AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025440 MtrunA17_Chr7g0243421 97.473 277 7 0 310 586 2 278 0.0 536
Msa1025440 MtrunA17_Chr7g0243411 92.381 315 20 1 1 311 1 315 1.44e-163 469
Msa1025440 MtrunA17_Chr5g0448591 44.914 521 247 5 69 583 64 550 7.64e-145 430
Msa1025440 MtrunA17_Chr2g0328761 41.667 504 236 3 106 578 29 505 3.96e-123 372
Msa1025440 MtrunA17_Chr3g0088471 39.474 532 230 8 106 575 30 531 3.87e-111 343
Msa1025440 MtrunA17_Chr8g0352151 38.095 546 241 4 106 578 29 550 1.97e-108 336
Msa1025440 MtrunA17_Chr8g0352171 41.287 373 195 1 203 575 35 383 2.62e-86 273
Msa1025440 MtrunA17_Chr4g0035751 22.378 572 366 18 35 583 8 524 2.42e-15 79.0
Msa1025440 MtrunA17_Chr4g0035741 22.339 573 356 19 35 573 15 532 4.14e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025440 AT2G38330.1 59.590 537 171 7 57 579 10 514 0.0 561
Msa1025440 AT4G38380.3 46.473 482 225 4 110 586 32 485 1.30e-139 414
Msa1025440 AT4G38380.2 44.106 526 253 6 68 586 66 557 1.52e-139 417
Msa1025440 AT4G38380.1 44.106 526 253 6 68 586 66 557 1.52e-139 417
Msa1025440 AT4G38380.4 47.257 474 217 4 118 586 2 447 2.77e-139 412
Msa1025440 AT4G38380.5 43.954 521 251 5 68 586 66 547 1.08e-138 414
Msa1025440 AT1G51340.1 41.569 510 236 4 107 578 22 507 4.94e-114 349
Msa1025440 AT1G51340.3 41.393 517 240 5 100 578 22 513 7.99e-114 349
Msa1025440 AT1G51340.5 41.393 517 240 5 100 578 22 513 7.99e-114 349
Msa1025440 AT1G51340.2 41.393 517 240 5 100 578 22 513 7.99e-114 349
Msa1025440 AT3G08040.1 39.338 544 259 6 78 578 2 517 1.14e-103 323
Msa1025440 AT3G08040.2 40.306 392 207 4 187 578 49 413 2.13e-86 275
Msa1025440 AT1G51340.4 40.609 394 171 4 100 455 22 390 1.44e-77 251
Msa1025440 AT2G21340.1 25.000 468 286 14 121 573 125 542 4.10e-13 72.4
Msa1025440 AT2G21340.2 24.786 468 284 14 121 573 125 539 4.26e-12 69.3

Find 161 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCAACCATTTCTGAAATT+TGG 0.102515 7_1:-56003911 None:intergenic
TTCACTAACCAATTGGTTAA+AGG 0.183978 7_1:+56010608 Msa1025440:three_prime_UTR
GGCAGGATTGTTTCTCTTCA+TGG 0.193842 7_1:+56009873 Msa1025440:CDS
GTTATCGATGGCCTTTATTA+TGG 0.215289 7_1:+56009607 Msa1025440:CDS
TGTTGGGAAATTTGTTTATT+AGG 0.215321 7_1:+56010456 Msa1025440:three_prime_UTR
GAACTTTCTTATTGTGATAT+TGG 0.217384 7_1:+56006601 Msa1025440:CDS
ATACATAAAAGTCTCTTTCT+AGG 0.226371 7_1:+56010558 Msa1025440:three_prime_UTR
GAAGAAGAGAAGAGGGTTTA+GGG 0.237873 7_1:-56003889 None:intergenic
AAGTTTGTGGTTAGTGTAGA+TGG 0.242935 7_1:-56003764 None:intergenic
GGAAGAAGAGAAGAGGGTTT+AGG 0.246870 7_1:-56003890 None:intergenic
ATCAAATTTGCATGGAAGTT+TGG 0.258811 7_1:+56007908 Msa1025440:CDS
TAGTTGGACTTCCTGGAGTC+TGG 0.274567 7_1:+56009851 Msa1025440:CDS
TAATAGCTTTCATTCTTCTA+TGG 0.277796 7_1:+56006802 Msa1025440:CDS
CCACATGTGCAGTTTGTTGC+TGG 0.277965 7_1:+56009556 Msa1025440:intron
TTGATATTTCTTTGTGGTCT+TGG 0.281737 7_1:+56006632 Msa1025440:CDS
AAATGAAGATATGGTTTGTT+TGG 0.282969 7_1:+56003607 None:intergenic
CATTTCTAACAGATTGGTTT+AGG 0.283621 7_1:+56009046 Msa1025440:intron
GCTCCAGTAGTTGGACTTCC+TGG 0.284213 7_1:+56009844 Msa1025440:CDS
TAGCACAGACTCAGAAGTTT+TGG 0.294378 7_1:+56009129 Msa1025440:CDS
CTTGCCTGCTGCTGTTGCCT+TGG 0.300914 7_1:+56003973 Msa1025440:CDS
TTAGCACTTGCTGCAGGTCT+TGG 0.305294 7_1:+56005062 Msa1025440:CDS
TCTGTAAGAGCATGGGGATT+TGG 0.318376 7_1:-56010250 None:intergenic
TCCGGTCAAATTGAGGAAAA+TGG 0.321042 7_1:+56004865 Msa1025440:CDS
CTTCTTCCAAATTTCAGAAA+TGG 0.328879 7_1:+56003905 Msa1025440:CDS
TGATGGCCTGCCATAGGTAT+AGG 0.335543 7_1:-56007889 None:intergenic
GTAAGTTATGAGTAAGTAAA+TGG 0.342679 7_1:-56006044 None:intergenic
TTTCTTACATTGAGGGCCTT+TGG 0.345288 7_1:+56005904 Msa1025440:CDS
TTATCGATGGCCTTTATTAT+GGG 0.347055 7_1:+56009608 Msa1025440:CDS
AAACTTCCATGCAAATTTGA+TGG 0.347475 7_1:-56007906 None:intergenic
CCACAAAGAAATATCAATAT+TGG 0.348361 7_1:-56006626 None:intergenic
GAAGACGCCATTCTCAATTT+CGG 0.359654 7_1:-56003668 None:intergenic
CGGTTGAATTAGCTGCAGTT+GGG 0.365347 7_1:+56004731 Msa1025440:CDS
CTTTGTGGTCTTGGCATTAG+TGG 0.366173 7_1:+56006641 Msa1025440:CDS
TTATAGTCCTGTATTGCTAC+TGG 0.374562 7_1:-56010277 None:intergenic
AACTAAGGCCTTTAACCAAT+TGG 0.377033 7_1:-56010616 None:intergenic
TGTTGCTCAGTCAGGTATAT+TGG 0.379621 7_1:+56009153 Msa1025440:CDS
TGCGTGTTCTAGCTGGAGTT+TGG 0.381264 7_1:+56009899 Msa1025440:CDS
TGCTCTAGCACTGGCTGGTC+AGG 0.390707 7_1:+56007954 Msa1025440:CDS
CAAGGCAACAGCAGCAGGCA+AGG 0.394134 7_1:-56003972 None:intergenic
TATGACACTGACAACATCTT+TGG 0.395916 7_1:+56007852 Msa1025440:CDS
TGGACCTCTTATGACTATCC+TGG 0.400420 7_1:+56005118 Msa1025440:CDS
TGTTCAGCAGGTTCACGTAT+TGG 0.404562 7_1:-56005880 None:intergenic
GTGCTAAATAAACTAGAAAA+TGG 0.406300 7_1:-56009112 None:intergenic
ATTGGAAAGGAGGAAGATTC+CGG 0.412232 7_1:+56004847 Msa1025440:CDS
GGAAAGGAGCTTCTTGCGTT+GGG 0.415093 7_1:-56005024 None:intergenic
GCTGCCAAGGCAACAGCAGC+AGG 0.415560 7_1:-56003977 None:intergenic
AACATCTTTGGCAGCTAACC+AGG 0.416750 7_1:+56007864 Msa1025440:CDS
GATGGCCTGCCATAGGTATA+GGG 0.424451 7_1:-56007888 None:intergenic
CTGGTGGCTGCTCCAGTAGT+TGG 0.427710 7_1:+56009835 Msa1025440:CDS
TGTTAACTTTCTGCCATTGT+TGG 0.427962 7_1:+56010439 Msa1025440:three_prime_UTR
ATGGCATTGCGTGTTCTAGC+TGG 0.432813 7_1:+56009892 Msa1025440:CDS
AGTCTGATACCCCATAATAA+AGG 0.434049 7_1:-56009618 None:intergenic
TAACAGATTGGTTTAGGAGC+TGG 0.435127 7_1:+56009052 Msa1025440:intron
TGTAATCTTCACTAACCAAT+TGG 0.439155 7_1:+56010601 Msa1025440:three_prime_UTR
GTCGCACTTTCACTTGGCTC+TGG 0.441015 7_1:+56005098 Msa1025440:CDS
GTTAACTTTCTGCCATTGTT+GGG 0.442451 7_1:+56010440 Msa1025440:three_prime_UTR
TGGTTTAAATTTGATGAACT+TGG 0.447695 7_1:+56003929 Msa1025440:CDS
AAGAAGAGAAGAGGGTTTAG+GGG 0.454158 7_1:-56003888 None:intergenic
ATCTCAACCAGTGAATGCTT+TGG 0.455246 7_1:+56009579 Msa1025440:CDS
CCAATATTGATATTTCTTTG+TGG 0.456093 7_1:+56006626 Msa1025440:CDS
TGTCAAGGATAGGTGCTAGT+TGG 0.458646 7_1:+56009790 Msa1025440:intron
CATTATATATAGAGTGATAC+AGG 0.459875 7_1:+56008930 Msa1025440:CDS
TAAATTTGATGAACTTGGAA+TGG 0.461840 7_1:+56003934 Msa1025440:CDS
AGAGAATCCAGTAGCAATAC+AGG 0.464750 7_1:+56010270 Msa1025440:three_prime_UTR
AACAATCCTGCCCAGACTCC+AGG 0.466374 7_1:-56009862 None:intergenic
AAATTTGGAAGAAGAGAAGA+GGG 0.470448 7_1:-56003896 None:intergenic
CTGCCATAGGTATAGGGCCC+TGG 0.473413 7_1:-56007882 None:intergenic
TTTGCCCCATCAAAGTCAAA+AGG 0.475629 7_1:-56006852 None:intergenic
GTGTCGATCAATGAGGCAAT+TGG 0.476709 7_1:-56004004 None:intergenic
GCCGAGGAACAAGCGCTGAT+TGG 0.476810 7_1:+56004829 Msa1025440:CDS
TTAGAGTTGCTATCTTGTAC+TGG 0.478264 7_1:+56010527 Msa1025440:three_prime_UTR
TCTGCTAATTGCCAGGACTT+TGG 0.478272 7_1:+56007816 Msa1025440:CDS
GCGGTTGAATTAGCTGCAGT+TGG 0.478624 7_1:+56004730 Msa1025440:CDS
AGGAAAGGAGCTTCTTGCGT+TGG 0.479088 7_1:-56005025 None:intergenic
TCTTGCCAGTAGTTACTCAC+TGG 0.485280 7_1:+56008885 Msa1025440:CDS
CGCTTGTTCCTCGGCAACAA+AGG 0.486529 7_1:-56004821 None:intergenic
GAAACTGTCGCACTTTCACT+TGG 0.488894 7_1:+56005092 Msa1025440:CDS
TCCAATCAGCGCTTGTTCCT+CGG 0.491174 7_1:-56004830 None:intergenic
GCAGCTAATGCAATCACAAT+TGG 0.492797 7_1:-56005934 None:intergenic
TTGCCCCATCAAAGTCAAAA+GGG 0.493120 7_1:-56006851 None:intergenic
TTCCAAATTTCAGAAATGGT+TGG 0.495235 7_1:+56003909 Msa1025440:CDS
AATGTAAGAAAATGTTCAGC+AGG 0.501974 7_1:-56005892 None:intergenic
CTCATTAAATGGCAGGTGCT+GGG 0.505763 7_1:+56006579 Msa1025440:intron
GTAAGTAAATGGAGAGAGAG+AGG 0.506628 7_1:-56006033 None:intergenic
ACTTCTTTAGCACTTGCTGC+AGG 0.506871 7_1:+56005056 Msa1025440:CDS
GTGTTCTAGCTGGAGTTTGG+AGG 0.507849 7_1:+56009902 Msa1025440:CDS
AGTTGGACTTCCTGGAGTCT+GGG 0.511278 7_1:+56009852 Msa1025440:CDS
GTGGTCCGTGGGATATGATC+TGG 0.518408 7_1:+56010145 Msa1025440:CDS
TAGGTGGTCTGCTAATTGCC+AGG 0.518537 7_1:+56007809 Msa1025440:intron
GCTTACCGATGCTCTAGCAC+TGG 0.519319 7_1:+56007945 Msa1025440:CDS
TTGAGAGGCTAAATGAGCAC+AGG 0.519327 7_1:+56010368 Msa1025440:three_prime_UTR
AGACTTGACTTCCATGCTAC+AGG 0.521025 7_1:-56010417 None:intergenic
GAAATTTGGAAGAAGAGAAG+AGG 0.521787 7_1:-56003897 None:intergenic
TTCAGGTTAAGCAGCAAAAG+TGG 0.522457 7_1:+56010126 Msa1025440:intron
TAACCAGGGCCCTATACCTA+TGG 0.524211 7_1:+56007879 Msa1025440:CDS
GCTTTGGCATTTGTTATCGA+TGG 0.528843 7_1:+56009595 Msa1025440:CDS
CTCTAAGTAGAGAGTTTGAG+AGG 0.528977 7_1:+56010353 Msa1025440:three_prime_UTR
TACTTGCCAACTGCATATAG+AGG 0.532228 7_1:-56005994 None:intergenic
ATACCCAGGATAGTCATAAG+AGG 0.532598 7_1:-56005122 None:intergenic
TATCGATGGCCTTTATTATG+GGG 0.532658 7_1:+56009609 Msa1025440:CDS
GGAAGATTCCGGTCAAATTG+AGG 0.533617 7_1:+56004858 Msa1025440:CDS
GTCATCATCAGTGGTGGTGG+TGG 0.533655 7_1:-56003843 None:intergenic
ACCGATGCTCTAGCACTGGC+TGG 0.534118 7_1:+56007949 Msa1025440:CDS
ACAGCCTTCGTCGGCCACAT+AGG 0.536847 7_1:+56004025 Msa1025440:CDS
GCAATGAGGAAGAAAGTTTG+TGG 0.538851 7_1:-56003777 None:intergenic
GATGTAGTAATATTAAGTAA+AGG 0.539185 7_1:-56004799 None:intergenic
ATTTCCCAGTGAGTAACTAC+TGG 0.540698 7_1:-56008890 None:intergenic
GGACCTCTTATGACTATCCT+GGG 0.544055 7_1:+56005119 Msa1025440:CDS
TGGATTCTCTGTAAGAGCAT+GGG 0.544219 7_1:-56010257 None:intergenic
CTGGATTCTCTGTAAGAGCA+TGG 0.544924 7_1:-56010258 None:intergenic
CAAATTTGATGGCCTGCCAT+AGG 0.547067 7_1:-56007895 None:intergenic
TATAAACACAGCCAAAGTCC+TGG 0.547856 7_1:-56007827 None:intergenic
GGCAATTGGATCAGCTGCCA+AGG 0.547954 7_1:-56003990 None:intergenic
ACAAATGCCAAAGCATTCAC+TGG 0.548860 7_1:-56009586 None:intergenic
CACAATTGGTAGAGCACCAA+AGG 0.559227 7_1:-56005920 None:intergenic
ACTCCAGGAAGTCCAACTAC+TGG 0.562932 7_1:-56009847 None:intergenic
TACTACATCCTTTGTTGCCG+AGG 0.564510 7_1:+56004813 Msa1025440:CDS
CTTGCCAGTAGTTACTCACT+GGG 0.569143 7_1:+56008886 Msa1025440:CDS
GGTTGAATTAGCTGCAGTTG+GGG 0.572124 7_1:+56004732 Msa1025440:CDS
GCTCCCTCCGAAATTGAGAA+TGG 0.572377 7_1:+56003661 Msa1025440:CDS
AGGCTAAATGAGCACAGGGA+TGG 0.573497 7_1:+56010373 Msa1025440:three_prime_UTR
GTATCACTCTATATATAATG+AGG 0.574171 7_1:-56008927 None:intergenic
GGAACAAGCGCTGATTGGAA+AGG 0.578190 7_1:+56004834 Msa1025440:CDS
GGCAGGCCATCAAATTTGCA+TGG 0.582015 7_1:+56007900 Msa1025440:CDS
ACCAGCCAGTGCTAGAGCAT+CGG 0.583214 7_1:-56007950 None:intergenic
ATTCTTCTATGGAATTTGAG+TGG 0.585003 7_1:+56006813 Msa1025440:CDS
CATTGAATACTTTCGACACG+AGG 0.586126 7_1:-56004774 None:intergenic
ATTGTCATCATCAGTGGTGG+TGG 0.589887 7_1:-56003846 None:intergenic
GACGCCATTCTCAATTTCGG+AGG 0.591904 7_1:-56003665 None:intergenic
ATAAACAAATTTCCCAACAA+TGG 0.591994 7_1:-56010452 None:intergenic
AGAAGAGAAGAGGGTTTAGG+GGG 0.592528 7_1:-56003887 None:intergenic
AGCATGGGGATTTGGTATGT+AGG 0.595607 7_1:-56010242 None:intergenic
GCTTATCAGTATCCTCACAT+TGG 0.596977 7_1:-56010207 None:intergenic
GGATTCTCTGTAAGAGCATG+GGG 0.603234 7_1:-56010256 None:intergenic
TTTGTGGTTAGTGTAGATGG+AGG 0.605477 7_1:-56003761 None:intergenic
CAGGGCCCTATACCTATGGC+AGG 0.606129 7_1:+56007883 Msa1025440:CDS
AAGACACCTCTATATGCAGT+TGG 0.615015 7_1:+56005988 Msa1025440:CDS
GGAGAAGCTCGAAGTCGAAG+AGG 0.615838 7_1:-56003806 None:intergenic
ACGCCATTCTCAATTTCGGA+GGG 0.618935 7_1:-56003664 None:intergenic
TGAGTATGCTGCTTACTCGA+TGG 0.619862 7_1:+56009642 Msa1025440:CDS
AAGAGAATTGTCATCATCAG+TGG 0.620059 7_1:-56003852 None:intergenic
GACATACAGCAGCTATACCC+AGG 0.620491 7_1:-56005136 None:intergenic
TGTACCTATGTGGCCGACGA+AGG 0.621492 7_1:-56004029 None:intergenic
TAAGCAGCAAAAGTGGTCCG+TGG 0.621617 7_1:+56010133 Msa1025440:CDS
TGCTAAAGAAGTTGATACTG+AGG 0.621924 7_1:-56005045 None:intergenic
ACAAGCGCTGATTGGAAAGG+AGG 0.623990 7_1:+56004837 Msa1025440:CDS
AAGCAGCAAAAGTGGTCCGT+GGG 0.624052 7_1:+56010134 Msa1025440:CDS
AAGAAGTTGATACTGAGGAA+AGG 0.624960 7_1:-56005040 None:intergenic
GTGATTGCATTAGCTGCACA+AGG 0.626790 7_1:+56005940 Msa1025440:CDS
TCATCATCAGTGGTGGTGGT+GGG 0.629936 7_1:-56003842 None:intergenic
TGCCCCATCAAAGTCAAAAG+GGG 0.630027 7_1:-56006850 None:intergenic
CGAAGAGGAGCAGAGCAATG+AGG 0.633874 7_1:-56003791 None:intergenic
TCAAGAGCTTCTCCAATGTG+AGG 0.648471 7_1:+56010195 Msa1025440:three_prime_UTR
TTTCGGCAAATGTACCTATG+TGG 0.653234 7_1:-56004039 None:intergenic
AGAATTGTCATCATCAGTGG+TGG 0.654150 7_1:-56003849 None:intergenic
TGAGAGGCTAAATGAGCACA+GGG 0.660822 7_1:+56010369 Msa1025440:three_prime_UTR
TGAATGTCAGACCTGTAGCA+TGG 0.664909 7_1:+56010406 Msa1025440:three_prime_UTR
TCATACCAGATCATATCCCA+CGG 0.666343 7_1:-56010150 None:intergenic
TTGATCGACACAGCCTTCGT+CGG 0.670006 7_1:+56004016 Msa1025440:CDS
ACATCTTTGGCAGCTAACCA+GGG 0.692665 7_1:+56007865 Msa1025440:CDS
GAAGGCTGTGTCGATCAATG+AGG 0.708053 7_1:-56004011 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAACAAAATAAAAATAAT+AGG - chr7_1:56005187-56005206 None:intergenic 10.0%
!!! TTTATATTTTCTATTTTTTC+AGG + chr7_1:56010109-56010128 Msa1025440:intron 10.0%
!! TCAAATCATAAAATGAATTT+CGG - chr7_1:56004059-56004078 None:intergenic 15.0%
!!! TAACTAACAAACTTTTTTTT+AGG - chr7_1:56004139-56004158 None:intergenic 15.0%
!!! TTTATGTTTTGTAACAATTT+TGG + chr7_1:56005638-56005657 Msa1025440:intron 15.0%
!! GAAAATATAAACAGATATTA+TGG - chr7_1:56006279-56006298 None:intergenic 15.0%
!!! TAACAAAATATGATTTTCAT+TGG + chr7_1:56007684-56007703 Msa1025440:intron 15.0%
!!! TCTGAAATGAATTAATTAAA+TGG - chr7_1:56008013-56008032 None:intergenic 15.0%
!! AATTACATATAACAAACATT+AGG - chr7_1:56009439-56009458 None:intergenic 15.0%
!!! AGTAATGTTTTTTGAAATAT+CGG + chr7_1:56009525-56009544 Msa1025440:intron 15.0%
!!! AGTGTATATAATTTTTTTGA+TGG + chr7_1:56009928-56009947 Msa1025440:intron 15.0%
!!! AAAAAAGTTTGTTAGTTAGT+TGG + chr7_1:56004141-56004160 Msa1025440:intron 20.0%
!! TACAAAACGTCATATAATTT+GGG - chr7_1:56004186-56004205 None:intergenic 20.0%
!! GTTGAAAACTAATTATTCTA+AGG + chr7_1:56004316-56004335 Msa1025440:intron 20.0%
!! ATCTAAACAAAAAAACTTAC+AGG + chr7_1:56004486-56004505 Msa1025440:intron 20.0%
!!! TTAATTAGTTTTCTCTAAAC+AGG + chr7_1:56004706-56004725 Msa1025440:intron 20.0%
!!! TAATTAGTTTTCTCTAAACA+GGG + chr7_1:56004707-56004726 Msa1025440:intron 20.0%
!! GATGTAGTAATATTAAGTAA+AGG - chr7_1:56004802-56004821 None:intergenic 20.0%
!! ATAAAAATAATAGGCGATAT+TGG - chr7_1:56005178-56005197 None:intergenic 20.0%
!! AACATTACTTTCAATTAAGA+TGG - chr7_1:56005358-56005377 None:intergenic 20.0%
!! TTGTTACAAAACATAAAGTT+AGG - chr7_1:56005635-56005654 None:intergenic 20.0%
!!! TTGAATTATAAAAGTATCCT+TGG + chr7_1:56006194-56006213 Msa1025440:intron 20.0%
!! ATTTAAACAATCTCAATTCA+TGG + chr7_1:56006337-56006356 Msa1025440:intron 20.0%
!! TTTAACATAGTAGACTAAAA+GGG - chr7_1:56006369-56006388 None:intergenic 20.0%
!! ATTTAACATAGTAGACTAAA+AGG - chr7_1:56006370-56006389 None:intergenic 20.0%
!! AATGAAAGCTATTAAATATC+TGG - chr7_1:56006796-56006815 None:intergenic 20.0%
!! GTTTAGTTGAATTGTTTATT+TGG + chr7_1:56006912-56006931 Msa1025440:intron 20.0%
!! TGGTTTATAATAGAACATTA+TGG + chr7_1:56006974-56006993 Msa1025440:intron 20.0%
!!! TTTTTGATTATATGCTTAAG+TGG + chr7_1:56007287-56007306 Msa1025440:intron 20.0%
!!! TTTTTATTATTGCATTGTGT+AGG + chr7_1:56007790-56007809 Msa1025440:intron 20.0%
!! ATTATCGAAACATATATCAT+AGG + chr7_1:56008059-56008078 Msa1025440:intron 20.0%
!! AAAATCCAAATTTCTTAACA+TGG + chr7_1:56008235-56008254 Msa1025440:intron 20.0%
!!! GATTATTTTTAGATTCAGAT+TGG + chr7_1:56009299-56009318 Msa1025440:intron 20.0%
!! AAAAATATATAAGTGCTTGA+AGG + chr7_1:56009379-56009398 Msa1025440:intron 20.0%
!! TATCTATTAATCATTGAAGT+GGG - chr7_1:56009674-56009693 None:intergenic 20.0%
!!! ATTTTAAAGATGGAATGTGA+TGG - chr7_1:56003727-56003746 None:intergenic 25.0%
! TGGTTTAAATTTGATGAACT+TGG + chr7_1:56003929-56003948 Msa1025440:CDS 25.0%
! TAAATTTGATGAACTTGGAA+TGG + chr7_1:56003934-56003953 Msa1025440:CDS 25.0%
! ACAAAACGTCATATAATTTG+GGG - chr7_1:56004185-56004204 None:intergenic 25.0%
! GTACAAAACGTCATATAATT+TGG - chr7_1:56004187-56004206 None:intergenic 25.0%
! ACGAGAAAGAGATAATAAAA+AGG + chr7_1:56004221-56004240 Msa1025440:intron 25.0%
! AAGTTAGTTAGTTAGTTAGT+TGG + chr7_1:56004269-56004288 Msa1025440:intron 25.0%
! AGTTAGTTAGTTAGTTAGTT+GGG + chr7_1:56004270-56004289 Msa1025440:intron 25.0%
!! AGTTTTCAACTAGATTAAGA+AGG - chr7_1:56004306-56004325 None:intergenic 25.0%
! AAAGCAACAATTGTTTAACA+TGG + chr7_1:56004454-56004473 Msa1025440:intron 25.0%
! AAAACCAAAAATTCCCATTA+TGG + chr7_1:56004513-56004532 Msa1025440:intron 25.0%
!!! AATTAGTTTTCTCTAAACAG+GGG + chr7_1:56004708-56004727 Msa1025440:intron 25.0%
!!! ATGGTATGATTTTTCAAGAA+CGG + chr7_1:56004884-56004903 Msa1025440:intron 25.0%
!! GTAGTTATCGTAAATTTTTC+AGG + chr7_1:56004996-56005015 Msa1025440:intron 25.0%
!!! TATCGTAAATTTTTCAGGAA+AGG + chr7_1:56005001-56005020 Msa1025440:intron 25.0%
!! TGAACATTTTCTTACATTGA+GGG + chr7_1:56005897-56005916 Msa1025440:CDS 25.0%
! GTAAGTTATGAGTAAGTAAA+TGG - chr7_1:56006047-56006066 None:intergenic 25.0%
!!! AATTATAAAAGTATCCTTGG+CGG + chr7_1:56006197-56006216 Msa1025440:intron 25.0%
! TATTCATGACATATTTACCA+TGG - chr7_1:56006230-56006249 None:intergenic 25.0%
! ATTCTAACTTTGTCGATATT+AGG + chr7_1:56006311-56006330 Msa1025440:intron 25.0%
! GAATTTATAGAAAACCATCA+GGG - chr7_1:56006443-56006462 None:intergenic 25.0%
! AGAATTTATAGAAAACCATC+AGG - chr7_1:56006444-56006463 None:intergenic 25.0%
!!! GTCAATTTCTTGTTTTTACA+TGG + chr7_1:56006488-56006507 Msa1025440:intron 25.0%
! TGTGGATGTATAAATAACAA+AGG + chr7_1:56006553-56006572 Msa1025440:intron 25.0%
! GAACTTTCTTATTGTGATAT+TGG + chr7_1:56006601-56006620 Msa1025440:CDS 25.0%
! CCACAAAGAAATATCAATAT+TGG - chr7_1:56006629-56006648 None:intergenic 25.0%
! CCAATATTGATATTTCTTTG+TGG + chr7_1:56006626-56006645 Msa1025440:CDS 25.0%
! TAATAGCTTTCATTCTTCTA+TGG + chr7_1:56006802-56006821 Msa1025440:CDS 25.0%
! CTTAATTTCATTGAAGTACA+AGG - chr7_1:56007079-56007098 None:intergenic 25.0%
!!! CTTTTGTTGTTGATTTATAG+TGG + chr7_1:56007391-56007410 Msa1025440:intron 25.0%
! AATTCAATCATGTGTAACAT+TGG - chr7_1:56008042-56008061 None:intergenic 25.0%
!! ATTATGAACTTTTATTCGTC+TGG - chr7_1:56008117-56008136 None:intergenic 25.0%
! TGCAGTATGTTGAATATTAA+AGG + chr7_1:56008144-56008163 Msa1025440:intron 25.0%
! GCAGTATGTTGAATATTAAA+GGG + chr7_1:56008145-56008164 Msa1025440:intron 25.0%
! TATTGGAATTGTTTACTGAT+GGG - chr7_1:56008274-56008293 None:intergenic 25.0%
! ATATTGGAATTGTTTACTGA+TGG - chr7_1:56008275-56008294 None:intergenic 25.0%
!!! ATGGCAAATTTTGAAACAAT+TGG + chr7_1:56008342-56008361 Msa1025440:intron 25.0%
!!! AATTTTGAAACAATTGGTTG+TGG + chr7_1:56008348-56008367 Msa1025440:intron 25.0%
! GTGTTAGATTTCCAAATAAT+AGG - chr7_1:56008637-56008656 None:intergenic 25.0%
! GTGTTAGATTTCCAAATAAT+AGG - chr7_1:56008637-56008656 None:intergenic 25.0%
! GTATCACTCTATATATAATG+AGG - chr7_1:56008930-56008949 None:intergenic 25.0%
! CATTATATATAGAGTGATAC+AGG + chr7_1:56008930-56008949 Msa1025440:CDS 25.0%
! TGTCCTAATCTGATAAAAAA+GGG - chr7_1:56008985-56009004 None:intergenic 25.0%
! ATGTCCTAATCTGATAAAAA+AGG - chr7_1:56008986-56009005 None:intergenic 25.0%
!!! TTGTCGATGATCTTATTTTT+TGG + chr7_1:56009082-56009101 Msa1025440:CDS 25.0%
!!! TGTCGATGATCTTATTTTTT+GGG + chr7_1:56009083-56009102 Msa1025440:CDS 25.0%
!!! ATGATCTTATTTTTTGGGTT+TGG + chr7_1:56009088-56009107 Msa1025440:CDS 25.0%
! GTGCTAAATAAACTAGAAAA+TGG - chr7_1:56009115-56009134 None:intergenic 25.0%
! TATGTCTACATAGAAATGTT+TGG + chr7_1:56009488-56009507 Msa1025440:intron 25.0%
! GTATCTATTAATCATTGAAG+TGG - chr7_1:56009675-56009694 None:intergenic 25.0%
! TGCATTGTACTATTCATATT+TGG + chr7_1:56009955-56009974 Msa1025440:intron 25.0%
! TTAAATGGAATTTGACATGA+TGG + chr7_1:56010024-56010043 Msa1025440:intron 25.0%
!!! TAGAGAAAGATTTTAGCATT+TGG - chr7_1:56010338-56010357 None:intergenic 25.0%
! ATAAACAAATTTCCCAACAA+TGG - chr7_1:56010455-56010474 None:intergenic 25.0%
!! TGTTGGGAAATTTGTTTATT+AGG + chr7_1:56010456-56010475 Msa1025440:three_prime_UTR 25.0%
!! TTGCATATTTTCATTGCTAA+AGG + chr7_1:56010494-56010513 Msa1025440:three_prime_UTR 25.0%
! ATACATAAAAGTCTCTTTCT+AGG + chr7_1:56010558-56010577 Msa1025440:three_prime_UTR 25.0%
! AGGAAAAAAGTCATTATTGT+TGG + chr7_1:56010578-56010597 Msa1025440:three_prime_UTR 25.0%
! TACCAAAAAAGAAGAAACTA+AGG - chr7_1:56010634-56010653 None:intergenic 25.0%
!! AATGTTGGGGATTTTAAAGA+TGG - chr7_1:56003737-56003756 None:intergenic 30.0%
!! TAGATGGAGGTTTTAATGTT+GGG - chr7_1:56003751-56003770 None:intergenic 30.0%
AAATTTGGAAGAAGAGAAGA+GGG - chr7_1:56003899-56003918 None:intergenic 30.0%
CTTCTTCCAAATTTCAGAAA+TGG + chr7_1:56003905-56003924 Msa1025440:CDS 30.0%
TTCCAAATTTCAGAAATGGT+TGG + chr7_1:56003909-56003928 Msa1025440:CDS 30.0%
!! AACCAACCATTTCTGAAATT+TGG - chr7_1:56003914-56003933 None:intergenic 30.0%
CAAAACGTCATATAATTTGG+GGG - chr7_1:56004184-56004203 None:intergenic 30.0%
CAACAATTGTTTAACATGGA+GGG + chr7_1:56004458-56004477 Msa1025440:intron 30.0%
ACAACTAATTGCTAAGAAAC+TGG + chr7_1:56005426-56005445 Msa1025440:intron 30.0%
CATACATCAATTAAAAGCTC+TGG - chr7_1:56005587-56005606 None:intergenic 30.0%
AATGTAAGAAAATGTTCAGC+AGG - chr7_1:56005895-56005914 None:intergenic 30.0%
! CTGAACATTTTCTTACATTG+AGG + chr7_1:56005896-56005915 Msa1025440:CDS 30.0%
AATTGCTTATGACCTTTAAC+TGG + chr7_1:56006087-56006106 Msa1025440:intron 30.0%
GGATAAATAGAACCAGTTAA+AGG - chr7_1:56006102-56006121 None:intergenic 30.0%
CAAGAATGAACACTTAAACA+CGG + chr7_1:56006121-56006140 Msa1025440:intron 30.0%
TAGTCTACTATGTTAAATGC+AGG + chr7_1:56006372-56006391 Msa1025440:intron 30.0%
AACAAAGGCTTCTCATTAAA+TGG + chr7_1:56006568-56006587 Msa1025440:intron 30.0%
TTGATATTTCTTTGTGGTCT+TGG + chr7_1:56006632-56006651 Msa1025440:CDS 30.0%
CAGAAGATCACATGAATTAA+AGG - chr7_1:56006745-56006764 None:intergenic 30.0%
ATTCTTCTATGGAATTTGAG+TGG + chr7_1:56006813-56006832 Msa1025440:CDS 30.0%
!! TTTTTCAGCTATCTGAAATC+TGG + chr7_1:56006876-56006895 Msa1025440:CDS 30.0%
ATTCAACTAAACTGAAAAGC+AGG - chr7_1:56006904-56006923 None:intergenic 30.0%
ATAAACCATATTACACTAGC+TGG - chr7_1:56006962-56006981 None:intergenic 30.0%
!! TGTTGTTGATGTTGTTTCTT+TGG + chr7_1:56007049-56007068 Msa1025440:intron 30.0%
! TATTTGTTGGACATGTTACT+AGG + chr7_1:56007554-56007573 Msa1025440:intron 30.0%
ATTCGTAATGCAAAAAAGAC+AGG + chr7_1:56007582-56007601 Msa1025440:intron 30.0%
!! TGGCTTGAAAATGTTTTGTT+TGG + chr7_1:56007704-56007723 Msa1025440:intron 30.0%
CGTGTGATTAAAGAGTAATA+CGG + chr7_1:56007755-56007774 Msa1025440:intron 30.0%
TTATTATTGCATTGTGTAGG+TGG + chr7_1:56007793-56007812 Msa1025440:intron 30.0%
AAACTTCCATGCAAATTTGA+TGG - chr7_1:56007909-56007928 None:intergenic 30.0%
ATCAAATTTGCATGGAAGTT+TGG + chr7_1:56007908-56007927 Msa1025440:CDS 30.0%
ATATATCATAGGCAGTTTAG+CGG + chr7_1:56008070-56008089 Msa1025440:intron 30.0%
ACCTTGAAATCAAGCAAATT+GGG + chr7_1:56008177-56008196 Msa1025440:intron 30.0%
! TTGAAATGTTTGCTGATAAG+AGG + chr7_1:56008211-56008230 Msa1025440:intron 30.0%
TTCAGCCATGTTAAGAAATT+TGG - chr7_1:56008243-56008262 None:intergenic 30.0%
! TTTTTCGTTCATAGTCATGT+TGG - chr7_1:56008311-56008330 None:intergenic 30.0%
TACATAGTCTTTCATCAAGA+GGG + chr7_1:56008399-56008418 Msa1025440:intron 30.0%
AACCTCTTGTGTAAAAAACA+GGG + chr7_1:56008491-56008510 Msa1025440:intron 30.0%
CTATGTAGCATCACTAAAAA+GGG - chr7_1:56008596-56008615 None:intergenic 30.0%
ACTATGTAGCATCACTAAAA+AGG - chr7_1:56008597-56008616 None:intergenic 30.0%
AATAATAGGAATTCCACTAC+TGG - chr7_1:56008623-56008642 None:intergenic 30.0%
! GTAGTGGAATTCCTATTATT+TGG + chr7_1:56008623-56008642 Msa1025440:intron 30.0%
TTGGAAATCTAACACAAACA+AGG + chr7_1:56008642-56008661 Msa1025440:intron 30.0%
TGGAAATCTAACACAAACAA+GGG + chr7_1:56008643-56008662 Msa1025440:intron 30.0%
AGGGGTTTGAAAATTATTAG+TGG + chr7_1:56008662-56008681 Msa1025440:intron 30.0%
GGGGTTTGAAAATTATTAGT+GGG + chr7_1:56008663-56008682 Msa1025440:intron 30.0%
CTATGTAGCATCACTAAAAA+GGG - chr7_1:56008596-56008615 None:intergenic 30.0%
ACTATGTAGCATCACTAAAA+AGG - chr7_1:56008597-56008616 None:intergenic 30.0%
AATAATAGGAATTCCACTAC+TGG - chr7_1:56008623-56008642 None:intergenic 30.0%
! GTAGTGGAATTCCTATTATT+TGG + chr7_1:56008623-56008642 Msa1025440:intron 30.0%
TTGGAAATCTAACACAAACA+AGG + chr7_1:56008642-56008661 Msa1025440:intron 30.0%
TGGAAATCTAACACAAACAA+GGG + chr7_1:56008643-56008662 Msa1025440:intron 30.0%
AAAAAAGGGAAGCAGATTAT+GGG - chr7_1:56008971-56008990 None:intergenic 30.0%
TAAAAAAGGGAAGCAGATTA+TGG - chr7_1:56008972-56008991 None:intergenic 30.0%
!!! CTTCCCTTTTTTATCAGATT+AGG + chr7_1:56008979-56008998 Msa1025440:intron 30.0%
!! CATTTCTAACAGATTGGTTT+AGG + chr7_1:56009046-56009065 Msa1025440:intron 30.0%
! TACAATTACTTGATTCGTGT+AGG + chr7_1:56009210-56009229 Msa1025440:intron 30.0%
GAGTTCAAGTGAACTTAATT+TGG + chr7_1:56009237-56009256 Msa1025440:intron 30.0%
! AGATTGGTATTCCTTTTATC+TGG + chr7_1:56009315-56009334 Msa1025440:intron 30.0%
! TTTGGTCATGCCAAATTTTT+AGG + chr7_1:56009406-56009425 Msa1025440:intron 30.0%
! TTGGTCATGCCAAATTTTTA+GGG + chr7_1:56009407-56009426 Msa1025440:intron 30.0%
TTATCGATGGCCTTTATTAT+GGG + chr7_1:56009608-56009627 Msa1025440:CDS 30.0%
AAAGATGAGCCAAATAAAGA+GGG - chr7_1:56009747-56009766 None:intergenic 30.0%
! AATTTCTTCAGTTTTCATGC+TGG + chr7_1:56009816-56009835 Msa1025440:CDS 30.0%
!! ACTGGAAACATTGGTTTAAA+TGG + chr7_1:56010009-56010028 Msa1025440:intron 30.0%
TGTAATCTTCACTAACCAAT+TGG + chr7_1:56010601-56010620 Msa1025440:three_prime_UTR 30.0%
TTCACTAACCAATTGGTTAA+AGG + chr7_1:56010608-56010627 Msa1025440:three_prime_UTR 30.0%
!! AGATGGAGGTTTTAATGTTG+GGG - chr7_1:56003750-56003769 None:intergenic 35.0%
!! GTAGATGGAGGTTTTAATGT+TGG - chr7_1:56003752-56003771 None:intergenic 35.0%
AAGTTTGTGGTTAGTGTAGA+TGG - chr7_1:56003767-56003786 None:intergenic 35.0%
AAGAGAATTGTCATCATCAG+TGG - chr7_1:56003855-56003874 None:intergenic 35.0%
GAAATTTGGAAGAAGAGAAG+AGG - chr7_1:56003900-56003919 None:intergenic 35.0%
GTCTTTGATGTCAACTTAAC+AGG + chr7_1:56004386-56004405 Msa1025440:intron 35.0%
GCAACAATTGTTTAACATGG+AGG + chr7_1:56004457-56004476 Msa1025440:intron 35.0%
!! GATTTTAGTCCTGCCATAAT+GGG - chr7_1:56004529-56004548 None:intergenic 35.0%
!! TGATTTTAGTCCTGCCATAA+TGG - chr7_1:56004530-56004549 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG + chr7_1:56004594-56004613 Msa1025440:intron 35.0%
! ACCATTTTCCTCAATTTGAC+CGG - chr7_1:56004869-56004888 None:intergenic 35.0%
AAATTCTACGACCAATTCCA+GGG - chr7_1:56004939-56004958 None:intergenic 35.0%
!! AAGAAGTTGATACTGAGGAA+AGG - chr7_1:56005043-56005062 None:intergenic 35.0%
!! TGCTAAAGAAGTTGATACTG+AGG - chr7_1:56005048-56005067 None:intergenic 35.0%
TGAGTGGTAAATTGAAGACT+TGG - chr7_1:56005227-56005246 None:intergenic 35.0%
CAATTTACCACTCAAAACAC+TGG + chr7_1:56005233-56005252 Msa1025440:intron 35.0%
AAAACAGTTATGCACGACTA+TGG - chr7_1:56005501-56005520 None:intergenic 35.0%
TGGAGCATGAAAATATTGAG+AGG + chr7_1:56005523-56005542 Msa1025440:intron 35.0%
CATAGCGTCAACTATATGAT+TGG + chr7_1:56005801-56005820 Msa1025440:intron 35.0%
ATAGATCTTGTATGCTGTAC+AGG + chr7_1:56005852-56005871 Msa1025440:intron 35.0%
AGGTCATAAGCAATTGTAAC+TGG - chr7_1:56006082-56006101 None:intergenic 35.0%
CGTGTTTAAGTGTTCATTCT+TGG - chr7_1:56006123-56006142 None:intergenic 35.0%
TATATCTGTGATTTCCCTGA+TGG + chr7_1:56006426-56006445 Msa1025440:intron 35.0%
!!! TAACCCCTTTTGACTTTGAT+GGG + chr7_1:56006847-56006866 Msa1025440:CDS 35.0%
! TTTTCCCCATTAGATGAGTT+CGG - chr7_1:56007371-56007390 None:intergenic 35.0%
CATTACGTGCTAATTCAAGT+TGG + chr7_1:56007458-56007477 Msa1025440:intron 35.0%
TGTCCAGCAACAATATTTGT+TGG + chr7_1:56007541-56007560 Msa1025440:intron 35.0%
TGTCCAACAAATATTGTTGC+TGG - chr7_1:56007547-56007566 None:intergenic 35.0%
TATGACACTGACAACATCTT+TGG + chr7_1:56007852-56007871 Msa1025440:CDS 35.0%
TTTGCTTGATTTCAAGGTCA+GGG - chr7_1:56008175-56008194 None:intergenic 35.0%
ATTTGCTTGATTTCAAGGTC+AGG - chr7_1:56008176-56008195 None:intergenic 35.0%
GACCTTGAAATCAAGCAAAT+TGG + chr7_1:56008176-56008195 Msa1025440:intron 35.0%
! ACCCAATTTGCTTGATTTCA+AGG - chr7_1:56008181-56008200 None:intergenic 35.0%
ACGAAAAAACTGTTCGCAAA+TGG + chr7_1:56008323-56008342 Msa1025440:intron 35.0%
CTACATAGTCTTTCATCAAG+AGG + chr7_1:56008398-56008417 Msa1025440:intron 35.0%
ACATAGTCTTTCATCAAGAG+GGG + chr7_1:56008400-56008419 Msa1025440:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG + chr7_1:56008441-56008460 Msa1025440:intron 35.0%
!!! CTGTTTTTTACACAAGAGGT+TGG - chr7_1:56008492-56008511 None:intergenic 35.0%
CAACCTCTTGTGTAAAAAAC+AGG + chr7_1:56008490-56008509 Msa1025440:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr7_1:56008496-56008515 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr7_1:56008496-56008515 Msa1025440:intron 35.0%
CATACAATACACCAAATGGT+GGG + chr7_1:56008522-56008541 Msa1025440:intron 35.0%
GGAAATCTAACACAAACAAG+GGG + chr7_1:56008644-56008663 Msa1025440:intron 35.0%
GGAAATCTAACACAAACAAG+GGG + chr7_1:56008644-56008663 Msa1025440:intron 35.0%
TATAGAGTGATACAGGTTAC+TGG + chr7_1:56008937-56008956 Msa1025440:intron 35.0%
AAAAAGGGAAGCAGATTATG+GGG - chr7_1:56008970-56008989 None:intergenic 35.0%
GTAGGAGAAGAAAAGAGTTA+TGG - chr7_1:56009017-56009036 None:intergenic 35.0%
TTAGAAATGTAGAGGAGAGT+AGG - chr7_1:56009035-56009054 None:intergenic 35.0%
CCAATCTGTTAGAAATGTAG+AGG - chr7_1:56009043-56009062 None:intergenic 35.0%
CCTCTACATTTCTAACAGAT+TGG + chr7_1:56009040-56009059 Msa1025440:intron 35.0%
GTATGGTTCATCCAGATAAA+AGG - chr7_1:56009329-56009348 None:intergenic 35.0%
! TAAGTGCTTGAAGGCTATTT+TGG + chr7_1:56009388-56009407 Msa1025440:intron 35.0%
!! TGGTCATGCCAAATTTTTAG+GGG + chr7_1:56009408-56009427 Msa1025440:intron 35.0%
TTGATTCTCCATTCTGTCTT+TGG + chr7_1:56009458-56009477 Msa1025440:intron 35.0%
GTTATCGATGGCCTTTATTA+TGG + chr7_1:56009607-56009626 Msa1025440:CDS 35.0%
TATCGATGGCCTTTATTATG+GGG + chr7_1:56009609-56009628 Msa1025440:CDS 35.0%
AGTCTGATACCCCATAATAA+AGG - chr7_1:56009621-56009640 None:intergenic 35.0%
ACAAAAGGAAATCAGCTAAG+AGG - chr7_1:56009721-56009740 None:intergenic 35.0%
AAATAAAGAGGGAGGACAAA+AGG - chr7_1:56009736-56009755 None:intergenic 35.0%
! TTTTGTCCTCCCTCTTTATT+TGG + chr7_1:56009735-56009754 Msa1025440:intron 35.0%
GAAAGATGAGCCAAATAAAG+AGG - chr7_1:56009748-56009767 None:intergenic 35.0%
! TTTGTGTTTGCCTTTTGTCA+AGG + chr7_1:56009775-56009794 Msa1025440:intron 35.0%
CAGAATGATACTGGAAACAT+TGG + chr7_1:56010000-56010019 Msa1025440:intron 35.0%
TTATAGTCCTGTATTGCTAC+TGG - chr7_1:56010280-56010299 None:intergenic 35.0%
TGTTAACTTTCTGCCATTGT+TGG + chr7_1:56010439-56010458 Msa1025440:three_prime_UTR 35.0%
GTTAACTTTCTGCCATTGTT+GGG + chr7_1:56010440-56010459 Msa1025440:three_prime_UTR 35.0%
TTAGAGTTGCTATCTTGTAC+TGG + chr7_1:56010527-56010546 Msa1025440:three_prime_UTR 35.0%
AACTAAGGCCTTTAACCAAT+TGG - chr7_1:56010619-56010638 None:intergenic 35.0%
!!! GGCCTTAGTTTCTTCTTTTT+TGG + chr7_1:56010629-56010648 Msa1025440:three_prime_UTR 35.0%
GAAGACGCCATTCTCAATTT+CGG - chr7_1:56003671-56003690 None:intergenic 40.0%
TTTGTGGTTAGTGTAGATGG+AGG - chr7_1:56003764-56003783 None:intergenic 40.0%
GCAATGAGGAAGAAAGTTTG+TGG - chr7_1:56003780-56003799 None:intergenic 40.0%
AGAATTGTCATCATCAGTGG+TGG - chr7_1:56003852-56003871 None:intergenic 40.0%
AAGAAGAGAAGAGGGTTTAG+GGG - chr7_1:56003891-56003910 None:intergenic 40.0%
GAAGAAGAGAAGAGGGTTTA+GGG - chr7_1:56003892-56003911 None:intergenic 40.0%
TTTCGGCAAATGTACCTATG+TGG - chr7_1:56004042-56004061 None:intergenic 40.0%
ACGTCATATAATTTGGGGGA+CGG - chr7_1:56004180-56004199 None:intergenic 40.0%
!! CCTGCCATAATGGGAATTTT+TGG - chr7_1:56004520-56004539 None:intergenic 40.0%
CCAAAAATTCCCATTATGGC+AGG + chr7_1:56004517-56004536 Msa1025440:intron 40.0%
!! GATGATGATGATGGTTAGCA+CGG + chr7_1:56004603-56004622 Msa1025440:intron 40.0%
! TAGTTTTCTCTAAACAGGGG+CGG + chr7_1:56004711-56004730 Msa1025440:intron 40.0%
CATTGAATACTTTCGACACG+AGG - chr7_1:56004777-56004796 None:intergenic 40.0%
ATTGGAAAGGAGGAAGATTC+CGG + chr7_1:56004847-56004866 Msa1025440:CDS 40.0%
TCCGGTCAAATTGAGGAAAA+TGG + chr7_1:56004865-56004884 Msa1025440:CDS 40.0%
ATGACAACTTTCCCTGGAAT+TGG + chr7_1:56004925-56004944 Msa1025440:intron 40.0%
GAAATTCTACGACCAATTCC+AGG - chr7_1:56004940-56004959 None:intergenic 40.0%
ATACCCAGGATAGTCATAAG+AGG - chr7_1:56005125-56005144 None:intergenic 40.0%
CTGTGTATGTACAACTTGTG+TGG + chr7_1:56005284-56005303 Msa1025440:intron 40.0%
! GTCGTGCATAACTGTTTTCA+TGG + chr7_1:56005503-56005522 Msa1025440:intron 40.0%
TTTCTTACATTGAGGGCCTT+TGG + chr7_1:56005904-56005923 Msa1025440:CDS 40.0%
GCAGCTAATGCAATCACAAT+TGG - chr7_1:56005937-56005956 None:intergenic 40.0%
! AGGCACTTTTCGTGGATTTA+AGG + chr7_1:56005960-56005979 Msa1025440:CDS 40.0%
AAGACACCTCTATATGCAGT+TGG + chr7_1:56005988-56006007 Msa1025440:CDS 40.0%
TACTTGCCAACTGCATATAG+AGG - chr7_1:56005997-56006016 None:intergenic 40.0%
GTAAGTAAATGGAGAGAGAG+AGG - chr7_1:56006036-56006055 None:intergenic 40.0%
TTATACATCCACATCAGCAC+TGG - chr7_1:56006546-56006565 None:intergenic 40.0%
AAGGCTTCTCATTAAATGGC+AGG + chr7_1:56006572-56006591 Msa1025440:intron 40.0%
!!! CTAACCCCTTTTGACTTTGA+TGG + chr7_1:56006846-56006865 Msa1025440:CDS 40.0%
!!! AACCCCTTTTGACTTTGATG+GGG + chr7_1:56006848-56006867 Msa1025440:CDS 40.0%
TTGCCCCATCAAAGTCAAAA+GGG - chr7_1:56006854-56006873 None:intergenic 40.0%
TTTGCCCCATCAAAGTCAAA+AGG - chr7_1:56006855-56006874 None:intergenic 40.0%
TTCAGCCAGCTAGTGTAATA+TGG + chr7_1:56006954-56006973 Msa1025440:intron 40.0%
! AAGCCTTATCATGCTAAGTG+GGG - chr7_1:56007023-56007042 None:intergenic 40.0%
! CAAGCCTTATCATGCTAAGT+GGG - chr7_1:56007024-56007043 None:intergenic 40.0%
TATCAAGCTCAGTTGAAGCA+TGG - chr7_1:56007178-56007197 None:intergenic 40.0%
ATTAGATGAGTTCGGCAACA+AGG - chr7_1:56007363-56007382 None:intergenic 40.0%
TTGTTGCCGAACTCATCTAA+TGG + chr7_1:56007362-56007381 Msa1025440:intron 40.0%
TGTTGCCGAACTCATCTAAT+GGG + chr7_1:56007363-56007382 Msa1025440:intron 40.0%
TATAAACACAGCCAAAGTCC+TGG - chr7_1:56007830-56007849 None:intergenic 40.0%
TCGTCTGGATTCATGTGATA+TGG - chr7_1:56008102-56008121 None:intergenic 40.0%
GCTGCATACAATACACCAAA+TGG + chr7_1:56008518-56008537 Msa1025440:intron 40.0%
GCATACAATACACCAAATGG+TGG + chr7_1:56008521-56008540 Msa1025440:intron 40.0%
ATTTCCCAGTGAGTAACTAC+TGG - chr7_1:56008893-56008912 None:intergenic 40.0%
!! TAACAGATTGGTTTAGGAGC+TGG + chr7_1:56009052-56009071 Msa1025440:intron 40.0%
! TAGCACAGACTCAGAAGTTT+TGG + chr7_1:56009129-56009148 Msa1025440:CDS 40.0%
TGTTGCTCAGTCAGGTATAT+TGG + chr7_1:56009153-56009172 Msa1025440:CDS 40.0%
AAACATTCGCAGACAGTGTA+TGG - chr7_1:56009346-56009365 None:intergenic 40.0%
! ACTGTCTGCGAATGTTTTTC+TGG + chr7_1:56009349-56009368 Msa1025440:intron 40.0%
AGGTACGACCCCTAAAAATT+TGG - chr7_1:56009419-56009438 None:intergenic 40.0%
ACATGCATCCAAAGACAGAA+TGG - chr7_1:56009469-56009488 None:intergenic 40.0%
ATCTCAACCAGTGAATGCTT+TGG + chr7_1:56009579-56009598 Msa1025440:CDS 40.0%
! ACAAATGCCAAAGCATTCAC+TGG - chr7_1:56009589-56009608 None:intergenic 40.0%
!! GCTTTGGCATTTGTTATCGA+TGG + chr7_1:56009595-56009614 Msa1025440:CDS 40.0%
GACAAAAGGCAAACACAAAG+AGG - chr7_1:56009774-56009793 None:intergenic 40.0%
! GTTTGCCTTTTGTCAAGGAT+AGG + chr7_1:56009780-56009799 Msa1025440:intron 40.0%
TAGCACCTATCCTTGACAAA+AGG - chr7_1:56009788-56009807 None:intergenic 40.0%
! TTCTTCAGTTTTCATGCTGG+TGG + chr7_1:56009819-56009838 Msa1025440:CDS 40.0%
GATCCTAGCACAAAGAACAA+TGG + chr7_1:56009977-56009996 Msa1025440:intron 40.0%
GAACAATGGCAGAATGATAC+TGG + chr7_1:56009991-56010010 Msa1025440:intron 40.0%
CTTTATCTATCCTACTGAGC+AGG + chr7_1:56010074-56010093 Msa1025440:intron 40.0%
TTAATCGAAACCTGCTCAGT+AGG - chr7_1:56010087-56010106 None:intergenic 40.0%
! TTCAGGTTAAGCAGCAAAAG+TGG + chr7_1:56010126-56010145 Msa1025440:intron 40.0%
TCATACCAGATCATATCCCA+CGG - chr7_1:56010153-56010172 None:intergenic 40.0%
GCTTATCAGTATCCTCACAT+TGG - chr7_1:56010210-56010229 None:intergenic 40.0%
! TGGATTCTCTGTAAGAGCAT+GGG - chr7_1:56010260-56010279 None:intergenic 40.0%
AGAGAATCCAGTAGCAATAC+AGG + chr7_1:56010270-56010289 Msa1025440:three_prime_UTR 40.0%
CTCTAAGTAGAGAGTTTGAG+AGG + chr7_1:56010353-56010372 Msa1025440:three_prime_UTR 40.0%
ACGCCATTCTCAATTTCGGA+GGG - chr7_1:56003667-56003686 None:intergenic 45.0%
!!! GTGGTGGTGGGAATTTTGTT+GGG - chr7_1:56003833-56003852 None:intergenic 45.0%
ATTGTCATCATCAGTGGTGG+TGG - chr7_1:56003849-56003868 None:intergenic 45.0%
AGAAGAGAAGAGGGTTTAGG+GGG - chr7_1:56003890-56003909 None:intergenic 45.0%
GGAAGAAGAGAAGAGGGTTT+AGG - chr7_1:56003893-56003912 None:intergenic 45.0%
! GTGTCGATCAATGAGGCAAT+TGG - chr7_1:56004007-56004026 None:intergenic 45.0%
CATATAATTTGGGGGACGGA+GGG - chr7_1:56004176-56004195 None:intergenic 45.0%
TCATATAATTTGGGGGACGG+AGG - chr7_1:56004177-56004196 None:intergenic 45.0%
TGTCAACTTAACAGGCTACG+TGG + chr7_1:56004394-56004413 Msa1025440:intron 45.0%
!! GCACGGATTGACTTTTCTCT+AGG + chr7_1:56004620-56004639 Msa1025440:intron 45.0%
CGGTTGAATTAGCTGCAGTT+GGG + chr7_1:56004731-56004750 Msa1025440:CDS 45.0%
GGTTGAATTAGCTGCAGTTG+GGG + chr7_1:56004732-56004751 Msa1025440:CDS 45.0%
TACTACATCCTTTGTTGCCG+AGG + chr7_1:56004813-56004832 Msa1025440:CDS 45.0%
GGAAGATTCCGGTCAAATTG+AGG + chr7_1:56004858-56004877 Msa1025440:CDS 45.0%
AGTACGATGACAACTTTCCC+TGG + chr7_1:56004919-56004938 Msa1025440:intron 45.0%
! ACTTCTTTAGCACTTGCTGC+AGG + chr7_1:56005056-56005075 Msa1025440:CDS 45.0%
GAAACTGTCGCACTTTCACT+TGG + chr7_1:56005092-56005111 Msa1025440:CDS 45.0%
TGGACCTCTTATGACTATCC+TGG + chr7_1:56005118-56005137 Msa1025440:CDS 45.0%
GGACCTCTTATGACTATCCT+GGG + chr7_1:56005119-56005138 Msa1025440:CDS 45.0%
!! TGTGCTTCCAGTGTTTTGAG+TGG - chr7_1:56005243-56005262 None:intergenic 45.0%
AACTTGTGTGGAGACTAGAG+AGG + chr7_1:56005296-56005315 Msa1025440:intron 45.0%
CGCTATGCATAGCATAGAAC+TGG - chr7_1:56005788-56005807 None:intergenic 45.0%
TGTTCAGCAGGTTCACGTAT+TGG - chr7_1:56005883-56005902 None:intergenic 45.0%
! CACAATTGGTAGAGCACCAA+AGG - chr7_1:56005923-56005942 None:intergenic 45.0%
GTGATTGCATTAGCTGCACA+AGG + chr7_1:56005940-56005959 Msa1025440:CDS 45.0%
TCTCATTAAATGGCAGGTGC+TGG + chr7_1:56006578-56006597 Msa1025440:intron 45.0%
CTCATTAAATGGCAGGTGCT+GGG + chr7_1:56006579-56006598 Msa1025440:intron 45.0%
! CTTTGTGGTCTTGGCATTAG+TGG + chr7_1:56006641-56006660 Msa1025440:CDS 45.0%
CAGTGATCTCTGAGTATGTC+AGG + chr7_1:56006678-56006697 Msa1025440:intron 45.0%
CTCTGAGTATGTCAGGAATG+CGG + chr7_1:56006685-56006704 Msa1025440:intron 45.0%
TGCCCCATCAAAGTCAAAAG+GGG - chr7_1:56006853-56006872 None:intergenic 45.0%
CTTATCATGCTAAGTGGGGT+CGG - chr7_1:56007019-56007038 None:intergenic 45.0%
! CCAAGCCTTATCATGCTAAG+TGG - chr7_1:56007025-56007044 None:intergenic 45.0%
CCACTTAGCATGATAAGGCT+TGG + chr7_1:56007022-56007041 Msa1025440:intron 45.0%
GTTGCCGAACTCATCTAATG+GGG + chr7_1:56007364-56007383 Msa1025440:intron 45.0%
TCTGCTAATTGCCAGGACTT+TGG + chr7_1:56007816-56007835 Msa1025440:CDS 45.0%
AACATCTTTGGCAGCTAACC+AGG + chr7_1:56007864-56007883 Msa1025440:CDS 45.0%
ACATCTTTGGCAGCTAACCA+GGG + chr7_1:56007865-56007884 Msa1025440:CDS 45.0%
! CAAATTTGATGGCCTGCCAT+AGG - chr7_1:56007898-56007917 None:intergenic 45.0%
TGGCGAGTATGGTACGATAT+TGG - chr7_1:56008291-56008310 None:intergenic 45.0%
CATAGTCATGTTGGCGAGTA+TGG - chr7_1:56008302-56008321 None:intergenic 45.0%
TTCATCAAGAGGGGTAACCT+TGG + chr7_1:56008409-56008428 Msa1025440:intron 45.0%
GTTGTTGTCATGTGACTGGA+AGG + chr7_1:56008445-56008464 Msa1025440:intron 45.0%
! TTACACAAGAGGTTGGTTCC+AGG - chr7_1:56008485-56008504 None:intergenic 45.0%
CATCACTAAAAAGGGCAACC+CGG - chr7_1:56008588-56008607 None:intergenic 45.0%
GCTACATAGTCTACCAGTAG+TGG + chr7_1:56008607-56008626 Msa1025440:intron 45.0%
CATCACTAAAAAGGGCAACC+CGG - chr7_1:56008588-56008607 None:intergenic 45.0%
GCTACATAGTCTACCAGTAG+TGG + chr7_1:56008607-56008626 Msa1025440:intron 45.0%
TCTTGCCAGTAGTTACTCAC+TGG + chr7_1:56008885-56008904 Msa1025440:CDS 45.0%
CTTGCCAGTAGTTACTCACT+GGG + chr7_1:56008886-56008905 Msa1025440:CDS 45.0%
!! GTTTTGGATGTTGCTCAGTC+AGG + chr7_1:56009145-56009164 Msa1025440:CDS 45.0%
CAGCAACAAACTGCACATGT+GGG - chr7_1:56009558-56009577 None:intergenic 45.0%
! TGAGTATGCTGCTTACTCGA+TGG + chr7_1:56009642-56009661 Msa1025440:CDS 45.0%
GATGAGCCAAATAAAGAGGG+AGG - chr7_1:56009744-56009763 None:intergenic 45.0%
TGTCAAGGATAGGTGCTAGT+TGG + chr7_1:56009790-56009809 Msa1025440:intron 45.0%
! GGCAGGATTGTTTCTCTTCA+TGG + chr7_1:56009873-56009892 Msa1025440:CDS 45.0%
CTGCCATTGTTCTTTGTGCT+AGG - chr7_1:56009983-56010002 None:intergenic 45.0%
TCAAGAGCTTCTCCAATGTG+AGG + chr7_1:56010195-56010214 Msa1025440:three_prime_UTR 45.0%
! AGCATGGGGATTTGGTATGT+AGG - chr7_1:56010245-56010264 None:intergenic 45.0%
! TCTGTAAGAGCATGGGGATT+TGG - chr7_1:56010253-56010272 None:intergenic 45.0%
! GGATTCTCTGTAAGAGCATG+GGG - chr7_1:56010259-56010278 None:intergenic 45.0%
CTGGATTCTCTGTAAGAGCA+TGG - chr7_1:56010261-56010280 None:intergenic 45.0%
TTGAGAGGCTAAATGAGCAC+AGG + chr7_1:56010368-56010387 Msa1025440:three_prime_UTR 45.0%
TGAGAGGCTAAATGAGCACA+GGG + chr7_1:56010369-56010388 Msa1025440:three_prime_UTR 45.0%
TGAATGTCAGACCTGTAGCA+TGG + chr7_1:56010406-56010425 Msa1025440:three_prime_UTR 45.0%
AGACTTGACTTCCATGCTAC+AGG - chr7_1:56010420-56010439 None:intergenic 45.0%
GCTCCCTCCGAAATTGAGAA+TGG + chr7_1:56003661-56003680 Msa1025440:CDS 50.0%
GACGCCATTCTCAATTTCGG+AGG - chr7_1:56003668-56003687 None:intergenic 50.0%
!! GTGGTGGGAATTTTGTTGGG+TGG - chr7_1:56003830-56003849 None:intergenic 50.0%
!!! GGTGGTGGTGGGAATTTTGT+TGG - chr7_1:56003834-56003853 None:intergenic 50.0%
!! TCATCATCAGTGGTGGTGGT+GGG - chr7_1:56003845-56003864 None:intergenic 50.0%
! GAAGGCTGTGTCGATCAATG+AGG - chr7_1:56004014-56004033 None:intergenic 50.0%
TTGATCGACACAGCCTTCGT+CGG + chr7_1:56004016-56004035 Msa1025440:CDS 50.0%
GCTACGTGGCGTGAGTTTAT+TGG + chr7_1:56004408-56004427 Msa1025440:intron 50.0%
ATTGGATCACGCACGATGTC+AGG + chr7_1:56004426-56004445 Msa1025440:intron 50.0%
TTGGATCACGCACGATGTCA+GGG + chr7_1:56004427-56004446 Msa1025440:intron 50.0%
GCGGTTGAATTAGCTGCAGT+TGG + chr7_1:56004730-56004749 Msa1025440:CDS 50.0%
TCCAATCAGCGCTTGTTCCT+CGG - chr7_1:56004833-56004852 None:intergenic 50.0%
!! GGAACAAGCGCTGATTGGAA+AGG + chr7_1:56004834-56004853 Msa1025440:CDS 50.0%
!! ACAAGCGCTGATTGGAAAGG+AGG + chr7_1:56004837-56004856 Msa1025440:CDS 50.0%
GGAAAGGAGCTTCTTGCGTT+GGG - chr7_1:56005027-56005046 None:intergenic 50.0%
AGGAAAGGAGCTTCTTGCGT+TGG - chr7_1:56005028-56005047 None:intergenic 50.0%
! TTAGCACTTGCTGCAGGTCT+TGG + chr7_1:56005062-56005081 Msa1025440:CDS 50.0%
GACATACAGCAGCTATACCC+AGG - chr7_1:56005139-56005158 None:intergenic 50.0%
TGTGGAGACTAGAGAGGTAG+AGG + chr7_1:56005302-56005321 Msa1025440:intron 50.0%
GACTAGAGAGGTAGAGGTAG+AGG + chr7_1:56005308-56005327 Msa1025440:intron 50.0%
AGAGGTAGAGGTAGAGGTAG+AGG + chr7_1:56005314-56005333 Msa1025440:intron 50.0%
AGAGGTAGAGGTAGAGGTAG+AGG + chr7_1:56005314-56005333 Msa1025440:intron 50.0%
CGACCCCACTTAGCATGATA+AGG + chr7_1:56007017-56007036 Msa1025440:intron 50.0%
AGCTCAGTTGAAGCATGGCT+AGG - chr7_1:56007173-56007192 None:intergenic 50.0%
TAGGTGGTCTGCTAATTGCC+AGG + chr7_1:56007809-56007828 Msa1025440:intron 50.0%
TAACCAGGGCCCTATACCTA+TGG + chr7_1:56007879-56007898 Msa1025440:CDS 50.0%
GATGGCCTGCCATAGGTATA+GGG - chr7_1:56007891-56007910 None:intergenic 50.0%
TGATGGCCTGCCATAGGTAT+AGG - chr7_1:56007892-56007911 None:intergenic 50.0%
GGCAGGCCATCAAATTTGCA+TGG + chr7_1:56007900-56007919 Msa1025440:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr7_1:56008429-56008448 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG + chr7_1:56008451-56008470 Msa1025440:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG + chr7_1:56008452-56008471 Msa1025440:intron 50.0%
TTATTAGTGGGACCCCTTCC+CGG + chr7_1:56008675-56008694 Msa1025440:intron 50.0%
CCAGCAACAAACTGCACATG+TGG - chr7_1:56009559-56009578 None:intergenic 50.0%
!! CCACATGTGCAGTTTGTTGC+TGG + chr7_1:56009556-56009575 Msa1025440:intron 50.0%
ACTCCAGGAAGTCCAACTAC+TGG - chr7_1:56009850-56009869 None:intergenic 50.0%
TAGTTGGACTTCCTGGAGTC+TGG + chr7_1:56009851-56009870 Msa1025440:CDS 50.0%
AGTTGGACTTCCTGGAGTCT+GGG + chr7_1:56009852-56009871 Msa1025440:CDS 50.0%
ATGGCATTGCGTGTTCTAGC+TGG + chr7_1:56009892-56009911 Msa1025440:CDS 50.0%
! TGCGTGTTCTAGCTGGAGTT+TGG + chr7_1:56009899-56009918 Msa1025440:CDS 50.0%
! GTGTTCTAGCTGGAGTTTGG+AGG + chr7_1:56009902-56009921 Msa1025440:CDS 50.0%
TAAGCAGCAAAAGTGGTCCG+TGG + chr7_1:56010133-56010152 Msa1025440:CDS 50.0%
AAGCAGCAAAAGTGGTCCGT+GGG + chr7_1:56010134-56010153 Msa1025440:CDS 50.0%
AGGCTAAATGAGCACAGGGA+TGG + chr7_1:56010373-56010392 Msa1025440:three_prime_UTR 50.0%
CGAAGAGGAGCAGAGCAATG+AGG - chr7_1:56003794-56003813 None:intergenic 55.0%
GGAGAAGCTCGAAGTCGAAG+AGG - chr7_1:56003809-56003828 None:intergenic 55.0%
!! GTCATCATCAGTGGTGGTGG+TGG - chr7_1:56003846-56003865 None:intergenic 55.0%
AGAGAAGAGGGTTTAGGGGG+TGG - chr7_1:56003887-56003906 None:intergenic 55.0%
GGCAATTGGATCAGCTGCCA+AGG - chr7_1:56003993-56004012 None:intergenic 55.0%
TGTACCTATGTGGCCGACGA+AGG - chr7_1:56004032-56004051 None:intergenic 55.0%
CGCTTGTTCCTCGGCAACAA+AGG - chr7_1:56004824-56004843 None:intergenic 55.0%
GTCGCACTTTCACTTGGCTC+TGG + chr7_1:56005098-56005117 Msa1025440:CDS 55.0%
!! GCTGCACAAGGCACTTTTCG+TGG + chr7_1:56005952-56005971 Msa1025440:CDS 55.0%
TCCTTGGCGGAGATGATCCA+TGG + chr7_1:56006210-56006229 Msa1025440:intron 55.0%
ACCATGGATCATCTCCGCCA+AGG - chr7_1:56006214-56006233 None:intergenic 55.0%
!! CATCCACATCAGCACTGGCA+GGG - chr7_1:56006541-56006560 None:intergenic 55.0%
!! ACATCCACATCAGCACTGGC+AGG - chr7_1:56006542-56006561 None:intergenic 55.0%
GCTTACCGATGCTCTAGCAC+TGG + chr7_1:56007945-56007964 Msa1025440:CDS 55.0%
ACCAGCCAGTGCTAGAGCAT+CGG - chr7_1:56007953-56007972 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr7_1:56008464-56008483 Msa1025440:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr7_1:56008561-56008580 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr7_1:56008562-56008581 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr7_1:56008566-56008585 Msa1025440:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr7_1:56008561-56008580 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr7_1:56008562-56008581 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr7_1:56008566-56008585 Msa1025440:intron 55.0%
GCTCCAGTAGTTGGACTTCC+TGG + chr7_1:56009844-56009863 Msa1025440:CDS 55.0%
AACAATCCTGCCCAGACTCC+AGG - chr7_1:56009865-56009884 None:intergenic 55.0%
GTGGTCCGTGGGATATGATC+TGG + chr7_1:56010145-56010164 Msa1025440:CDS 55.0%
CAAGGCAACAGCAGCAGGCA+AGG - chr7_1:56003975-56003994 None:intergenic 60.0%
CTTGCCTGCTGCTGTTGCCT+TGG + chr7_1:56003973-56003992 Msa1025440:CDS 60.0%
ACAGCCTTCGTCGGCCACAT+AGG + chr7_1:56004025-56004044 Msa1025440:CDS 60.0%
!! GCCGAGGAACAAGCGCTGAT+TGG + chr7_1:56004829-56004848 Msa1025440:CDS 60.0%
GCTAAGTGGGGTCGGCTACA+TGG - chr7_1:56007011-56007030 None:intergenic 60.0%
CTGCCATAGGTATAGGGCCC+TGG - chr7_1:56007885-56007904 None:intergenic 60.0%
CAGGGCCCTATACCTATGGC+AGG + chr7_1:56007883-56007902 Msa1025440:CDS 60.0%
!! ACCGATGCTCTAGCACTGGC+TGG + chr7_1:56007949-56007968 Msa1025440:CDS 60.0%
!! TGCTCTAGCACTGGCTGGTC+AGG + chr7_1:56007954-56007973 Msa1025440:CDS 60.0%
!! CTAGCACTGGCTGGTCAGGT+TGG + chr7_1:56007958-56007977 Msa1025440:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr7_1:56008418-56008437 Msa1025440:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr7_1:56008534-56008553 Msa1025440:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr7_1:56008567-56008586 Msa1025440:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr7_1:56008567-56008586 Msa1025440:intron 60.0%
CTGGTGGCTGCTCCAGTAGT+TGG + chr7_1:56009835-56009854 Msa1025440:CDS 60.0%
GCTGCCAAGGCAACAGCAGC+AGG - chr7_1:56003980-56003999 None:intergenic 65.0%
!! TCAGCACTGGCAGGGCTGCA+AGG - chr7_1:56006533-56006552 None:intergenic 65.0%
!! CAGCCCTGCCAGTGCTGATG+TGG + chr7_1:56006535-56006554 Msa1025440:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr7_1:56008536-56008555 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr7_1:56008549-56008568 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr7_1:56008550-56008569 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr7_1:56008549-56008568 Msa1025440:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr7_1:56008550-56008569 Msa1025440:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr7_1:56008549-56008568 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr7_1:56008550-56008569 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr7_1:56008549-56008568 Msa1025440:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr7_1:56008550-56008569 Msa1025440:intron 65.0%
GGACTTCCTGGAGTCTGGGC+AGG + chr7_1:56009856-56009875 Msa1025440:CDS 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr7_1:56008551-56008570 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr7_1:56008555-56008574 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr7_1:56008556-56008575 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr7_1:56008551-56008570 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr7_1:56008555-56008574 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr7_1:56008556-56008575 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 56003617 56010726 56003617 ID=Msa1025440;Name=Msa1025440
chr7_1 mRNA 56003617 56010726 56003617 ID=Msa1025440-mRNA-1;Parent=Msa1025440;Name=Msa1025440-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.90|0.83|1|0.90|0.91|12|535|586
chr7_1 exon 56003617 56004046 56003617 ID=Msa1025440-mRNA-1:exon:11225;Parent=Msa1025440-mRNA-1
chr7_1 exon 56004728 56004886 56004728 ID=Msa1025440-mRNA-1:exon:11226;Parent=Msa1025440-mRNA-1
chr7_1 exon 56005018 56005151 56005018 ID=Msa1025440-mRNA-1:exon:11227;Parent=Msa1025440-mRNA-1
chr7_1 exon 56005874 56006081 56005874 ID=Msa1025440-mRNA-1:exon:11228;Parent=Msa1025440-mRNA-1
chr7_1 exon 56006594 56006690 56006594 ID=Msa1025440-mRNA-1:exon:11229;Parent=Msa1025440-mRNA-1
chr7_1 exon 56006797 56006897 56006797 ID=Msa1025440-mRNA-1:exon:11230;Parent=Msa1025440-mRNA-1
chr7_1 exon 56007812 56007975 56007812 ID=Msa1025440-mRNA-1:exon:11231;Parent=Msa1025440-mRNA-1
chr7_1 exon 56008880 56008951 56008880 ID=Msa1025440-mRNA-1:exon:11232;Parent=Msa1025440-mRNA-1
chr7_1 exon 56009058 56009174 56009058 ID=Msa1025440-mRNA-1:exon:11233;Parent=Msa1025440-mRNA-1
chr7_1 exon 56009568 56009663 56009568 ID=Msa1025440-mRNA-1:exon:11234;Parent=Msa1025440-mRNA-1
chr7_1 exon 56009802 56009923 56009802 ID=Msa1025440-mRNA-1:exon:11235;Parent=Msa1025440-mRNA-1
chr7_1 exon 56010131 56010726 56010131 ID=Msa1025440-mRNA-1:exon:11236;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56003617 56004046 56003617 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56004728 56004886 56004728 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56005018 56005151 56005018 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56005874 56006081 56005874 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56006594 56006690 56006594 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56006797 56006897 56006797 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56007812 56007975 56007812 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56008880 56008951 56008880 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56009058 56009174 56009058 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56009568 56009663 56009568 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56009802 56009923 56009802 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 CDS 56010131 56010191 56010131 ID=Msa1025440-mRNA-1:cds;Parent=Msa1025440-mRNA-1
chr7_1 three_prime_UTR 56010192 56010726 56010192 ID=Msa1025440-mRNA-1:three_prime_utr;Parent=Msa1025440-mRNA-1
Gene Sequence

>Msa1025440

ATGGTTTGTTTGGCTTTGCTTTGCAAGCAAAACTCAGATATTATGCTCCCTCCGAAATTGAGAATGGCGTCTTCTTCTTCTTCTTCTACATATTTTCTTTGCAATTTCCATCACATTCCATCTTTAAAATCCCCAACATTAAAACCTCCATCTACACTAACCACAAACTTTCTTCCTCATTGCTCTGCTCCTCTTCGACTTCGAGCTTCTCCACCCAACAAAATTCCCACCACCACCACTGATGATGACAATTCTCTTGATCAAACTCCACCCCCTAAACCCTCTTCTCTTCTTCCAAATTTCAGAAATGGTTGGTTTAAATTTGATGAACTTGGAATGGATATGCTGTCTATTGCCTTGCCTGCTGCTGTTGCCTTGGCAGCTGATCCAATTGCCTCATTGATCGACACAGCCTTCGTCGGCCACATAGGGGCGGTTGAATTAGCTGCAGTTGGGGTTTCAGCTTCTGTGTTTAACCTCGTGTCGAAAGTATTCAATGTTCCTTTACTTAATATTACTACATCCTTTGTTGCCGAGGAACAAGCGCTGATTGGAAAGGAGGAAGATTCCGGTCAAATTGAGGAAAATGGAAAGGCCCAACGCAAGAAGCTCCTTTCCTCAGTATCAACTTCTTTAGCACTTGCTGCAGGTCTTGGAATTGCTGAAACTGTCGCACTTTCACTTGGCTCTGGACCTCTTATGACTATCCTGGGTATAGCTGCTGACTCTCCAATACGTGAACCTGCTGAACATTTTCTTACATTGAGGGCCTTTGGTGCTCTACCAATTGTGATTGCATTAGCTGCACAAGGCACTTTTCGTGGATTTAAGGATACAAAGACACCTCTATATGCAGTTGGCAAGTATTGCAGCAGCTTTCTTCCTCTCTCTCTCCATTTACTTACTCATAACTTACACACAGTTGATTCCAGTGCTGGGAACTTTCTTATTGTGATATTGGATCCAATATTGATATTTCTTTGTGGTCTTGGCATTAGTGGTGCTGCAATTGCTACAGTGATCTCTGAATATTTAATAGCTTTCATTCTTCTATGGAATTTGAGTGGCAAAGTTCTGCTAACCCCTTTTGACTTTGATGGGGCAAAGTTTTTCAGCTATCTGAAATCTGGTGGTCTGCTAATTGCCAGGACTTTGGCTGTGTTTATAACTATGACACTGACAACATCTTTGGCAGCTAACCAGGGCCCTATACCTATGGCAGGCCATCAAATTTGCATGGAAGTTTGGTTGTCTATATCTTTGCTTACCGATGCTCTAGCACTGGCTGGTCAGTCTCTTCTTGCCAGTAGTTACTCACTGGGAAATTATGAGCAAGCACGCCTCATTATATATAGAGTGATACAGATTGGTTTAGGAGCTGGAGTCACTTTGTCGATGATCTTATTTTTTGGGTTTGGACCATTTTCTAGTTTATTTAGCACAGACTCAGAAGTTTTGGATGTTGCTCAGTCAGGTATATTGTTTGTTGCTGGATCTCAACCAGTGAATGCTTTGGCATTTGTTATCGATGGCCTTTATTATGGGGTATCAGACTTTGAGTATGCTGCTTACTCGATGGTGCTAGTTGGACTAATTTCTTCAGTTTTCATGCTGGTGGCTGCTCCAGTAGTTGGACTTCCTGGAGTCTGGGCAGGATTGTTTCTCTTCATGGCATTGCGTGTTCTAGCTGGAGTTTGGAGGTTAAGCAGCAAAAGTGGTCCGTGGGATATGATCTGGTATGAAAATAGAGCAGAAGACTGA

Protein sequence

>Msa1025440

MVCLALLCKQNSDIMLPPKLRMASSSSSSTYFLCNFHHIPSLKSPTLKPPSTLTTNFLPHCSAPLRLRASPPNKIPTTTTDDDNSLDQTPPPKPSSLLPNFRNGWFKFDELGMDMLSIALPAAVALAADPIASLIDTAFVGHIGAVELAAVGVSASVFNLVSKVFNVPLLNITTSFVAEEQALIGKEEDSGQIEENGKAQRKKLLSSVSTSLALAAGLGIAETVALSLGSGPLMTILGIAADSPIREPAEHFLTLRAFGALPIVIALAAQGTFRGFKDTKTPLYAVGKYCSSFLPLSLHLLTHNLHTVDSSAGNFLIVILDPILIFLCGLGISGAAIATVISEYLIAFILLWNLSGKVLLTPFDFDGAKFFSYLKSGGLLIARTLAVFITMTLTTSLAANQGPIPMAGHQICMEVWLSISLLTDALALAGQSLLASSYSLGNYEQARLIIYRVIQIGLGAGVTLSMILFFGFGPFSSLFSTDSEVLDVAQSGILFVAGSQPVNALAFVIDGLYYGVSDFEYAAYSMVLVGLISSVFMLVAAPVVGLPGVWAGLFLFMALRVLAGVWRLSSKSGPWDMIWYENRAED*