AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004736.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004736.01.T01 MTR_1g085550 94.231 208 9 2 1 208 70 274 1.62e-139 391
MsG0180004736.01.T01 MTR_8g094800 39.860 143 70 4 33 174 107 234 4.62e-19 85.1
MsG0180004736.01.T01 MTR_8g094800 30.216 139 77 3 26 164 350 468 1.92e-12 65.9
MsG0180004736.01.T01 MTR_8g094800 39.860 143 70 4 33 174 107 234 5.21e-19 85.1
MsG0180004736.01.T01 MTR_8g094800 30.216 139 77 3 26 164 350 468 1.35e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004736.01.T01 AT4G01650 59.391 197 73 4 11 203 16 209 1.61e-77 231
MsG0180004736.01.T01 AT4G01650 59.391 197 73 4 11 203 93 286 4.81e-76 231
MsG0180004736.01.T01 AT4G01650 65.854 123 40 1 16 138 100 220 8.11e-54 172
MsG0180004736.01.T01 AT5G08720 37.576 165 86 5 33 196 97 245 1.75e-21 92.4
MsG0180004736.01.T01 AT5G08720 30.935 139 76 3 26 164 328 446 2.00e-11 63.2

Find 42 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCCCTTACGGATTTA+AGG 0.163287 1:-81954787 None:intergenic
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 1:-81952144 None:intergenic
TTCAGCTCTTCGAAGGAAAA+TGG 0.305062 1:+81953930 MsG0180004736.01.T01:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 1:+81952089 MsG0180004736.01.T01:CDS
CTCAGTAAATTGATCCAAAA+AGG 0.327199 1:+81952119 MsG0180004736.01.T01:CDS
GGAGAGCAGAACTTGGCATT+TGG 0.347544 1:+81953800 MsG0180004736.01.T01:CDS
GAGAGCAGAACTTGGCATTT+GGG 0.357576 1:+81953801 MsG0180004736.01.T01:CDS
AGATGTGGTTGCCGCCCGTT+CGG 0.394683 1:+81954726 MsG0180004736.01.T01:CDS
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 1:+81951951 MsG0180004736.01.T01:CDS
TTTCTGAGCTTCACCCCTTA+CGG 0.425093 1:-81954795 None:intergenic
GCCGCCCGTTCGGCTGATAG+AGG 0.426859 1:+81954736 MsG0180004736.01.T01:CDS
CTACCCTCTATCAGCCGAAC+GGG 0.436299 1:-81954740 None:intergenic
ACGCTTCACTTGATTCCATT+GGG 0.443130 1:+81952045 MsG0180004736.01.T01:CDS
GGGTTAAAATTTGATGCTAA+AGG 0.447148 1:+81953821 MsG0180004736.01.T01:CDS
GTCGTGTTAATTTCTCGAAC+CGG 0.460132 1:-81954674 None:intergenic
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 1:-81952143 None:intergenic
ACGGGCGGCAACCACATCTT+CGG 0.470679 1:-81954722 None:intergenic
GACGCTTCACTTGATTCCAT+TGG 0.471061 1:+81952044 MsG0180004736.01.T01:CDS
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 1:+81951952 MsG0180004736.01.T01:CDS
ATAGACTTCAAGATGATTGA+AGG 0.479763 1:+81953902 MsG0180004736.01.T01:CDS
CTTGACTGATTATGAAAGGT+TGG 0.487454 1:+81952073 MsG0180004736.01.T01:CDS
AAAAGAACCTTAAATCCGTA+AGG 0.508599 1:+81954780 MsG0180004736.01.T01:CDS
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 1:+81951941 MsG0180004736.01.T01:CDS
GAATTGGAGACTCTTCCATC+TGG 0.520472 1:+81953866 MsG0180004736.01.T01:CDS
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 1:+81954655 MsG0180004736.01.T01:CDS
ACAGATTGGAGAGCAGAACT+TGG 0.540322 1:+81953793 MsG0180004736.01.T01:intron
ATATCTTGACTGATTATGAA+AGG 0.551270 1:+81952069 MsG0180004736.01.T01:CDS
AAAGAACCTTAAATCCGTAA+GGG 0.553093 1:+81954781 MsG0180004736.01.T01:CDS
TAGACTTCAAGATGATTGAA+GGG 0.561714 1:+81953903 MsG0180004736.01.T01:CDS
CCGCCCGTTCGGCTGATAGA+GGG 0.568289 1:+81954737 MsG0180004736.01.T01:CDS
ATTCACGCAGAATTGAGTCT+AGG 0.570895 1:+81952012 MsG0180004736.01.T01:CDS
CCCTCTATCAGCCGAACGGG+CGG 0.578336 1:-81954737 None:intergenic
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 1:+81951953 MsG0180004736.01.T01:CDS
ATGTCACGCTTCATACCAGA+TGG 0.591702 1:-81953881 None:intergenic
ATCAGTCAAGATATTCCCAA+TGG 0.592596 1:-81952060 None:intergenic
TGGGACTTTATTGGTGACAG+AGG 0.604754 1:+81951911 None:intergenic
AGACTTCAAGATGATTGAAG+GGG 0.615498 1:+81953904 MsG0180004736.01.T01:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 1:-81952107 None:intergenic
AAGAACCTTAAATCCGTAAG+GGG 0.627039 1:+81954782 MsG0180004736.01.T01:CDS
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 1:+81954646 MsG0180004736.01.T01:CDS
TCTACCCTCTATCAGCCGAA+CGG 0.648369 1:-81954741 None:intergenic
TTGATGTTAAGCCGAAGATG+TGG 0.693995 1:+81954711 MsG0180004736.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTCATTTTTTATTAAT+CGG + Chr1:81952298-81952317 MsG0180004736.01.T01:intron 10.0%
!! AATACACATAATCTTTAATA+CGG - Chr1:81952487-81952506 None:intergenic 15.0%
!! GATAAGAAGAAAAAAAAAAT+AGG + Chr1:81953158-81953177 MsG0180004736.01.T01:intron 15.0%
!! TAAAATTTACATAAACTTAG+TGG + Chr1:81954334-81954353 MsG0180004736.01.T01:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG - Chr1:81954144-81954163 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG + Chr1:81954261-81954280 MsG0180004736.01.T01:intron 15.0%
!! TTGTTTATATTGCAAATTTA+GGG - Chr1:81952918-81952937 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG - Chr1:81952919-81952938 None:intergenic 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG + Chr1:81952642-81952661 MsG0180004736.01.T01:intron 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG + Chr1:81953031-81953050 MsG0180004736.01.T01:intron 15.0%
!!! ATTTTCTTGAAAAGTAAATT+TGG + Chr1:81953736-81953755 MsG0180004736.01.T01:intron 15.0%
!!! CTATTCATTTTTTATTAATC+GGG + Chr1:81952299-81952318 MsG0180004736.01.T01:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG - Chr1:81954328-81954347 None:intergenic 15.0%
!! AATTGCACATATTGAAAATT+GGG - Chr1:81954512-81954531 None:intergenic 20.0%
!! ATAATCTTTAATACGGATAA+TGG - Chr1:81952480-81952499 None:intergenic 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG + Chr1:81952667-81952686 MsG0180004736.01.T01:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG + Chr1:81953543-81953562 MsG0180004736.01.T01:intron 20.0%
!! GTATTAAAGATTATGTGTAT+TGG + Chr1:81952486-81952505 MsG0180004736.01.T01:intron 20.0%
!! TAATCTTTAATACGGATAAT+GGG - Chr1:81952479-81952498 None:intergenic 20.0%
!! TGGTGAAAATAATGAAAAAT+TGG - Chr1:81954188-81954207 None:intergenic 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG + Chr1:81952763-81952782 MsG0180004736.01.T01:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG - Chr1:81954129-81954148 None:intergenic 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG + Chr1:81952858-81952877 MsG0180004736.01.T01:intron 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG + Chr1:81954301-81954320 MsG0180004736.01.T01:intron 20.0%
!!! AGGATATGATTTTGAATATT+AGG + Chr1:81953522-81953541 MsG0180004736.01.T01:intron 20.0%
!!! TAGGAATTACTCTAATTTTT+TGG - Chr1:81952436-81952455 None:intergenic 20.0%
! AAAAACAGGAGTTGAAAATT+AGG + Chr1:81954275-81954294 MsG0180004736.01.T01:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG - Chr1:81952455-81952474 None:intergenic 25.0%
! AGATATAAAAGTAGTAGGAA+GGG + Chr1:81952672-81952691 MsG0180004736.01.T01:intron 25.0%
! ATATCTTGACTGATTATGAA+AGG + Chr1:81952069-81952088 MsG0180004736.01.T01:CDS 25.0%
! ATATTGTATTAGTGTTGTGT+TGG + Chr1:81952265-81952284 MsG0180004736.01.T01:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG - Chr1:81954511-81954530 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG - Chr1:81954513-81954532 None:intergenic 25.0%
! TAACTATACCTTTAAACTGT+GGG + Chr1:81953392-81953411 MsG0180004736.01.T01:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG - Chr1:81953632-81953651 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG + Chr1:81952671-81952690 MsG0180004736.01.T01:intron 25.0%
! TATGATTTCCATATATGTCA+TGG + Chr1:81953328-81953347 MsG0180004736.01.T01:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG + Chr1:81952266-81952285 MsG0180004736.01.T01:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG - Chr1:81953246-81953265 None:intergenic 25.0%
!! CATTGAATTTCTAAAGGTTA+AGG - Chr1:81953658-81953677 None:intergenic 25.0%
!! CTTAACCTTTAGAAATTCAA+TGG + Chr1:81953656-81953675 MsG0180004736.01.T01:intron 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG + Chr1:81952974-81952993 MsG0180004736.01.T01:intron 25.0%
!! TTAGAACTATACAGTTTGTT+TGG - Chr1:81952760-81952779 None:intergenic 25.0%
!! TTTTTGGATCAATTTACTGA+GGG - Chr1:81952120-81952139 None:intergenic 25.0%
!!! AACAAAAGTCTTATTGATTG+AGG + Chr1:81952933-81952952 MsG0180004736.01.T01:intron 25.0%
!!! ACAAAAGTCTTATTGATTGA+GGG + Chr1:81952934-81952953 MsG0180004736.01.T01:intron 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG + Chr1:81953850-81953869 MsG0180004736.01.T01:CDS 25.0%
!!! ATTACATTTTGAAACCATGT+AGG + Chr1:81954558-81954577 MsG0180004736.01.T01:intron 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG + Chr1:81952762-81952781 MsG0180004736.01.T01:intron 25.0%
!!! TTCATTTTTTATTAATCGGG+CGG + Chr1:81952302-81952321 MsG0180004736.01.T01:intron 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG + Chr1:81954081-81954100 MsG0180004736.01.T01:intron 25.0%
AAAAGAACCTTAAATCCGTA+AGG + Chr1:81954780-81954799 MsG0180004736.01.T01:CDS 30.0%
AAAGAACCTTAAATCCGTAA+GGG + Chr1:81954781-81954800 MsG0180004736.01.T01:CDS 30.0%
AAATCGAGAAAATAGAGCTA+AGG + Chr1:81952328-81952347 MsG0180004736.01.T01:intron 30.0%
ACATACTTCCATGACATATA+TGG - Chr1:81953339-81953358 None:intergenic 30.0%
ATAGACTTCAAGATGATTGA+AGG + Chr1:81953902-81953921 MsG0180004736.01.T01:CDS 30.0%
ATAGGTCAACATGATTATGT+TGG + Chr1:81953176-81953195 MsG0180004736.01.T01:intron 30.0%
ATCCAGAAGAATTCATAAGA+GGG - Chr1:81953986-81954005 None:intergenic 30.0%
ATGATTATATGCCATGAAGT+AGG - Chr1:81953282-81953301 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG + Chr1:81952119-81952138 MsG0180004736.01.T01:CDS 30.0%
GATATAAAAGTAGTAGGAAG+GGG + Chr1:81952673-81952692 MsG0180004736.01.T01:intron 30.0%
GGGTTAAAATTTGATGCTAA+AGG + Chr1:81953821-81953840 MsG0180004736.01.T01:CDS 30.0%
GTAACTATACCTTTAAACTG+TGG + Chr1:81953391-81953410 MsG0180004736.01.T01:intron 30.0%
GTTCCATTATCTTAACAGAT+TGG + Chr1:81953779-81953798 MsG0180004736.01.T01:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG - Chr1:81953647-81953666 None:intergenic 30.0%
TAGACTTCAAGATGATTGAA+GGG + Chr1:81953903-81953922 MsG0180004736.01.T01:CDS 30.0%
TAGAGTAATTCCTACTTTCT+AGG + Chr1:81952442-81952461 MsG0180004736.01.T01:intron 30.0%
TCAAACCAAATTTACGAACA+GGG - Chr1:81953713-81953732 None:intergenic 30.0%
TCTCCAATCTGTTAAGATAA+TGG - Chr1:81953785-81953804 None:intergenic 30.0%
TGCTTTAACAGTAACACTTT+AGG - Chr1:81953216-81953235 None:intergenic 30.0%
TTCAAACCAAATTTACGAAC+AGG - Chr1:81953714-81953733 None:intergenic 30.0%
TTCTTATCTACTCTAGTATG+AGG - Chr1:81953146-81953165 None:intergenic 30.0%
TTGACATAAAATGACCTTGT+TGG - Chr1:81952714-81952733 None:intergenic 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG + Chr1:81953217-81953236 MsG0180004736.01.T01:intron 30.0%
! ATATTGCAAATTTAGGGCAA+AGG - Chr1:81952912-81952931 None:intergenic 30.0%
! CTTTTTGGATCAATTTACTG+AGG - Chr1:81952121-81952140 None:intergenic 30.0%
! TTTTTCCCTGTTCGTAAATT+TGG + Chr1:81953705-81953724 MsG0180004736.01.T01:intron 30.0%
!! CAAAAGTCTTATTGATTGAG+GGG + Chr1:81952935-81952954 MsG0180004736.01.T01:intron 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG + Chr1:81954062-81954081 MsG0180004736.01.T01:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG + Chr1:81954373-81954392 MsG0180004736.01.T01:intron 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG + Chr1:81952877-81952896 MsG0180004736.01.T01:intron 30.0%
AAATGGAGTGCATCTTATCT+TGG + Chr1:81954390-81954409 MsG0180004736.01.T01:intron 35.0%
AAGAACCTTAAATCCGTAAG+GGG + Chr1:81954782-81954801 MsG0180004736.01.T01:CDS 35.0%
AAGTATGTATGCATCAATCG+TGG + Chr1:81953351-81953370 MsG0180004736.01.T01:intron 35.0%
ACAATCAACATTGTTGAGCT+AGG - Chr1:81952357-81952376 None:intergenic 35.0%
ACATAAAATGACCTTGTTGG+TGG - Chr1:81952711-81952730 None:intergenic 35.0%
AGACTTCAAGATGATTGAAG+GGG + Chr1:81953904-81953923 MsG0180004736.01.T01:CDS 35.0%
AGTATGTATGCATCAATCGT+GGG + Chr1:81953352-81953371 MsG0180004736.01.T01:intron 35.0%
ATCAGTCAAGATATTCCCAA+TGG - Chr1:81952063-81952082 None:intergenic 35.0%
ATCATAATCACAATCCCACT+TGG - Chr1:81954443-81954462 None:intergenic 35.0%
ATGTTAGATGCAGCTGTATT+AGG - Chr1:81952794-81952813 None:intergenic 35.0%
CAATCAACATTGTTGAGCTA+GGG - Chr1:81952356-81952375 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG - Chr1:81954507-81954526 None:intergenic 35.0%
CTTGACTGATTATGAAAGGT+TGG + Chr1:81952073-81952092 MsG0180004736.01.T01:CDS 35.0%
CTTGCAGGTATAATGCAATT+GGG + Chr1:81952160-81952179 MsG0180004736.01.T01:intron 35.0%
GATCCAGAAGAATTCATAAG+AGG - Chr1:81953987-81954006 None:intergenic 35.0%
GTTTAGTTGCATGCTTGATT+TGG + Chr1:81952552-81952571 MsG0180004736.01.T01:intron 35.0%
TAAGTTAGACACATTCACTC+AGG + Chr1:81952377-81952396 MsG0180004736.01.T01:intron 35.0%
TATGTGTATTGGACACAACA+CGG + Chr1:81952497-81952516 MsG0180004736.01.T01:intron 35.0%
TCTTGCAGGTATAATGCAAT+TGG + Chr1:81952159-81952178 MsG0180004736.01.T01:intron 35.0%
TTAGAAACTAGGACCATGTT+TGG - Chr1:81954317-81954336 None:intergenic 35.0%
TTATCTACTCTAGTATGAGG+TGG - Chr1:81953143-81953162 None:intergenic 35.0%
TTCCCTCTTATGAATTCTTC+TGG + Chr1:81953981-81954000 MsG0180004736.01.T01:intron 35.0%
TTGCAGGTATAATGCAATTG+GGG + Chr1:81952161-81952180 MsG0180004736.01.T01:intron 35.0%
! AAATGGTCTATTTTGCAGGT+AGG + Chr1:81953947-81953966 MsG0180004736.01.T01:intron 35.0%
! AATTTAGGGCAAAGGTCATA+AGG - Chr1:81952904-81952923 None:intergenic 35.0%
! ACTTGTTGAATACTCCTACA+TGG - Chr1:81954575-81954594 None:intergenic 35.0%
! AGCATTTAAAACCAGTCCAA+CGG - Chr1:81953062-81953081 None:intergenic 35.0%
! AGGAAAATGGTCTATTTTGC+AGG + Chr1:81953943-81953962 MsG0180004736.01.T01:CDS 35.0%
! AGTTTGCATGGTTTTTATGC+TGG - Chr1:81954009-81954028 None:intergenic 35.0%
! ATTCAGGTTATTGACCAAGT+GGG + Chr1:81954426-81954445 MsG0180004736.01.T01:intron 35.0%
! ATTTTCACCATTTCCTATGC+TGG + Chr1:81954198-81954217 MsG0180004736.01.T01:intron 35.0%
! TATTCAGGTTATTGACCAAG+TGG + Chr1:81954425-81954444 MsG0180004736.01.T01:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG - Chr1:81952420-81952439 None:intergenic 35.0%
!!! GATTCTAGCTAGCGTTTTTT+TGG + Chr1:81954356-81954375 MsG0180004736.01.T01:intron 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG + Chr1:81953502-81953521 MsG0180004736.01.T01:intron 35.0%
ACCAACTGATGTGTATTGCT+TGG - Chr1:81953444-81953463 None:intergenic 40.0%
ACGCTTCACTTGATTCCATT+GGG + Chr1:81952045-81952064 MsG0180004736.01.T01:CDS 40.0%
AGATGCACTCCATTTGTAGT+TGG - Chr1:81954385-81954404 None:intergenic 40.0%
AGTTGAAGATTCAGAGTCGT+TGG + Chr1:81951941-81951960 MsG0180004736.01.T01:CDS 40.0%
ATTCACGCAGAATTGAGTCT+AGG + Chr1:81952012-81952031 MsG0180004736.01.T01:CDS 40.0%
CATCATAGCATAGCCAAGTA+TGG + Chr1:81953574-81953593 MsG0180004736.01.T01:intron 40.0%
CTGCAAAACCATCATTGTCT+AGG - Chr1:81954624-81954643 None:intergenic 40.0%
GCTAACATCCTAGACAATGA+TGG + Chr1:81954613-81954632 MsG0180004736.01.T01:intron 40.0%
GTCGTGTTAATTTCTCGAAC+CGG - Chr1:81954677-81954696 None:intergenic 40.0%
TAGATGCAGCTGTATTAGGA+AGG - Chr1:81952790-81952809 None:intergenic 40.0%
TCAGTACTCCCACAGTTTAA+AGG - Chr1:81953403-81953422 None:intergenic 40.0%
TCCAAGCAATACACATCAGT+TGG + Chr1:81953440-81953459 MsG0180004736.01.T01:intron 40.0%
TGCAAGAGTCGAGCAAAATT+GGG - Chr1:81952146-81952165 None:intergenic 40.0%
TGGAAAGTCTGCGATTATTC+AGG + Chr1:81954410-81954429 MsG0180004736.01.T01:intron 40.0%
TTCAGCTCTTCGAAGGAAAA+TGG + Chr1:81953930-81953949 MsG0180004736.01.T01:CDS 40.0%
TTGATGTTAAGCCGAAGATG+TGG + Chr1:81954711-81954730 MsG0180004736.01.T01:CDS 40.0%
! ATGTGAAGCATCCTACTTCA+TGG + Chr1:81953268-81953287 MsG0180004736.01.T01:intron 40.0%
! CCTTTAGAAATTCAATGGCG+CGG + Chr1:81953661-81953680 MsG0180004736.01.T01:intron 40.0%
! GAGCAAAATTGGGACCTTTT+TGG - Chr1:81952136-81952155 None:intergenic 40.0%
! GTAGAGAGTGCATAAAACTC+TGG - Chr1:81954040-81954059 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG + Chr1:81952561-81952580 MsG0180004736.01.T01:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG - Chr1:81952739-81952758 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG - Chr1:81952740-81952759 None:intergenic 40.0%
AATTTACTGAGGGCAAGACC+AGG - Chr1:81952110-81952129 None:intergenic 45.0%
ACAGATTGGAGAGCAGAACT+TGG + Chr1:81953793-81953812 MsG0180004736.01.T01:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG - Chr1:81953137-81953156 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG + Chr1:81953043-81953062 MsG0180004736.01.T01:intron 45.0%
ATGTATGCATCAATCGTGGG+TGG + Chr1:81953355-81953374 MsG0180004736.01.T01:intron 45.0%
ATGTCACGCTTCATACCAGA+TGG - Chr1:81953884-81953903 None:intergenic 45.0%
CCGCGCCATTGAATTTCTAA+AGG - Chr1:81953664-81953683 None:intergenic 45.0%
CCTTGCAGCAAAACCATACT+TGG - Chr1:81953590-81953609 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG - Chr1:81952147-81952166 None:intergenic 45.0%
CTTCACCCCTTACGGATTTA+AGG - Chr1:81954790-81954809 None:intergenic 45.0%
GAATTGGAGACTCTTCCATC+TGG + Chr1:81953866-81953885 MsG0180004736.01.T01:CDS 45.0%
GACGCTTCACTTGATTCCAT+TGG + Chr1:81952044-81952063 MsG0180004736.01.T01:CDS 45.0%
GAGAGCAGAACTTGGCATTT+GGG + Chr1:81953801-81953820 MsG0180004736.01.T01:CDS 45.0%
TAAACGAAGTGGCAAGCACA+AGG - Chr1:81952409-81952428 None:intergenic 45.0%
TCCAAGACCAGCATAGGAAA+TGG - Chr1:81954208-81954227 None:intergenic 45.0%
TTTCAGCGATGGAAGTTGTG+AGG + Chr1:81954646-81954665 MsG0180004736.01.T01:CDS 45.0%
TTTCTGAGCTTCACCCCTTA+CGG - Chr1:81954798-81954817 None:intergenic 45.0%
! AATGACCTTGTTGGTGGATG+AGG - Chr1:81952705-81952724 None:intergenic 45.0%
! ACCATTTCCTATGCTGGTCT+TGG + Chr1:81954204-81954223 MsG0180004736.01.T01:intron 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG + Chr1:81951953-81951972 MsG0180004736.01.T01:CDS 45.0%
! AGGTTGGCTGATTTCATTCC+TGG + Chr1:81952089-81952108 MsG0180004736.01.T01:CDS 45.0%
! CAATTTTGCTCGACTCTTGC+AGG + Chr1:81952145-81952164 MsG0180004736.01.T01:CDS 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG + Chr1:81951952-81951971 MsG0180004736.01.T01:CDS 45.0%
! GTGTTTTCCAAGACCAGCAT+AGG - Chr1:81954214-81954233 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG + Chr1:81954635-81954654 MsG0180004736.01.T01:intron 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG + Chr1:81951951-81951970 MsG0180004736.01.T01:CDS 45.0%
!! AACTGTGGGAGTACTGATCT+TGG + Chr1:81953406-81953425 MsG0180004736.01.T01:intron 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG + Chr1:81953587-81953606 MsG0180004736.01.T01:intron 45.0%
AAAGCATAGGCGTCCATGAG+TGG + Chr1:81953230-81953249 MsG0180004736.01.T01:intron 50.0%
AGTGGTTGTGGGCGTCTATT+AGG - Chr1:81953104-81953123 None:intergenic 50.0%
CTAGTATGAGGTGGTTGTGG+TGG - Chr1:81953134-81953153 None:intergenic 50.0%
CTCACGAGGACTGTGCTATA+AGG + Chr1:81952522-81952541 MsG0180004736.01.T01:intron 50.0%
GGAGAGCAGAACTTGGCATT+TGG + Chr1:81953800-81953819 MsG0180004736.01.T01:CDS 50.0%
GGCGTCTATTAGGGTAATGC+AGG - Chr1:81953094-81953113 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG - Chr1:81953103-81953122 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG + Chr1:81953103-81953122 MsG0180004736.01.T01:intron 50.0%
TATGCATCAATCGTGGGTGG+TGG + Chr1:81953358-81953377 MsG0180004736.01.T01:intron 50.0%
TCTACCCTCTATCAGCCGAA+CGG - Chr1:81954744-81954763 None:intergenic 50.0%
TGGAAGTTGTGAGGACTCTC+CGG + Chr1:81954655-81954674 MsG0180004736.01.T01:CDS 50.0%
TTCCTCCTCATCCACCAACA+AGG + Chr1:81952697-81952716 MsG0180004736.01.T01:intron 50.0%
! GGGGATTTTCAGCTCTTCGA+AGG + Chr1:81953923-81953942 MsG0180004736.01.T01:CDS 50.0%
ATACGGTCAGTCCGTTGGAC+TGG + Chr1:81953048-81953067 MsG0180004736.01.T01:intron 55.0%
CTACCCTCTATCAGCCGAAC+GGG - Chr1:81954743-81954762 None:intergenic 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG - Chr1:81954021-81954040 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG - Chr1:81952702-81952721 None:intergenic 55.0%
ACGGGCGGCAACCACATCTT+CGG - Chr1:81954725-81954744 None:intergenic 60.0%
AGATGTGGTTGCCGCCCGTT+CGG + Chr1:81954726-81954745 MsG0180004736.01.T01:CDS 60.0%
GACACAACACGGCTCTCACG+AGG + Chr1:81952508-81952527 MsG0180004736.01.T01:intron 60.0%
GTGGCTACGCCAGTGGTTGT+GGG - Chr1:81953115-81953134 None:intergenic 60.0%
CCCTCTATCAGCCGAACGGG+CGG - Chr1:81954740-81954759 None:intergenic 65.0%
CCGCCCGTTCGGCTGATAGA+GGG + Chr1:81954737-81954756 MsG0180004736.01.T01:CDS 65.0%
GGTGGCTACGCCAGTGGTTG+TGG - Chr1:81953116-81953135 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG - Chr1:81953122-81953141 None:intergenic 65.0%
GCCGCCCGTTCGGCTGATAG+AGG + Chr1:81954736-81954755 MsG0180004736.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81951921 81954856 81951921 ID=MsG0180004736.01;Name=MsG0180004736.01
Chr1 mRNA 81951921 81954856 81951921 ID=MsG0180004736.01.T01;Parent=MsG0180004736.01;Name=MsG0180004736.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|208
Chr1 exon 81951921 81952166 81951921 ID=MsG0180004736.01.T01:exon:34553;Parent=MsG0180004736.01.T01
Chr1 exon 81953797 81953964 81953797 ID=MsG0180004736.01.T01:exon:34554;Parent=MsG0180004736.01.T01
Chr1 exon 81954644 81954856 81954644 ID=MsG0180004736.01.T01:exon:34555;Parent=MsG0180004736.01.T01
Chr1 CDS 81951921 81952166 81951921 ID=MsG0180004736.01.T01:cds;Parent=MsG0180004736.01.T01
Chr1 CDS 81953797 81953964 81953797 ID=MsG0180004736.01.T01:cds;Parent=MsG0180004736.01.T01
Chr1 CDS 81954644 81954856 81954644 ID=MsG0180004736.01.T01:cds;Parent=MsG0180004736.01.T01
Gene Sequence

>MsG0180004736.01.T01

TTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTGGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGATTGGAGAGCAGAACTTGGCATTTGGGTTAAAATTTGATGCTAAAGGAGTTATAGATTGTTTTGAGAAAGAATTGGAGACTCTTCCATCTGGTATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGGATTTTCAGCTCTTCGAAGGAAAATGGTCTATTTTGCAGACTTTCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGAGAAATTAACACGACTCTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCGCCCGTTCGGCTGATAGAGGGTAGACTTTGCAATGAGATAAAAAAGAACCTTAAATCCGTAAGGGGTGAAGCTCAGAAAGCTACTGACAGAACTGTGAATGCAAATCAATTTGAATGA

Protein sequence

>MsG0180004736.01.T01

LVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIGNILTDYERLADFIPGLALSKLIQKGPNFARLLQIGEQNLAFGLKFDAKGVIDCFEKELETLPSGMKRDIDFKMIEGDFQLFEGKWSILQTFSDGSCEDSPVREINTTLSYIVDVKPKMWLPPVRLIEGRLCNEIKKNLKSVRGEAQKATDRTVNANQFE*