AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444690 MtrunA17_Chr4g0057421 95.968 248 10 0 1 248 1 248 1.50e-155 432
Msa1444690 MtrunA17_Chr7g0275981 28.111 217 129 9 6 215 29 225 2.33e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444690 AT4G09650.1 55.600 250 92 3 1 248 1 233 4.90e-90 266

Find 68 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCGTAGCTGGCGGCGGC+TGG 0.162799 tig0030801:+11713 None:intergenic
GGTGAGGGTTGTTGTGGTTT+TGG 0.164088 tig0030801:+11856 None:intergenic
ACCGTCAGGTATGGGAATTC+TGG 0.172359 tig0030801:-11266 Msa1444690:CDS
ATGAGGTTGAGGATGGGTTT+TGG 0.198972 tig0030801:+11833 None:intergenic
GGTGCGGCGGGGTTTGGTTT+TGG 0.225649 tig0030801:+11769 None:intergenic
TGCGCCACCGCCGGTGCGGC+GGG 0.238128 tig0030801:+11757 None:intergenic
TTGGTGGAGTCTTCGATAAT+TGG 0.238527 tig0030801:+11578 None:intergenic
AATTGCTGCTCAACTTGATT+TGG 0.271511 tig0030801:-11201 Msa1444690:CDS
TGGCGTAGCTGGCGGCGGCT+GGG 0.280536 tig0030801:+11714 None:intergenic
CGCACCGGCGGTGGCGCACT+TGG 0.293106 tig0030801:-11752 Msa1444690:CDS
AACTGCTCTTGATCCAAGTT+TGG 0.310216 tig0030801:-11300 Msa1444690:CDS
ACCGCCGGTGCGGCGGGGTT+TGG 0.319431 tig0030801:+11763 None:intergenic
GAAATTGGAGTCACAGCATT+TGG 0.323866 tig0030801:-11378 Msa1444690:CDS
AGGTGAAGGTGGTGCGGGAG+AGG 0.326146 tig0030801:+11810 None:intergenic
TTTGGCGCAGATTGCGAAAC+AGG 0.327217 tig0030801:-11360 Msa1444690:CDS
GTCGAGGGTGTTGTTGGATT+TGG 0.360334 tig0030801:+11673 None:intergenic
GAGAAATAGTCGAACACCTT+GGG 0.363815 tig0030801:+11605 None:intergenic
ATTGCTGCTCAACTTGATTT+GGG 0.372073 tig0030801:-11200 Msa1444690:CDS
CCGTCAGGTATGGGAATTCT+GGG 0.374285 tig0030801:-11265 Msa1444690:CDS
GGTGTCTTCAGTGGTGAAAT+TGG 0.383089 tig0030801:-11393 Msa1444690:CDS
GGCTAATGCGGTGGCGTAGC+TGG 0.387942 tig0030801:+11703 None:intergenic
AGCGATGAGTTTGCGTTTGG+TGG 0.395419 tig0030801:+11562 None:intergenic
GTAAAACCCGCCACCAAACT+TGG 0.397977 tig0030801:+11287 None:intergenic
TGGTGGAGTCTTCGATAATT+GGG 0.398456 tig0030801:+11579 None:intergenic
GGCGTAGCTGGCGGCGGCTG+GGG 0.401952 tig0030801:+11715 None:intergenic
GTTGTTGGATTTGGCTAAAT+CGG 0.409703 tig0030801:+11682 None:intergenic
AAACCCCGCCGCACCGGCGG+TGG 0.420052 tig0030801:-11761 Msa1444690:CDS
TTCAGCGATGAGTTTGCGTT+TGG 0.420804 tig0030801:+11559 None:intergenic
GGAGAGGATGAGGTTGAGGA+TGG 0.424030 tig0030801:+11826 None:intergenic
GGTGGCGTCGAGGGTGTTGT+TGG 0.434585 tig0030801:+11667 None:intergenic
TGGGGAGGTGAAGGTGGTGC+GGG 0.436035 tig0030801:+11805 None:intergenic
TGCGGTGGCGTAGCTGGCGG+CGG 0.438767 tig0030801:+11709 None:intergenic
TTTGTCGATGTCAGCGGTGG+TGG 0.445558 tig0030801:+11649 None:intergenic
AGGTGGTGCGGGAGAGGATG+AGG 0.454682 tig0030801:+11816 None:intergenic
GTCAGCGGTGGTGGCGTCGA+GGG 0.465818 tig0030801:+11658 None:intergenic
TTGGGGAGGTGAAGGTGGTG+CGG 0.467344 tig0030801:+11804 None:intergenic
GGAGCCAAGTGCGCCACCGC+CGG 0.467362 tig0030801:+11748 None:intergenic
TGCGGGAGAGGATGAGGTTG+AGG 0.468450 tig0030801:+11822 None:intergenic
AAAACCAAACCCCGCCGCAC+CGG 0.470667 tig0030801:-11767 Msa1444690:CDS
CTTGATCCAAGTTTGGTGGC+GGG 0.474377 tig0030801:-11293 Msa1444690:CDS
CAAGTGCGCCACCGCCGGTG+CGG 0.475361 tig0030801:+11753 None:intergenic
TTTGGAGTAGATTGAGGCTG+TGG 0.484590 tig0030801:+11886 None:intergenic
TGCTCTTGATCCAAGTTTGG+TGG 0.485731 tig0030801:-11297 Msa1444690:CDS
GATTGGTTTGGAGTAGATTG+AGG 0.502890 tig0030801:+11880 None:intergenic
TCTTGATCCAAGTTTGGTGG+CGG 0.512469 tig0030801:-11294 Msa1444690:CDS
TTCTGTTTGCTTCGATGAGG+AGG 0.515130 tig0030801:+11489 None:intergenic
TTGCTTCGATGAGGAGGTTG+AGG 0.520100 tig0030801:+11495 None:intergenic
ACCAAACCCCGCCGCACCGG+CGG 0.521926 tig0030801:-11764 Msa1444690:CDS
GCGCCACCGCCGGTGCGGCG+GGG 0.523246 tig0030801:+11758 None:intergenic
GAGAGGATGAGGTTGAGGAT+GGG 0.530175 tig0030801:+11827 None:intergenic
GGAGTCTTCGATAATTGGGC+TGG 0.533217 tig0030801:+11583 None:intergenic
GGAGAAATAGTCGAACACCT+TGG 0.545934 tig0030801:+11604 None:intergenic
CGATTCTGTTTGCTTCGATG+AGG 0.552223 tig0030801:+11486 None:intergenic
TAATGCGGTGGCGTAGCTGG+CGG 0.559050 tig0030801:+11706 None:intergenic
GGCTAAATCGGCTAATGCGG+TGG 0.571556 tig0030801:+11694 None:intergenic
GCTTGTTGTGGTGTCTTCAG+TGG 0.590381 tig0030801:-11402 Msa1444690:CDS
TGTCAGCGGTGGTGGCGTCG+AGG 0.591340 tig0030801:+11657 None:intergenic
GGCGGCTGGGGAGTTCATTG+TGG 0.606376 tig0030801:+11727 None:intergenic
AGAACTCTTCACTGACCCCA+AGG 0.615212 tig0030801:-11621 Msa1444690:CDS
CGAATTCTCTCACGATGTCG+AGG 0.616657 tig0030801:+11456 None:intergenic
TTTGGCTAAATCGGCTAATG+CGG 0.625107 tig0030801:+11691 None:intergenic
AACCGACACAGAGCTTGTTG+TGG 0.631106 tig0030801:-11414 Msa1444690:CDS
TCACAGGGGCGAAGAATGTG+AGG 0.634295 tig0030801:-11328 Msa1444690:CDS
GAGTGTTAAGAAGAAACTTG+AGG 0.637701 tig0030801:-11225 Msa1444690:CDS
CACCACAACAAGCTCTGTGT+CGG 0.640807 tig0030801:+11412 None:intergenic
CCCAGAATTCCCATACCTGA+CGG 0.678407 tig0030801:+11265 None:intergenic
TGTGTGTGGTTGGAAGCTAG+AGG 0.683601 tig0030801:+11526 None:intergenic
AGAAATAGTCGAACACCTTG+GGG 0.687282 tig0030801:+11606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTTGGAGAGTTTGAGTTTT+GGG + tig0030801:11300-11319 None:intergenic 30.0%
!! TTTTGGAGAGTTTGAGTTTT+GGG + tig0030801:11300-11319 None:intergenic 30.0%
!! TTTGGAGAGTTTGAGTTTTG+GGG + tig0030801:11299-11318 None:intergenic 35.0%
!!! GTTTTGGAGAGTTTGAGTTT+TGG + tig0030801:11301-11320 None:intergenic 35.0%
GTTGTTGGATTTGGCTAAAT+CGG + tig0030801:11404-11423 None:intergenic 35.0%
AAACAGGTTCAAAAACTCAC+AGG - tig0030801:11739-11758 Msa1444690:CDS 35.0%
AACAGGTTCAAAAACTCACA+GGG - tig0030801:11740-11759 Msa1444690:CDS 35.0%
GAGTGTTAAGAAGAAACTTG+AGG - tig0030801:11858-11877 Msa1444690:CDS 35.0%
AATTGCTGCTCAACTTGATT+TGG - tig0030801:11882-11901 Msa1444690:CDS 35.0%
ATTGCTGCTCAACTTGATTT+GGG - tig0030801:11883-11902 Msa1444690:CDS 35.0%
!! TTTGGAGAGTTTGAGTTTTG+GGG + tig0030801:11299-11318 None:intergenic 35.0%
!!! GTTTTGGAGAGTTTGAGTTT+TGG + tig0030801:11301-11320 None:intergenic 35.0%
GTTGTTGGATTTGGCTAAAT+CGG + tig0030801:11404-11423 None:intergenic 35.0%
AAACAGGTTCAAAAACTCAC+AGG - tig0030801:11739-11758 Msa1444690:CDS 35.0%
AACAGGTTCAAAAACTCACA+GGG - tig0030801:11740-11759 Msa1444690:CDS 35.0%
GAGTGTTAAGAAGAAACTTG+AGG - tig0030801:11858-11877 Msa1444690:CDS 35.0%
AATTGCTGCTCAACTTGATT+TGG - tig0030801:11882-11901 Msa1444690:CDS 35.0%
ATTGCTGCTCAACTTGATTT+GGG - tig0030801:11883-11902 Msa1444690:CDS 35.0%
!! GATTGGTTTGGAGTAGATTG+AGG + tig0030801:11206-11225 None:intergenic 40.0%
TTTGGCTAAATCGGCTAATG+CGG + tig0030801:11395-11414 None:intergenic 40.0%
! TTCGATTTTGTCGATGTCAG+CGG + tig0030801:11443-11462 None:intergenic 40.0%
AGAAATAGTCGAACACCTTG+GGG + tig0030801:11480-11499 None:intergenic 40.0%
GAGAAATAGTCGAACACCTT+GGG + tig0030801:11481-11500 None:intergenic 40.0%
TGGTGGAGTCTTCGATAATT+GGG + tig0030801:11507-11526 None:intergenic 40.0%
TTGGTGGAGTCTTCGATAAT+TGG + tig0030801:11508-11527 None:intergenic 40.0%
!! TTGAGGAAGTTTTGTGTGTG+TGG + tig0030801:11574-11593 None:intergenic 40.0%
GAAATTGGAGTCACAGCATT+TGG - tig0030801:11705-11724 Msa1444690:CDS 40.0%
ACAGGTTCAAAAACTCACAG+GGG - tig0030801:11741-11760 Msa1444690:CDS 40.0%
AACTGCTCTTGATCCAAGTT+TGG - tig0030801:11783-11802 Msa1444690:CDS 40.0%
!! GATTGGTTTGGAGTAGATTG+AGG + tig0030801:11206-11225 None:intergenic 40.0%
TTTGGCTAAATCGGCTAATG+CGG + tig0030801:11395-11414 None:intergenic 40.0%
! TTCGATTTTGTCGATGTCAG+CGG + tig0030801:11443-11462 None:intergenic 40.0%
AGAAATAGTCGAACACCTTG+GGG + tig0030801:11480-11499 None:intergenic 40.0%
GAGAAATAGTCGAACACCTT+GGG + tig0030801:11481-11500 None:intergenic 40.0%
TGGTGGAGTCTTCGATAATT+GGG + tig0030801:11507-11526 None:intergenic 40.0%
TTGGTGGAGTCTTCGATAAT+TGG + tig0030801:11508-11527 None:intergenic 40.0%
!! TTGAGGAAGTTTTGTGTGTG+TGG + tig0030801:11574-11593 None:intergenic 40.0%
GAAATTGGAGTCACAGCATT+TGG - tig0030801:11705-11724 Msa1444690:CDS 40.0%
ACAGGTTCAAAAACTCACAG+GGG - tig0030801:11741-11760 Msa1444690:CDS 40.0%
AACTGCTCTTGATCCAAGTT+TGG - tig0030801:11783-11802 Msa1444690:CDS 40.0%
! TTTGGAGTAGATTGAGGCTG+TGG + tig0030801:11200-11219 None:intergenic 45.0%
!!! TGTGGTTTTGGGGATTGGTT+TGG + tig0030801:11218-11237 None:intergenic 45.0%
!!! GTTGTTGTGGTTTTGGGGAT+TGG + tig0030801:11223-11242 None:intergenic 45.0%
!! TGAGGGTTGTTGTGGTTTTG+GGG + tig0030801:11228-11247 None:intergenic 45.0%
! GTGAGGGTTGTTGTGGTTTT+GGG + tig0030801:11229-11248 None:intergenic 45.0%
!! TGAGGTTGAGGATGGGTTTT+GGG + tig0030801:11252-11271 None:intergenic 45.0%
!! ATGAGGTTGAGGATGGGTTT+TGG + tig0030801:11253-11272 None:intergenic 45.0%
!!! TTTGAGTTTTGGGGAGGTGA+AGG + tig0030801:11290-11309 None:intergenic 45.0%
GGAGAAATAGTCGAACACCT+TGG + tig0030801:11482-11501 None:intergenic 45.0%
TTCAGCGATGAGTTTGCGTT+TGG + tig0030801:11527-11546 None:intergenic 45.0%
!! GGAAGTTTTGTGTGTGTGGT+TGG + tig0030801:11570-11589 None:intergenic 45.0%
TTCTGTTTGCTTCGATGAGG+AGG + tig0030801:11597-11616 None:intergenic 45.0%
CGATTCTGTTTGCTTCGATG+AGG + tig0030801:11600-11619 None:intergenic 45.0%
GGTGTCTTCAGTGGTGAAAT+TGG - tig0030801:11690-11709 Msa1444690:CDS 45.0%
TGCTCTTGATCCAAGTTTGG+TGG - tig0030801:11786-11805 Msa1444690:CDS 45.0%
! TCTTGATCCAAGTTTGGTGG+CGG - tig0030801:11789-11808 Msa1444690:CDS 45.0%
! TTTGGAGTAGATTGAGGCTG+TGG + tig0030801:11200-11219 None:intergenic 45.0%
!!! TGTGGTTTTGGGGATTGGTT+TGG + tig0030801:11218-11237 None:intergenic 45.0%
!!! GTTGTTGTGGTTTTGGGGAT+TGG + tig0030801:11223-11242 None:intergenic 45.0%
!! TGAGGGTTGTTGTGGTTTTG+GGG + tig0030801:11228-11247 None:intergenic 45.0%
! GTGAGGGTTGTTGTGGTTTT+GGG + tig0030801:11229-11248 None:intergenic 45.0%
!! TGAGGTTGAGGATGGGTTTT+GGG + tig0030801:11252-11271 None:intergenic 45.0%
!! ATGAGGTTGAGGATGGGTTT+TGG + tig0030801:11253-11272 None:intergenic 45.0%
!!! TTTGAGTTTTGGGGAGGTGA+AGG + tig0030801:11290-11309 None:intergenic 45.0%
GGAGAAATAGTCGAACACCT+TGG + tig0030801:11482-11501 None:intergenic 45.0%
TTCAGCGATGAGTTTGCGTT+TGG + tig0030801:11527-11546 None:intergenic 45.0%
!! GGAAGTTTTGTGTGTGTGGT+TGG + tig0030801:11570-11589 None:intergenic 45.0%
TTCTGTTTGCTTCGATGAGG+AGG + tig0030801:11597-11616 None:intergenic 45.0%
CGATTCTGTTTGCTTCGATG+AGG + tig0030801:11600-11619 None:intergenic 45.0%
GGTGTCTTCAGTGGTGAAAT+TGG - tig0030801:11690-11709 Msa1444690:CDS 45.0%
TGCTCTTGATCCAAGTTTGG+TGG - tig0030801:11786-11805 Msa1444690:CDS 45.0%
! TCTTGATCCAAGTTTGGTGG+CGG - tig0030801:11789-11808 Msa1444690:CDS 45.0%
! GGTGAGGGTTGTTGTGGTTT+TGG + tig0030801:11230-11249 None:intergenic 50.0%
!!! TTTTGGGGTGAGGGTTGTTG+TGG + tig0030801:11236-11255 None:intergenic 50.0%
!! GAGGTTGAGGATGGGTTTTG+GGG + tig0030801:11251-11270 None:intergenic 50.0%
GAGAGGATGAGGTTGAGGAT+GGG + tig0030801:11259-11278 None:intergenic 50.0%
!!! GGAGAGTTTGAGTTTTGGGG+AGG + tig0030801:11296-11315 None:intergenic 50.0%
!! GTCGAGGGTGTTGTTGGATT+TGG + tig0030801:11413-11432 None:intergenic 50.0%
! GATTTTGTCGATGTCAGCGG+TGG + tig0030801:11440-11459 None:intergenic 50.0%
AGAACTCTTCACTGACCCCA+AGG - tig0030801:11462-11481 Msa1444690:CDS 50.0%
GGAGTCTTCGATAATTGGGC+TGG + tig0030801:11503-11522 None:intergenic 50.0%
AGCGATGAGTTTGCGTTTGG+TGG + tig0030801:11524-11543 None:intergenic 50.0%
TGTGTGTGGTTGGAAGCTAG+AGG + tig0030801:11560-11579 None:intergenic 50.0%
TTGCTTCGATGAGGAGGTTG+AGG + tig0030801:11591-11610 None:intergenic 50.0%
CGAATTCTCTCACGATGTCG+AGG + tig0030801:11630-11649 None:intergenic 50.0%
!! AACCGACACAGAGCTTGTTG+TGG - tig0030801:11669-11688 Msa1444690:CDS 50.0%
CACCACAACAAGCTCTGTGT+CGG + tig0030801:11674-11693 None:intergenic 50.0%
!! GCTTGTTGTGGTGTCTTCAG+TGG - tig0030801:11681-11700 Msa1444690:CDS 50.0%
TTTGGCGCAGATTGCGAAAC+AGG - tig0030801:11723-11742 Msa1444690:CDS 50.0%
! CTTGATCCAAGTTTGGTGGC+GGG - tig0030801:11790-11809 Msa1444690:CDS 50.0%
GTAAAACCCGCCACCAAACT+TGG + tig0030801:11799-11818 None:intergenic 50.0%
! CGGGTTTTACCGTCAGGTAT+GGG - tig0030801:11809-11828 Msa1444690:CDS 50.0%
ACCGTCAGGTATGGGAATTC+TGG - tig0030801:11817-11836 Msa1444690:CDS 50.0%
CCCAGAATTCCCATACCTGA+CGG + tig0030801:11821-11840 None:intergenic 50.0%
CCGTCAGGTATGGGAATTCT+GGG - tig0030801:11818-11837 Msa1444690:CDS 50.0%
! GGTGAGGGTTGTTGTGGTTT+TGG + tig0030801:11230-11249 None:intergenic 50.0%
!!! TTTTGGGGTGAGGGTTGTTG+TGG + tig0030801:11236-11255 None:intergenic 50.0%
!! GAGGTTGAGGATGGGTTTTG+GGG + tig0030801:11251-11270 None:intergenic 50.0%
GAGAGGATGAGGTTGAGGAT+GGG + tig0030801:11259-11278 None:intergenic 50.0%
!!! GGAGAGTTTGAGTTTTGGGG+AGG + tig0030801:11296-11315 None:intergenic 50.0%
!! GTCGAGGGTGTTGTTGGATT+TGG + tig0030801:11413-11432 None:intergenic 50.0%
! GATTTTGTCGATGTCAGCGG+TGG + tig0030801:11440-11459 None:intergenic 50.0%
AGAACTCTTCACTGACCCCA+AGG - tig0030801:11462-11481 Msa1444690:CDS 50.0%
GGAGTCTTCGATAATTGGGC+TGG + tig0030801:11503-11522 None:intergenic 50.0%
AGCGATGAGTTTGCGTTTGG+TGG + tig0030801:11524-11543 None:intergenic 50.0%
TGTGTGTGGTTGGAAGCTAG+AGG + tig0030801:11560-11579 None:intergenic 50.0%
TTGCTTCGATGAGGAGGTTG+AGG + tig0030801:11591-11610 None:intergenic 50.0%
CGAATTCTCTCACGATGTCG+AGG + tig0030801:11630-11649 None:intergenic 50.0%
!! AACCGACACAGAGCTTGTTG+TGG - tig0030801:11669-11688 Msa1444690:CDS 50.0%
CACCACAACAAGCTCTGTGT+CGG + tig0030801:11674-11693 None:intergenic 50.0%
!! GCTTGTTGTGGTGTCTTCAG+TGG - tig0030801:11681-11700 Msa1444690:CDS 50.0%
TTTGGCGCAGATTGCGAAAC+AGG - tig0030801:11723-11742 Msa1444690:CDS 50.0%
! CTTGATCCAAGTTTGGTGGC+GGG - tig0030801:11790-11809 Msa1444690:CDS 50.0%
GTAAAACCCGCCACCAAACT+TGG + tig0030801:11799-11818 None:intergenic 50.0%
! CGGGTTTTACCGTCAGGTAT+GGG - tig0030801:11809-11828 Msa1444690:CDS 50.0%
ACCGTCAGGTATGGGAATTC+TGG - tig0030801:11817-11836 Msa1444690:CDS 50.0%
CCCAGAATTCCCATACCTGA+CGG + tig0030801:11821-11840 None:intergenic 50.0%
CCGTCAGGTATGGGAATTCT+GGG - tig0030801:11818-11837 Msa1444690:CDS 50.0%
!!! GAGGATGGGTTTTGGGGTGA+GGG + tig0030801:11245-11264 None:intergenic 55.0%
!!! TGAGGATGGGTTTTGGGGTG+AGG + tig0030801:11246-11265 None:intergenic 55.0%
GGAGAGGATGAGGTTGAGGA+TGG + tig0030801:11260-11279 None:intergenic 55.0%
!!! GAGTTTTGGGGAGGTGAAGG+TGG + tig0030801:11287-11306 None:intergenic 55.0%
GGCTAAATCGGCTAATGCGG+TGG + tig0030801:11392-11411 None:intergenic 55.0%
TTTGTCGATGTCAGCGGTGG+TGG + tig0030801:11437-11456 None:intergenic 55.0%
TCACAGGGGCGAAGAATGTG+AGG - tig0030801:11755-11774 Msa1444690:CDS 55.0%
! GCGGGTTTTACCGTCAGGTA+TGG - tig0030801:11808-11827 Msa1444690:CDS 55.0%
!!! GAGGATGGGTTTTGGGGTGA+GGG + tig0030801:11245-11264 None:intergenic 55.0%
!!! TGAGGATGGGTTTTGGGGTG+AGG + tig0030801:11246-11265 None:intergenic 55.0%
GGAGAGGATGAGGTTGAGGA+TGG + tig0030801:11260-11279 None:intergenic 55.0%
!!! GAGTTTTGGGGAGGTGAAGG+TGG + tig0030801:11287-11306 None:intergenic 55.0%
GGCTAAATCGGCTAATGCGG+TGG + tig0030801:11392-11411 None:intergenic 55.0%
TTTGTCGATGTCAGCGGTGG+TGG + tig0030801:11437-11456 None:intergenic 55.0%
TCACAGGGGCGAAGAATGTG+AGG - tig0030801:11755-11774 Msa1444690:CDS 55.0%
! GCGGGTTTTACCGTCAGGTA+TGG - tig0030801:11808-11827 Msa1444690:CDS 55.0%
TGCGGGAGAGGATGAGGTTG+AGG + tig0030801:11264-11283 None:intergenic 60.0%
TTGGGGAGGTGAAGGTGGTG+CGG + tig0030801:11282-11301 None:intergenic 60.0%
AAAACCAAACCCCGCCGCAC+CGG - tig0030801:11316-11335 Msa1444690:CDS 60.0%
TAATGCGGTGGCGTAGCTGG+CGG + tig0030801:11380-11399 None:intergenic 60.0%
!!! TGGTGGCGGGTTTTACCGTC+AGG - tig0030801:11803-11822 Msa1444690:CDS 60.0%
TGCGGGAGAGGATGAGGTTG+AGG + tig0030801:11264-11283 None:intergenic 60.0%
TTGGGGAGGTGAAGGTGGTG+CGG + tig0030801:11282-11301 None:intergenic 60.0%
AAAACCAAACCCCGCCGCAC+CGG - tig0030801:11316-11335 Msa1444690:CDS 60.0%
TAATGCGGTGGCGTAGCTGG+CGG + tig0030801:11380-11399 None:intergenic 60.0%
!!! TGGTGGCGGGTTTTACCGTC+AGG - tig0030801:11803-11822 Msa1444690:CDS 60.0%
AGGTGGTGCGGGAGAGGATG+AGG + tig0030801:11270-11289 None:intergenic 65.0%
AGGTGAAGGTGGTGCGGGAG+AGG + tig0030801:11276-11295 None:intergenic 65.0%
TGGGGAGGTGAAGGTGGTGC+GGG + tig0030801:11281-11300 None:intergenic 65.0%
!! GGTGCGGCGGGGTTTGGTTT+TGG + tig0030801:11317-11336 None:intergenic 65.0%
GGCGGCTGGGGAGTTCATTG+TGG + tig0030801:11359-11378 None:intergenic 65.0%
GGCTAATGCGGTGGCGTAGC+TGG + tig0030801:11383-11402 None:intergenic 65.0%
!! GGTGGCGTCGAGGGTGTTGT+TGG + tig0030801:11419-11438 None:intergenic 65.0%
AGGTGGTGCGGGAGAGGATG+AGG + tig0030801:11270-11289 None:intergenic 65.0%
AGGTGAAGGTGGTGCGGGAG+AGG + tig0030801:11276-11295 None:intergenic 65.0%
TGGGGAGGTGAAGGTGGTGC+GGG + tig0030801:11281-11300 None:intergenic 65.0%
!! GGTGCGGCGGGGTTTGGTTT+TGG + tig0030801:11317-11336 None:intergenic 65.0%
GGCGGCTGGGGAGTTCATTG+TGG + tig0030801:11359-11378 None:intergenic 65.0%
GGCTAATGCGGTGGCGTAGC+TGG + tig0030801:11383-11402 None:intergenic 65.0%
!! GGTGGCGTCGAGGGTGTTGT+TGG + tig0030801:11419-11438 None:intergenic 65.0%
! GTCAGCGGTGGTGGCGTCGA+GGG + tig0030801:11428-11447 None:intergenic 70.0%
! TGTCAGCGGTGGTGGCGTCG+AGG + tig0030801:11429-11448 None:intergenic 70.0%
! GTCAGCGGTGGTGGCGTCGA+GGG + tig0030801:11428-11447 None:intergenic 70.0%
! TGTCAGCGGTGGTGGCGTCG+AGG + tig0030801:11429-11448 None:intergenic 70.0%
ACCAAACCCCGCCGCACCGG+CGG - tig0030801:11319-11338 Msa1444690:CDS 75.0%
CAAGTGCGCCACCGCCGGTG+CGG + tig0030801:11333-11352 None:intergenic 75.0%
GGAGCCAAGTGCGCCACCGC+CGG + tig0030801:11338-11357 None:intergenic 75.0%
TGGCGTAGCTGGCGGCGGCT+GGG + tig0030801:11372-11391 None:intergenic 75.0%
TGCGGTGGCGTAGCTGGCGG+CGG + tig0030801:11377-11396 None:intergenic 75.0%
ACCAAACCCCGCCGCACCGG+CGG - tig0030801:11319-11338 Msa1444690:CDS 75.0%
CAAGTGCGCCACCGCCGGTG+CGG + tig0030801:11333-11352 None:intergenic 75.0%
GGAGCCAAGTGCGCCACCGC+CGG + tig0030801:11338-11357 None:intergenic 75.0%
TGGCGTAGCTGGCGGCGGCT+GGG + tig0030801:11372-11391 None:intergenic 75.0%
TGCGGTGGCGTAGCTGGCGG+CGG + tig0030801:11377-11396 None:intergenic 75.0%
! ACCGCCGGTGCGGCGGGGTT+TGG + tig0030801:11323-11342 None:intergenic 80.0%
!! AAACCCCGCCGCACCGGCGG+TGG - tig0030801:11322-11341 Msa1444690:CDS 80.0%
!! CGCACCGGCGGTGGCGCACT+TGG - tig0030801:11331-11350 Msa1444690:CDS 80.0%
! GGCGTAGCTGGCGGCGGCTG+GGG + tig0030801:11371-11390 None:intergenic 80.0%
! GTGGCGTAGCTGGCGGCGGC+TGG + tig0030801:11373-11392 None:intergenic 80.0%
! ACCGCCGGTGCGGCGGGGTT+TGG + tig0030801:11323-11342 None:intergenic 80.0%
!! AAACCCCGCCGCACCGGCGG+TGG - tig0030801:11322-11341 Msa1444690:CDS 80.0%
!! CGCACCGGCGGTGGCGCACT+TGG - tig0030801:11331-11350 Msa1444690:CDS 80.0%
! GGCGTAGCTGGCGGCGGCTG+GGG + tig0030801:11371-11390 None:intergenic 80.0%
! GTGGCGTAGCTGGCGGCGGC+TGG + tig0030801:11373-11392 None:intergenic 80.0%
! TGCGCCACCGCCGGTGCGGC+GGG + tig0030801:11329-11348 None:intergenic 85.0%
! GTGCGCCACCGCCGGTGCGG+CGG + tig0030801:11330-11349 None:intergenic 85.0%
! TGCGCCACCGCCGGTGCGGC+GGG + tig0030801:11329-11348 None:intergenic 85.0%
! GTGCGCCACCGCCGGTGCGG+CGG + tig0030801:11330-11349 None:intergenic 85.0%
! GCGCCACCGCCGGTGCGGCG+GGG + tig0030801:11328-11347 None:intergenic 90.0%
! GCGCCACCGCCGGTGCGGCG+GGG + tig0030801:11328-11347 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0030801 gene 11178 11927 11178 ID=Msa1444690;Name=Msa1444690
tig0030801 mRNA 11178 11927 11178 ID=Msa1444690-mRNA-1;Parent=Msa1444690;Name=Msa1444690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|249
tig0030801 exon 11178 11927 11178 ID=Msa1444690-mRNA-1:exon:14624;Parent=Msa1444690-mRNA-1
tig0030801 CDS 11178 11927 11178 ID=Msa1444690-mRNA-1:cds;Parent=Msa1444690-mRNA-1
Gene Sequence

>Msa1444690

ATGGCGTCTCTACAACACACCACAGCCTCAATCTACTCCAAACCAATCCCCAAAACCACAACAACCCTCACCCCAAAACCCATCCTCAACCTCATCCTCTCCCGCACCACCTTCACCTCCCCAAAACTCAAACTCTCCAAAACCAAACCCCGCCGCACCGGCGGTGGCGCACTTGGCTCCACAATGAACTCCCCAGCCGCCGCCAGCTACGCCACCGCATTAGCCGATTTAGCCAAATCCAACAACACCCTCGACGCCACCACCGCTGACATCGACAAAATCGAAGAACTCTTCACTGACCCCAAGGTGTTCGACTATTTCTCCAGCCCAATTATCGAAGACTCCACCAAACGCAAACTCATCGCTGAATTCGCTACTTCCTCTAGCTTCCAACCACACACACAAAACTTCCTCAACCTCCTCATCGAAGCAAACAGAATCGACATCATCCTCGACATCGTGAGAGAATTCGAACTTCATTACAATACTCTAACCGACACAGAGCTTGTTGTGGTGTCTTCAGTGGTGAAATTGGAGTCACAGCATTTGGCGCAGATTGCGAAACAGGTTCAAAAACTCACAGGGGCGAAGAATGTGAGGATTAAAACTGCTCTTGATCCAAGTTTGGTGGCGGGTTTTACCGTCAGGTATGGGAATTCTGGGTCTAAGTTTATTGATATGAGTGTTAAGAAGAAACTTGAGGAAATTGCTGCTCAACTTGATTTGGGTGATATCAAACTTGCTGCATGA

Protein sequence

>Msa1444690

MASLQHTTASIYSKPIPKTTTTLTPKPILNLILSRTTFTSPKLKLSKTKPRRTGGGALGSTMNSPAAASYATALADLAKSNNTLDATTADIDKIEELFTDPKVFDYFSSPIIEDSTKRKLIAEFATSSSFQPHTQNFLNLLIEANRIDIILDIVREFELHYNTLTDTELVVVSSVVKLESQHLAQIAKQVQKLTGAKNVRIKTALDPSLVAGFTVRYGNSGSKFIDMSVKKKLEEIAAQLDLGDIKLAA*