AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018010 MtrunA17_Chr1g0152491 89.583 192 18 2 2 193 1 190 1.93e-124 349
Msa0018010 MtrunA17_Chr7g0245211 40.940 149 75 2 47 185 97 242 1.16e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018010 AT1G26220.1 60.104 193 62 4 2 185 1 187 2.96e-75 225
Msa0018010 AT1G32070.3 40.476 126 59 1 76 185 127 252 1.44e-25 100
Msa0018010 AT1G32070.1 40.157 127 59 1 76 185 126 252 4.68e-25 98.6
Msa0018010 AT1G32070.2 40.157 127 59 1 76 185 127 253 4.78e-25 98.6

Find 93 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTAATTTCTTTAAAA+TGG 0.130939 1_1:-30097176 Msa0018010:three_prime_UTR
CTCCACTTATTCACGTTAAA+AGG 0.160301 1_1:-30097231 Msa0018010:three_prime_UTR
ATACTTTGTTAAGTGCTTCT+AGG 0.216082 1_1:+30099563 None:intergenic
GAGAGAGTAGACTCTGAAAA+AGG 0.218002 1_1:+30097542 None:intergenic
TACTCTGAGCCAAGAGTTCT+TGG 0.233326 1_1:-30099277 Msa0018010:CDS
AGAGTCTACTCTCTCTAGTT+TGG 0.277038 1_1:-30097534 Msa0018010:three_prime_UTR
CAAGAGGAATTTGAGAAATC+TGG 0.296177 1_1:-30098776 Msa0018010:CDS
AACAACAACATCCCATATTA+TGG 0.310068 1_1:+30099393 None:intergenic
TTGTCCCGAAGATGATTTAC+AGG 0.328544 1_1:-30097779 Msa0018010:three_prime_UTR
GTTGTTGATCCTTCGTTTCA+AGG 0.353170 1_1:-30099376 Msa0018010:CDS
AAAGGTGAGATTTCAATCAT+TGG 0.360168 1_1:-30097213 Msa0018010:three_prime_UTR
CTCAGAGTAAAGAGCAATAT+TGG 0.361910 1_1:+30099291 None:intergenic
GATCCTTCGTTTCAAGGGCT+TGG 0.366151 1_1:-30099370 Msa0018010:CDS
TTCATCCAGAGATGTGCTTT+TGG 0.368218 1_1:-30097503 Msa0018010:three_prime_UTR
AAGTTCCTGTAAATCATCTT+CGG 0.390419 1_1:+30097774 None:intergenic
GAAATCTGGGCACATCAAAA+AGG 0.398298 1_1:-30098762 Msa0018010:CDS
TCGTTTCAAGGGCTTGGACT+AGG 0.403696 1_1:-30099364 Msa0018010:CDS
CTGTTGTCGAGAGGCTTATG+AGG 0.408843 1_1:-30099336 Msa0018010:CDS
AAACACTCTCTCACCATAGA+AGG 0.415331 1_1:-30097568 Msa0018010:three_prime_UTR
CAAGCTGCAAACTCAAATAA+TGG 0.416111 1_1:-30098729 Msa0018010:exon
AAGTTAAGTCGTAGGGAGGA+TGG 0.419412 1_1:+30099721 None:intergenic
CGTTTCAAGGGCTTGGACTA+GGG 0.426846 1_1:-30099363 Msa0018010:CDS
CGATAAAAGCCAAGAACTCT+TGG 0.431331 1_1:+30099268 None:intergenic
AAAGATAATCCATTCCCAAT+AGG 0.439989 1_1:+30097410 None:intergenic
AATGGAGAGGAATGAGTTGC+GGG 0.440763 1_1:-30097633 Msa0018010:three_prime_UTR
TAGGCTTGCTTGACAAGAAA+TGG 0.442809 1_1:+30099663 None:intergenic
GAGATTGTATTATATATGTA+GGG 0.444355 1_1:-30097274 Msa0018010:three_prime_UTR
AGTTCCTGTAAATCATCTTC+GGG 0.445174 1_1:+30097775 None:intergenic
TGTATTATATATGTAGGGGC+GGG 0.457731 1_1:-30097269 Msa0018010:three_prime_UTR
ATTTACCAAAAGCACATCTC+TGG 0.461749 1_1:+30097498 None:intergenic
TATAATTTCAGAAAATGAAC+GGG 0.462438 1_1:-30097460 Msa0018010:three_prime_UTR
TATCTTTGTTGATGAGAGAA+TGG 0.469532 1_1:-30097394 Msa0018010:three_prime_UTR
AGAGATTGTATTATATATGT+AGG 0.471482 1_1:-30097275 Msa0018010:three_prime_UTR
TTGTTGATCCTTCGTTTCAA+GGG 0.483590 1_1:-30099375 Msa0018010:CDS
GTTGCATTTGCAAGAGCTAC+TGG 0.489343 1_1:-30099433 Msa0018010:CDS
TTTGTGGATGCAGTGGCAGA+TGG 0.489647 1_1:-30098538 Msa0018010:intron
TAGCTTCTACCTATTGGGAA+TGG 0.490662 1_1:-30097419 Msa0018010:three_prime_UTR
TTAACCCCTCTGAGGTTCTC+CGG 0.494474 1_1:+30099587 None:intergenic
CGTGAATAAGTGGAGAATAC+AGG 0.495239 1_1:+30097239 None:intergenic
TTTGAAGAAGTTAAGTCGTA+GGG 0.496530 1_1:+30099714 None:intergenic
ATTCTGTTTGTCTCTCCTCT+CGG 0.502029 1_1:-30097700 Msa0018010:three_prime_UTR
CAAGAAATGGTGAGGTTTCG+TGG 0.507526 1_1:+30099676 None:intergenic
TGTAACGCTGTGTATAGAAT+CGG 0.514058 1_1:+30097815 None:intergenic
AAGAGGAATTTGAGAAATCT+GGG 0.514312 1_1:-30098775 Msa0018010:CDS
TGAGGGATCTTGTAGGAAGA+GGG 0.520334 1_1:-30099318 Msa0018010:CDS
ACTCGAGCACACTGACTCAA+TGG 0.522170 1_1:-30099491 Msa0018010:CDS
ATTTGAAGAAGTTAAGTCGT+AGG 0.522993 1_1:+30099713 None:intergenic
ATGAGGGATCTTGTAGGAAG+AGG 0.534453 1_1:-30099319 Msa0018010:CDS
GTATTATATATGTAGGGGCG+GGG 0.537727 1_1:-30097268 Msa0018010:three_prime_UTR
AGTCGTAGGGAGGATGGAAG+AGG 0.540218 1_1:+30099727 None:intergenic
ATATTGAGAGTGGGTAGTCT+AGG 0.541441 1_1:+30099644 None:intergenic
TGTAAATCATCTTCGGGACA+AGG 0.544700 1_1:+30097781 None:intergenic
CGCTGTGTATAGAATCGGAC+TGG 0.547628 1_1:+30097820 None:intergenic
AGGCTTATGAGGGATCTTGT+AGG 0.549706 1_1:-30099325 Msa0018010:CDS
TTTCATATCTCCCACGGCGT+GGG 0.550195 1_1:+30097588 None:intergenic
TGTGTTACAGTATCAATGAC+AGG 0.550272 1_1:-30097844 Msa0018010:intron
AATCACCAAACCTTCAGAGT+TGG 0.552065 1_1:+30098702 None:intergenic
GTATAATTTCAGAAAATGAA+CGG 0.557241 1_1:-30097461 Msa0018010:three_prime_UTR
AGCACACTGACTCAATGGTA+TGG 0.558828 1_1:-30099486 Msa0018010:CDS
TTGTATTATATATGTAGGGG+CGG 0.560479 1_1:-30097270 Msa0018010:three_prime_UTR
ACAAAGTATTCGTAGCAGTA+GGG 0.561588 1_1:-30099549 Msa0018010:CDS
AACAAAGTATTCGTAGCAGT+AGG 0.566118 1_1:-30099550 Msa0018010:CDS
TTGTGGATGCAGTGGCAGAT+GGG 0.569962 1_1:-30098537 Msa0018010:intron
GAAGAAGTTAAGTCGTAGGG+AGG 0.570827 1_1:+30099717 None:intergenic
ATGCAGTGGCAGATGGGTTG+AGG 0.581421 1_1:-30098531 Msa0018010:intron
AGGTGAGTTTCATATATGAA+AGG 0.582816 1_1:-30097346 Msa0018010:three_prime_UTR
GTTTCATATCTCCCACGGCG+TGG 0.585782 1_1:+30097587 None:intergenic
TAATGGCGAACCAACTCTGA+AGG 0.587421 1_1:-30098712 Msa0018010:intron
GTTTCGTCGGATATTGAGAG+TGG 0.590666 1_1:+30099634 None:intergenic
ATTCTCCGGAGAACCTCAGA+GGG 0.594468 1_1:-30099592 Msa0018010:CDS
TTGCTTGACAAGAAATGGTG+AGG 0.596575 1_1:+30099668 None:intergenic
TTCTAGGTTTAACCCCTCTG+AGG 0.598354 1_1:+30099579 None:intergenic
TAATGGAGAGGAATGAGTTG+CGG 0.604021 1_1:-30097634 Msa0018010:three_prime_UTR
TAAGCTCACTCCCACGCCGT+GGG 0.606449 1_1:-30097598 Msa0018010:three_prime_UTR
GATAATATGCTGCTCTTACG+TGG 0.618724 1_1:-30099763 None:intergenic
GTAAATCATCTTCGGGACAA+GGG 0.622918 1_1:+30097782 None:intergenic
AGTCCAAGCCCTTGAAACGA+AGG 0.624386 1_1:+30099367 None:intergenic
TGTTGTCGAGAGGCTTATGA+GGG 0.625783 1_1:-30099335 Msa0018010:CDS
AAATGGTGAGGTTTCGTGGT+GGG 0.635153 1_1:+30099680 None:intergenic
AGATTGTATTATATATGTAG+GGG 0.635495 1_1:-30097273 Msa0018010:three_prime_UTR
TTTGCAAGAGCTACTGGTGA+TGG 0.636078 1_1:-30099427 Msa0018010:CDS
TTTCGTCGGATATTGAGAGT+GGG 0.646235 1_1:+30099635 None:intergenic
AGAGTGTTTCATATCTCCCA+CGG 0.649696 1_1:+30097582 None:intergenic
CATTCTCCGGAGAACCTCAG+AGG 0.650384 1_1:-30099593 Msa0018010:CDS
ATGTGTTGATTGCAGGCAAG+AGG 0.650631 1_1:-30098792 Msa0018010:intron
TAGGGAAAGCTGTTGTCGAG+AGG 0.652617 1_1:-30099345 Msa0018010:CDS
TCGTAGCAGTAGGGTTTCCG+CGG 0.663293 1_1:-30099540 Msa0018010:CDS
ATAAGCTCACTCCCACGCCG+TGG 0.669119 1_1:-30097599 Msa0018010:three_prime_UTR
GGATCAGCAACAAAACCCAA+AGG 0.674227 1_1:+30099244 None:intergenic
GAAGAAGTCGCAGAATAATG+CGG 0.693298 1_1:-30099455 Msa0018010:CDS
ATGTCACACAGAAAGCCGAG+AGG 0.763987 1_1:+30097685 None:intergenic
GAAATGGTGAGGTTTCGTGG+TGG 0.768689 1_1:+30099679 None:intergenic
TTCTCCGGAGAACCTCAGAG+GGG 0.790280 1_1:-30099591 Msa0018010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATCTATAAACTCTTTA+TGG + chr1_1:30097855-30097874 None:intergenic 15.0%
!! ATAAAGCTAAATAAAGTTAA+TGG - chr1_1:30097871-30097890 Msa0018010:intron 15.0%
!! TTAAATTCGTTACATATTTA+AGG + chr1_1:30097969-30097988 None:intergenic 15.0%
!!! TTGTTTAACTTTGTAATTTA+TGG - chr1_1:30098482-30098501 Msa0018010:intron 15.0%
!!! AATTTGTGATTGAAATTTTT+AGG - chr1_1:30098801-30098820 Msa0018010:intron 15.0%
!!! TTGAATTTATTGATTTCTTA+AGG - chr1_1:30098883-30098902 Msa0018010:intron 15.0%
!! TAATGAAAGAGTCAATTTAA+GGG + chr1_1:30098266-30098285 None:intergenic 20.0%
!! ATAATGAAAGAGTCAATTTA+AGG + chr1_1:30098267-30098286 None:intergenic 20.0%
!!! TTTTGCCTTTTTTTTATTTG+TGG - chr1_1:30098347-30098366 Msa0018010:intron 20.0%
!! TAATTTATGGAAGTTAACAA+CGG - chr1_1:30098495-30098514 Msa0018010:intron 20.0%
!!! TTTTTAGGACTAATTGAATT+TGG - chr1_1:30098816-30098835 Msa0018010:intron 20.0%
!! AAATTCAATCTAAATCAAAC+AGG + chr1_1:30098871-30098890 None:intergenic 20.0%
!! GTATAATTTCAGAAAATGAA+CGG - chr1_1:30099440-30099459 Msa0018010:CDS 20.0%
!! TATAATTTCAGAAAATGAAC+GGG - chr1_1:30099441-30099460 Msa0018010:CDS 20.0%
!! TCTACACAATTGAATAAAAA+AGG - chr1_1:30099535-30099554 Msa0018010:CDS 20.0%
!! AGAGATTGTATTATATATGT+AGG - chr1_1:30099626-30099645 Msa0018010:CDS 20.0%
!! GAGATTGTATTATATATGTA+GGG - chr1_1:30099627-30099646 Msa0018010:CDS 20.0%
!! AGATTGTATTATATATGTAG+GGG - chr1_1:30099628-30099647 Msa0018010:CDS 20.0%
!! TGTTTTCAATGCCATAATAT+GGG - chr1_1:30097497-30097516 Msa0018010:three_prime_UTR 25.0%
! AAGAATTGCTGAAAATAAAG+TGG + chr1_1:30098232-30098251 None:intergenic 25.0%
! ATGAGTGACGTATAAAAATA+TGG + chr1_1:30098321-30098340 None:intergenic 25.0%
! TGCATCCACAAATAAAAAAA+AGG + chr1_1:30098355-30098374 None:intergenic 25.0%
!!! TTGTCTGTTGTTTTACATTT+AGG - chr1_1:30098406-30098425 Msa0018010:intron 25.0%
!!! TTCTTAAGGTATTGTAGATT+AGG - chr1_1:30098897-30098916 Msa0018010:intron 25.0%
! TGATATATGTTAACTGAGAA+AGG - chr1_1:30098947-30098966 Msa0018010:intron 25.0%
! ATGCATCTCTATTTATTGTT+TGG - chr1_1:30099003-30099022 Msa0018010:intron 25.0%
!!! ATTATGCGTTTTTTATGGAA+AGG + chr1_1:30099251-30099270 None:intergenic 25.0%
! TTTCCATAAAAAACGCATAA+TGG - chr1_1:30099250-30099269 Msa0018010:CDS 25.0%
TTTGAAGAAGTTAAGTCGTA+GGG + chr1_1:30097190-30097209 None:intergenic 30.0%
ATTTGAAGAAGTTAAGTCGT+AGG + chr1_1:30097191-30097210 None:intergenic 30.0%
ATACTTTGTTAAGTGCTTCT+AGG + chr1_1:30097341-30097360 None:intergenic 30.0%
! GTGTTTTCAATGCCATAATA+TGG - chr1_1:30097496-30097515 Msa0018010:three_prime_UTR 30.0%
AACAACAACATCCCATATTA+TGG + chr1_1:30097511-30097530 None:intergenic 30.0%
ACTTGTTTGAACTTATCTAG+TGG + chr1_1:30097933-30097952 None:intergenic 30.0%
GAATTTAAGCTTACATGTTG+AGG - chr1_1:30097981-30098000 Msa0018010:intron 30.0%
AAGAGGAATTTGAGAAATCT+GGG - chr1_1:30098126-30098145 Msa0018010:intron 30.0%
!!! TTTTTTATTTGTGGATGCAG+TGG - chr1_1:30098356-30098375 Msa0018010:intron 30.0%
TTGTAGTTATTCTGTCCATT+CGG - chr1_1:30098449-30098468 Msa0018010:intron 30.0%
TGCATACCGTTGTTAAAAAA+GGG + chr1_1:30098703-30098722 None:intergenic 30.0%
TTGCATACCGTTGTTAAAAA+AGG + chr1_1:30098704-30098723 None:intergenic 30.0%
GAACACATCAATATACTTAC+AGG - chr1_1:30098755-30098774 Msa0018010:CDS 30.0%
AAGTTCCTGTAAATCATCTT+CGG + chr1_1:30099130-30099149 None:intergenic 30.0%
!!! TCTCCATTATGCGTTTTTTA+TGG + chr1_1:30099256-30099275 None:intergenic 30.0%
! ATAAAAAACGCATAATGGAG+AGG - chr1_1:30099255-30099274 Msa0018010:CDS 30.0%
AAAGATAATCCATTCCCAAT+AGG + chr1_1:30099494-30099513 None:intergenic 30.0%
! TATCTTTGTTGATGAGAGAA+TGG - chr1_1:30099507-30099526 Msa0018010:CDS 30.0%
AGGTGAGTTTCATATATGAA+AGG - chr1_1:30099555-30099574 Msa0018010:CDS 30.0%
TTGTATTATATATGTAGGGG+CGG - chr1_1:30099631-30099650 Msa0018010:CDS 30.0%
AAAGGTGAGATTTCAATCAT+TGG - chr1_1:30099688-30099707 Msa0018010:CDS 30.0%
!! TCGTTTTTCTAGTGTTTCGT+CGG + chr1_1:30097283-30097302 None:intergenic 35.0%
AAAAACGAGGTTTCATTCTC+CGG - chr1_1:30097295-30097314 Msa0018010:three_prime_UTR 35.0%
! AACAAAGTATTCGTAGCAGT+AGG - chr1_1:30097351-30097370 Msa0018010:three_prime_UTR 35.0%
! ACAAAGTATTCGTAGCAGTA+GGG - chr1_1:30097352-30097371 Msa0018010:three_prime_UTR 35.0%
TTGTTGATCCTTCGTTTCAA+GGG - chr1_1:30097526-30097545 Msa0018010:three_prime_UTR 35.0%
CTCAGAGTAAAGAGCAATAT+TGG + chr1_1:30097613-30097632 None:intergenic 35.0%
TTAAGCTTACATGTTGAGGT+CGG - chr1_1:30097985-30098004 Msa0018010:intron 35.0%
!! AACTTGTATGTGTTGATTGC+AGG - chr1_1:30098102-30098121 Msa0018010:intron 35.0%
CAAGAGGAATTTGAGAAATC+TGG - chr1_1:30098125-30098144 Msa0018010:intron 35.0%
CAAGCTGCAAACTCAAATAA+TGG - chr1_1:30098172-30098191 Msa0018010:intron 35.0%
AACAAAGTTGCATAACCGAA+TGG + chr1_1:30098467-30098486 None:intergenic 35.0%
TTAACAACGGTATGCAAAAG+AGG - chr1_1:30098508-30098527 Msa0018010:three_prime_UTR 35.0%
TAACAACGGTATGCAAAAGA+GGG - chr1_1:30098509-30098528 Msa0018010:three_prime_UTR 35.0%
TTGTCATGTGACTAACATCA+CGG - chr1_1:30098559-30098578 Msa0018010:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr1_1:30098604-30098623 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr1_1:30098603-30098622 Msa0018010:intron 35.0%
ATTGATGTGTTCGATACAGT+AGG + chr1_1:30098747-30098766 None:intergenic 35.0%
TCACAAATTCAAATCAGTCC+AGG + chr1_1:30098790-30098809 None:intergenic 35.0%
TGTGTTACAGTATCAATGAC+AGG - chr1_1:30099057-30099076 Msa0018010:intron 35.0%
TGTAACGCTGTGTATAGAAT+CGG + chr1_1:30099089-30099108 None:intergenic 35.0%
AGTTCCTGTAAATCATCTTC+GGG + chr1_1:30099129-30099148 None:intergenic 35.0%
!!! ATGCGTTTTTTATGGAAAGG+CGG + chr1_1:30099248-30099267 None:intergenic 35.0%
! AGAGAGTAGACTCTGAAAAA+GGG + chr1_1:30099361-30099380 None:intergenic 35.0%
! ATTTACCAAAAGCACATCTC+TGG + chr1_1:30099406-30099425 None:intergenic 35.0%
!!! TGCTTTTAGCTTCTACCTAT+TGG - chr1_1:30099476-30099495 Msa0018010:CDS 35.0%
!!! GCTTTTAGCTTCTACCTATT+GGG - chr1_1:30099477-30099496 Msa0018010:CDS 35.0%
GAGAACATGAGAGAAAAAGA+TGG - chr1_1:30099603-30099622 Msa0018010:CDS 35.0%
TGTATTATATATGTAGGGGC+GGG - chr1_1:30099632-30099651 Msa0018010:CDS 35.0%
CTCCACTTATTCACGTTAAA+AGG - chr1_1:30099670-30099689 Msa0018010:CDS 35.0%
! CACCTTTTAACGTGAATAAG+TGG + chr1_1:30099675-30099694 None:intergenic 35.0%
TTGCTTGACAAGAAATGGTG+AGG + chr1_1:30097236-30097255 None:intergenic 40.0%
! TAGGCTTGCTTGACAAGAAA+TGG + chr1_1:30097241-30097260 None:intergenic 40.0%
ATATTGAGAGTGGGTAGTCT+AGG + chr1_1:30097260-30097279 None:intergenic 40.0%
TTTCGTCGGATATTGAGAGT+GGG + chr1_1:30097269-30097288 None:intergenic 40.0%
GACGAAACACTAGAAAAACG+AGG - chr1_1:30097282-30097301 Msa0018010:three_prime_UTR 40.0%
! GTGCAATGCGTATTTTCTCA+GGG + chr1_1:30097392-30097411 None:intergenic 40.0%
! AGTGCAATGCGTATTTTCTC+AGG + chr1_1:30097393-30097412 None:intergenic 40.0%
GAAGAAGTCGCAGAATAATG+CGG - chr1_1:30097446-30097465 Msa0018010:three_prime_UTR 40.0%
GTTGTTGATCCTTCGTTTCA+AGG - chr1_1:30097525-30097544 Msa0018010:three_prime_UTR 40.0%
CGATAAAAGCCAAGAACTCT+TGG + chr1_1:30097636-30097655 None:intergenic 40.0%
!! TCTTGGCTTTTATCGACCTT+TGG - chr1_1:30097641-30097660 Msa0018010:three_prime_UTR 40.0%
!! CTTGGCTTTTATCGACCTTT+GGG - chr1_1:30097642-30097661 Msa0018010:three_prime_UTR 40.0%
TAAGCTTACATGTTGAGGTC+GGG - chr1_1:30097986-30098005 Msa0018010:intron 40.0%
GAAATCTGGGCACATCAAAA+AGG - chr1_1:30098139-30098158 Msa0018010:intron 40.0%
AATCACCAAACCTTCAGAGT+TGG + chr1_1:30098202-30098221 None:intergenic 40.0%
AACAACGGTATGCAAAAGAG+GGG - chr1_1:30098510-30098529 Msa0018010:three_prime_UTR 40.0%
TGTCATGTGACTAACATCAC+GGG - chr1_1:30098560-30098579 Msa0018010:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr1_1:30098597-30098616 Msa0018010:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr1_1:30098598-30098617 Msa0018010:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr1_1:30098629-30098648 Msa0018010:intron 40.0%
GTTGTTAAAAAAGGGCAACC+CGG + chr1_1:30098695-30098714 None:intergenic 40.0%
!!! GGGTTGCCCTTTTTTAACAA+CGG - chr1_1:30098694-30098713 Msa0018010:intron 40.0%
CACAAGAAAAGAAGCCAATC+AGG + chr1_1:30099041-30099060 None:intergenic 40.0%
GTAAATCATCTTCGGGACAA+GGG + chr1_1:30099122-30099141 None:intergenic 40.0%
TGTAAATCATCTTCGGGACA+AGG + chr1_1:30099123-30099142 None:intergenic 40.0%
TTGTCCCGAAGATGATTTAC+AGG - chr1_1:30099122-30099141 Msa0018010:intron 40.0%
ATTCTGTTTGTCTCTCCTCT+CGG - chr1_1:30099201-30099220 Msa0018010:intron 40.0%
TAATGGAGAGGAATGAGTTG+CGG - chr1_1:30099267-30099286 Msa0018010:CDS 40.0%
! AGAGTGTTTCATATCTCCCA+CGG + chr1_1:30099322-30099341 None:intergenic 40.0%
AAACACTCTCTCACCATAGA+AGG - chr1_1:30099333-30099352 Msa0018010:CDS 40.0%
! GAGAGAGTAGACTCTGAAAA+AGG + chr1_1:30099362-30099381 None:intergenic 40.0%
AGAGTCTACTCTCTCTAGTT+TGG - chr1_1:30099367-30099386 Msa0018010:CDS 40.0%
! TTCATCCAGAGATGTGCTTT+TGG - chr1_1:30099398-30099417 Msa0018010:CDS 40.0%
TAGCTTCTACCTATTGGGAA+TGG - chr1_1:30099482-30099501 Msa0018010:CDS 40.0%
GTATTATATATGTAGGGGCG+GGG - chr1_1:30099633-30099652 Msa0018010:CDS 40.0%
CGTGAATAAGTGGAGAATAC+AGG + chr1_1:30099665-30099684 None:intergenic 40.0%
AAGTTAAGTCGTAGGGAGGA+TGG + chr1_1:30097183-30097202 None:intergenic 45.0%
GAAGAAGTTAAGTCGTAGGG+AGG + chr1_1:30097187-30097206 None:intergenic 45.0%
AAATGGTGAGGTTTCGTGGT+GGG + chr1_1:30097224-30097243 None:intergenic 45.0%
CAAGAAATGGTGAGGTTTCG+TGG + chr1_1:30097228-30097247 None:intergenic 45.0%
GTTTCGTCGGATATTGAGAG+TGG + chr1_1:30097270-30097289 None:intergenic 45.0%
TTCTAGGTTTAACCCCTCTG+AGG + chr1_1:30097325-30097344 None:intergenic 45.0%
!! AGCACACTGACTCAATGGTA+TGG - chr1_1:30097415-30097434 Msa0018010:three_prime_UTR 45.0%
GTTGCATTTGCAAGAGCTAC+TGG - chr1_1:30097468-30097487 Msa0018010:three_prime_UTR 45.0%
TTTGCAAGAGCTACTGGTGA+TGG - chr1_1:30097474-30097493 Msa0018010:three_prime_UTR 45.0%
TGTTGTCGAGAGGCTTATGA+GGG - chr1_1:30097566-30097585 Msa0018010:three_prime_UTR 45.0%
AGGCTTATGAGGGATCTTGT+AGG - chr1_1:30097576-30097595 Msa0018010:three_prime_UTR 45.0%
ATGAGGGATCTTGTAGGAAG+AGG - chr1_1:30097582-30097601 Msa0018010:three_prime_UTR 45.0%
TGAGGGATCTTGTAGGAAGA+GGG - chr1_1:30097583-30097602 Msa0018010:three_prime_UTR 45.0%
TACTCTGAGCCAAGAGTTCT+TGG - chr1_1:30097624-30097643 Msa0018010:three_prime_UTR 45.0%
GGATCAGCAACAAAACCCAA+AGG + chr1_1:30097660-30097679 None:intergenic 45.0%
!!! GGTTTTGTTGCTGATCCTGA+TGG - chr1_1:30097663-30097682 Msa0018010:three_prime_UTR 45.0%
TCCTGATGGTATTCGTGGAA+TGG - chr1_1:30097677-30097696 Msa0018010:three_prime_UTR 45.0%
ACCATTCCACGAATACCATC+AGG + chr1_1:30097681-30097700 None:intergenic 45.0%
!! ATGTGTTGATTGCAGGCAAG+AGG - chr1_1:30098109-30098128 Msa0018010:intron 45.0%
TAATGGCGAACCAACTCTGA+AGG - chr1_1:30098189-30098208 Msa0018010:intron 45.0%
ATGCAAAAGAGGGGTAACCT+TGG - chr1_1:30098519-30098538 Msa0018010:three_prime_UTR 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr1_1:30098593-30098612 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr1_1:30098625-30098644 Msa0018010:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr1_1:30098628-30098647 Msa0018010:intron 45.0%
ACTTACAGGCAAACATGACC+TGG - chr1_1:30098769-30098788 Msa0018010:CDS 45.0%
!! GGAAGATCGATTTGCCTGAT+TGG - chr1_1:30099024-30099043 Msa0018010:intron 45.0%
AATGGAGAGGAATGAGTTGC+GGG - chr1_1:30099268-30099287 Msa0018010:CDS 45.0%
!! CTGAAAAAGGGTGCCTTCTA+TGG + chr1_1:30099349-30099368 None:intergenic 45.0%
!!! ATAATTTAATTTCTTTAAAA+TGG - chr1_1:30099725-30099744 Msa0018010:CDS 5.0%
GAAATGGTGAGGTTTCGTGG+TGG + chr1_1:30097225-30097244 None:intergenic 50.0%
ATTCTCCGGAGAACCTCAGA+GGG - chr1_1:30097309-30097328 Msa0018010:three_prime_UTR 50.0%
!! TTAACCCCTCTGAGGTTCTC+CGG + chr1_1:30097317-30097336 None:intergenic 50.0%
!! ACTCGAGCACACTGACTCAA+TGG - chr1_1:30097410-30097429 Msa0018010:three_prime_UTR 50.0%
GATCCTTCGTTTCAAGGGCT+TGG - chr1_1:30097531-30097550 Msa0018010:three_prime_UTR 50.0%
AGTCCAAGCCCTTGAAACGA+AGG + chr1_1:30097537-30097556 None:intergenic 50.0%
TCGTTTCAAGGGCTTGGACT+AGG - chr1_1:30097537-30097556 Msa0018010:three_prime_UTR 50.0%
CGTTTCAAGGGCTTGGACTA+GGG - chr1_1:30097538-30097557 Msa0018010:three_prime_UTR 50.0%
TAGGGAAAGCTGTTGTCGAG+AGG - chr1_1:30097556-30097575 Msa0018010:three_prime_UTR 50.0%
CTGTTGTCGAGAGGCTTATG+AGG - chr1_1:30097565-30097584 Msa0018010:three_prime_UTR 50.0%
GCTGATCCTGATGGTATTCG+TGG - chr1_1:30097672-30097691 Msa0018010:three_prime_UTR 50.0%
! GCGAACCAACTCTGAAGGTT+TGG - chr1_1:30098194-30098213 Msa0018010:intron 50.0%
TTTGTGGATGCAGTGGCAGA+TGG - chr1_1:30098363-30098382 Msa0018010:intron 50.0%
TTGTGGATGCAGTGGCAGAT+GGG - chr1_1:30098364-30098383 Msa0018010:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr1_1:30098539-30098558 None:intergenic 50.0%
AACATCACGGGTTCAAGTCC+TGG - chr1_1:30098572-30098591 Msa0018010:intron 50.0%
CGCTGTGTATAGAATCGGAC+TGG + chr1_1:30099084-30099103 None:intergenic 50.0%
ATGTCACACAGAAAGCCGAG+AGG + chr1_1:30099219-30099238 None:intergenic 50.0%
TTTCATATCTCCCACGGCGT+GGG + chr1_1:30099316-30099335 None:intergenic 50.0%
AGTCGTAGGGAGGATGGAAG+AGG + chr1_1:30097177-30097196 None:intergenic 55.0%
CATTCTCCGGAGAACCTCAG+AGG - chr1_1:30097308-30097327 Msa0018010:three_prime_UTR 55.0%
TTCTCCGGAGAACCTCAGAG+GGG - chr1_1:30097310-30097329 Msa0018010:three_prime_UTR 55.0%
TCGTAGCAGTAGGGTTTCCG+CGG - chr1_1:30097361-30097380 Msa0018010:three_prime_UTR 55.0%
!! ATGCAGTGGCAGATGGGTTG+AGG - chr1_1:30098370-30098389 Msa0018010:intron 55.0%
GTTTCATATCTCCCACGGCG+TGG + chr1_1:30099317-30099336 None:intergenic 55.0%
! ATTTTCTCAGGGTCGCGCCG+CGG + chr1_1:30097381-30097400 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr1_1:30098528-30098547 Msa0018010:three_prime_UTR 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr1_1:30098641-30098660 Msa0018010:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr1_1:30098668-30098687 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr1_1:30098669-30098688 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr1_1:30098673-30098692 Msa0018010:intron 60.0%
ATAAGCTCACTCCCACGCCG+TGG - chr1_1:30099302-30099321 Msa0018010:CDS 60.0%
TAAGCTCACTCCCACGCCGT+GGG - chr1_1:30099303-30099322 Msa0018010:CDS 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_1:30098643-30098662 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr1_1:30098656-30098675 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr1_1:30098657-30098676 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr1_1:30098656-30098675 Msa0018010:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr1_1:30098657-30098676 Msa0018010:intron 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr1_1:30098674-30098693 Msa0018010:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr1_1:30098658-30098677 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr1_1:30098662-30098681 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr1_1:30098663-30098682 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 30097144 30099779 30097144 ID=Msa0018010;Name=Msa0018010
chr1_1 mRNA 30097144 30099779 30097144 ID=Msa0018010-mRNA-1;Parent=Msa0018010;Name=Msa0018010-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.66|0.75|1|0.33|0.5|4|784|202
chr1_1 exon 30097144 30097856 30097144 ID=Msa0018010-mRNA-1:exon:10106;Parent=Msa0018010-mRNA-1
chr1_1 exon 30098496 30098547 30098496 ID=Msa0018010-mRNA-1:exon:10105;Parent=Msa0018010-mRNA-1
chr1_1 exon 30098713 30098799 30098713 ID=Msa0018010-mRNA-1:exon:10104;Parent=Msa0018010-mRNA-1
chr1_1 exon 30099239 30099779 30099239 ID=Msa0018010-mRNA-1:exon:10103;Parent=Msa0018010-mRNA-1
chr1_1 CDS 30099239 30099779 30099239 ID=Msa0018010-mRNA-1:cds;Parent=Msa0018010-mRNA-1
chr1_1 CDS 30098732 30098799 30098732 ID=Msa0018010-mRNA-1:cds;Parent=Msa0018010-mRNA-1
chr1_1 three_prime_UTR 30098713 30098731 30098713 ID=Msa0018010-mRNA-1:three_prime_utr;Parent=Msa0018010-mRNA-1
chr1_1 three_prime_UTR 30098496 30098547 30098496 ID=Msa0018010-mRNA-1:three_prime_utr;Parent=Msa0018010-mRNA-1
chr1_1 three_prime_UTR 30097144 30097856 30097144 ID=Msa0018010-mRNA-1:three_prime_utr;Parent=Msa0018010-mRNA-1
Gene Sequence

>Msa0018010

ATGCTGCTCTTACGTGGCAACATCTATGCTCCTCTTCCATCCTCCCTACGACTTAACTTCTTCAAATCACAAACTCACCCACCACGAAACCTCACCATTTCTTGTCAAGCAAGCCTAGACTACCCACTCTCAATATCCGACGAAACACTAGAAAAACGAGGTTTCATTCTCCGGAGAACCTCAGAGGGGTTAAACCTAGAAGCACTTAACAAAGTATTCGTAGCAGTAGGGTTTCCGCGGCGCGACCCTGAGAAAATACGCATTGCACTCGAGCACACTGACTCAATGGTATGGATACAACAGAAGAAGTCGCAGAATAATGCGGTTGCATTTGCAAGAGCTACTGGTGATGGTGTTTTCAATGCCATAATATGGGATGTTGTTGTTGATCCTTCGTTTCAAGGGCTTGGACTAGGGAAAGCTGTTGTCGAGAGGCTTATGAGGGATCTTGTAGGAAGAGGGATTACCAATATTGCTCTTTACTCTGAGCCAAGAGTTCTTGGCTTTTATCGACCTTTGGGTTTTGTTGCTGATCCTGATGGCAAGAGGAATTTGAGAAATCTGGGCACATCAAAAAGGAATGTCAAAGCAAGCTGCAAACTCAAATAA

Protein sequence

>Msa0018010

MLLLRGNIYAPLPSSLRLNFFKSQTHPPRNLTISCQASLDYPLSISDETLEKRGFILRRTSEGLNLEALNKVFVAVGFPRRDPEKIRIALEHTDSMVWIQQKKSQNNAVAFARATGDGVFNAIIWDVVVDPSFQGLGLGKAVVERLMRDLVGRGITNIALYSEPRVLGFYRPLGFVADPDGKRNLRNLGTSKRNVKASCKLK*