AlfalfaGEDB | Msa1444690

M. sativa cultivar zhongmu-4 / Msa1444690

KEGG: K02113
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542
PFAM: PF00213.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444690	sp\|Q02758\|ATPD_PEA	77.381	252	51	2	1	248	1	250	2.94e-124	356

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444690	G7JLC6	95.968	248	10	0	1	248	1	248	7.78e-152	432

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa1444690	0.852312	5.012946e-61	-8.615850e-47
Msa0000800	Msa1444690	-0.849873	2.444245e-60	-8.615850e-47
Msa0001040	Msa1444690	0.829866	4.049611e-55	-8.615850e-47
Msa0001420	Msa1444690	0.800021	1.752235e-48	-8.615850e-47
Msa0001510	Msa1444690	0.922501	9.063769e-89	-8.615850e-47
Msa0001540	Msa1444690	0.835834	1.332508e-56	-8.615850e-47
Msa0001550	Msa1444690	0.870335	1.577098e-66	-8.615850e-47
Msa0002110	Msa1444690	0.921745	2.411129e-88	-8.615850e-47
Msa0002690	Msa1444690	0.954419	3.087028e-112	-8.615850e-47
Msa0002700	Msa1444690	0.950988	5.250469e-109	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444690	MtrunA17_Chr4g0057421	95.968	248	10	0	1	248	1	248	1.50e-155	432
Msa1444690	MtrunA17_Chr7g0275981	28.111	217	129	9	6	215	29	225	2.33e-13	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444690	AT4G09650.1	55.600	250	92	3	1	248	1	233	4.90e-90	266

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Find 68 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAACCCCGCCGCAC+CGG	0.470667	tig0030801:-11767	Msa1444690:CDS
AAACCCCGCCGCACCGGCGG+TGG	0.420052	tig0030801:-11761	Msa1444690:CDS
AACCGACACAGAGCTTGTTG+TGG	0.631106	tig0030801:-11414	Msa1444690:CDS
AACTGCTCTTGATCCAAGTT+TGG	0.310216	tig0030801:-11300	Msa1444690:CDS
AATTGCTGCTCAACTTGATT+TGG	0.271511	tig0030801:-11201	Msa1444690:CDS
ACCAAACCCCGCCGCACCGG+CGG	0.521926	tig0030801:-11764	Msa1444690:CDS
ACCGCCGGTGCGGCGGGGTT+TGG	0.319431	tig0030801:+11763	None:intergenic
ACCGTCAGGTATGGGAATTC+TGG	0.172359	tig0030801:-11266	Msa1444690:CDS
AGAAATAGTCGAACACCTTG+GGG	0.687282	tig0030801:+11606	None:intergenic
AGAACTCTTCACTGACCCCA+AGG	0.615212	tig0030801:-11621	Msa1444690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGTTGGATTTGGCTAAAT+CGG	+	tig0030801:11404-11423	None:intergenic	35.0%
AAACAGGTTCAAAAACTCAC+AGG	-	tig0030801:11739-11758	Msa1444690:CDS	35.0%
AACAGGTTCAAAAACTCACA+GGG	-	tig0030801:11740-11759	Msa1444690:CDS	35.0%
GAGTGTTAAGAAGAAACTTG+AGG	-	tig0030801:11858-11877	Msa1444690:CDS	35.0%
AATTGCTGCTCAACTTGATT+TGG	-	tig0030801:11882-11901	Msa1444690:CDS	35.0%
ATTGCTGCTCAACTTGATTT+GGG	-	tig0030801:11883-11902	Msa1444690:CDS	35.0%
GTTGTTGGATTTGGCTAAAT+CGG	+	tig0030801:11404-11423	None:intergenic	35.0%
AAACAGGTTCAAAAACTCAC+AGG	-	tig0030801:11739-11758	Msa1444690:CDS	35.0%
AACAGGTTCAAAAACTCACA+GGG	-	tig0030801:11740-11759	Msa1444690:CDS	35.0%
GAGTGTTAAGAAGAAACTTG+AGG	-	tig0030801:11858-11877	Msa1444690:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0030801	gene	11178	11927	11178	ID=Msa1444690;Name=Msa1444690
tig0030801	mRNA	11178	11927	11178	ID=Msa1444690-mRNA-1;Parent=Msa1444690;Name=Msa1444690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|249
tig0030801	exon	11178	11927	11178	ID=Msa1444690-mRNA-1:exon:14624;Parent=Msa1444690-mRNA-1
tig0030801	CDS	11178	11927	11178	ID=Msa1444690-mRNA-1:cds;Parent=Msa1444690-mRNA-1

Gene Sequence

>Msa1444690

ATGGCGTCTCTACAACACACCACAGCCTCAATCTACTCCAAACCAATCCCCAAAACCACAACAACCCTCACCCCAAAACCCATCCTCAACCTCATCCTCTCCCGCACCACCTTCACCTCCCCAAAACTCAAACTCTCCAAAACCAAACCCCGCCGCACCGGCGGTGGCGCACTTGGCTCCACAATGAACTCCCCAGCCGCCGCCAGCTACGCCACCGCATTAGCCGATTTAGCCAAATCCAACAACACCCTCGACGCCACCACCGCTGACATCGACAAAATCGAAGAACTCTTCACTGACCCCAAGGTGTTCGACTATTTCTCCAGCCCAATTATCGAAGACTCCACCAAACGCAAACTCATCGCTGAATTCGCTACTTCCTCTAGCTTCCAACCACACACACAAAACTTCCTCAACCTCCTCATCGAAGCAAACAGAATCGACATCATCCTCGACATCGTGAGAGAATTCGAACTTCATTACAATACTCTAACCGACACAGAGCTTGTTGTGGTGTCTTCAGTGGTGAAATTGGAGTCACAGCATTTGGCGCAGATTGCGAAACAGGTTCAAAAACTCACAGGGGCGAAGAATGTGAGGATTAAAACTGCTCTTGATCCAAGTTTGGTGGCGGGTTTTACCGTCAGGTATGGGAATTCTGGGTCTAAGTTTATTGATATGAGTGTTAAGAAGAAACTTGAGGAAATTGCTGCTCAACTTGATTTGGGTGATATCAAACTTGCTGCATGA

Protein sequence

>Msa1444690

MASLQHTTASIYSKPIPKTTTTLTPKPILNLILSRTTFTSPKLKLSKTKPRRTGGGALGSTMNSPAAASYATALADLAKSNNTLDATTADIDKIEELFTDPKVFDYFSSPIIEDSTKRKLIAEFATSSSFQPHTQNFLNLLIEANRIDIILDIVREFELHYNTLTDTELVVVSSVVKLESQHLAQIAKQVQKLTGAKNVRIKTALDPSLVAGFTVRYGNSGSKFIDMSVKKKLEEIAAQLDLGDIKLAA*