AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880170 MtrunA17_Chr4g0020051 97.222 360 9 1 1 360 1 359 0.0 714
Msa0880170 MtrunA17_Chr4g0041341 40.278 216 122 2 144 352 227 442 1.05e-40 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880170 AT3G63490.1 65.722 353 100 7 13 356 1 341 5.95e-158 447
Msa0880170 AT3G63490.2 59.259 297 97 8 13 300 1 282 2.18e-104 309
Msa0880170 AT2G42710.1 41.395 215 120 2 144 352 188 402 4.30e-50 173

Find 120 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTGATCATTATATTT+AGG 0.131759 6_1:+26532747 None:intergenic
TGCTAGCCTTGGGAAGATTC+TGG 0.185149 6_1:-26530215 Msa0880170:CDS
TATTGATTTAGTCGGCTTTA+TGG 0.225054 6_1:-26529631 Msa0880170:three_prime_UTR
CTTCTACTGTTTCTACAAAC+TGG 0.231611 6_1:+26532793 None:intergenic
TACATATACAGGGATGAATT+TGG 0.275025 6_1:-26529565 Msa0880170:three_prime_UTR
GGAATCGTTCACTTGCCTTT+TGG 0.287837 6_1:-26529938 Msa0880170:CDS
ACTGTTGATCATTATATTTA+GGG 0.290232 6_1:+26532748 None:intergenic
GGGAGAGAGGAAGAAGGTTC+TGG 0.298442 6_1:+26535380 None:intergenic
CTGAAACTATAGCCCGTTCT+TGG 0.303320 6_1:+26529294 None:intergenic
ATTGATTTAGTCGGCTTTAT+GGG 0.311429 6_1:-26529630 Msa0880170:three_prime_UTR
TTCATAATATTATCTATCTA+TGG 0.311835 6_1:-26529428 Msa0880170:three_prime_UTR
CTTGAAGACAGCAATTTCTT+TGG 0.313872 6_1:-26532835 Msa0880170:CDS
AGAAGAAGGAGAAAGGTCTT+GGG 0.330843 6_1:+26535416 None:intergenic
CATTACTTCTCAAGAGTGAT+AGG 0.340890 6_1:-26535173 Msa0880170:CDS
AAAACTTGCAGGAGCAGATT+TGG 0.343136 6_1:-26530996 Msa0880170:CDS
GGTCAATGTTGAGGCGGAAA+TGG 0.347628 6_1:+26532769 None:intergenic
GCTAGCCTTGGGAAGATTCT+GGG 0.350205 6_1:-26530214 Msa0880170:CDS
GCTGTTACAGTGCCAGCTTT+TGG 0.356409 6_1:+26530169 None:intergenic
CAGAATAGATCACTTGAATA+TGG 0.363358 6_1:-26529657 Msa0880170:exon
TTCGATGAAGCAAAACTTGC+AGG 0.364692 6_1:-26531007 Msa0880170:CDS
GAGAAGAAGGAGAAAGGTCT+TGG 0.368226 6_1:+26535415 None:intergenic
GGAGAGAGGAAGAAGGTTCT+GGG 0.370363 6_1:+26535381 None:intergenic
GTAAGTCTGCCGAAGGGAAC+TGG 0.379100 6_1:-26532611 Msa0880170:CDS
TACAAGGAAAATCCTCATCT+TGG 0.380572 6_1:+26529482 None:intergenic
AATGCAGCTTTCCCTTTCTT+AGG 0.383121 6_1:+26535192 None:intergenic
GGTGAGATCTAAGAGATTCT+TGG 0.384948 6_1:-26532895 Msa0880170:CDS
AGATAATATTATGAAATCTA+AGG 0.388876 6_1:+26529436 None:intergenic
CTATGTTGTGTGCACACTTT+TGG 0.391436 6_1:+26529514 None:intergenic
GGATTTGGCATGAGTCCTCT+TGG 0.392084 6_1:+26530190 None:intergenic
AACACCTTAGGCATCATATC+TGG 0.401176 6_1:+26530905 None:intergenic
GGCTATAGCAGAATTCAAAC+AGG 0.402560 6_1:-26529990 Msa0880170:CDS
GATCTGATAGAAGAGATAAA+AGG 0.407945 6_1:-26530962 Msa0880170:CDS
GTCACCAAGGTTACATATAC+AGG 0.412726 6_1:-26529576 Msa0880170:three_prime_UTR
GTTGTACATGAAGCCATGTT+TGG 0.414703 6_1:+26535495 None:intergenic
TGTTTCAGGTTGCTAGCCTT+GGG 0.425349 6_1:-26530225 Msa0880170:intron
CATACTAGTTCCCCTTGAAA+AGG 0.438137 6_1:+26529327 None:intergenic
AACAGGGAAAAGTTGAATAC+AGG 0.442667 6_1:-26529973 Msa0880170:CDS
CAGCAATGGGGCCTTCAGTC+AGG 0.443694 6_1:-26529717 Msa0880170:CDS
GCGCACATATGCTCAGCAAT+GGG 0.454736 6_1:-26529730 Msa0880170:CDS
AGAGATAAAAGGAGGATACA+TGG 0.455640 6_1:-26530951 Msa0880170:CDS
TTGTTTCAGGTTGCTAGCCT+TGG 0.461467 6_1:-26530226 Msa0880170:intron
TTCTACTGTTTCTACAAACT+GGG 0.463133 6_1:+26532794 None:intergenic
GTCAATGTTGAGGCGGAAAT+GGG 0.464039 6_1:+26532770 None:intergenic
TGTAGACCCGTGCCAAGAAC+GGG 0.465459 6_1:-26529306 Msa0880170:three_prime_UTR
ACAAGGAAAATCCTCATCTT+GGG 0.467492 6_1:+26529483 None:intergenic
GAATACAGGGCAGATAAAAC+AGG 0.473583 6_1:-26529959 Msa0880170:CDS
TATGGTTATATTGATTTAGT+CGG 0.475738 6_1:-26529639 Msa0880170:three_prime_UTR
TTCAGTCAGGTTAAATATCA+AGG 0.479582 6_1:-26529704 Msa0880170:CDS
GTTACTACTAAGCCTAAGAA+AGG 0.488925 6_1:-26535204 Msa0880170:CDS
AAGACCTAGACTGGTAGGTT+AGG 0.497972 6_1:+26535328 None:intergenic
GTGCACACAACATAGTCCTT+TGG 0.501143 6_1:-26529506 Msa0880170:three_prime_UTR
GAGAGTGTGGTGGTGAAAGC+AGG 0.504363 6_1:+26535521 None:intergenic
GGAAAAGAACGGAGAGAAGA+AGG 0.505919 6_1:+26535402 None:intergenic
GTTAGGTTAACCGACTTAGT+AGG 0.508509 6_1:+26535345 None:intergenic
GAAGAAGGAGAAAGGTCTTG+GGG 0.510778 6_1:+26535417 None:intergenic
TTGTACATGAAGCCATGTTT+GGG 0.512407 6_1:+26535496 None:intergenic
TGGTGAAAGCAGGACATTAG+AGG 0.518128 6_1:+26535531 None:intergenic
GTAGAGGCAAACAAACCATC+TGG 0.518230 6_1:-26529778 Msa0880170:CDS
GTTATCTATTCGTTTGCCGA+TGG 0.524222 6_1:+26535556 None:intergenic
TGCGCACATATGCTCAGCAA+TGG 0.525735 6_1:-26529731 Msa0880170:CDS
CTATAGCCCGTTCTTGGCAC+GGG 0.527454 6_1:+26529300 None:intergenic
TATACAGGGATGAATTTGGT+TGG 0.530059 6_1:-26529561 Msa0880170:three_prime_UTR
ACTTAGTAGGCTTCAAAACA+AGG 0.530096 6_1:+26535358 None:intergenic
ATACTAGTTCCCCTTGAAAA+GGG 0.532763 6_1:+26529328 None:intergenic
GTAAAATCGAAGACCTAGAC+TGG 0.533354 6_1:+26535319 None:intergenic
AAATCCTCATCTTGGGCCAA+AGG 0.535268 6_1:+26529490 None:intergenic
CTCATGCCAAATCCAAAAGC+TGG 0.536274 6_1:-26530181 Msa0880170:CDS
TATATTTAGGGTCAATGTTG+AGG 0.541178 6_1:+26532760 None:intergenic
CTGGTGCGAAAGGTGTGTAC+TGG 0.541250 6_1:-26529759 Msa0880170:CDS
AAGAAGGAGAAAGGTCTTGG+GGG 0.541318 6_1:+26535418 None:intergenic
TGTAACAGCTAATATTCCTC+AGG 0.545912 6_1:-26530155 Msa0880170:intron
CATCCCTGTATATGTAACCT+TGG 0.546222 6_1:+26529572 None:intergenic
TTAACCTAACCTACCAGTCT+AGG 0.550126 6_1:-26535332 Msa0880170:CDS
AACGGAGAGAAGAAGGAGAA+AGG 0.551129 6_1:+26535409 None:intergenic
CTGATAGAAGAGATAAAAGG+AGG 0.556066 6_1:-26530959 Msa0880170:CDS
CCACACTCTCTTCCCAAACA+TGG 0.557526 6_1:-26535508 Msa0880170:CDS
CTAGCCTTGGGAAGATTCTG+GGG 0.560309 6_1:-26530213 Msa0880170:CDS
ACTATAGCCCGTTCTTGGCA+CGG 0.563081 6_1:+26529299 None:intergenic
AAAATAGCCGTTCTTACTCA+AGG 0.563803 6_1:-26532578 Msa0880170:intron
AGCAGATTTGGTAGGTGGAG+AGG 0.564195 6_1:-26530984 Msa0880170:CDS
TACACACCTTTCGCACCAGA+TGG 0.564285 6_1:+26529763 None:intergenic
ATGTAGACCCGTGCCAAGAA+CGG 0.565981 6_1:-26529307 Msa0880170:three_prime_UTR
TTCTCCAGATATGATGCCTA+AGG 0.567948 6_1:-26530909 Msa0880170:intron
TAGTCCTTTGGCCCAAGATG+AGG 0.571677 6_1:-26529494 Msa0880170:three_prime_UTR
AACAAACCATCTGGTGCGAA+AGG 0.572574 6_1:-26529769 Msa0880170:CDS
GAGAAGGATGGTGTTGATGA+TGG 0.575832 6_1:-26535249 Msa0880170:CDS
GCTTCAAAACAAGGGGAGAG+AGG 0.576331 6_1:+26535367 None:intergenic
ATTACTTCTCAAGAGTGATA+GGG 0.582083 6_1:-26535172 Msa0880170:intron
ATAATCACCTTGAGTAAGAA+CGG 0.583105 6_1:+26532571 None:intergenic
TTGATATTTAACCTGACTGA+AGG 0.584092 6_1:+26529706 None:intergenic
TTACTACTAAGCCTAAGAAA+GGG 0.585009 6_1:-26535203 Msa0880170:CDS
GCAGGAGCAGATTTGGTAGG+TGG 0.594774 6_1:-26530989 Msa0880170:CDS
AACTGTTGATGAAGATGAGA+AGG 0.595375 6_1:-26535265 Msa0880170:CDS
CTTGCAGGAGCAGATTTGGT+AGG 0.596280 6_1:-26530992 Msa0880170:CDS
AACAAGGGGAGAGAGGAAGA+AGG 0.598366 6_1:+26535374 None:intergenic
GGGGTGAGAATAGAAGAAGA+GGG 0.598380 6_1:+26535438 None:intergenic
TTAATAGGTAAGTCTGCCGA+AGG 0.603199 6_1:-26532618 Msa0880170:intron
ACAGGGAAAAGTTGAATACA+GGG 0.604006 6_1:-26529972 Msa0880170:CDS
AATCGAAGACCTAGACTGGT+AGG 0.609515 6_1:+26535323 None:intergenic
GGGTGAGAATAGAAGAAGAG+GGG 0.614380 6_1:+26535439 None:intergenic
AGAAGGAGAAAGGTCTTGGG+GGG 0.616732 6_1:+26535419 None:intergenic
TACAAAGTAATAATAATACA+AGG 0.623495 6_1:+26529466 None:intergenic
GGGAAGATTCTGGGGCCAAG+AGG 0.625950 6_1:-26530205 Msa0880170:CDS
AGAAGGTTCTGGGAAAAGAA+CGG 0.632360 6_1:+26535391 None:intergenic
ATTTAGGGTCAATGTTGAGG+CGG 0.636560 6_1:+26532763 None:intergenic
CCATGTTTGGGAAGAGAGTG+TGG 0.639849 6_1:+26535508 None:intergenic
TAATTTGCAGAAATCAGTAG+AGG 0.640381 6_1:-26529794 Msa0880170:intron
TTAGTAGGCTTCAAAACAAG+GGG 0.645924 6_1:+26535360 None:intergenic
CTTAGTAGGCTTCAAAACAA+GGG 0.652023 6_1:+26535359 None:intergenic
TTGGCCCCAGAATCTTCCCA+AGG 0.652840 6_1:+26530209 None:intergenic
AGCAACATCAGCAGTGACAG+CGG 0.657412 6_1:+26535290 None:intergenic
GTTGATGAAGATGAGAAGGA+TGG 0.658305 6_1:-26535261 Msa0880170:CDS
TGTACTCATTGCAATTGATG+TGG 0.660685 6_1:-26529360 Msa0880170:three_prime_UTR
TCACCAAGGTTACATATACA+GGG 0.668132 6_1:-26529575 Msa0880170:three_prime_UTR
CGCACATATGCTCAGCAATG+GGG 0.673772 6_1:-26529729 Msa0880170:CDS
TAATAGGTAAGTCTGCCGAA+GGG 0.688585 6_1:-26532617 Msa0880170:intron
CTTGTCAAAAGATGTCACCA+AGG 0.694231 6_1:-26529589 Msa0880170:three_prime_UTR
TGAAAGCAGGACATTAGAGG+TGG 0.695588 6_1:+26535534 None:intergenic
GCTATAGCAGAATTCAAACA+GGG 0.697806 6_1:-26529989 Msa0880170:CDS
TGTTTGGGAAGAGAGTGTGG+TGG 0.778971 6_1:+26535511 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTCATAAAATATACA+TGG - chr6_1:26531588-26531607 Msa0880170:intron 10.0%
!! CAATTATTCATAAAATAAAT+GGG + chr6_1:26531945-26531964 None:intergenic 10.0%
!! ACAATTATTCATAAAATAAA+TGG + chr6_1:26531946-26531965 None:intergenic 10.0%
!! CAATACATATAATTAAAAAA+GGG + chr6_1:26533034-26533053 None:intergenic 10.0%
!! ACAATACATATAATTAAAAA+AGG + chr6_1:26533035-26533054 None:intergenic 10.0%
!! ATTAGATTGAATATTAAATT+GGG - chr6_1:26533528-26533547 Msa0880170:intron 10.0%
!!! TGAATTTTAATAACTACAAT+TGG - chr6_1:26529784-26529803 Msa0880170:CDS 15.0%
!!! GAATTTTAATAACTACAATT+GGG - chr6_1:26529785-26529804 Msa0880170:CDS 15.0%
!!! AATTTTAATAACTACAATTG+GGG - chr6_1:26529786-26529805 Msa0880170:CDS 15.0%
!! TGTATATTAGTAGAAAAATA+TGG + chr6_1:26530026-26530045 None:intergenic 15.0%
!! TAACAAATTATCTAGAAAAT+TGG + chr6_1:26530377-26530396 None:intergenic 15.0%
!!! TTCTAGATAATTTGTTAAAA+AGG - chr6_1:26530380-26530399 Msa0880170:intron 15.0%
!!! ATTATTGAATTTTTCATGTT+TGG - chr6_1:26531908-26531927 Msa0880170:intron 15.0%
!!! AAAAAACATTTTCTTGTAAA+GGG - chr6_1:26532388-26532407 Msa0880170:intron 15.0%
!! ACAATCATGTTAAAAATATA+TGG + chr6_1:26532849-26532868 None:intergenic 15.0%
!! AAAAAAAAATAGTTAGAATG+AGG - chr6_1:26533172-26533191 Msa0880170:intron 15.0%
!! TAAAATAAAAAAATACAGCA+AGG + chr6_1:26533345-26533364 None:intergenic 15.0%
!! GATTAGATTGAATATTAAAT+TGG - chr6_1:26533527-26533546 Msa0880170:intron 15.0%
!! TAAAGTTAAACAATATAAAG+TGG - chr6_1:26533594-26533613 Msa0880170:intron 15.0%
!! TGAAATTAAATTTATCAACT+TGG + chr6_1:26534169-26534188 None:intergenic 15.0%
!! ATAATTATGACTATAATCAA+CGG + chr6_1:26534428-26534447 None:intergenic 15.0%
!!! TTATTATTTTTCCTTCTTTT+GGG - chr6_1:26534491-26534510 Msa0880170:intron 15.0%
!!! TGTTTTTAGCATTTATTATT+TGG - chr6_1:26534604-26534623 Msa0880170:intron 15.0%
!!! TACATTTTGATAAAAAGAAA+AGG + chr6_1:26534837-26534856 None:intergenic 15.0%
!! TACAAAGTAATAATAATACA+AGG + chr6_1:26535419-26535438 None:intergenic 15.0%
!! AGATAATATTATGAAATCTA+AGG + chr6_1:26535449-26535468 None:intergenic 15.0%
!! TTCATAATATTATCTATCTA+TGG - chr6_1:26535454-26535473 Msa0880170:CDS 15.0%
!! AAATATGGTCAAAGTAAATT+AGG + chr6_1:26530011-26530030 None:intergenic 20.0%
!! TTGAATATCAATTTGTGAAT+TGG - chr6_1:26530345-26530364 Msa0880170:intron 20.0%
!! TTATATGGTTTAAAAAGATC+CGG - chr6_1:26530418-26530437 Msa0880170:intron 20.0%
!!! CAATCGATGTAAATATTTTA+CGG - chr6_1:26530793-26530812 Msa0880170:intron 20.0%
!! AAATTATTGCATATAATGGT+AGG + chr6_1:26531776-26531795 None:intergenic 20.0%
!! ACTGTTGATCATTATATTTA+GGG + chr6_1:26532137-26532156 None:intergenic 20.0%
!! AACTGTTGATCATTATATTT+AGG + chr6_1:26532138-26532157 None:intergenic 20.0%
!!! GAAAAAACATTTTCTTGTAA+AGG - chr6_1:26532387-26532406 Msa0880170:intron 20.0%
!! CAATTATGTAAACTCAATTA+TGG - chr6_1:26532433-26532452 Msa0880170:intron 20.0%
!!! TTAATATTTGTGCTGATAAA+AGG - chr6_1:26532770-26532789 Msa0880170:CDS 20.0%
!! TTAACATGATTGTAATTACT+AGG - chr6_1:26532856-26532875 Msa0880170:CDS 20.0%
!! AAATTAAAGGTAGATATTGT+AGG + chr6_1:26532943-26532962 None:intergenic 20.0%
!!! ACCTTTAATTTACTAACTAA+TGG - chr6_1:26532952-26532971 Msa0880170:intron 20.0%
!! ACCATTAGTTAGTAAATTAA+AGG + chr6_1:26532956-26532975 None:intergenic 20.0%
!! ATTCCAATTAACAAGTTATT+GGG + chr6_1:26533674-26533693 None:intergenic 20.0%
!! TATTCCAATTAACAAGTTAT+TGG + chr6_1:26533675-26533694 None:intergenic 20.0%
!!! TAACTTGTTAATTGGAATAT+TGG - chr6_1:26533676-26533695 Msa0880170:intron 20.0%
!!! TAATTTATAGTTCATTTTGC+AGG - chr6_1:26533845-26533864 Msa0880170:intron 20.0%
!!! GTTATTATTTTTCCTTCTTT+TGG - chr6_1:26534490-26534509 Msa0880170:intron 20.0%
!!! TATTATTTTTCCTTCTTTTG+GGG - chr6_1:26534492-26534511 Msa0880170:intron 20.0%
!! TTTAGCATTTATTATTTGGA+TGG - chr6_1:26534608-26534627 Msa0880170:intron 20.0%
!! TAAAAAGAATTATGCAATCA+TGG + chr6_1:26534870-26534889 None:intergenic 20.0%
!!! TATGGTTATATTGATTTAGT+CGG - chr6_1:26535243-26535262 Msa0880170:CDS 20.0%
!! ATTCATTTTCATATCACCAT+CGG - chr6_1:26529310-26529329 Msa0880170:three_prime_UTR 25.0%
! ATTAAGGGAATTAATTGTGT+TGG - chr6_1:26529850-26529869 Msa0880170:intron 25.0%
! TTAAGCTCAAAATTATGCAT+TGG - chr6_1:26530148-26530167 Msa0880170:intron 25.0%
! TAGAACTGAGTTATCTTATA+TGG - chr6_1:26530403-26530422 Msa0880170:intron 25.0%
! AATAGATAAGTCAATGAATC+CGG + chr6_1:26530440-26530459 None:intergenic 25.0%
!! TCTTTTGTCTTACTTTAAAC+TGG + chr6_1:26530540-26530559 None:intergenic 25.0%
! CGTAAAATATTTACATCGAT+TGG + chr6_1:26530795-26530814 None:intergenic 25.0%
!! GTTTTCACACAAATTATCTA+GGG - chr6_1:26530987-26531006 Msa0880170:CDS 25.0%
!!! TATTAGTTGATGCTACATTT+TGG - chr6_1:26531149-26531168 Msa0880170:intron 25.0%
! AAGATATAGTGAGAAATTGT+TGG - chr6_1:26531305-26531324 Msa0880170:intron 25.0%
!!! TATTTCAGTTTTTCAACAGA+TGG + chr6_1:26531434-26531453 None:intergenic 25.0%
! TGAAGGAAAAAAAAATTCAC+TGG - chr6_1:26531527-26531546 Msa0880170:intron 25.0%
! AAATTTCAGAAGATATTGGA+AGG + chr6_1:26531702-26531721 None:intergenic 25.0%
! TGCTAAATTTCAGAAGATAT+TGG + chr6_1:26531706-26531725 None:intergenic 25.0%
! AGCGAAATTATTGCATATAA+TGG + chr6_1:26531780-26531799 None:intergenic 25.0%
! TTATATGCAATAATTTCGCT+TGG - chr6_1:26531780-26531799 Msa0880170:intron 25.0%
! TGATCTTAGAAAGAAACAAA+TGG + chr6_1:26531874-26531893 None:intergenic 25.0%
! TCTTGGAAATTCAAAAATTG+AGG - chr6_1:26532004-26532023 Msa0880170:intron 25.0%
! CTTGGAAATTCAAAAATTGA+GGG - chr6_1:26532005-26532024 Msa0880170:intron 25.0%
! TATGTAAACTCAATTATGGA+TGG - chr6_1:26532437-26532456 Msa0880170:intron 25.0%
! AATAGTTAATACACAACCAT+AGG + chr6_1:26532710-26532729 None:intergenic 25.0%
! AGCACAAATATTAAGAAACT+CGG + chr6_1:26532764-26532783 None:intergenic 25.0%
!! TTTTCGATTTCAATTTTCGT+AGG + chr6_1:26532817-26532836 None:intergenic 25.0%
! ATCATAACAAATCAAGAGTT+TGG + chr6_1:26532917-26532936 None:intergenic 25.0%
!!! CTAACTTTAGAATGTAATGT+GGG + chr6_1:26532987-26533006 None:intergenic 25.0%
!!! ACTAACTTTAGAATGTAATG+TGG + chr6_1:26532988-26533007 None:intergenic 25.0%
! AAAAAATAGTTAGAATGAGG+AGG - chr6_1:26533175-26533194 Msa0880170:intron 25.0%
! GTTAAACAATATAAAGTGGA+CGG - chr6_1:26533598-26533617 Msa0880170:intron 25.0%
! TTAAACAATATAAAGTGGAC+GGG - chr6_1:26533599-26533618 Msa0880170:intron 25.0%
! TTAACTTATCTATGATGTCT+AGG + chr6_1:26533631-26533650 None:intergenic 25.0%
! AGACATCATAGATAAGTTAA+TGG - chr6_1:26533631-26533650 Msa0880170:intron 25.0%
! GACATCATAGATAAGTTAAT+GGG - chr6_1:26533632-26533651 Msa0880170:intron 25.0%
! TTCCAATTAACAAGTTATTG+GGG + chr6_1:26533673-26533692 None:intergenic 25.0%
! TTATTAAGCAGTGATTCAAT+TGG + chr6_1:26533788-26533807 None:intergenic 25.0%
! GAAGGAAAAATAATAACCTA+AGG + chr6_1:26534487-26534506 None:intergenic 25.0%
!!! ATTATTTTTCCTTCTTTTGG+GGG - chr6_1:26534493-26534512 Msa0880170:intron 25.0%
! AATGCTAAAAACAACATGAT+GGG + chr6_1:26534597-26534616 None:intergenic 25.0%
! AAATGCTAAAAACAACATGA+TGG + chr6_1:26534598-26534617 None:intergenic 25.0%
!! GATTGCATAATTCTTTTTAC+AGG - chr6_1:26534871-26534890 Msa0880170:intron 25.0%
! CAGATAGAAAATTCAATTTG+GGG + chr6_1:26535032-26535051 None:intergenic 25.0%
! GCAGATAGAAAATTCAATTT+GGG + chr6_1:26535033-26535052 None:intergenic 25.0%
! TGCAGATAGAAAATTCAATT+TGG + chr6_1:26535034-26535053 None:intergenic 25.0%
! TTTCTGCAAATTAGAACAAT+GGG + chr6_1:26535081-26535100 None:intergenic 25.0%
! ATTTCTGCAAATTAGAACAA+TGG + chr6_1:26535082-26535101 None:intergenic 25.0%
!! ACATCTTTTGACAAGATATT+TGG + chr6_1:26535288-26535307 None:intergenic 25.0%
! CTCACTATTAATAGCAAAAA+TGG + chr6_1:26535490-26535509 None:intergenic 25.0%
!!! CATTTTTGCTATTAATAGTG+AGG - chr6_1:26535488-26535507 Msa0880170:CDS 25.0%
TTACTACTAAGCCTAAGAAA+GGG - chr6_1:26529679-26529698 Msa0880170:CDS 30.0%
ATTACTTCTCAAGAGTGATA+GGG - chr6_1:26529710-26529729 Msa0880170:CDS 30.0%
TTCAAATGAGTCATCTATTG+CGG + chr6_1:26529973-26529992 None:intergenic 30.0%
CAATTTATCGTTCGTAATTG+TGG + chr6_1:26530321-26530340 None:intergenic 30.0%
CACAATTACGAACGATAAAT+TGG - chr6_1:26530319-26530338 Msa0880170:intron 30.0%
ATCCAAATTCAGTGACTTTA+AGG + chr6_1:26530517-26530536 None:intergenic 30.0%
TTCTTAGAACCAGTGAATTT+AGG - chr6_1:26530649-26530668 Msa0880170:intron 30.0%
AGTGAATTTAGGAAGATGAA+GGG - chr6_1:26530660-26530679 Msa0880170:intron 30.0%
ACTTGGAAAAATTGTTCTGA+AGG - chr6_1:26530703-26530722 Msa0880170:intron 30.0%
! ACGTGATTTTCAATTCTCTT+CGG + chr6_1:26530960-26530979 None:intergenic 30.0%
! GGTTTTCACACAAATTATCT+AGG - chr6_1:26530986-26531005 Msa0880170:CDS 30.0%
ACCAGTAATAGAACAATTTG+TGG + chr6_1:26531044-26531063 None:intergenic 30.0%
AAATTGTTCTATTACTGGTG+TGG - chr6_1:26531045-26531064 Msa0880170:intron 30.0%
AATTGTTCTATTACTGGTGT+GGG - chr6_1:26531046-26531065 Msa0880170:intron 30.0%
TAACGATTAACATCTCATGT+AGG - chr6_1:26531481-26531500 Msa0880170:intron 30.0%
AACGATTAACATCTCATGTA+GGG - chr6_1:26531482-26531501 Msa0880170:intron 30.0%
GGTTCACGTATTTATGTTAT+AGG - chr6_1:26531548-26531567 Msa0880170:intron 30.0%
!! CTAAGATCAAGTTGATTGTT+TGG - chr6_1:26531885-26531904 Msa0880170:intron 30.0%
!! TTCTACTGTTTCTACAAACT+GGG + chr6_1:26532091-26532110 None:intergenic 30.0%
! TATATTTAGGGTCAATGTTG+AGG + chr6_1:26532125-26532144 None:intergenic 30.0%
TTCATCCATCTTCTCTTAAT+AGG - chr6_1:26532249-26532268 Msa0880170:intron 30.0%
ACTTACCTATTAAGAGAAGA+TGG + chr6_1:26532257-26532276 None:intergenic 30.0%
!!! GTAAGAACGGCTATTTTTAT+GGG + chr6_1:26532301-26532320 None:intergenic 30.0%
!!! AGTAAGAACGGCTATTTTTA+TGG + chr6_1:26532302-26532321 None:intergenic 30.0%
ATAATCACCTTGAGTAAGAA+CGG + chr6_1:26532314-26532333 None:intergenic 30.0%
ATAACAAATCAAGAGTTTGG+AGG + chr6_1:26532914-26532933 None:intergenic 30.0%
TAGAACCTACTCAAAATTCA+AGG + chr6_1:26533141-26533160 None:intergenic 30.0%
! TGGAATTGGCATGTTATTTA+TGG - chr6_1:26533254-26533273 Msa0880170:intron 30.0%
TGATATTCCTCATCAAAACA+TGG - chr6_1:26533554-26533573 Msa0880170:intron 30.0%
ATCATAGATAAGTTAATGGG+TGG - chr6_1:26533635-26533654 Msa0880170:intron 30.0%
TTGTTAATTGGAATATTGGC+TGG - chr6_1:26533680-26533699 Msa0880170:intron 30.0%
TTCGCTTATCTTATTCCTAT+CGG + chr6_1:26533720-26533739 None:intergenic 30.0%
GTTGTACAAAGTAAAATGGT+AGG + chr6_1:26533757-26533776 None:intergenic 30.0%
! ACCATTTTACTTTGTACAAC+TGG - chr6_1:26533757-26533776 Msa0880170:intron 30.0%
! CCATTTTACTTTGTACAACT+GGG - chr6_1:26533758-26533777 Msa0880170:intron 30.0%
CTATTTATTGTGCATCTCTT+TGG - chr6_1:26533816-26533835 Msa0880170:intron 30.0%
GATCTGATAGAAGAGATAAA+AGG - chr6_1:26533920-26533939 Msa0880170:intron 30.0%
AAGATTCGAAAGTTAGTAAC+TGG - chr6_1:26534092-26534111 Msa0880170:intron 30.0%
ATTTATCCTCAACACACATT+AGG + chr6_1:26534143-26534162 None:intergenic 30.0%
GTTCTATGTTCATTCAAATC+AGG - chr6_1:26534200-26534219 Msa0880170:intron 30.0%
TTCATTCAAATCAGGTTCTT+TGG - chr6_1:26534208-26534227 Msa0880170:intron 30.0%
ATTGTCAATACAGTTTCCTT+AGG - chr6_1:26534468-26534487 Msa0880170:intron 30.0%
! AAGATCCTCTTCTGAAAAAT+CGG + chr6_1:26534975-26534994 None:intergenic 30.0%
! TAATTTGCAGAAATCAGTAG+AGG - chr6_1:26535088-26535107 Msa0880170:intron 30.0%
TTGATATTTAACCTGACTGA+AGG + chr6_1:26535179-26535198 None:intergenic 30.0%
TTCAGTCAGGTTAAATATCA+AGG - chr6_1:26535178-26535197 Msa0880170:CDS 30.0%
CAGAATAGATCACTTGAATA+TGG - chr6_1:26535225-26535244 Msa0880170:CDS 30.0%
!! TATTGATTTAGTCGGCTTTA+TGG - chr6_1:26535251-26535270 Msa0880170:CDS 30.0%
! ATTGATTTAGTCGGCTTTAT+GGG - chr6_1:26535252-26535271 Msa0880170:CDS 30.0%
TACATATACAGGGATGAATT+TGG - chr6_1:26535317-26535336 Msa0880170:CDS 30.0%
TTGTACATGAAGCCATGTTT+GGG + chr6_1:26529389-26529408 None:intergenic 35.0%
TTAGTAGGCTTCAAAACAAG+GGG + chr6_1:26529525-26529544 None:intergenic 35.0%
CTTAGTAGGCTTCAAAACAA+GGG + chr6_1:26529526-26529545 None:intergenic 35.0%
ACTTAGTAGGCTTCAAAACA+AGG + chr6_1:26529527-26529546 None:intergenic 35.0%
!!! TGTTTTGAAGCCTACTAAGT+CGG - chr6_1:26529527-26529546 Msa0880170:three_prime_UTR 35.0%
! AACTGTTGATGAAGATGAGA+AGG - chr6_1:26529617-26529636 Msa0880170:three_prime_UTR 35.0%
GTTACTACTAAGCCTAAGAA+AGG - chr6_1:26529678-26529697 Msa0880170:CDS 35.0%
CATTACTTCTCAAGAGTGAT+AGG - chr6_1:26529709-26529728 Msa0880170:CDS 35.0%
AATAACTACAATTGGGGTTC+TGG - chr6_1:26529792-26529811 Msa0880170:intron 35.0%
AAGGGAATTAATTGTGTTGG+TGG - chr6_1:26529853-26529872 Msa0880170:intron 35.0%
! AGGGAATTAATTGTGTTGGT+GGG - chr6_1:26529854-26529873 Msa0880170:intron 35.0%
TCAAATGAGTCATCTATTGC+GGG + chr6_1:26529972-26529991 None:intergenic 35.0%
GTCAACTGTGTCATGTATTA+TGG - chr6_1:26530184-26530203 Msa0880170:CDS 35.0%
CTGTGTCATGTATTATGGAA+CGG - chr6_1:26530189-26530208 Msa0880170:CDS 35.0%
!! AAATTCAGTGACTTTAAGGC+CGG + chr6_1:26530513-26530532 None:intergenic 35.0%
TATGACAGTAGAAGAGTCAA+AGG - chr6_1:26530571-26530590 Msa0880170:intron 35.0%
! ATCTCTTTTCCAATTGCGAT+CGG - chr6_1:26530606-26530625 Msa0880170:intron 35.0%
CTTCATCTTCCTAAATTCAC+TGG + chr6_1:26530661-26530680 None:intergenic 35.0%
CAGTGAATTTAGGAAGATGA+AGG - chr6_1:26530659-26530678 Msa0880170:intron 35.0%
GTGAATTTAGGAAGATGAAG+GGG - chr6_1:26530661-26530680 Msa0880170:intron 35.0%
! CGATGTAAATATTTTACGGC+AGG - chr6_1:26530797-26530816 Msa0880170:intron 35.0%
!! TACCAAGGATTGGTTACATT+GGG + chr6_1:26530909-26530928 None:intergenic 35.0%
TTTCAATTCTCTTCGGTATG+TGG + chr6_1:26530953-26530972 None:intergenic 35.0%
AATTGAAAATCACGTGACTG+TGG - chr6_1:26530965-26530984 Msa0880170:CDS 35.0%
GTAATAGAACAATTTGTGGC+CGG + chr6_1:26531040-26531059 None:intergenic 35.0%
GCCACAAATTGTTCTATTAC+TGG - chr6_1:26531040-26531059 Msa0880170:intron 35.0%
TCTAAAGATACCGAATCAGT+TGG + chr6_1:26531074-26531093 None:intergenic 35.0%
!! ACTGATTCGGTATCTTTAGA+TGG - chr6_1:26531074-26531093 Msa0880170:intron 35.0%
ACGATTAACATCTCATGTAG+GGG - chr6_1:26531483-26531502 Msa0880170:intron 35.0%
!!! TTCCTTCATCACCACTTTTT+AGG + chr6_1:26531515-26531534 None:intergenic 35.0%
TTATGTTATAGGAGCTTCAG+AGG - chr6_1:26531559-26531578 Msa0880170:intron 35.0%
TTATAGCCAGACTTTCTCTT+TGG - chr6_1:26531644-26531663 Msa0880170:intron 35.0%
! TCTGAAATTTAGCATGAGTG+AGG - chr6_1:26531712-26531731 Msa0880170:intron 35.0%
CTGAAATTTAGCATGAGTGA+GGG - chr6_1:26531713-26531732 Msa0880170:intron 35.0%
ATGCAATAATTTCGCTTGGT+TGG - chr6_1:26531784-26531803 Msa0880170:intron 35.0%
AAGTAGGCAATCAAATATGC+TGG + chr6_1:26531820-26531839 None:intergenic 35.0%
AGCATATTTGATTGCCTACT+TGG - chr6_1:26531819-26531838 Msa0880170:intron 35.0%
CTTGAAGACAGCAATTTCTT+TGG - chr6_1:26532047-26532066 Msa0880170:intron 35.0%
!! CTTCTACTGTTTCTACAAAC+TGG + chr6_1:26532092-26532111 None:intergenic 35.0%
AAAATAGCCGTTCTTACTCA+AGG - chr6_1:26532304-26532323 Msa0880170:intron 35.0%
TGTAAAGGGATGTGTATGAA+AGG - chr6_1:26532402-26532421 Msa0880170:intron 35.0%
AACTCAATTATGGATGGACA+TGG - chr6_1:26532443-26532462 Msa0880170:intron 35.0%
ACGATTATATATGCATGCAG+TGG + chr6_1:26532547-26532566 None:intergenic 35.0%
AAGTAGATGTACTTGGTTCA+TGG + chr6_1:26532620-26532639 None:intergenic 35.0%
! GAACCAAGTACATCTACTTT+TGG - chr6_1:26532621-26532640 Msa0880170:intron 35.0%
CTACCAAAAGTAGATGTACT+TGG + chr6_1:26532627-26532646 None:intergenic 35.0%
!! ATCTACTTTTGGTAGAGTGA+TGG - chr6_1:26532632-26532651 Msa0880170:intron 35.0%
!! TCTACTTTTGGTAGAGTGAT+GGG - chr6_1:26532633-26532652 Msa0880170:intron 35.0%
CATGATTGTAATTACTAGGC+TGG - chr6_1:26532860-26532879 Msa0880170:CDS 35.0%
! TGGTTCCAAACTCTTTTTGA+AGG - chr6_1:26532880-26532899 Msa0880170:CDS 35.0%
! GGTTCCAAACTCTTTTTGAA+GGG - chr6_1:26532881-26532900 Msa0880170:CDS 35.0%
!! AAGTTAGTTGCTCACTTTTG+AGG - chr6_1:26533000-26533019 Msa0880170:intron 35.0%
AATGAGGAGGCAAACTATTA+TGG - chr6_1:26533188-26533207 Msa0880170:intron 35.0%
! TTTTATCCCCAAGTCTATTG+TGG - chr6_1:26533234-26533253 Msa0880170:intron 35.0%
AAAATTATCCGCCAAAGAGA+AGG + chr6_1:26533389-26533408 None:intergenic 35.0%
! TTGAAAGTCTAGTTTGAGCT+TGG - chr6_1:26533467-26533486 Msa0880170:intron 35.0%
! TGAAAGTCTAGTTTGAGCTT+GGG - chr6_1:26533468-26533487 Msa0880170:intron 35.0%
!! CACCCCAATAACTTGTTAAT+TGG - chr6_1:26533668-26533687 Msa0880170:intron 35.0%
! GTTCTTAACAGTTTTCCGAT+AGG - chr6_1:26533702-26533721 Msa0880170:intron 35.0%
CCCAGTTGTACAAAGTAAAA+TGG + chr6_1:26533761-26533780 None:intergenic 35.0%
CTGATAGAAGAGATAAAAGG+AGG - chr6_1:26533923-26533942 Msa0880170:intron 35.0%
AGAGATAAAAGGAGGATACA+TGG - chr6_1:26533931-26533950 Msa0880170:intron 35.0%
AAGATATTGAGCAACACCTT+AGG + chr6_1:26533992-26534011 None:intergenic 35.0%
! AGGAGAACATGATTTGCAAA+TGG + chr6_1:26534123-26534142 None:intergenic 35.0%
GTTGCAGATTTCAGCTATAA+AGG + chr6_1:26534272-26534291 None:intergenic 35.0%
AATCAGTTGTTACTAGCATG+CGG - chr6_1:26534374-26534393 Msa0880170:intron 35.0%
TATTTGGATGGAAACTCAGT+TGG - chr6_1:26534620-26534639 Msa0880170:intron 35.0%
TGTAACAGCTAATATTCCTC+AGG - chr6_1:26534727-26534746 Msa0880170:intron 35.0%
GCTATAGCAGAATTCAAACA+GGG - chr6_1:26534893-26534912 Msa0880170:intron 35.0%
AACAGGGAAAAGTTGAATAC+AGG - chr6_1:26534909-26534928 Msa0880170:intron 35.0%
ACAGGGAAAAGTTGAATACA+GGG - chr6_1:26534910-26534929 Msa0880170:intron 35.0%
!! GAAAAATCGGCTTTTCCAAA+AGG + chr6_1:26534962-26534981 None:intergenic 35.0%
!! AAAAGCCGATTTTTCAGAAG+AGG - chr6_1:26534967-26534986 Msa0880170:intron 35.0%
TCACCAAGGTTACATATACA+GGG - chr6_1:26535307-26535326 Msa0880170:CDS 35.0%
TATACAGGGATGAATTTGGT+TGG - chr6_1:26535321-26535340 Msa0880170:CDS 35.0%
ACAAGGAAAATCCTCATCTT+GGG + chr6_1:26535402-26535421 None:intergenic 35.0%
TACAAGGAAAATCCTCATCT+TGG + chr6_1:26535403-26535422 None:intergenic 35.0%
TGTACTCATTGCAATTGATG+TGG - chr6_1:26535522-26535541 Msa0880170:CDS 35.0%
ATACTAGTTCCCCTTGAAAA+GGG + chr6_1:26535557-26535576 None:intergenic 35.0%
GTTATCTATTCGTTTGCCGA+TGG + chr6_1:26529329-26529348 None:intergenic 40.0%
GTTGTACATGAAGCCATGTT+TGG + chr6_1:26529390-26529409 None:intergenic 40.0%
AGAAGAAGGAGAAAGGTCTT+GGG + chr6_1:26529469-26529488 None:intergenic 40.0%
!! AGAAGGTTCTGGGAAAAGAA+CGG + chr6_1:26529494-26529513 None:intergenic 40.0%
! GTTAGGTTAACCGACTTAGT+AGG + chr6_1:26529540-26529559 None:intergenic 40.0%
TTAACCTAACCTACCAGTCT+AGG - chr6_1:26529550-26529569 Msa0880170:three_prime_UTR 40.0%
GTAAAATCGAAGACCTAGAC+TGG + chr6_1:26529566-26529585 None:intergenic 40.0%
! GTTGATGAAGATGAGAAGGA+TGG - chr6_1:26529621-26529640 Msa0880170:three_prime_UTR 40.0%
AATGCAGCTTTCCCTTTCTT+AGG + chr6_1:26529693-26529712 None:intergenic 40.0%
TGTCATGTATTATGGAACGG+AGG - chr6_1:26530192-26530211 Msa0880170:CDS 40.0%
GTCATGTATTATGGAACGGA+GGG - chr6_1:26530193-26530212 Msa0880170:CDS 40.0%
GTAAGTACACTGTCAAACAG+TGG - chr6_1:26530237-26530256 Msa0880170:intron 40.0%
TGTCAAACAGTGGTATGTGT+CGG - chr6_1:26530247-26530266 Msa0880170:intron 40.0%
! ACGTCGTCAATCAAAAGTGT+GGG - chr6_1:26530279-26530298 Msa0880170:intron 40.0%
CTGAAGTCACCTTGAATTAC+CGG - chr6_1:26530491-26530510 Msa0880170:intron 40.0%
!! ACTTTAAGGCCGGTAATTCA+AGG + chr6_1:26530503-26530522 None:intergenic 40.0%
GGCCTTAAAGTCACTGAATT+TGG - chr6_1:26530512-26530531 Msa0880170:intron 40.0%
! GGTTACATTGGGGGTATAAT+CGG + chr6_1:26530898-26530917 None:intergenic 40.0%
!! ACCAAGGATTGGTTACATTG+GGG + chr6_1:26530908-26530927 None:intergenic 40.0%
!! CTACCAAGGATTGGTTACAT+TGG + chr6_1:26530910-26530929 None:intergenic 40.0%
CAATGTAACCAATCCTTGGT+AGG - chr6_1:26530908-26530927 Msa0880170:intron 40.0%
ATTCTCTTCGGTATGTGGTA+CGG + chr6_1:26530948-26530967 None:intergenic 40.0%
! GATTCGGTATCTTTAGATGG+AGG - chr6_1:26531077-26531096 Msa0880170:intron 40.0%
GCTACAAGGTTAGGTATAAG+TGG + chr6_1:26531110-26531129 None:intergenic 40.0%
TAACCTTGTAGCTGTGTTGT+GGG - chr6_1:26531118-26531137 Msa0880170:intron 40.0%
! ACCTGAGAATTTTCACGTAC+AGG - chr6_1:26531220-26531239 Msa0880170:intron 40.0%
TCCTGTACGTGAAAATTCTC+AGG + chr6_1:26531224-26531243 None:intergenic 40.0%
CAGTAGCTAACGACTACAAA+TGG - chr6_1:26531338-26531357 Msa0880170:intron 40.0%
! TTTTGTGCTCACTGCTCATT+TGG - chr6_1:26531393-26531412 Msa0880170:intron 40.0%
! CTCCTAAAAAGTGGTGATGA+AGG - chr6_1:26531510-26531529 Msa0880170:intron 40.0%
TTTCCACCAAAGAGAAAGTC+TGG + chr6_1:26531653-26531672 None:intergenic 40.0%
ATTGCCTACTTGGATAGTGA+TGG - chr6_1:26531829-26531848 Msa0880170:intron 40.0%
TACACCATCACTATCCAAGT+AGG + chr6_1:26531836-26531855 None:intergenic 40.0%
TGTTATCACCATGTTTCACC+AGG - chr6_1:26531966-26531985 Msa0880170:intron 40.0%
AGAATCTCTTAGATCTCACC+TGG + chr6_1:26531987-26532006 None:intergenic 40.0%
GGTGAGATCTAAGAGATTCT+TGG - chr6_1:26531987-26532006 Msa0880170:intron 40.0%
! ATTTAGGGTCAATGTTGAGG+CGG + chr6_1:26532122-26532141 None:intergenic 40.0%
GAGAAGATGGATGAAAGACT+CGG + chr6_1:26532244-26532263 None:intergenic 40.0%
TTAATAGGTAAGTCTGCCGA+AGG - chr6_1:26532264-26532283 Msa0880170:intron 40.0%
TAATAGGTAAGTCTGCCGAA+GGG - chr6_1:26532265-26532284 Msa0880170:intron 40.0%
GGACATGGACATAAGATGAT+AGG - chr6_1:26532458-26532477 Msa0880170:intron 40.0%
! ATAGGTCTTTTCTCCTGAAG+TGG - chr6_1:26532476-26532495 Msa0880170:intron 40.0%
CTTCGTGTGTGGATAACTAT+GGG - chr6_1:26532672-26532691 Msa0880170:intron 40.0%
ACTCGGTTGTTATGCACAAA+TGG + chr6_1:26532747-26532766 None:intergenic 40.0%
CTTGCCCTTCAAAAAGAGTT+TGG + chr6_1:26532888-26532907 None:intergenic 40.0%
!! CAAACTCTTTTTGAAGGGCA+AGG - chr6_1:26532886-26532905 Msa0880170:CDS 40.0%
!! ACGCACCTTGAATTTTGAGT+AGG - chr6_1:26533133-26533152 Msa0880170:intron 40.0%
AGGAGGCAAACTATTATGGA+GGG - chr6_1:26533192-26533211 Msa0880170:intron 40.0%
CCAATTCCACAATAGACTTG+GGG + chr6_1:26533243-26533262 None:intergenic 40.0%
GCCAATTCCACAATAGACTT+GGG + chr6_1:26533244-26533263 None:intergenic 40.0%
TGCCAATTCCACAATAGACT+TGG + chr6_1:26533245-26533264 None:intergenic 40.0%
GTCCTTAAATGCCAAGTAAC+TGG - chr6_1:26533315-26533334 Msa0880170:intron 40.0%
GTCCAGTTACTTGGCATTTA+AGG + chr6_1:26533320-26533339 None:intergenic 40.0%
AGAGAAGGATCAAAGGAACA+GGG + chr6_1:26533374-26533393 None:intergenic 40.0%
AAGAGAAGGATCAAAGGAAC+AGG + chr6_1:26533375-26533394 None:intergenic 40.0%
GTTCCTTTGATCCTTCTCTT+TGG - chr6_1:26533375-26533394 Msa0880170:intron 40.0%
AAAACATGGACGATGGTTGA+TGG - chr6_1:26533568-26533587 Msa0880170:intron 40.0%
TTCGATGAAGCAAAACTTGC+AGG - chr6_1:26533875-26533894 Msa0880170:intron 40.0%
AAAACTTGCAGGAGCAGATT+TGG - chr6_1:26533886-26533905 Msa0880170:intron 40.0%
TTCTCCAGATATGATGCCTA+AGG - chr6_1:26533973-26533992 Msa0880170:intron 40.0%
AACACCTTAGGCATCATATC+TGG + chr6_1:26533980-26533999 None:intergenic 40.0%
TGTTCTCCTAATGTGTGTTG+AGG - chr6_1:26534134-26534153 Msa0880170:intron 40.0%
TGATGCTATGCTCAGATTCA+TGG - chr6_1:26534309-26534328 Msa0880170:intron 40.0%
ATACAGGGACCAATGAGTTA+TGG - chr6_1:26534570-26534589 Msa0880170:intron 40.0%
TACAGGGACCAATGAGTTAT+GGG - chr6_1:26534571-26534590 Msa0880170:intron 40.0%
TTGCCATCGATGATTGTTTC+AGG - chr6_1:26534643-26534662 Msa0880170:intron 40.0%
CAACCTGAAACAATCATCGA+TGG + chr6_1:26534649-26534668 None:intergenic 40.0%
ACACACACATACACATAGAG+AGG - chr6_1:26534810-26534829 Msa0880170:intron 40.0%
GGCTATAGCAGAATTCAAAC+AGG - chr6_1:26534892-26534911 Msa0880170:intron 40.0%
GAATACAGGGCAGATAAAAC+AGG - chr6_1:26534923-26534942 Msa0880170:intron 40.0%
CTTGTCAAAAGATGTCACCA+AGG - chr6_1:26535293-26535312 Msa0880170:CDS 40.0%
GTCACCAAGGTTACATATAC+AGG - chr6_1:26535306-26535325 Msa0880170:CDS 40.0%
CATCCCTGTATATGTAACCT+TGG + chr6_1:26535313-26535332 None:intergenic 40.0%
! CTATGTTGTGTGCACACTTT+TGG + chr6_1:26535371-26535390 None:intergenic 40.0%
! GCGCAATATACCCTTTTCAA+GGG - chr6_1:26535544-26535563 Msa0880170:exon 40.0%
!! CGCAATATACCCTTTTCAAG+GGG - chr6_1:26535545-26535564 Msa0880170:exon 40.0%
CATACTAGTTCCCCTTGAAA+AGG + chr6_1:26535558-26535577 None:intergenic 40.0%
TGAAAGCAGGACATTAGAGG+TGG + chr6_1:26529351-26529370 None:intergenic 45.0%
TGGTGAAAGCAGGACATTAG+AGG + chr6_1:26529354-26529373 None:intergenic 45.0%
GGGTGAGAATAGAAGAAGAG+GGG + chr6_1:26529446-26529465 None:intergenic 45.0%
GGGGTGAGAATAGAAGAAGA+GGG + chr6_1:26529447-26529466 None:intergenic 45.0%
AAGAAGGAGAAAGGTCTTGG+GGG + chr6_1:26529467-26529486 None:intergenic 45.0%
GAAGAAGGAGAAAGGTCTTG+GGG + chr6_1:26529468-26529487 None:intergenic 45.0%
GAGAAGAAGGAGAAAGGTCT+TGG + chr6_1:26529470-26529489 None:intergenic 45.0%
AACGGAGAGAAGAAGGAGAA+AGG + chr6_1:26529476-26529495 None:intergenic 45.0%
GGAAAAGAACGGAGAGAAGA+AGG + chr6_1:26529483-26529502 None:intergenic 45.0%
AAGACCTAGACTGGTAGGTT+AGG + chr6_1:26529557-26529576 None:intergenic 45.0%
AATCGAAGACCTAGACTGGT+AGG + chr6_1:26529562-26529581 None:intergenic 45.0%
!! GAGAAGGATGGTGTTGATGA+TGG - chr6_1:26529633-26529652 Msa0880170:three_prime_UTR 45.0%
!! CAATTGGGGTTCTGGTTTCA+TGG - chr6_1:26529800-26529819 Msa0880170:intron 45.0%
GTTCGCGACTATGCTTCATA+TGG + chr6_1:26529885-26529904 None:intergenic 45.0%
ATGAGTCATCTATTGCGGGA+CGG + chr6_1:26529968-26529987 None:intergenic 45.0%
! ATGCATTGGCATGCGTAATG+AGG - chr6_1:26530162-26530181 Msa0880170:CDS 45.0%
CACGTCGTCAATCAAAAGTG+TGG - chr6_1:26530278-26530297 Msa0880170:intron 45.0%
TTTCCAATTGCGATCGGAAG+TGG - chr6_1:26530612-26530631 Msa0880170:intron 45.0%
ATTCCACTTCCGATCGCAAT+TGG + chr6_1:26530618-26530637 None:intergenic 45.0%
!! CCAAGGATTGGTTACATTGG+GGG + chr6_1:26530907-26530926 None:intergenic 45.0%
TTCTCTTCGGTATGTGGTAC+GGG + chr6_1:26530947-26530966 None:intergenic 45.0%
CACAACACAGCTACAAGGTT+AGG + chr6_1:26531119-26531138 None:intergenic 45.0%
CTAACCTTGTAGCTGTGTTG+TGG - chr6_1:26531117-26531136 Msa0880170:intron 45.0%
ATACCCACAACACAGCTACA+AGG + chr6_1:26531124-26531143 None:intergenic 45.0%
GTAGTCGTTAGCTACTGAAG+AGG + chr6_1:26531335-26531354 None:intergenic 45.0%
AGGGGAGAACTCCTAAAAAG+TGG - chr6_1:26531501-26531520 Msa0880170:intron 45.0%
TAGCCAGACTTTCTCTTTGG+TGG - chr6_1:26531647-26531666 Msa0880170:intron 45.0%
AGATCTCACCTGGTGAAACA+TGG + chr6_1:26531977-26531996 None:intergenic 45.0%
GTCAATGTTGAGGCGGAAAT+GGG + chr6_1:26532115-26532134 None:intergenic 45.0%
ACTAGAATCAAGCGAAGAGC+AGG + chr6_1:26532179-26532198 None:intergenic 45.0%
! ATGGGTTTTCCAGTTCCCTT+CGG + chr6_1:26532283-26532302 None:intergenic 45.0%
AACGCAATGTCTACCACTTC+AGG + chr6_1:26532492-26532511 None:intergenic 45.0%
!! TTGTCCTGGCATTGACATAG+AGG - chr6_1:26532510-26532529 Msa0880170:intron 45.0%
!! TTTGGTAGAGTGATGGGTCA+CGG - chr6_1:26532639-26532658 Msa0880170:intron 45.0%
GAATTGAACTGCTTCGTGTG+TGG - chr6_1:26532661-26532680 Msa0880170:intron 45.0%
GCTTCGTGTGTGGATAACTA+TGG - chr6_1:26532671-26532690 Msa0880170:intron 45.0%
! TGGGTTCATTGAGTTGCCTA+TGG - chr6_1:26532691-26532710 Msa0880170:intron 45.0%
GAGGAGGCAAACTATTATGG+AGG - chr6_1:26533191-26533210 Msa0880170:intron 45.0%
GCAAACTATTATGGAGGGTG+AGG - chr6_1:26533197-26533216 Msa0880170:intron 45.0%
CCCCAAGTCTATTGTGGAAT+TGG - chr6_1:26533240-26533259 Msa0880170:intron 45.0%
CCTTTGATCCTTCTCTTTGG+CGG - chr6_1:26533378-26533397 Msa0880170:intron 45.0%
!!! CCATCGTCCATGTTTTGATG+AGG + chr6_1:26533564-26533583 None:intergenic 45.0%
CCTCATCAAAACATGGACGA+TGG - chr6_1:26533561-26533580 Msa0880170:intron 45.0%
! ATGCTTAGTCTTCGCTTGCA+TGG - chr6_1:26534246-26534265 Msa0880170:intron 45.0%
! GAGCATAGCATCAAGTATCG+TGG + chr6_1:26534302-26534321 None:intergenic 45.0%
ACAGAGAATCCCCCAAAAGA+AGG + chr6_1:26534505-26534524 None:intergenic 45.0%
!! ATGATGGGCCCATAACTCAT+TGG + chr6_1:26534582-26534601 None:intergenic 45.0%
!! TTGTTTCAGGTTGCTAGCCT+TGG - chr6_1:26534656-26534675 Msa0880170:intron 45.0%
!! TGTTTCAGGTTGCTAGCCTT+GGG - chr6_1:26534657-26534676 Msa0880170:intron 45.0%
CTCATGCCAAATCCAAAAGC+TGG - chr6_1:26534701-26534720 Msa0880170:intron 45.0%
! ACAGTGCCAGCTTTTGGATT+TGG + chr6_1:26534710-26534729 None:intergenic 45.0%
AGTAGTTGATTGTGCACCTG+AGG + chr6_1:26534746-26534765 None:intergenic 45.0%
! GGAATCGTTCACTTGCCTTT+TGG - chr6_1:26534944-26534963 Msa0880170:intron 45.0%
GTAGAGGCAAACAAACCATC+TGG - chr6_1:26535104-26535123 Msa0880170:intron 45.0%
AACAAACCATCTGGTGCGAA+AGG - chr6_1:26535113-26535132 Msa0880170:intron 45.0%
GTGCACACAACATAGTCCTT+TGG - chr6_1:26535376-26535395 Msa0880170:CDS 45.0%
AAATCCTCATCTTGGGCCAA+AGG + chr6_1:26535395-26535414 None:intergenic 45.0%
! GGCGCAATATACCCTTTTCA+AGG - chr6_1:26535543-26535562 Msa0880170:exon 45.0%
CTGAAACTATAGCCCGTTCT+TGG + chr6_1:26535591-26535610 None:intergenic 45.0%
!! ATTATTAGTATTTATTATTA+AGG - chr6_1:26529834-26529853 Msa0880170:intron 5.0%
!! TTATTAGTATTTATTATTAA+GGG - chr6_1:26529835-26529854 Msa0880170:intron 5.0%
! TGTTTGGGAAGAGAGTGTGG+TGG + chr6_1:26529374-26529393 None:intergenic 50.0%
CCATGTTTGGGAAGAGAGTG+TGG + chr6_1:26529377-26529396 None:intergenic 50.0%
CCACACTCTCTTCCCAAACA+TGG - chr6_1:26529374-26529393 Msa0880170:three_prime_UTR 50.0%
GGGGGTGAGAATAGAAGAAG+AGG + chr6_1:26529448-26529467 None:intergenic 50.0%
AGAAGGAGAAAGGTCTTGGG+GGG + chr6_1:26529466-26529485 None:intergenic 50.0%
GGAGAGAGGAAGAAGGTTCT+GGG + chr6_1:26529504-26529523 None:intergenic 50.0%
AACAAGGGGAGAGAGGAAGA+AGG + chr6_1:26529511-26529530 None:intergenic 50.0%
GCTTCAAAACAAGGGGAGAG+AGG + chr6_1:26529518-26529537 None:intergenic 50.0%
AGCAACATCAGCAGTGACAG+CGG + chr6_1:26529595-26529614 None:intergenic 50.0%
GCGATCGGAAGTGGAATGAT+TGG - chr6_1:26530621-26530640 Msa0880170:intron 50.0%
CCCCCAATGTAACCAATCCT+TGG - chr6_1:26530904-26530923 Msa0880170:intron 50.0%
TATACGGTTGCTGCCTACCA+AGG + chr6_1:26530924-26530943 None:intergenic 50.0%
CGGTATGTGGTACGGGTATA+CGG + chr6_1:26530940-26530959 None:intergenic 50.0%
TGTGTTCAGCCAAGAGGTGA+GGG - chr6_1:26531010-26531029 Msa0880170:CDS 50.0%
GGTGTGGGTACCAACTGATT+CGG - chr6_1:26531061-26531080 Msa0880170:intron 50.0%
GGTCAATGTTGAGGCGGAAA+TGG + chr6_1:26532116-26532135 None:intergenic 50.0%
TGGTAGACATTGCGTTGTCC+TGG - chr6_1:26532496-26532515 Msa0880170:intron 50.0%
ACGTCCTCTATGTCAATGCC+AGG + chr6_1:26532517-26532536 None:intergenic 50.0%
AGCAAGGCTGTCCAGTTACT+TGG + chr6_1:26533329-26533348 None:intergenic 50.0%
CCGCCAAAGAGAAGGATCAA+AGG + chr6_1:26533381-26533400 None:intergenic 50.0%
! CTTGCAGGAGCAGATTTGGT+AGG - chr6_1:26533890-26533909 Msa0880170:intron 50.0%
! AGCAGATTTGGTAGGTGGAG+AGG - chr6_1:26533898-26533917 Msa0880170:intron 50.0%
ACATCAGAGCGTGACGATAC+AGG - chr6_1:26534554-26534573 Msa0880170:intron 50.0%
CATCAGAGCGTGACGATACA+GGG - chr6_1:26534555-26534574 Msa0880170:intron 50.0%
!! TGCTAGCCTTGGGAAGATTC+TGG - chr6_1:26534667-26534686 Msa0880170:intron 50.0%
!! GCTAGCCTTGGGAAGATTCT+GGG - chr6_1:26534668-26534687 Msa0880170:intron 50.0%
!! CTAGCCTTGGGAAGATTCTG+GGG - chr6_1:26534669-26534688 Msa0880170:intron 50.0%
GGATTTGGCATGAGTCCTCT+TGG + chr6_1:26534695-26534714 None:intergenic 50.0%
! GCTGTTACAGTGCCAGCTTT+TGG + chr6_1:26534716-26534735 None:intergenic 50.0%
TACACACCTTTCGCACCAGA+TGG + chr6_1:26535122-26535141 None:intergenic 50.0%
TGCGCACATATGCTCAGCAA+TGG - chr6_1:26535151-26535170 Msa0880170:intron 50.0%
GCGCACATATGCTCAGCAAT+GGG - chr6_1:26535152-26535171 Msa0880170:intron 50.0%
CGCACATATGCTCAGCAATG+GGG - chr6_1:26535153-26535172 Msa0880170:intron 50.0%
TAGTCCTTTGGCCCAAGATG+AGG - chr6_1:26535388-26535407 Msa0880170:CDS 50.0%
ATGTAGACCCGTGCCAAGAA+CGG - chr6_1:26535575-26535594 Msa0880170:five_prime_UTR 50.0%
ACTATAGCCCGTTCTTGGCA+CGG + chr6_1:26535586-26535605 None:intergenic 50.0%
! GAGAGTGTGGTGGTGAAAGC+AGG + chr6_1:26529364-26529383 None:intergenic 55.0%
GGGAGAGAGGAAGAAGGTTC+TGG + chr6_1:26529505-26529524 None:intergenic 55.0%
GTCATCTATTGCGGGACGGA+GGG + chr6_1:26529964-26529983 None:intergenic 55.0%
AGTCATCTATTGCGGGACGG+AGG + chr6_1:26529965-26529984 None:intergenic 55.0%
GAAGGGGTTCATCGTTCACG+CGG - chr6_1:26530677-26530696 Msa0880170:intron 55.0%
AAGGGGTTCATCGTTCACGC+GGG - chr6_1:26530678-26530697 Msa0880170:intron 55.0%
GGTTGCTGCCTACCAAGGAT+TGG + chr6_1:26530919-26530938 None:intergenic 55.0%
CTAGGGTGTGTTCAGCCAAG+AGG - chr6_1:26531004-26531023 Msa0880170:CDS 55.0%
GTGTGTTCAGCCAAGAGGTG+AGG - chr6_1:26531009-26531028 Msa0880170:CDS 55.0%
GTAAGTCTGCCGAAGGGAAC+TGG - chr6_1:26532271-26532290 Msa0880170:intron 55.0%
! GCAGGAGCAGATTTGGTAGG+TGG - chr6_1:26533893-26533912 Msa0880170:intron 55.0%
TTGGCCCCAGAATCTTCCCA+AGG + chr6_1:26534676-26534695 None:intergenic 55.0%
! CTGGTGCGAAAGGTGTGTAC+TGG - chr6_1:26535123-26535142 Msa0880170:intron 55.0%
TGTAGACCCGTGCCAAGAAC+GGG - chr6_1:26535576-26535595 Msa0880170:five_prime_UTR 55.0%
CTATAGCCCGTTCTTGGCAC+GGG + chr6_1:26535585-26535604 None:intergenic 55.0%
CATCGTTCACGCGGGAGACT+TGG - chr6_1:26530686-26530705 Msa0880170:intron 60.0%
GCCAAGAGGTGAGGGAACTC+CGG - chr6_1:26531018-26531037 Msa0880170:CDS 60.0%
!! GGGAAGATTCTGGGGCCAAG+AGG - chr6_1:26534677-26534696 Msa0880170:intron 60.0%
CAGCAATGGGGCCTTCAGTC+AGG - chr6_1:26535165-26535184 Msa0880170:intron 60.0%
GCCGGAGTTCCCTCACCTCT+TGG + chr6_1:26531022-26531041 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26529293 26535611 26529293 ID=Msa0880170;Name=Msa0880170
chr6_1 mRNA 26529293 26535611 26529293 ID=Msa0880170-mRNA-1;Parent=Msa0880170;Name=Msa0880170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|7|379|360
chr6_1 exon 26529293 26529806 26529293 ID=Msa0880170-mRNA-1:exon:6448;Parent=Msa0880170-mRNA-1
chr6_1 exon 26529886 26530011 26529886 ID=Msa0880170-mRNA-1:exon:6447;Parent=Msa0880170-mRNA-1
chr6_1 exon 26530156 26530239 26530156 ID=Msa0880170-mRNA-1:exon:6446;Parent=Msa0880170-mRNA-1
chr6_1 exon 26530910 26531037 26530910 ID=Msa0880170-mRNA-1:exon:6445;Parent=Msa0880170-mRNA-1
chr6_1 exon 26532579 26532633 26532579 ID=Msa0880170-mRNA-1:exon:6444;Parent=Msa0880170-mRNA-1
chr6_1 exon 26532737 26532916 26532737 ID=Msa0880170-mRNA-1:exon:6443;Parent=Msa0880170-mRNA-1
chr6_1 exon 26535173 26535611 26535173 ID=Msa0880170-mRNA-1:exon:6442;Parent=Msa0880170-mRNA-1
chr6_1 five_prime_UTR 26535548 26535611 26535548 ID=Msa0880170-mRNA-1:five_prime_utr;Parent=Msa0880170-mRNA-1
chr6_1 CDS 26535173 26535547 26535173 ID=Msa0880170-mRNA-1:cds;Parent=Msa0880170-mRNA-1
chr6_1 CDS 26532737 26532916 26532737 ID=Msa0880170-mRNA-1:cds;Parent=Msa0880170-mRNA-1
chr6_1 CDS 26532579 26532633 26532579 ID=Msa0880170-mRNA-1:cds;Parent=Msa0880170-mRNA-1
chr6_1 CDS 26530910 26531037 26530910 ID=Msa0880170-mRNA-1:cds;Parent=Msa0880170-mRNA-1
chr6_1 CDS 26530156 26530239 26530156 ID=Msa0880170-mRNA-1:cds;Parent=Msa0880170-mRNA-1
chr6_1 CDS 26529886 26530011 26529886 ID=Msa0880170-mRNA-1:cds;Parent=Msa0880170-mRNA-1
chr6_1 CDS 26529672 26529806 26529672 ID=Msa0880170-mRNA-1:cds;Parent=Msa0880170-mRNA-1
chr6_1 three_prime_UTR 26529293 26529671 26529293 ID=Msa0880170-mRNA-1:three_prime_utr;Parent=Msa0880170-mRNA-1
Gene Sequence

>Msa0880170

ATGTCCTGCTTTCACCACCACACTCTCTTCCCAAACATGGCTTCATGTACAACAACAACTTCATCATCTTCTCTTATGCTAACACACCCCTCTTCTTCTATTCTCACCCCCCAAGACCTTTCTCCTTCTTCTCTCCGTTCTTTTCCCAGAACCTTCTTCCTCTCTCCCCTTGTTTTGAAGCCTACTAAGTCGGTTAACCTAACCTACCAGTCTAGGTCTTCGATTTTACTTGCTTCCGCTGTCACTGCTGATGTTGCTGAAACTGTTGATGAAGATGAGAAGGATGGTGTTGATGATGGTGTTGCTGAAACTGTGACTGTTGTTACTACTAAGCCTAAGAAAGGGAAAGCTGCATTACTTCTCAAGAGTGATAGGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGTTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCCAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCTACAGTAAGTCTGCCGAAGGGAACTGGAAAACCCATAAAAATAGCCGTTCTTACTCAAGGTGAAAAGTTCGATGAAGCAAAACTTGCAGGAGCAGATTTGGTAGGTGGAGAGGATCTGATAGAAGAGATAAAAGGAGGATACATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTTGGGAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTCCTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTTCACTTGCCTTTTGGAAAAGCCGATTTTTCAGAAGAGGATCTTCTTACAAACTTGCTCTCTGCAATAAAATCAGTAGAGGCAAACAAACCATCTGGTGCGAAAGGTGTGTACTGGAAAAGTGCGCACATATGCTCAGCAATGGGGCCTTCAGTCAGGTTAAATATCAAGGAGATGCTTGATTACAGACTTCAATCAGAATAG

Protein sequence

>Msa0880170

MSCFHHHTLFPNMASCTTTTSSSSLMLTHPSSSILTPQDLSPSSLRSFPRTFFLSPLVLKPTKSVNLTYQSRSSILLASAVTADVAETVDEDEKDGVDDGVAETVTVVTTKPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTQFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEEIKGGYMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE*