTCATCCTAAAATTGA+CGG 0.512038 1.2:+27569667 MS.gene061617:CDS
ATGATTTCACATTGTGTTGG+AGG 0.513822 1.2:-27569181 None:intergenic
GGAGTTTGAGATTGTGGCGG+AGG 0.515266 1.2:+27570479 MS.gene061617:CDS
TGGATGAGATGTTAAAGGGA+GGG 0.519687 1.2:-27568892 None:intergenic
CACCAAGTTGTCGGTGTCGT+AGG 0.521647 1.2:+27570563 MS.gene061617:CDS
CACGCCATTACAATCTCAAA+CGG 0.522637 1.2:+27569313 MS.gene061617:CDS
GCGAAATCATGAAGAAAAGA+AGG 0.525570 1.2:-27569808 None:intergenic
GAGGGAGGATGGTGAAGAAG+AGG 0.527711 1.2:+27570377 MS.gene061617:CDS
ACCAAGTTGTCGGTGTCGTA+GGG 0.528287 1.2:+27570564 MS.gene061617:CDS
CCATCAAAAGTTTCAAGGAT+CGG 0.531863 1.2:+27569922 MS.gene061617:CDS
GGTGATGGATGCGAAGTCGC+CGG 0.538159 1.2:+27570458 MS.gene061617:CDS
TGATTTCACATTGTGTTGGA+GGG 0.543631 1.2:-27569180 None:intergenic
GTGTTGGAGGGAGTTCGTCT+AGG 0.545453 1.2:-27569168 None:intergenic
TCATGCACGCGATCAATGCG+TGG 0.547541 1.2:+27570010 MS.gene061617:CDS
GAAATCAAGCTTACACCAAA+CGG 0.548084 1.2:+27569589 MS.gene061617:CDS
GTGTTTACGGATATTCAGCT+TGG 0.550330 1.2:+27569850 MS.gene061617:CDS
ATTTGTAAGTTTGAACGTAA+CGG 0.551232 1.2:-27569354 None:intergenic
TATGACACGTGCTGCGGTGA+CGG 0.553634 1.2:-27569464 None:intergenic
GTGATAAATGGTGATTACAT+GGG 0.557337 1.2:+27570207 MS.gene061617:CDS
GTCTGGGATTGTGATGTTTG+GGG 0.559818 1.2:-27568932 None:intergenic
GGAGGGAGTTCGTCTAGGAC+TGG 0.561664 1.2:-27569163 None:intergenic
TAAGCTTGATTTCATAAGGA+AGG 0.561782 1.2:-27569579 None:intergenic
ATGGATGAGATGTTAAAGGG+AGG 0.562849 1.2:-27568893 None:intergenic
TACCACCTCTTCGACGGTGA+TGG 0.565615 1.2:+27569283 MS.gene061617:CDS
GGATGTAGGTTGTATGGAGA+GGG 0.565942 1.2:+27570324 MS.gene061617:CDS
ACATGTCTTGGATCTACAGA+TGG 0.569645 1.2:-27569121 None:intergenic
GGAGGGATAGAAGTTGTTGG+TGG 0.570969 1.2:-27568875 None:intergenic
TGCCATCACCGTCGAAGAGG+TGG 0.571502 1.2:-27569285 None:intergenic
GAGTGACATCACCAAGTTGT+CGG 0.571610 1.2:+27570554 MS.gene061617:CDS
TGGATGTAGGTTGTATGGAG+AGG 0.572621 1.2:+27570323 MS.gene061617:CDS
TCACCGTCGAAGAGGTGGTA+AGG 0.575068 1.2:-27569280 None:intergenic
GGTGATAAATGGTGATTACA+TGG 0.575102 1.2:+27570206 MS.gene061617:CDS
TCCGCCACAATCTCAAACTC+CGG 0.575111 1.2:-27570477 None:intergenic
CTTATAGCTTCTGCTGCACG+TGG 0.575305 1.2:+27569439 MS.gene061617:CDS
AGGATGAGCAGTCATACTCA+TGG 0.575328 1.2:-27569656 None:intergenic
AACGTAACGGCTACAGAGTG+TGG 0.575577 1.2:-27569341 None:intergenic
GCGTGCATGATATTAAATCC+TGG 0.576415 1.2:-27569997 None:intergenic
TATGTGCATGATGAGAAGAA+GGG 0.578787 1.2:+27570420 MS.gene061617:CDS
AAGAAAAGAAGGTCTTGTCA+TGG 0.578816 1.2:-27569797 None:intergenic
AAACAAAGCCAAACTTGTGT+TGG 0.580683 1.2:-27569524 None:intergenic
TCTCTCCATCGTATGCTCGA+TGG 0.582461 1.2:-27570085 None:intergenic
AATAATCCATGAAAACCATA+CGG 0.583712 1.2:-27570522 None:intergenic
ATGTAAGCGCCGTTAAGTGA+CGG 0.584811 1.2:-27569220 None:intergenic
AAGGTGAGGAAGTTGGATGT+AGG 0.586152 1.2:+27570310 MS.gene061617:CDS
AATGTGTTGAGTAGTAATGC+TGG 0.590033 1.2:-27569058 None:intergenic
CCACCAGAAATCATGTCAAG+AGG 0.590568 1.2:-27569880 None:intergenic
GATGGTGAAGAAGAGGATGA+TGG 0.592671 1.2:+27570384 MS.gene061617:CDS
CGGAGGTGAAGTTGCCAAGG+AGG 0.593842 1.2:+27570496 MS.gene061617:CDS
GTGGGATGGGGAAGATGATG+AGG 0.595645 1.2:+27570029 MS.gene061617:CDS
GGAGGTGAAGTTGCCAAGGA+GGG 0.600925 1.2:+27570497 MS.gene061617:CDS
GGACAATACAATCCTTCTAA+CGG 0.602074 1.2:+27569490 MS.gene061617:CDS
TTGCCAAGGAGGGTGCCGTA+TGG 0.604907 1.2:+27570507 MS.gene061617:CDS
ATGAGAAGAAGGGAGAGTCA+AGG 0.607088 1.2:+27570430 MS.gene061617:CDS
GTGTTGAAAGGTGAGGAAGT+TGG 0.610000 1.2:+27570303 MS.gene061617:CDS
TGGCGGAGGTGAAGTTGCCA+AGG 0.613374 1.2:+27570493 MS.gene061617:CDS
GTGAAGATAGATGTGTTGAA+AGG 0.624379 1.2:+27570291 MS.gene061617:CDS
GGTCCACGTGGAAGAAACTG+TGG 0.628559 1.2:-27569259 None:intergenic
GCATGCCATCACCGTCGAAG+AGG 0.632272 1.2:-27569288 None:intergenic
GATAGATGTGTTGAAAGGTG+AGG 0.636429 1.2:+27570296 MS.gene061617:CDS
CATGCACGCGATCAATGCGT+GGG 0.637360 1.2:+27570011 MS.gene061617:CDS
GGACCTTACCACCTCTTCGA+CGG 0.645380 1.2:+27569277 MS.gene061617:CDS
AATGCCAAAGATTTCAGGAG+TGG 0.648962 1.2:+27570269 MS.gene061617:CDS
AACCCACAGTTTCTTCCACG+TGG 0.651198 1.2:+27569256 MS.gene061617:CDS
GCCGGAGTTTGAGATTGTGG+CGG 0.652926 1.2:+27570476 MS.gene061617:CDS
TGATAAATGGTGATTACATG+GGG 0.658268 1.2:+27570208 MS.gene061617:CDS
TGAAGATTAATATCAAAACT+GGG 0.668404 1.2:+27570139 MS.gene061617:CDS
AGTGCGAAACCTAGATTTCG+GGG 0.669036 1.2:+27570185 MS.gene061617:CDS
TCTCTCCATCGAGCATACGA+TGG 0.671121 1.2:+27570080 MS.gene061617:CDS
TCCAGATATGACACGTGCTG+CGG 0.676934 1.2:-27569470 None:intergenic
ATGTGTTGAGTAGTAATGCT+GGG 0.681095 1.2:-27569057 None:intergenic
GTCCACGTGGAAGAAACTGT+GGG 0.688234 1.2:-27569258 None:intergenic
TAAGCGCCGTTAAGTGACGG+TGG 0.696353 1.2:-27569217 None:intergenic
ATGGTGGCATAGGACCGTAA+CGG 0.707951 1.2:-27569714 None:intergenic
GACTCGTCACTAGCATAACG+AGG 0.742544 1.2:-27569952 None:intergenic
AAGAGGTGGTAAGGTCCACG+TGG 0.744047 1.2:-27569271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGATTAATATCAAAACT+GGG + chr1.2:27570139-27570158 MS.gene061617:CDS 20.0%
! AAACGGAAATAGGTTAAAAA+TGG - chr1.2:27569736-27569755 None:intergenic 25.0%
! AATAATCCATGAAAACCATA+CGG - chr1.2:27570525-27570544 None:intergenic 25.0%
! ACACAATGTGAAATCATTAA+AGG + chr1.2:27569187-27569206 MS.gene061617:CDS 25.0%
! ATTTGTAAGTTTGAACGTAA+CGG - chr1.2:27569357-27569376 None:intergenic 25.0%
! GTGAAGATTAATATCAAAAC+TGG + chr1.2:27570138-27570157 MS.gene061617:CDS 25.0%
! TTAATGATTTCACATTGTGT+TGG - chr1.2:27569187-27569206 None:intergenic 25.0%
!! AAAGAATAGGTTTGTTTATG+CGG + chr1.2:27570233-27570252 MS.gene061617:CDS 25.0%
!! TAAAAAGTATGCTGTGTTTA+CGG + chr1.2:27569837-27569856 MS.gene061617:CDS 25.0%
!!! TTGTTATTATGATGGGTTTT+GGG - chr1.2:27568847-27568866 None:intergenic 25.0%
!!! TTTTCATGGATTATTTGTGA+AGG + chr1.2:27570530-27570549 MS.gene061617:CDS 25.0%
ATTACATGGGGAAAAAGAAT+AGG + chr1.2:27570220-27570239 MS.gene061617:CDS 30.0%
ATTTGCATCAAAACGGAAAT+AGG - chr1.2:27569746-27569765 None:intergenic 30.0%
GTGATAAATGGTGATTACAT+GGG + chr1.2:27570207-27570226 MS.gene061617:CDS 30.0%
TAACACCATTTGCATCAAAA+CGG - chr1.2:27569753-27569772 None:intergenic 30.0%
TAAGCTTGATTTCATAAGGA+AGG - chr1.2:27569582-27569601 None:intergenic 30.0%
TGATAAATGGTGATTACATG+GGG + chr1.2:27570208-27570227 MS.gene061617:CDS 30.0%
TGTTAAACATAACGATGTTC+CGG + chr1.2:27569768-27569787 MS.gene061617:CDS 30.0%
! GGTAACAAACTTTTTGCTTT+AGG + chr1.2:27569547-27569566 MS.gene061617:CDS 30.0%
! TTGATGGATGAGATGTTAAA+GGG - chr1.2:27568899-27568918 None:intergenic 30.0%
! TTTGATGGATGAGATGTTAA+AGG - chr1.2:27568900-27568919 None:intergenic 30.0%
!! CACAGCATACTTTTTAGTAA+TGG - chr1.2:27569833-27569852 None:intergenic 30.0%
!! TATTTCCGTTTTGATGCAAA+TGG + chr1.2:27569745-27569764 MS.gene061617:CDS 30.0%
!! TGCTTGCTTGTTATTATGAT+GGG - chr1.2:27568854-27568873 None:intergenic 30.0%
!! TTGCTTGCTTGTTATTATGA+TGG - chr1.2:27568855-27568874 None:intergenic 30.0%
!! TTTTCCGTTTGAGATTGTAA+TGG - chr1.2:27569320-27569339 None:intergenic 30.0%
!!! CTTGTTATTATGATGGGTTT+TGG - chr1.2:27568848-27568867 None:intergenic 30.0%
!!! TTGTGGTTTTTTGAGGTTAT+GGG - chr1.2:27569023-27569042 None:intergenic 30.0%
!!! TTTGTGGTTTTTTGAGGTTA+TGG - chr1.2:27569024-27569043 None:intergenic 30.0%
!!! TTTTGAGACAAAACATGTCT+TGG - chr1.2:27569136-27569155 None:intergenic 30.0%
AAACAAAGCCAAACTTGTGT+TGG - chr1.2:27569527-27569546 None:intergenic 35.0%
AACGGTGATATCCAAACAAT+CGG + chr1.2:27569607-27569626 MS.gene061617:CDS 35.0%
AATCCAATGCCAAAGATTTC+AGG + chr1.2:27570264-27570283 MS.gene061617:CDS 35.0%
AATCCTCTTGACATGATTTC+TGG + chr1.2:27569877-27569896 MS.gene061617:CDS 35.0%
AATGTGTTGAGTAGTAATGC+TGG - chr1.2:27569061-27569080 None:intergenic 35.0%
ACTGCTCATCCTAAAATTGA+CGG + chr1.2:27569667-27569686 MS.gene061617:CDS 35.0%
ATGATTTCACATTGTGTTGG+AGG - chr1.2:27569184-27569203 None:intergenic 35.0%
ATGTGTTGAGTAGTAATGCT+GGG - chr1.2:27569060-27569079 None:intergenic 35.0%
ATTGTTTGGATATCACCGTT+TGG - chr1.2:27569607-27569626 None:intergenic 35.0%
CCATCAAAAGTTTCAAGGAT+CGG + chr1.2:27569922-27569941 MS.gene061617:CDS 35.0%
CGGAAATAGGTTAAAAATGG+TGG - chr1.2:27569733-27569752 None:intergenic 35.0%
GAAATCAAGCTTACACCAAA+CGG + chr1.2:27569589-27569608 MS.gene061617:CDS 35.0%
GCGAAATCATGAAGAAAAGA+AGG - chr1.2:27569811-27569830 None:intergenic 35.0%
GGACAATACAATCCTTCTAA+CGG + chr1.2:27569490-27569509 MS.gene061617:CDS 35.0%
GGTGATAAATGGTGATTACA+TGG + chr1.2:27570206-27570225 MS.gene061617:CDS 35.0%
GGTGTAAGCTTGATTTCATA+AGG - chr1.2:27569586-27569605 None:intergenic 35.0%
GTGAAGATAGATGTGTTGAA+AGG + chr1.2:27570291-27570310 MS.gene061617:CDS 35.0%
GTTTGCCGTTAAAATCTTGA+CGG - chr1.2:27569633-27569652 None:intergenic 35.0%
TACAAAATCGAAAACGAAGC+TGG + chr1.2:27569376-27569395 MS.gene061617:CDS 35.0%
TACAATCCTTCTAACGGAAT+TGG + chr1.2:27569496-27569515 MS.gene061617:CDS 35.0%
TAGGTTAAAAATGGTGGCAT+AGG - chr1.2:27569727-27569746 None:intergenic 35.0%
TATGTGCATGATGAGAAGAA+GGG + chr1.2:27570420-27570439 MS.gene061617:CDS 35.0%
TGAAACCAGAAAACACGTTT+GGG - chr1.2:27569414-27569433 None:intergenic 35.0%
TGATTTCACATTGTGTTGGA+GGG - chr1.2:27569183-27569202 None:intergenic 35.0%
TTATGTGCATGATGAGAAGA+AGG + chr1.2:27570419-27570438 MS.gene061617:CDS 35.0%
TTGAAACCAGAAAACACGTT+TGG - chr1.2:27569415-27569434 None:intergenic 35.0%
! AAAACACGTTTGGGATAAGT+TGG - chr1.2:27569405-27569424 None:intergenic 35.0%
! AAGAAAAGAAGGTCTTGTCA+TGG - chr1.2:27569800-27569819 None:intergenic 35.0%
! AGAAGAGGATGATGGTTATT+TGG + chr1.2:27570392-27570411 MS.gene061617:CDS 35.0%
! GAAACTTTTGCTTTCCGTTA+CGG + chr1.2:27569700-27569719 MS.gene061617:CDS 35.0%
!! AACACAAGTTTGGCTTTGTT+TGG + chr1.2:27569526-27569545 MS.gene061617:CDS 35.0%
!! CCTTGAAACTTTTGATGGAT+CGG - chr1.2:27569920-27569939 None:intergenic 35.0%
!! TGATGTTTGGGGTTTTTCTT+TGG - chr1.2:27568924-27568943 None:intergenic 35.0%
!! TTTTATTGGTGGGTCTATGA+AGG - chr1.2:27569101-27569120 None:intergenic 35.0%
!!! ATGGTGTTTGTGGTTTTTTG+AGG - chr1.2:27569030-27569049 None:intergenic 35.0%
!!! CTACAGATGGTTTTATTGGT+GGG - chr1.2:27569111-27569130 None:intergenic 35.0%
!!! GGATCTACAGATGGTTTTAT+TGG - chr1.2:27569115-27569134 None:intergenic 35.0%
!!! GGGTTTTTCTTTGGTTTTGA+TGG - chr1.2:27568915-27568934 None:intergenic 35.0%
!!! TCTACAGATGGTTTTATTGG+TGG - chr1.2:27569112-27569131 None:intergenic 35.0%
AACGGCGCTTACATAAGAAA+TGG + chr1.2:27569229-27569248 MS.gene061617:CDS 40.0%
AATGCCAAAGATTTCAGGAG+TGG + chr1.2:27570269-27570288 MS.gene061617:CDS 40.0%
ACATGTCTTGGATCTACAGA+TGG - chr1.2:27569124-27569143 None:intergenic 40.0%
ACTCCTGAAATCTTTGGCAT+TGG - chr1.2:27570270-27570289 None:intergenic 40.0%
ATGGATGAGATGTTAAAGGG+AGG - chr1.2:27568896-27568915 None:intergenic 40.0%
CACGCCATTACAATCTCAAA+CGG + chr1.2:27569313-27569332 MS.gene061617:CDS 40.0%
CATTTATCACCCCGAAATCT+AGG - chr1.2:27570197-27570216 None:intergenic 40.0%
CCGATCCATCAAAAGTTTCA+AGG + chr1.2:27569917-27569936 MS.gene061617:CDS 40.0%
CTAGATTTCGGGGTGATAAA+TGG + chr1.2:27570195-27570214 MS.gene061617:CDS 40.0%
GAAGTTGGATGTAGGTTGTA+TGG + chr1.2:27570318-27570337 MS.gene061617:CDS 40.0%
GATAGATGTGTTGAAAGGTG+AGG + chr1.2:27570296-27570315 MS.gene061617:CDS 40.0%
GCGTGCATGATATTAAATCC+TGG - chr1.2:27570000-27570019 None:intergenic 40.0%
GCTAAACCAATTCCGTTAGA+AGG - chr1.2:27569505-27569524 None:intergenic 40.0%
GTGTTTACGGATATTCAGCT+TGG + chr1.2:27569850-27569869 MS.gene061617:CDS 40.0%
TCAGTGCGAAACCTAGATTT+CGG + chr1.2:27570183-27570202 MS.gene061617:CDS 40.0%
TGGATGAGATGTTAAAGGGA+GGG - chr1.2:27568895-27568914 None:intergenic 40.0%
TGGTTTAGCCAACACAAGTT+TGG + chr1.2:27569516-27569535 MS.gene061617:CDS 40.0%
TTCACCACTCCTGAAATCTT+TGG - chr1.2:27570276-27570295 None:intergenic 40.0%
TTGTATGGAGAGGGTTGTTA+TGG + chr1.2:27570333-27570352 MS.gene061617:CDS 40.0%
! AGGTTTGTTTATGCGGCAAT+TGG + chr1.2:27570240-27570259 MS.gene061617:CDS 40.0%
! ATCGGCCGTCAAGATTTTAA+CGG + chr1.2:27569625-27569644 MS.gene061617:CDS 40.0%
! CCGATCCTTGAAACTTTTGA+TGG - chr1.2:27569925-27569944 None:intergenic 40.0%
! CTTATCCCAAACGTGTTTTC+TGG + chr1.2:27569406-27569425 MS.gene061617:CDS 40.0%
! GGTGTAGGAAGAGTTTTTGT+GGG - chr1.2:27568983-27569002 None:intergenic 40.0%
! GGTTTGTTTATGCGGCAATT+GGG + chr1.2:27570241-27570260 MS.gene061617:CDS 40.0%
! GTGTAGGAAGAGTTTTTGTG+GGG - chr1.2:27568982-27569001 None:intergenic 40.0%
! TCTAGGTTTCGCACTGATAA+TGG - chr1.2:27570180-27570199 None:intergenic 40.0%
! TGTAGGAAGAGTTTTTGTGG+GGG - chr1.2:27568981-27569000 None:intergenic 40.0%
! TGTCTGGGATTGTGATGTTT+GGG - chr1.2:27568936-27568955 None:intergenic 40.0%
!!! AGAGTCAAGGTTTTTGGTGA+TGG + chr1.2:27570443-27570462 MS.gene061617:CDS 40.0%
!!! TGGTTTTTTGAGGTTATGGG+TGG - chr1.2:27569020-27569039 None:intergenic 40.0%
!!! TTTTTTGAGGTTATGGGTGG+TGG - chr1.2:27569017-27569036 None:intergenic 40.0%
AAGGGAGGGATAGAAGTTGT+TGG - chr1.2:27568881-27568900 None:intergenic 45.0%
AAGGTGAGGAAGTTGGATGT+AGG + chr1.2:27570310-27570329 MS.gene061617:CDS 45.0%
AATCTTGACGGCCGATTGTT+TGG - chr1.2:27569621-27569640 None:intergenic 45.0%
ACACTTCCACCGTCACTTAA+CGG + chr1.2:27569211-27569230 MS.gene061617:CDS 45.0%
AGGATGAGCAGTCATACTCA+TGG - chr1.2:27569659-27569678 None:intergenic 45.0%
AGTAATGCTGGGAGTGATGA+TGG - chr1.2:27569049-27569068 None:intergenic 45.0%
AGTGCGAAACCTAGATTTCG+GGG + chr1.2:27570185-27570204 MS.gene061617:CDS 45.0%
ATGAAATGGTTCGATGTGCC+AGG + chr1.2:27569979-27569998 MS.gene061617:CDS 45.0%
ATGAGAAGAAGGGAGAGTCA+AGG + chr1.2:27570430-27570449 MS.gene061617:CDS 45.0%
CAGTGCGAAACCTAGATTTC+GGG + chr1.2:27570184-27570203 MS.gene061617:CDS 45.0%
CCACCAGAAATCATGTCAAG+AGG - chr1.2:27569883-27569902 None:intergenic 45.0%
GAGTGACATCACCAAGTTGT+CGG + chr1.2:27570554-27570573 MS.gene061617:CDS 45.0%
GATGGTGAAGAAGAGGATGA+TGG + chr1.2:27570384-27570403 MS.gene061617:CDS 45.0%
GGATGTAGGTTGTATGGAGA+GGG + chr1.2:27570324-27570343 MS.gene061617:CDS 45.0%
GTGACGAGTCGAAGATGAAA+TGG + chr1.2:27569965-27569984 MS.gene061617:CDS 45.0%
GTGTTGAAAGGTGAGGAAGT+TGG + chr1.2:27570303-27570322 MS.gene061617:CDS 45.0%
TATGGAGAGGGTTGTTATGG+TGG + chr1.2:27570336-27570355 MS.gene061617:CDS 45.0%
TGCTCGATGGAGAGAACATT+CGG - chr1.2:27570075-27570094 None:intergenic 45.0%
TGGATGTAGGTTGTATGGAG+AGG + chr1.2:27570323-27570342 MS.gene061617:CDS 45.0%
! ATGTAAGCGCCGTTAAGTGA+CGG - chr1.2:27569223-27569242 None:intergenic 45.0%
! CCTCTTGACATGATTTCTGG+TGG + chr1.2:27569880-27569899 MS.gene061617:CDS 45.0%
! GAAGGGAGAGTCAAGGTTTT+TGG + chr1.2:27570437-27570456 MS.gene061617:CDS 45.0%
! GGGTGTAGGAAGAGTTTTTG+TGG - chr1.2:27568984-27569003 None:intergenic 45.0%
! GGTCTTGTCATGGAGAAAAC+CGG - chr1.2:27569790-27569809 None:intergenic 45.0%
! GTAGGAAGAGTTTTTGTGGG+GGG - chr1.2:27568980-27568999 None:intergenic 45.0%
! GTCTGGGATTGTGATGTTTG+GGG - chr1.2:27568935-27568954 None:intergenic 45.0%
! GTGTCTGGGATTGTGATGTT+TGG - chr1.2:27568937-27568956 None:intergenic 45.0%
! TTTGATGGATCGGAACCTAC+TGG - chr1.2:27569910-27569929 None:intergenic 45.0%
!! ATTTCTGGTGGTTCTCCAGT+AGG + chr1.2:27569892-27569911 MS.gene061617:CDS 45.0%
!!! GGTGGTGGTTTTTAGTGTCT+GGG - chr1.2:27568951-27568970 None:intergenic 45.0%
!!! TGGTGGTGGTTTTTAGTGTC+TGG - chr1.2:27568952-27568971 None:intergenic 45.0%
AACCCACAGTTTCTTCCACG+TGG + chr1.2:27569256-27569275 MS.gene061617:CDS 50.0%
AACGTAACGGCTACAGAGTG+TGG - chr1.2:27569344-27569363 None:intergenic 50.0%
ATGGTGGCATAGGACCGTAA+CGG - chr1.2:27569717-27569736 None:intergenic 50.0%
CCTAAAATTGACGGCGACAC+TGG + chr1.2:27569676-27569695 MS.gene061617:CDS 50.0%
CGTGGAAGAAACTGTGGGTT+TGG - chr1.2:27569256-27569275 None:intergenic 50.0%
CTTATAGCTTCTGCTGCACG+TGG + chr1.2:27569439-27569458 MS.gene061617:CDS 50.0%
GACTCGTCACTAGCATAACG+AGG - chr1.2:27569955-27569974 None:intergenic 50.0%
GGAGGGATAGAAGTTGTTGG+TGG - chr1.2:27568878-27568897 None:intergenic 50.0%
GTCCACGTGGAAGAAACTGT+GGG - chr1.2:27569261-27569280 None:intergenic 50.0%
TCCAGATATGACACGTGCTG+CGG - chr1.2:27569473-27569492 None:intergenic 50.0%
TCCGCCACAATCTCAAACTC+CGG - chr1.2:27570480-27570499 None:intergenic 50.0%
TCTCTCCATCGAGCATACGA+TGG + chr1.2:27570080-27570099 MS.gene061617:CDS 50.0%
TCTCTCCATCGTATGCTCGA+TGG - chr1.2:27570088-27570107 None:intergenic 50.0%
! CCAGTGTCGCCGTCAATTTT+AGG - chr1.2:27569679-27569698 None:intergenic 50.0%
! TTTGAGGTTATGGGTGGTGG+TGG - chr1.2:27569014-27569033 None:intergenic 50.0%
!! AGTTTTTGTGGGGGGTGTAG+TGG - chr1.2:27568972-27568991 None:intergenic 50.0%
!! GGGAGTGATGATGGTGTTTG+TGG - chr1.2:27569040-27569059 None:intergenic 50.0%
!!! AGGGTGCCGTATGGTTTTCA+TGG + chr1.2:27570516-27570535 MS.gene061617:CDS 50.0%
AAACCATACGGCACCCTCCT+TGG - chr1.2:27570513-27570532 None:intergenic 55.0%
AAGAGGTGGTAAGGTCCACG+TGG - chr1.2:27569274-27569293 None:intergenic 55.0%
ACCGCAGCACGTGTCATATC+TGG + chr1.2:27569469-27569488 MS.gene061617:CDS 55.0%
ACGCGATCAATGCGTGGGAT+GGG + chr1.2:27570016-27570035 MS.gene061617:CDS 55.0%
CATGCACGCGATCAATGCGT+GGG + chr1.2:27570011-27570030 MS.gene061617:CDS 55.0%
GAGGGAGGATGGTGAAGAAG+AGG + chr1.2:27570377-27570396 MS.gene061617:CDS 55.0%
GGACCTTACCACCTCTTCGA+CGG + chr1.2:27569277-27569296 MS.gene061617:CDS 55.0%
GGAGGTGAAGTTGCCAAGGA+GGG + chr1.2:27570497-27570516 MS.gene061617:CDS 55.0%
GGTCCACGTGGAAGAAACTG+TGG - chr1.2:27569262-27569281 None:intergenic 55.0%
GTGGGATGGGGAAGATGATG+AGG + chr1.2:27570029-27570048 MS.gene061617:CDS 55.0%
GTGTTGGAGGGAGTTCGTCT+AGG - chr1.2:27569171-27569190 None:intergenic 55.0%
TACCACCTCTTCGACGGTGA+TGG + chr1.2:27569283-27569302 MS.gene061617:CDS 55.0%
TATGACACGTGCTGCGGTGA+CGG - chr1.2:27569467-27569486 None:intergenic 55.0%
TCACCGTCGAAGAGGTGGTA+AGG - chr1.2:27569283-27569302 None:intergenic 55.0%
TCATGCACGCGATCAATGCG+TGG + chr1.2:27570010-27570029 MS.gene061617:CDS 55.0%
TCCTCCCTCGCCACGAAAAA+CGG - chr1.2:27570366-27570385 None:intergenic 55.0%
! GCCGGAGTTTGAGATTGTGG+CGG + chr1.2:27570476-27570495 MS.gene061617:CDS 55.0%
! GGAGTTTGAGATTGTGGCGG+AGG + chr1.2:27570479-27570498 MS.gene061617:CDS 55.0%
! GTCGCCGGAGTTTGAGATTG+TGG + chr1.2:27570473-27570492 MS.gene061617:CDS 55.0%
! TAAGCGCCGTTAAGTGACGG+TGG - chr1.2:27569220-27569239 None:intergenic 55.0%
! TTTTTCGTGGCGAGGGAGGA+TGG + chr1.2:27570366-27570385 MS.gene061617:CDS 55.0%
!! TTATGGGTGGTGGTGGTGGT+GGG - chr1.2:27569007-27569026 None:intergenic 55.0%
!! TTTTGTGGGGGGTGTAGTGG+TGG - chr1.2:27568969-27568988 None:intergenic 55.0%
!!! TGAGCCGTTTTTCGTGGCGA+GGG + chr1.2:27570359-27570378 MS.gene061617:CDS 55.0%
!!! TGGTGGTGAGCCGTTTTTCG+TGG + chr1.2:27570353-27570372 MS.gene061617:CDS 55.0%
CACGCGATCAATGCGTGGGA+TGG + chr1.2:27570015-27570034 MS.gene061617:CDS 60.0%
CGCGATCAATGCGTGGGATG+GGG + chr1.2:27570017-27570036 MS.gene061617:CDS 60.0%
CGGAGGTGAAGTTGCCAAGG+AGG + chr1.2:27570496-27570515 MS.gene061617:CDS 60.0%
GCATGCCATCACCGTCGAAG+AGG - chr1.2:27569291-27569310 None:intergenic 60.0%
TGCCATCACCGTCGAAGAGG+TGG - chr1.2:27569288-27569307 None:intergenic 60.0%
TGGCGGAGGTGAAGTTGCCA+AGG + chr1.2:27570493-27570512 MS.gene061617:CDS 60.0%
! GGAGGGAGTTCGTCTAGGAC+TGG - chr1.2:27569166-27569185 None:intergenic 60.0%
!! GAGGTTATGGGTGGTGGTGG+TGG - chr1.2:27569011-27569030 None:intergenic 60.0%
!! GGTGATGGATGCGAAGTCGC+CGG + chr1.2:27570458-27570477 MS.gene061617:CDS 60.0%
!! GTTATGGGTGGTGGTGGTGG+TGG - chr1.2:27569008-27569027 None:intergenic 60.0%
!! TATGGGTGGTGGTGGTGGTG+GGG - chr1.2:27569006-27569025 None:intergenic 60.0%
!! TTGCCAAGGAGGGTGCCGTA+TGG + chr1.2:27570507-27570526 MS.gene061617:CDS 60.0%
!!! GTGAGCCGTTTTTCGTGGCG+AGG + chr1.2:27570358-27570377 MS.gene061617:CDS 60.0%
! TGTGGGGGGTGTAGTGGTGG+TGG - chr1.2:27568966-27568985 None:intergenic 65.0%
!! ATGGGTGGTGGTGGTGGTGG+GGG - chr1.2:27569005-27569024 None:intergenic 65.0%
!!! GCCGTTTTTCGTGGCGAGGG+AGG + chr1.2:27570362-27570381 MS.gene061617:CDS 65.0%
!! GTGGTGGTGGTGGGGGGTGT+AGG - chr1.2:27568998-27569017 None:intergenic 70.0%
!! TGGGTGGTGGTGGTGGTGGG+GGG - chr1.2:27569004-27569023 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 27568839 27570584 27568839 ID=MS.gene061617
chr1.2 mRNA 27568839 27570584 27568839 ID=MS.gene061617.t1;Parent=MS.gene061617
chr1.2 exon 27568839 27570584 27568839 ID=MS.gene061617.t1.exon1;Parent=MS.gene061617.t1
chr1.2 CDS 27568839 27570584 27568839 ID=cds.MS.gene061617.t1;Parent=MS.gene061617.t1
Gene Sequence

>MS.gene061617

ATGATCCCAAAACCCATCATAATAACAAGCAAGCAACCACCAACAACTTCTATCCCTCCCTTTAACATCTCATCCATCAAAACCAAAGAAAAACCCCAAACATCACAATCCCAGACACTAAAAACCACCACCACTACACCCCCCACAAAAACTCTTCCTACACCCCCCACCACCACCACCACCCATAACCTCAAAAAACCACAAACACCATCATCACTCCCAGCATTACTACTCAACACATTCGACGACATCATCAACACCTTCATAGACCCACCAATAAAACCATCTGTAGATCCAAGACATGTTTTGTCTCAAAACTTTGCACCAGTCCTAGACGAACTCCCTCCAACACAATGTGAAATCATTAAAGGCACACTTCCACCGTCACTTAACGGCGCTTACATAAGAAATGGACCAAACCCACAGTTTCTTCCACGTGGACCTTACCACCTCTTCGACGGTGATGGCATGCTTCACGCCATTACAATCTCAAACGGAAAAGCCACACTCTGTAGCCGTTACGTTCAAACTTACAAATACAAAATCGAAAACGAAGCTGGTTACCAACTTATCCCAAACGTGTTTTCTGGTTTCAACTCGCTTATAGCTTCTGCTGCACGTGGCTCCGTCACCGCAGCACGTGTCATATCTGGACAATACAATCCTTCTAACGGAATTGGTTTAGCCAACACAAGTTTGGCTTTGTTTGGTAACAAACTTTTTGCTTTAGGAGAATCAGACCTTCCTTATGAAATCAAGCTTACACCAAACGGTGATATCCAAACAATCGGCCGTCAAGATTTTAACGGCAAACTCTCCATGAGTATGACTGCTCATCCTAAAATTGACGGCGACACTGGTGAAACTTTTGCTTTCCGTTACGGTCCTATGCCACCATTTTTAACCTATTTCCGTTTTGATGCAAATGGTGTTAAACATAACGATGTTCCGGTTTTCTCCATGACAAGACCTTCTTTTCTTCATGATTTCGCCATTACTAAAAAGTATGCTGTGTTTACGGATATTCAGCTTGGTATGAATCCTCTTGACATGATTTCTGGTGGTTCTCCAGTAGGTTCCGATCCATCAAAAGTTTCAAGGATCGGAATTATACCTCGTTATGCTAGTGACGAGTCGAAGATGAAATGGTTCGATGTGCCAGGATTTAATATCATGCACGCGATCAATGCGTGGGATGGGGAAGATGATGAGGATACTGTGACACTAATTGCTCCGAATGTTCTCTCCATCGAGCATACGATGGAGAGACTTGAGCTTGTGCATGCAATGATTGAGAAAGTGAAGATTAATATCAAAACTGGGATTGTATCAAGACAACCATTATCAGTGCGAAACCTAGATTTCGGGGTGATAAATGGTGATTACATGGGGAAAAAGAATAGGTTTGTTTATGCGGCAATTGGGAATCCAATGCCAAAGATTTCAGGAGTGGTGAAGATAGATGTGTTGAAAGGTGAGGAAGTTGGATGTAGGTTGTATGGAGAGGGTTGTTATGGTGGTGAGCCGTTTTTCGTGGCGAGGGAGGATGGTGAAGAAGAGGATGATGGTTATTTGGTGAGTTATGTGCATGATGAGAAGAAGGGAGAGTCAAGGTTTTTGGTGATGGATGCGAAGTCGCCGGAGTTTGAGATTGTGGCGGAGGTGAAGTTGCCAAGGAGGGTGCCGTATGGTTTTCATGGATTATTTGTGAAGGAGAGTGACATCACCAAGTTGTCGGTGTCGTAG

Protein sequence

>MS.gene061617.t1

MIPKPIIITSKQPPTTSIPPFNISSIKTKEKPQTSQSQTLKTTTTTPPTKTLPTPPTTTTTHNLKKPQTPSSLPALLLNTFDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCEIIKGTLPPSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAITISNGKATLCSRYVQTYKYKIENEAGYQLIPNVFSGFNSLIASAARGSVTAARVISGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEIKLTPNGDIQTIGRQDFNGKLSMSMTAHPKIDGDTGETFAFRYGPMPPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDFAITKKYAVFTDIQLGMNPLDMISGGSPVGSDPSKVSRIGIIPRYASDESKMKWFDVPGFNIMHAINAWDGEDDEDTVTLIAPNVLSIEHTMERLELVHAMIEKVKINIKTGIVSRQPLSVRNLDFGVINGDYMGKKNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRLYGEGCYGGEPFFVAREDGEEEDDGYLVSYVHDEKKGESRFLVMDAKSPEFEIVAEVKLPRRVPYGFHGLFVKESDITKLSVS