AlfalfaGEDB | MS.gene47833

M. sativa cultivar XinJiangDaYe / MS.gene47833

KEGG: K08915
GO: -
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47833.t1	RHN58791.1	99.2	120	1	0	1	120	228	347	2.60E-60	241.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47833.t1	Q07473	94.2	120	7	0	1	120	171	290	6.5e-60	231.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47833.t1	B7FIZ5	99.2	120	1	0	1	120	170	289	1.9e-60	241.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene47833	0.82598	3.49E-54	-1.69E-46
MS.gene049171	MS.gene47833	0.896991	2.17E-76	-1.69E-46
MS.gene049173	MS.gene47833	0.827316	1.67E-54	-1.69E-46
MS.gene049217	MS.gene47833	0.851207	1.03E-60	-1.69E-46
MS.gene049222	MS.gene47833	0.88097	3.54E-70	-1.69E-46
MS.gene049232	MS.gene47833	0.848278	6.79E-60	-1.69E-46
MS.gene049285	MS.gene47833	0.909583	4.85E-82	-1.69E-46
MS.gene049320	MS.gene47833	0.936687	1.17E-97	-1.69E-46
MS.gene049427	MS.gene47833	0.817537	3.13E-52	-1.69E-46
MS.gene049609	MS.gene47833	0.910212	2.41E-82	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47833.t1	MTR_4g015570	99.167	120	1	0	1	120	170	289	6.57e-83	244
MS.gene47833.t1	MTR_3g070340	82.524	103	18	0	1	103	173	275	2.66e-54	171
MS.gene47833.t1	MTR_6g033320	49.541	109	52	3	7	113	127	234	2.97e-29	106
MS.gene47833.t1	MTR_6g060175	43.802	121	64	3	3	120	153	272	5.00e-25	95.9
MS.gene47833.t1	MTR_6g060175	43.802	121	64	3	3	120	163	282	6.57e-25	95.9
MS.gene47833.t1	MTR_2g081090	44.545	110	55	3	6	109	113	222	1.02e-21	86.3
MS.gene47833.t1	MTR_6g012110	45.133	113	55	4	6	112	142	253	1.80e-21	86.3
MS.gene47833.t1	MTR_6g012080	45.133	113	55	4	6	112	142	253	1.94e-21	86.3
MS.gene47833.t1	MTR_6g011880	45.133	113	55	4	6	112	142	253	2.34e-21	85.9
MS.gene47833.t1	MTR_2g081090	44.545	110	55	3	6	109	140	249	2.35e-21	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47833.t1	AT3G08940	94.167	120	7	0	1	120	168	287	6.87e-79	234
MS.gene47833.t1	AT5G01530	94.167	120	7	0	1	120	171	290	1.09e-78	233
MS.gene47833.t1	AT2G40100	80.583	103	19	1	1	103	172	273	2.84e-52	166
MS.gene47833.t1	AT3G54890	52.252	111	50	3	7	115	126	235	2.97e-32	114
MS.gene47833.t1	AT4G10340	44.628	121	63	3	3	120	154	273	2.38e-24	94.4
MS.gene47833.t1	AT1G29920	47.368	114	52	5	6	112	143	255	4.99e-23	90.5
MS.gene47833.t1	AT1G29910	47.368	114	52	5	6	112	143	255	4.99e-23	90.5
MS.gene47833.t1	AT1G29930	47.368	114	52	5	6	112	143	255	4.99e-23	90.5
MS.gene47833.t1	AT2G34430	47.368	114	52	4	6	112	142	254	6.46e-23	90.1
MS.gene47833.t1	AT2G34420	47.368	114	52	4	6	112	141	253	6.91e-23	90.1

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Find 25 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGCAACACTTCAAT+TGG	0.404848	4.4:+84920913	MS.gene47833:CDS
ATAAGTGTTGTGATAGAGAA+TGG	0.479242	4.4:-84920767	None:intergenic
CAAACATGCTCGTCTTGCTA+TGG	0.544135	4.4:+84920943	MS.gene47833:CDS
CAAGAACTAAGAGGAAGAAA+AGG	0.500205	4.4:-84921071	None:intergenic
CAAGCTGCTGCTACTGGTAA+AGG	0.448841	4.4:+84920989	MS.gene47833:CDS
CAGCTTGAACAGCAAAACCA+AGG	0.638361	4.4:-84920973	None:intergenic
CATCAAGCTCAGCATTTCTC+TGG	0.414677	4.4:-84920826	None:intergenic
CTTGCTATGGTTGCTTTCCT+TGG	0.358398	4.4:+84920956	MS.gene47833:CDS
GAAAAGAGACTATACCCAGG+TGG	0.723166	4.4:+84920851	MS.gene47833:CDS
GCAGAAAAGAGACTATACCC+AGG	0.746677	4.4:+84920848	MS.gene47833:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGCAACACTTCAAT+TGG	+	chr4.4:84920913-84920932	MS.gene47833:CDS	30.0%
TAAAGGACCACTTAACAATT+GGG	+	chr4.4:84921006-84921025	MS.gene47833:CDS	30.0%
GTAAAGGACCACTTAACAAT+TGG	+	chr4.4:84921005-84921024	MS.gene47833:CDS	35.0%
GTAGAAGGATCAACATATCT+TGG	+	chr4.4:84920734-84920753	MS.gene47833:CDS	35.0%
TCTCTATCACAACACTTATC+TGG	+	chr4.4:84920771-84920790	MS.gene47833:CDS	35.0%
GGAAAATTCTTTGACCCACT+TGG	+	chr4.4:84920872-84920891	MS.gene47833:CDS	40.0%
GTTGTGATAGAGAATGGAAG+TGG	-	chr4.4:84920764-84920783	None:intergenic	40.0%
TGAGTAGCCCAATTGTTAAG+TGG	-	chr4.4:84921016-84921035	None:intergenic	40.0%
CAAACATGCTCGTCTTGCTA+TGG	+	chr4.4:84920943-84920962	MS.gene47833:CDS	45.0%
CAGCTTGAACAGCAAAACCA+AGG	-	chr4.4:84920976-84920995	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	84920725	84921087	84920725	ID=MS.gene47833
chr4.4	mRNA	84920725	84921087	84920725	ID=MS.gene47833.t1;Parent=MS.gene47833
chr4.4	exon	84920725	84921087	84920725	ID=MS.gene47833.t1.exon1;Parent=MS.gene47833.t1
chr4.4	CDS	84920725	84921087	84920725	ID=cds.MS.gene47833.t1;Parent=MS.gene47833.t1

Gene Sequence	>MS.gene47833 GTTGAGCTAGTAGAAGGATCAACATATCTTGGACAACCACTTCCATTCTCTATCACAACACTTATCTGGATCGAAGTTCTAGTAATTGGCTACATTGAATTCCAGAGAAATGCTGAGCTTGATGCAGAAAAGAGACTATACCCAGGTGGAAAATTCTTTGACCCACTTGGCTTAGCATCTGACCCAGAAAAGAAAGCAACACTTCAATTGGCAGAAATCAAACATGCTCGTCTTGCTATGGTTGCTTTCCTTGGTTTTGCTGTTCAAGCTGCTGCTACTGGTAAAGGACCACTTAACAATTGGGCTACTCATTTGAGTGATCCTCTTCACACTACCATCATTGATACCTTTTCTTCCTCTTAG
Protein sequence	>MS.gene47833.t1 VELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDAEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS