AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444500 MtrunA17_Chr3g0129351 86.517 267 23 2 1 267 1 254 1.12e-161 451
Msa1444500 MtrunA17_Chr8g0375201 33.784 148 88 2 115 262 107 244 6.45e-18 81.6
Msa1444500 MtrunA17_Chr7g0263181 26.354 277 158 8 20 268 45 303 9.48e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444500 AT4G39470.1 46.667 195 88 3 62 251 66 249 5.02e-48 162
Msa1444500 AT3G18420.1 31.250 192 109 5 73 251 54 235 1.60e-15 75.5

Find 55 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGTATTTGGAAATTT+TGG 0.111951 tig0030733:-1505 Msa1444500:CDS
TGTTGATTCAGCTGAAATTT+TGG 0.183578 tig0030733:-1724 Msa1444500:CDS
TAAGGCTAAAGGATTGTATT+TGG 0.219222 tig0030733:-1514 Msa1444500:CDS
AACAAGTGCATAGTGATAAA+TGG 0.231649 tig0030733:+1898 None:intergenic
AAAATTGTGGAGGGTGTTAA+TGG 0.334111 tig0030733:+1867 None:intergenic
AGAAGGGAATTGGGGAGATA+TGG 0.336995 tig0030733:+1990 None:intergenic
TGCAGGGTGGTGATTGGAGG+AGG 0.342248 tig0030733:-82 Msa1444500:intron
TGGTTGTGTATGGGAAAATT+AGG 0.344777 tig0030733:-1653 Msa1444500:CDS
AGCCTCCACTCAACCTCATT+TGG 0.359412 tig0030733:+1576 None:intergenic
TTGCACAAATGTGTTGTAAC+AGG 0.393647 tig0030733:-218 Msa1444500:intron
TCGTGGCAAAAGAAGGGAAT+TGG 0.399875 tig0030733:+1980 None:intergenic
GTGCTTTGCAGGGTGGTGAT+TGG 0.412479 tig0030733:-88 Msa1444500:intron
CGTGGCAAAAGAAGGGAATT+GGG 0.418032 tig0030733:+1981 None:intergenic
ACAAGTGCATAGTGATAAAT+GGG 0.468344 tig0030733:+1899 None:intergenic
GCTCTTAAAGTGGTTGTGTA+TGG 0.470707 tig0030733:-1663 Msa1444500:CDS
CTTTGCAGGGTGGTGATTGG+AGG 0.472237 tig0030733:-85 Msa1444500:intron
TTACGGAGGAGAGAAATATA+AGG 0.473332 tig0030733:-248 Msa1444500:CDS
TACGAATTCGTGGCAAAAGA+AGG 0.481369 tig0030733:+1973 None:intergenic
GGTTGAAGTGAAATTGATAA+GGG 0.483895 tig0030733:+1939 None:intergenic
TTCAGCATTTCAAATACAGC+AGG 0.497693 tig0030733:+306 None:intergenic
GACAATGGGGTATTTGAGTA+AGG 0.500527 tig0030733:-1532 Msa1444500:CDS
CTCTTAAAGTGGTTGTGTAT+GGG 0.502104 tig0030733:-1662 Msa1444500:CDS
GCAGGGTGGTGATTGGAGGA+GGG 0.506318 tig0030733:-81 Msa1444500:intron
AAGCTGAGAAGTTTGTGAAG+AGG 0.509773 tig0030733:-1614 Msa1444500:CDS
TGGTTGAAGTGAAATTGATA+AGG 0.510289 tig0030733:+1938 None:intergenic
ATGAAGAGCTCTAACAAAAG+AGG 0.525108 tig0030733:+1474 None:intergenic
GGGTATTTGAGTAAGGCTAA+AGG 0.536389 tig0030733:-1525 Msa1444500:CDS
GCATTGTGTTATGAGACAAT+GGG 0.536548 tig0030733:-1546 Msa1444500:CDS
AAATGTTGAGGCTCTTAAAG+TGG 0.543541 tig0030733:-1673 Msa1444500:CDS
CATTAATGAAAACAAAGTTA+CGG 0.546563 tig0030733:-265 Msa1444500:CDS
GGTACTGAAACTGCAAAAGC+GGG 0.549723 tig0030733:+1750 None:intergenic
AAGTTGGTTAAAGTTGTTTG+AGG 0.558821 tig0030733:+1840 None:intergenic
GGAGGGTGTTAATGGAGTGC+GGG 0.560063 tig0030733:+1875 None:intergenic
TGCATTGTGTTATGAGACAA+TGG 0.562265 tig0030733:-1547 Msa1444500:CDS
GATTGATGAGGAACCAAATG+AGG 0.565692 tig0030733:-1589 Msa1444500:CDS
TGGAGGGTGTTAATGGAGTG+CGG 0.568184 tig0030733:+1874 None:intergenic
TTGTTGCAGATACGAATTCG+TGG 0.574634 tig0030733:+1963 None:intergenic
AGGAACCAAATGAGGTTGAG+TGG 0.584513 tig0030733:-1581 Msa1444500:CDS
ACGAATTCGTGGCAAAAGAA+GGG 0.586466 tig0030733:+1974 None:intergenic
AGGTACTGAAACTGCAAAAG+CGG 0.602398 tig0030733:+1749 None:intergenic
TGTGAAGAGGTTGATTGATG+AGG 0.608344 tig0030733:-1601 Msa1444500:CDS
TGTTTGAGGTGAGAAAATTG+TGG 0.610889 tig0030733:+1854 None:intergenic
GAAGGATTCAAGAAATGTTG+AGG 0.622010 tig0030733:-1685 Msa1444500:CDS
TGTATGGGAAAATTAGGAGA+GGG 0.623027 tig0030733:-1647 Msa1444500:CDS
ATTTCAGCTGAATCAACAGA+AGG 0.625556 tig0030733:+1729 None:intergenic
TGAGGTGAGAAAATTGTGGA+GGG 0.628555 tig0030733:+1858 None:intergenic
GTGTATGGGAAAATTAGGAG+AGG 0.651978 tig0030733:-1648 Msa1444500:CDS
GTGGCAAAAGAAGGGAATTG+GGG 0.656867 tig0030733:+1982 None:intergenic
TGTATTTGAAATGCTGAACA+AGG 0.665874 tig0030733:-301 Msa1444500:CDS
TTGAGGTGAGAAAATTGTGG+AGG 0.671928 tig0030733:+1857 None:intergenic
AACCAAATGAGGTTGAGTGG+AGG 0.677766 tig0030733:-1578 Msa1444500:CDS
TAATGAAAACAAAGTTACGG+AGG 0.686188 tig0030733:-262 Msa1444500:CDS
GAGATATGGTTTGAACTCTG+AGG 0.695791 tig0030733:+2004 None:intergenic
CTCTGAGGAGATGAAGAGAG+TGG 0.713127 tig0030733:+2019 None:intergenic
CATTGTGTTATGAGACAATG+GGG 0.737873 tig0030733:-1545 Msa1444500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGATTAGAAATT+TGG - tig0030733:786-805 Msa1444500:intron 15.0%
!!! TCAAATTTTGATTAGAAATT+TGG - tig0030733:786-805 Msa1444500:intron 15.0%
!!! AAAGTTTCATTTTTTCTCAT+TGG - tig0030733:309-328 Msa1444500:CDS 20.0%
!!! AAGTTTCATTTTTTCTCATT+GGG - tig0030733:310-329 Msa1444500:CDS 20.0%
!!! TATATCTGTTTTTGTTTTGA+TGG - tig0030733:682-701 Msa1444500:intron 20.0%
!! TTTGATTATGATTGAAAAGT+TGG - tig0030733:736-755 Msa1444500:intron 20.0%
!!! ATATGAATGCTTTTTTGTTT+AGG - tig0030733:759-778 Msa1444500:intron 20.0%
!! AATAAAGAGTTAAGAACTTA+GGG + tig0030733:1244-1263 None:intergenic 20.0%
!! AAATAAAGAGTTAAGAACTT+AGG + tig0030733:1245-1264 None:intergenic 20.0%
!! CAAAACAATATAAGCATAAT+AGG + tig0030733:1349-1368 None:intergenic 20.0%
!! TTTATGTGATGAATATTAGA+CGG - tig0030733:1418-1437 Msa1444500:intron 20.0%
!!! GTAATACATTACTATTTTGA+CGG + tig0030733:1659-1678 None:intergenic 20.0%
!! CATTAATGAAAACAAAGTTA+CGG - tig0030733:1851-1870 Msa1444500:CDS 20.0%
!!! AAAGTTTCATTTTTTCTCAT+TGG - tig0030733:309-328 Msa1444500:CDS 20.0%
!!! AAGTTTCATTTTTTCTCATT+GGG - tig0030733:310-329 Msa1444500:CDS 20.0%
!!! TATATCTGTTTTTGTTTTGA+TGG - tig0030733:682-701 Msa1444500:intron 20.0%
!! TTTGATTATGATTGAAAAGT+TGG - tig0030733:736-755 Msa1444500:intron 20.0%
!!! ATATGAATGCTTTTTTGTTT+AGG - tig0030733:759-778 Msa1444500:intron 20.0%
!! AATAAAGAGTTAAGAACTTA+GGG + tig0030733:1244-1263 None:intergenic 20.0%
!! AAATAAAGAGTTAAGAACTT+AGG + tig0030733:1245-1264 None:intergenic 20.0%
!! CAAAACAATATAAGCATAAT+AGG + tig0030733:1349-1368 None:intergenic 20.0%
!! TTTATGTGATGAATATTAGA+CGG - tig0030733:1418-1437 Msa1444500:intron 20.0%
!!! GTAATACATTACTATTTTGA+CGG + tig0030733:1659-1678 None:intergenic 20.0%
!! CATTAATGAAAACAAAGTTA+CGG - tig0030733:1851-1870 Msa1444500:CDS 20.0%
!! TTTTCGTCATTCATTCAAAA+TGG - tig0030733:59-78 Msa1444500:CDS 25.0%
!! AACTTTTTGTGAAATGAAGT+TGG + tig0030733:295-314 None:intergenic 25.0%
!! AGGATTGTATTTGGAAATTT+TGG - tig0030733:611-630 Msa1444500:intron 25.0%
!!! ATTTGGAAATTTTGGAGAAT+TGG - tig0030733:619-638 Msa1444500:intron 25.0%
! TTTGATGGAATTATGAATGT+TGG - tig0030733:697-716 Msa1444500:intron 25.0%
!!! ACATTGATAATTGTTGACTT+AGG - tig0030733:822-841 Msa1444500:intron 25.0%
!!! CATTGATAATTGTTGACTTA+GGG - tig0030733:823-842 Msa1444500:intron 25.0%
!!! TAGTTGTGAGAATGTTTTAA+AGG - tig0030733:878-897 Msa1444500:intron 25.0%
!!! AGTTGTGAGAATGTTTTAAA+GGG - tig0030733:879-898 Msa1444500:intron 25.0%
!!! TGTTTTTTCATAAGTTATCG+TGG + tig0030733:965-984 None:intergenic 25.0%
! ATGCAATCATATTTGCATAA+AGG + tig0030733:1191-1210 None:intergenic 25.0%
!! TAAAACCCATGTATGAATTT+TGG - tig0030733:1291-1310 Msa1444500:intron 25.0%
! AACATCCAAAATTCATACAT+GGG + tig0030733:1299-1318 None:intergenic 25.0%
! TCACATAAATTTACAATCAC+AGG + tig0030733:1407-1426 None:intergenic 25.0%
!!! ATAGCTGTTATTTTGACAAT+TGG + tig0030733:1460-1479 None:intergenic 25.0%
! AATTGTCAAAATAACAGCTA+TGG - tig0030733:1459-1478 Msa1444500:intron 25.0%
! AATCTGAATCCAAAGTAAAA+TGG + tig0030733:1556-1575 None:intergenic 25.0%
!!! CGTAACTTTGTTTTCATTAA+TGG + tig0030733:1853-1872 None:intergenic 25.0%
!! TAACATGAACAATGTCTTTT+TGG - tig0030733:1977-1996 Msa1444500:CDS 25.0%
!!! TGTCTTTTTGGAGAATTATT+TGG - tig0030733:1989-2008 Msa1444500:CDS 25.0%
!! TTTTCGTCATTCATTCAAAA+TGG - tig0030733:59-78 Msa1444500:CDS 25.0%
!! AACTTTTTGTGAAATGAAGT+TGG + tig0030733:295-314 None:intergenic 25.0%
!! AGGATTGTATTTGGAAATTT+TGG - tig0030733:611-630 Msa1444500:intron 25.0%
!!! ATTTGGAAATTTTGGAGAAT+TGG - tig0030733:619-638 Msa1444500:intron 25.0%
! TTTGATGGAATTATGAATGT+TGG - tig0030733:697-716 Msa1444500:intron 25.0%
!!! ACATTGATAATTGTTGACTT+AGG - tig0030733:822-841 Msa1444500:intron 25.0%
!!! CATTGATAATTGTTGACTTA+GGG - tig0030733:823-842 Msa1444500:intron 25.0%
!!! TAGTTGTGAGAATGTTTTAA+AGG - tig0030733:878-897 Msa1444500:intron 25.0%
!!! AGTTGTGAGAATGTTTTAAA+GGG - tig0030733:879-898 Msa1444500:intron 25.0%
!!! TGTTTTTTCATAAGTTATCG+TGG + tig0030733:965-984 None:intergenic 25.0%
! ATGCAATCATATTTGCATAA+AGG + tig0030733:1191-1210 None:intergenic 25.0%
!! TAAAACCCATGTATGAATTT+TGG - tig0030733:1291-1310 Msa1444500:intron 25.0%
! AACATCCAAAATTCATACAT+GGG + tig0030733:1299-1318 None:intergenic 25.0%
! TCACATAAATTTACAATCAC+AGG + tig0030733:1407-1426 None:intergenic 25.0%
!!! ATAGCTGTTATTTTGACAAT+TGG + tig0030733:1460-1479 None:intergenic 25.0%
! AATTGTCAAAATAACAGCTA+TGG - tig0030733:1459-1478 Msa1444500:intron 25.0%
! AATCTGAATCCAAAGTAAAA+TGG + tig0030733:1556-1575 None:intergenic 25.0%
!!! CGTAACTTTGTTTTCATTAA+TGG + tig0030733:1853-1872 None:intergenic 25.0%
!! TAACATGAACAATGTCTTTT+TGG - tig0030733:1977-1996 Msa1444500:CDS 25.0%
!!! TGTCTTTTTGGAGAATTATT+TGG - tig0030733:1989-2008 Msa1444500:CDS 25.0%
GGTTGAAGTGAAATTGATAA+GGG + tig0030733:180-199 None:intergenic 30.0%
TGGTTGAAGTGAAATTGATA+AGG + tig0030733:181-200 None:intergenic 30.0%
ACAAGTGCATAGTGATAAAT+GGG + tig0030733:220-239 None:intergenic 30.0%
AACAAGTGCATAGTGATAAA+TGG + tig0030733:221-240 None:intergenic 30.0%
! AAGTTGGTTAAAGTTGTTTG+AGG + tig0030733:279-298 None:intergenic 30.0%
!!! TGTTGATTCAGCTGAAATTT+TGG - tig0030733:392-411 Msa1444500:intron 30.0%
!! AATTTTGGAGGAGAAGATTT+TGG - tig0030733:407-426 Msa1444500:intron 30.0%
TAAGGCTAAAGGATTGTATT+TGG - tig0030733:602-621 Msa1444500:intron 30.0%
AATATGATTGCATGTTGACA+TGG - tig0030733:1198-1217 Msa1444500:intron 30.0%
CAACATCCAAAATTCATACA+TGG + tig0030733:1300-1319 None:intergenic 30.0%
TTGAGCCTTAGTATGTATTT+CGG - tig0030733:1374-1393 Msa1444500:intron 30.0%
TTACTTTGGATTCAGATTGA+AGG - tig0030733:1558-1577 Msa1444500:CDS 30.0%
! GGTAAATTGATTTCATGACA+TGG + tig0030733:1686-1705 None:intergenic 30.0%
TGTCATGAAATCAATTTACC+AGG - tig0030733:1686-1705 Msa1444500:CDS 30.0%
! TGTATTTGAAATGCTGAACA+AGG - tig0030733:1815-1834 Msa1444500:CDS 30.0%
TAATGAAAACAAAGTTACGG+AGG - tig0030733:1854-1873 Msa1444500:CDS 30.0%
GGTTGAAGTGAAATTGATAA+GGG + tig0030733:180-199 None:intergenic 30.0%
TGGTTGAAGTGAAATTGATA+AGG + tig0030733:181-200 None:intergenic 30.0%
ACAAGTGCATAGTGATAAAT+GGG + tig0030733:220-239 None:intergenic 30.0%
AACAAGTGCATAGTGATAAA+TGG + tig0030733:221-240 None:intergenic 30.0%
! AAGTTGGTTAAAGTTGTTTG+AGG + tig0030733:279-298 None:intergenic 30.0%
!!! TGTTGATTCAGCTGAAATTT+TGG - tig0030733:392-411 Msa1444500:intron 30.0%
!! AATTTTGGAGGAGAAGATTT+TGG - tig0030733:407-426 Msa1444500:intron 30.0%
TAAGGCTAAAGGATTGTATT+TGG - tig0030733:602-621 Msa1444500:intron 30.0%
AATATGATTGCATGTTGACA+TGG - tig0030733:1198-1217 Msa1444500:intron 30.0%
CAACATCCAAAATTCATACA+TGG + tig0030733:1300-1319 None:intergenic 30.0%
TTGAGCCTTAGTATGTATTT+CGG - tig0030733:1374-1393 Msa1444500:intron 30.0%
TTACTTTGGATTCAGATTGA+AGG - tig0030733:1558-1577 Msa1444500:CDS 30.0%
! GGTAAATTGATTTCATGACA+TGG + tig0030733:1686-1705 None:intergenic 30.0%
TGTCATGAAATCAATTTACC+AGG - tig0030733:1686-1705 Msa1444500:CDS 30.0%
! TGTATTTGAAATGCTGAACA+AGG - tig0030733:1815-1834 Msa1444500:CDS 30.0%
TAATGAAAACAAAGTTACGG+AGG - tig0030733:1854-1873 Msa1444500:CDS 30.0%
!! AAAATTGTGGAGGGTGTTAA+TGG + tig0030733:252-271 None:intergenic 35.0%
! TGTTTGAGGTGAGAAAATTG+TGG + tig0030733:265-284 None:intergenic 35.0%
ATTTCAGCTGAATCAACAGA+AGG + tig0030733:390-409 None:intergenic 35.0%
! TGATTCAGCTGAAATTTTGG+AGG - tig0030733:395-414 Msa1444500:intron 35.0%
GAAGGATTCAAGAAATGTTG+AGG - tig0030733:431-450 Msa1444500:intron 35.0%
AAATGTTGAGGCTCTTAAAG+TGG - tig0030733:443-462 Msa1444500:intron 35.0%
CTCTTAAAGTGGTTGTGTAT+GGG - tig0030733:454-473 Msa1444500:intron 35.0%
TGGTTGTGTATGGGAAAATT+AGG - tig0030733:463-482 Msa1444500:intron 35.0%
TGTATGGGAAAATTAGGAGA+GGG - tig0030733:469-488 Msa1444500:CDS 35.0%
TGCATTGTGTTATGAGACAA+TGG - tig0030733:569-588 Msa1444500:intron 35.0%
GCATTGTGTTATGAGACAAT+GGG - tig0030733:570-589 Msa1444500:intron 35.0%
CATTGTGTTATGAGACAATG+GGG - tig0030733:571-590 Msa1444500:intron 35.0%
! ATGAAGAGCTCTAACAAAAG+AGG + tig0030733:645-664 None:intergenic 35.0%
! AAACAAGTTGTGTTGCTGAT+TGG - tig0030733:1089-1108 Msa1444500:intron 35.0%
! GATTGGTAATCATGGCTATT+AGG - tig0030733:1106-1125 Msa1444500:intron 35.0%
TGAGCCTTAGTATGTATTTC+GGG - tig0030733:1375-1394 Msa1444500:intron 35.0%
TCTTCCCGAAATACATACTA+AGG + tig0030733:1382-1401 None:intergenic 35.0%
TTAGTATGTATTTCGGGAAG+AGG - tig0030733:1381-1400 Msa1444500:intron 35.0%
! AACTGTGCAGTGTTGTTAAA+TGG - tig0030733:1487-1506 Msa1444500:CDS 35.0%
! TGAACACCACCATTTTACTT+TGG - tig0030733:1544-1563 Msa1444500:CDS 35.0%
CTGAATCCAAAGTAAAATGG+TGG + tig0030733:1553-1572 None:intergenic 35.0%
TTTGCTAGATGCTTCTTTGA+CGG - tig0030733:1584-1603 Msa1444500:CDS 35.0%
!!! ACTATTTTGACGGCATTTTG+TGG + tig0030733:1649-1668 None:intergenic 35.0%
AACAAACAAATTGAGTGTCC+TGG + tig0030733:1707-1726 None:intergenic 35.0%
! AGTGATACTCTCTTTTCTAC+AGG - tig0030733:1752-1771 Msa1444500:CDS 35.0%
! ACTCTCTTTTCTACAGGTTT+TGG - tig0030733:1758-1777 Msa1444500:CDS 35.0%
!!! TTTTCTACAGGTTTTGGCTA+TGG - tig0030733:1764-1783 Msa1444500:CDS 35.0%
GTGATGCACAAAAACAATGA+GGG - tig0030733:1786-1805 Msa1444500:CDS 35.0%
TTCAGCATTTCAAATACAGC+AGG + tig0030733:1813-1832 None:intergenic 35.0%
TTACGGAGGAGAGAAATATA+AGG - tig0030733:1868-1887 Msa1444500:CDS 35.0%
TTGCACAAATGTGTTGTAAC+AGG - tig0030733:1898-1917 Msa1444500:CDS 35.0%
AACTCGTAGTAGATAAGCAA+AGG + tig0030733:1951-1970 None:intergenic 35.0%
ATAACATATGTGTGCTTTGC+AGG - tig0030733:2017-2036 Msa1444500:CDS 35.0%
TAACATATGTGTGCTTTGCA+GGG - tig0030733:2018-2037 Msa1444500:CDS 35.0%
!! AAAATTGTGGAGGGTGTTAA+TGG + tig0030733:252-271 None:intergenic 35.0%
! TGTTTGAGGTGAGAAAATTG+TGG + tig0030733:265-284 None:intergenic 35.0%
ATTTCAGCTGAATCAACAGA+AGG + tig0030733:390-409 None:intergenic 35.0%
! TGATTCAGCTGAAATTTTGG+AGG - tig0030733:395-414 Msa1444500:intron 35.0%
GAAGGATTCAAGAAATGTTG+AGG - tig0030733:431-450 Msa1444500:intron 35.0%
AAATGTTGAGGCTCTTAAAG+TGG - tig0030733:443-462 Msa1444500:intron 35.0%
CTCTTAAAGTGGTTGTGTAT+GGG - tig0030733:454-473 Msa1444500:intron 35.0%
TGGTTGTGTATGGGAAAATT+AGG - tig0030733:463-482 Msa1444500:intron 35.0%
TGTATGGGAAAATTAGGAGA+GGG - tig0030733:469-488 Msa1444500:CDS 35.0%
TGCATTGTGTTATGAGACAA+TGG - tig0030733:569-588 Msa1444500:intron 35.0%
GCATTGTGTTATGAGACAAT+GGG - tig0030733:570-589 Msa1444500:intron 35.0%
CATTGTGTTATGAGACAATG+GGG - tig0030733:571-590 Msa1444500:intron 35.0%
! ATGAAGAGCTCTAACAAAAG+AGG + tig0030733:645-664 None:intergenic 35.0%
! AAACAAGTTGTGTTGCTGAT+TGG - tig0030733:1089-1108 Msa1444500:intron 35.0%
! GATTGGTAATCATGGCTATT+AGG - tig0030733:1106-1125 Msa1444500:intron 35.0%
TGAGCCTTAGTATGTATTTC+GGG - tig0030733:1375-1394 Msa1444500:intron 35.0%
TCTTCCCGAAATACATACTA+AGG + tig0030733:1382-1401 None:intergenic 35.0%
TTAGTATGTATTTCGGGAAG+AGG - tig0030733:1381-1400 Msa1444500:intron 35.0%
! AACTGTGCAGTGTTGTTAAA+TGG - tig0030733:1487-1506 Msa1444500:CDS 35.0%
! TGAACACCACCATTTTACTT+TGG - tig0030733:1544-1563 Msa1444500:CDS 35.0%
CTGAATCCAAAGTAAAATGG+TGG + tig0030733:1553-1572 None:intergenic 35.0%
TTTGCTAGATGCTTCTTTGA+CGG - tig0030733:1584-1603 Msa1444500:CDS 35.0%
!!! ACTATTTTGACGGCATTTTG+TGG + tig0030733:1649-1668 None:intergenic 35.0%
AACAAACAAATTGAGTGTCC+TGG + tig0030733:1707-1726 None:intergenic 35.0%
! AGTGATACTCTCTTTTCTAC+AGG - tig0030733:1752-1771 Msa1444500:CDS 35.0%
! ACTCTCTTTTCTACAGGTTT+TGG - tig0030733:1758-1777 Msa1444500:CDS 35.0%
!!! TTTTCTACAGGTTTTGGCTA+TGG - tig0030733:1764-1783 Msa1444500:CDS 35.0%
GTGATGCACAAAAACAATGA+GGG - tig0030733:1786-1805 Msa1444500:CDS 35.0%
TTCAGCATTTCAAATACAGC+AGG + tig0030733:1813-1832 None:intergenic 35.0%
TTACGGAGGAGAGAAATATA+AGG - tig0030733:1868-1887 Msa1444500:CDS 35.0%
TTGCACAAATGTGTTGTAAC+AGG - tig0030733:1898-1917 Msa1444500:CDS 35.0%
AACTCGTAGTAGATAAGCAA+AGG + tig0030733:1951-1970 None:intergenic 35.0%
ATAACATATGTGTGCTTTGC+AGG - tig0030733:2017-2036 Msa1444500:CDS 35.0%
TAACATATGTGTGCTTTGCA+GGG - tig0030733:2018-2037 Msa1444500:CDS 35.0%
GAGATATGGTTTGAACTCTG+AGG + tig0030733:115-134 None:intergenic 40.0%
ACGAATTCGTGGCAAAAGAA+GGG + tig0030733:145-164 None:intergenic 40.0%
TACGAATTCGTGGCAAAAGA+AGG + tig0030733:146-165 None:intergenic 40.0%
TTGTTGCAGATACGAATTCG+TGG + tig0030733:156-175 None:intergenic 40.0%
! TGGGTAGCACGAAATTTTGA+TGG + tig0030733:201-220 None:intergenic 40.0%
TGAGGTGAGAAAATTGTGGA+GGG + tig0030733:261-280 None:intergenic 40.0%
TTGAGGTGAGAAAATTGTGG+AGG + tig0030733:262-281 None:intergenic 40.0%
!! AGGTACTGAAACTGCAAAAG+CGG + tig0030733:370-389 None:intergenic 40.0%
GCTCTTAAAGTGGTTGTGTA+TGG - tig0030733:453-472 Msa1444500:intron 40.0%
GTGTATGGGAAAATTAGGAG+AGG - tig0030733:468-487 Msa1444500:CDS 40.0%
AAGCTGAGAAGTTTGTGAAG+AGG - tig0030733:502-521 Msa1444500:intron 40.0%
! TGTGAAGAGGTTGATTGATG+AGG - tig0030733:515-534 Msa1444500:intron 40.0%
GATTGATGAGGAACCAAATG+AGG - tig0030733:527-546 Msa1444500:intron 40.0%
! GACAATGGGGTATTTGAGTA+AGG - tig0030733:584-603 Msa1444500:intron 40.0%
GGGTATTTGAGTAAGGCTAA+AGG - tig0030733:591-610 Msa1444500:intron 40.0%
!! TTGTTGACTTAGGGTCTGTT+TGG - tig0030733:832-851 Msa1444500:intron 40.0%
AAGTTATCGTGGAGAGCTTA+TGG + tig0030733:954-973 None:intergenic 40.0%
! GTGTTGCTGATTGGTAATCA+TGG - tig0030733:1098-1117 Msa1444500:intron 40.0%
CTTTGGATTCAGATTGAAGG+TGG - tig0030733:1561-1580 Msa1444500:CDS 40.0%
GGTGATGCACAAAAACAATG+AGG - tig0030733:1785-1804 Msa1444500:CDS 40.0%
GAGATATGGTTTGAACTCTG+AGG + tig0030733:115-134 None:intergenic 40.0%
ACGAATTCGTGGCAAAAGAA+GGG + tig0030733:145-164 None:intergenic 40.0%
TACGAATTCGTGGCAAAAGA+AGG + tig0030733:146-165 None:intergenic 40.0%
TTGTTGCAGATACGAATTCG+TGG + tig0030733:156-175 None:intergenic 40.0%
! TGGGTAGCACGAAATTTTGA+TGG + tig0030733:201-220 None:intergenic 40.0%
TGAGGTGAGAAAATTGTGGA+GGG + tig0030733:261-280 None:intergenic 40.0%
TTGAGGTGAGAAAATTGTGG+AGG + tig0030733:262-281 None:intergenic 40.0%
!! AGGTACTGAAACTGCAAAAG+CGG + tig0030733:370-389 None:intergenic 40.0%
GCTCTTAAAGTGGTTGTGTA+TGG - tig0030733:453-472 Msa1444500:intron 40.0%
GTGTATGGGAAAATTAGGAG+AGG - tig0030733:468-487 Msa1444500:CDS 40.0%
AAGCTGAGAAGTTTGTGAAG+AGG - tig0030733:502-521 Msa1444500:intron 40.0%
! TGTGAAGAGGTTGATTGATG+AGG - tig0030733:515-534 Msa1444500:intron 40.0%
GATTGATGAGGAACCAAATG+AGG - tig0030733:527-546 Msa1444500:intron 40.0%
! GACAATGGGGTATTTGAGTA+AGG - tig0030733:584-603 Msa1444500:intron 40.0%
GGGTATTTGAGTAAGGCTAA+AGG - tig0030733:591-610 Msa1444500:intron 40.0%
!! TTGTTGACTTAGGGTCTGTT+TGG - tig0030733:832-851 Msa1444500:intron 40.0%
AAGTTATCGTGGAGAGCTTA+TGG + tig0030733:954-973 None:intergenic 40.0%
! GTGTTGCTGATTGGTAATCA+TGG - tig0030733:1098-1117 Msa1444500:intron 40.0%
CTTTGGATTCAGATTGAAGG+TGG - tig0030733:1561-1580 Msa1444500:CDS 40.0%
GGTGATGCACAAAAACAATG+AGG - tig0030733:1785-1804 Msa1444500:CDS 40.0%
AGAAGGGAATTGGGGAGATA+TGG + tig0030733:129-148 None:intergenic 45.0%
GTGGCAAAAGAAGGGAATTG+GGG + tig0030733:137-156 None:intergenic 45.0%
CGTGGCAAAAGAAGGGAATT+GGG + tig0030733:138-157 None:intergenic 45.0%
TCGTGGCAAAAGAAGGGAAT+TGG + tig0030733:139-158 None:intergenic 45.0%
! GGTACTGAAACTGCAAAAGC+GGG + tig0030733:369-388 None:intergenic 45.0%
!! GGAGGAGAAGATTTTGGAGA+AGG - tig0030733:413-432 Msa1444500:intron 45.0%
AGGAACCAAATGAGGTTGAG+TGG - tig0030733:535-554 Msa1444500:intron 45.0%
AACCAAATGAGGTTGAGTGG+AGG - tig0030733:538-557 Msa1444500:intron 45.0%
GATGAATATTAGACGGCGCT+AGG - tig0030733:1425-1444 Msa1444500:intron 45.0%
CTATGACGCTTGTCAAACAC+CGG + tig0030733:1524-1543 None:intergenic 45.0%
! GCTTCTTTGACGGCATTTTG+TGG - tig0030733:1594-1613 Msa1444500:CDS 45.0%
AGAAGGGAATTGGGGAGATA+TGG + tig0030733:129-148 None:intergenic 45.0%
GTGGCAAAAGAAGGGAATTG+GGG + tig0030733:137-156 None:intergenic 45.0%
CGTGGCAAAAGAAGGGAATT+GGG + tig0030733:138-157 None:intergenic 45.0%
TCGTGGCAAAAGAAGGGAAT+TGG + tig0030733:139-158 None:intergenic 45.0%
! GGTACTGAAACTGCAAAAGC+GGG + tig0030733:369-388 None:intergenic 45.0%
!! GGAGGAGAAGATTTTGGAGA+AGG - tig0030733:413-432 Msa1444500:intron 45.0%
AGGAACCAAATGAGGTTGAG+TGG - tig0030733:535-554 Msa1444500:intron 45.0%
AACCAAATGAGGTTGAGTGG+AGG - tig0030733:538-557 Msa1444500:intron 45.0%
GATGAATATTAGACGGCGCT+AGG - tig0030733:1425-1444 Msa1444500:intron 45.0%
CTATGACGCTTGTCAAACAC+CGG + tig0030733:1524-1543 None:intergenic 45.0%
! GCTTCTTTGACGGCATTTTG+TGG - tig0030733:1594-1613 Msa1444500:CDS 45.0%
! CTCTGAGGAGATGAAGAGAG+TGG + tig0030733:100-119 None:intergenic 50.0%
!! TGGAGGGTGTTAATGGAGTG+CGG + tig0030733:245-264 None:intergenic 50.0%
AGCCTCCACTCAACCTCATT+TGG + tig0030733:543-562 None:intergenic 50.0%
CATATGTGTGCTTTGCAGGG+TGG - tig0030733:2021-2040 Msa1444500:CDS 50.0%
! CTCTGAGGAGATGAAGAGAG+TGG + tig0030733:100-119 None:intergenic 50.0%
!! TGGAGGGTGTTAATGGAGTG+CGG + tig0030733:245-264 None:intergenic 50.0%
AGCCTCCACTCAACCTCATT+TGG + tig0030733:543-562 None:intergenic 50.0%
CATATGTGTGCTTTGCAGGG+TGG - tig0030733:2021-2040 Msa1444500:CDS 50.0%
!! GGAGGGTGTTAATGGAGTGC+GGG + tig0030733:244-263 None:intergenic 55.0%
TTAAATGGCGACGCCGTGAC+CGG - tig0030733:1502-1521 Msa1444500:CDS 55.0%
CGCTTGTCAAACACCGGTCA+CGG + tig0030733:1518-1537 None:intergenic 55.0%
GTGCTTTGCAGGGTGGTGAT+TGG - tig0030733:2028-2047 Msa1444500:CDS 55.0%
CTTTGCAGGGTGGTGATTGG+AGG - tig0030733:2031-2050 Msa1444500:CDS 55.0%
!! GGAGGGTGTTAATGGAGTGC+GGG + tig0030733:244-263 None:intergenic 55.0%
TTAAATGGCGACGCCGTGAC+CGG - tig0030733:1502-1521 Msa1444500:CDS 55.0%
CGCTTGTCAAACACCGGTCA+CGG + tig0030733:1518-1537 None:intergenic 55.0%
GTGCTTTGCAGGGTGGTGAT+TGG - tig0030733:2028-2047 Msa1444500:CDS 55.0%
CTTTGCAGGGTGGTGATTGG+AGG - tig0030733:2031-2050 Msa1444500:CDS 55.0%
TGCAGGGTGGTGATTGGAGG+AGG - tig0030733:2034-2053 Msa1444500:CDS 60.0%
GCAGGGTGGTGATTGGAGGA+GGG - tig0030733:2035-2054 Msa1444500:CDS 60.0%
TGCAGGGTGGTGATTGGAGG+AGG - tig0030733:2034-2053 Msa1444500:CDS 60.0%
GCAGGGTGGTGATTGGAGGA+GGG - tig0030733:2035-2054 Msa1444500:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0030733 gene 57 2081 57 ID=Msa1444500;Name=Msa1444500
tig0030733 mRNA 57 2081 57 ID=Msa1444500-mRNA-1;Parent=Msa1444500;Name=Msa1444500-mRNA-1;_AED=0.11;_eAED=0.16;_QI=21|0|0.25|0.75|0.33|0.75|4|0|268
tig0030733 exon 57 99 57 ID=Msa1444500-mRNA-1:exon:14524;Parent=Msa1444500-mRNA-1
tig0030733 exon 219 364 219 ID=Msa1444500-mRNA-1:exon:14523;Parent=Msa1444500-mRNA-1
tig0030733 exon 467 497 467 ID=Msa1444500-mRNA-1:exon:14522;Parent=Msa1444500-mRNA-1
tig0030733 exon 1474 2081 1474 ID=Msa1444500-mRNA-1:exon:14521;Parent=Msa1444500-mRNA-1
tig0030733 five_prime_UTR 2061 2081 2061 ID=Msa1444500-mRNA-1:five_prime_utr;Parent=Msa1444500-mRNA-1
tig0030733 CDS 1474 2060 1474 ID=Msa1444500-mRNA-1:cds;Parent=Msa1444500-mRNA-1
tig0030733 CDS 467 497 467 ID=Msa1444500-mRNA-1:cds;Parent=Msa1444500-mRNA-1
tig0030733 CDS 219 364 219 ID=Msa1444500-mRNA-1:cds;Parent=Msa1444500-mRNA-1
tig0030733 CDS 57 99 57 ID=Msa1444500-mRNA-1:cds;Parent=Msa1444500-mRNA-1
Gene Sequence

>Msa1444500

ATGGCTTCTACTGCAACAACCACTCTCTTCATCTCCTCAGAGTTCAAACCATATCTCCCCAATTCCCTTCTTTTGCCACGAATTCGTATCTGCAACAAACCCTTATCAATTTCACTTCAACCATCAAAATTTCGTGCTACCCATTTATCACTATGCACTTGTTCCCGCACTCCATTAACACCCTCCACAATTTTCTCACCTCAAACAACTTTAACCAACTTCATTTCACAAAAAGTTTCATTTTTTCTCATTGGGTCGTTCATCTTCATCGCTTACTTCAGCAGAAAACCCGCTTTTGCAGTTTCAGTACCTTCTGTTGATTCAGCTGAAATTTTGGAGGAGAAGATTTTGGAGAAGGATTCAAGAAATGTTGAGGCTCTTAAAGTGGTTGTGTATGGGAAAATTAGGAGAGGGAAGTGTAAAGAAGCTGAGAAGTTTGTGAAGAGGTTGATTGATGAGGAACCAAATGAGGTTGAGTGGAGGCTTTTGCTTGCATTGTGTTATGAGACAATGGGGTATTTGAGTAAGGCTAAAGGATTGTATTTGGAAATTTTGGAGAATTGGCCTCTTTTGTTAGAGCTCTTCATTATCACCACAAAATGCCGTCAAAATAGTAATGTTTTGGCTATGGTGATGCACAAAAACAATGAGGGTCCTGCTGTATTTGAAATGCTGAACAAGGCTCTAGAGTTAGCCATTAATGAAAACAAAGTTACGGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGTGTTGTAACAGGGTGGTGATTGGAGGAGGGCTTGAAAAGCTGTCAAGATTTTGA

Protein sequence

>Msa1444500

MASTATTTLFISSEFKPYLPNSLLLPRIRICNKPLSISLQPSKFRATHLSLCTCSRTPLTPSTIFSPQTTLTNFISQKVSFFLIGSFIFIAYFSRKPAFAVSVPSVDSAEILEEKILEKDSRNVEALKVVVYGKIRRGKCKEAEKFVKRLIDEEPNEVEWRLLLALCYETMGYLSKAKGLYLEILENWPLLLELFIITTKCRQNSNVLAMVMHKNNEGPAVFEMLNKALELAINENKVTEERNIRILIAQMCCNRVVIGGGLEKLSRF*