AlfalfaGEDB | Msa1215940

M. sativa cultivar zhongmu-4 / Msa1215940

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015750 GO:0015751 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0042882 GO:0042900 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1902600 GO:1904659
PFAM: PF00083.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215940	sp\|O04249\|STP7_ARATH	78.571	490	105	0	4	493	10	499	0.0	822

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215940	A0A072TGU8	98.986	493	5	0	1	493	1	493	0.0	987

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa1215940	0.822460	2.340931e-53	-8.615850e-47
Msa0008850	Msa1215940	0.823781	1.151221e-53	-8.615850e-47
Msa0017120	Msa1215940	0.830216	3.327150e-55	-8.615850e-47
Msa0024680	Msa1215940	0.817269	3.600369e-52	-8.615850e-47
Msa0027540	Msa1215940	0.845197	4.720063e-59	-8.615850e-47
Msa0028060	Msa1215940	0.802111	6.549400e-49	-8.615850e-47
Msa0030000	Msa1215940	0.822485	2.310159e-53	-8.615850e-47
Msa0030730	Msa1215940	0.809503	1.832395e-50	-8.615850e-47
Msa0037820	Msa1215940	0.812254	4.649512e-51	-8.615850e-47
Msa0042220	Msa1215940	0.811165	8.024725e-51	-8.615850e-47

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1215940	MtrunA17_Chr4g0065311	98.986	493	5	0	1	493	1	493	987
Msa1215940	MtrunA17_Chr4g0065324	81.437	501	85	1	1	493	1	501	844
Msa1215940	MtrunA17_Chr5g0445601	83.845	489	79	0	5	493	11	499	833
Msa1215940	MtrunA17_Chr7g0257631	83.231	489	82	0	5	493	45	533	833
Msa1215940	MtrunA17_Chr6g0486681	57.927	492	205	2	3	492	8	499	613
Msa1215940	MtrunA17_Chr6g0486671	57.927	492	205	2	3	492	8	499	613
Msa1215940	MtrunA17_Chr8g0390261	58.763	485	196	3	9	490	14	497	608
Msa1215940	MtrunA17_Chr8g0390141	59.548	487	193	3	9	492	14	499	607
Msa1215940	MtrunA17_Chr3g0078971	59.834	483	191	3	13	492	15	497	606
Msa1215940	MtrunA17_Chr5g0394341	57.407	486	202	4	12	492	13	498	603

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1215940	AT4G02050.2	78.571	490	105	0	4	493	10	499	822
Msa1215940	AT4G02050.1	78.571	490	105	0	4	493	10	499	822
Msa1215940	AT5G26340.1	59.259	486	193	4	12	492	14	499	614
Msa1215940	AT1G77210.2	58.471	484	199	2	9	490	14	497	604
Msa1215940	AT1G77210.1	58.471	484	199	2	9	490	14	497	604
Msa1215940	AT3G19940.1	56.250	480	207	2	17	493	21	500	585
Msa1215940	AT1G50310.1	56.757	481	204	3	17	493	21	501	581
Msa1215940	AT1G11260.1	56.701	485	205	3	13	492	15	499	561
Msa1215940	AT5G23270.1	56.405	484	206	4	12	490	15	498	555
Msa1215940	AT3G19930.1	54.639	485	217	2	12	493	14	498	549

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

Find 137 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGATACAGGCCAGAGT+TGG	0.608420	8_1:+77397190	Msa1215940:CDS
AAAATAAGTATCATAGTTGG+TGG	0.557516	8_1:+77396221	Msa1215940:CDS
AAAATTCAAGAAATGGAGGA+TGG	0.547705	8_1:+77394780	Msa1215940:exon
AAACAGAGGTAAATGCTGCG+AGG	0.727291	8_1:-77396136	None:intergenic
AAACTTGAATGTACATAGAA+GGG	0.545350	8_1:-77397899	None:intergenic
AACAACAAATATGGTCATGA+TGG	0.510817	8_1:-77397953	None:intergenic
AACACACAATATTAAACCAT+GGG	0.539973	8_1:+77396935	Msa1215940:CDS
AACTGTTATACTCTGCCCGG+CGG	0.700887	8_1:-77397830	None:intergenic
AAGGAAAATTCAAGAAATGG+AGG	0.545308	8_1:+77394776	Msa1215940:exon
AATACAAATGATTATATGCC+AGG	0.482659	8_1:+77397424	Msa1215940:CDS

Showing 1 to 10 of 137 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAATCCACATGATTTAG+TGG	+	chr8_1:77394655-77394674	Msa1215940:five_prime_UTR	30.0%
AAGGAAAATTCAAGAAATGG+AGG	+	chr8_1:77394776-77394795	Msa1215940:exon	30.0%
AAAATTCAAGAAATGGAGGA+TGG	+	chr8_1:77394780-77394799	Msa1215940:exon	30.0%
ATAGAAGAAGCTAAAAGTGA+AGG	-	chr8_1:77394970-77394989	None:intergenic	30.0%
TGACGTAAGACTTAAGAATA+AGG	+	chr8_1:77395087-77395106	Msa1215940:intron	30.0%
AATAACTGAACAGTAGACAA+TGG	-	chr8_1:77395204-77395223	None:intergenic	30.0%
GTATAATTAAAACCAGATCC+AGG	+	chr8_1:77395466-77395485	Msa1215940:intron	30.0%
ATAACGTTAACATTCTGCTA+TGG	-	chr8_1:77395611-77395630	None:intergenic	30.0%
TAAGTTACGGACAATAATAG+CGG	-	chr8_1:77395793-77395812	None:intergenic	30.0%
CTATCAACGTGAATAAGTTA+CGG	-	chr8_1:77395806-77395825	None:intergenic	30.0%

Showing 1 to 10 of 245 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	77394644	77398221	77394644	ID=Msa1215940;Name=Msa1215940
chr8_1	mRNA	77394644	77398221	77394644	ID=Msa1215940-mRNA-1;Parent=Msa1215940;Name=Msa1215940-mRNA-1;_AED=0.30;_eAED=0.30;_QI=148\|1\|0.75\|1\|1\|1\|4\|156\|493
chr8_1	exon	77394644	77394918	77394644	ID=Msa1215940-mRNA-1:exon:26769;Parent=Msa1215940-mRNA-1
chr8_1	exon	77396030	77396349	77396030	ID=Msa1215940-mRNA-1:exon:26770;Parent=Msa1215940-mRNA-1
chr8_1	exon	77396819	77397445	77396819	ID=Msa1215940-mRNA-1:exon:26771;Parent=Msa1215940-mRNA-1
chr8_1	exon	77397658	77398221	77397658	ID=Msa1215940-mRNA-1:exon:26772;Parent=Msa1215940-mRNA-1
chr8_1	five_prime_UTR	77394644	77394791	77394644	ID=Msa1215940-mRNA-1:five_prime_utr;Parent=Msa1215940-mRNA-1
chr8_1	CDS	77394792	77394918	77394792	ID=Msa1215940-mRNA-1:cds;Parent=Msa1215940-mRNA-1
chr8_1	CDS	77396030	77396349	77396030	ID=Msa1215940-mRNA-1:cds;Parent=Msa1215940-mRNA-1
chr8_1	CDS	77396819	77397445	77396819	ID=Msa1215940-mRNA-1:cds;Parent=Msa1215940-mRNA-1
chr8_1	CDS	77397658	77398065	77397658	ID=Msa1215940-mRNA-1:cds;Parent=Msa1215940-mRNA-1
chr8_1	three_prime_UTR	77398066	77398221	77398066	ID=Msa1215940-mRNA-1:three_prime_utr;Parent=Msa1215940-mRNA-1

Gene Sequence

>Msa1215940

ATGGAGGATGGTGTGGCTAAGGTGAGGGCAGACCAATACAATGGGAGAGTCACAGTTCATGTCATCCTTGCTTGCATTGTTGCTGCCACTGGAGGGTCTCTCTTTGGCTATGATGTTGGTATTTCAGGAGGAGTTACTTCTATGGATGACTTTCTTCTTAAGTTTTTCCCCTCAGTGTACAAACAAAAAATGCACGCACATGAAAACAACTACTGCAAGTATAACAATCAAGTCCTCGCAGCATTTACCTCTGTTTTATACATTTCTGGTTTAGTTGCATCCTTGGTGGCATCTACAATTACAAGGAAATATGGACGGAAAATAAGTATCATAGTTGGTGGTATCAGTTTTCTCATCGGATCAATTCTGAATGCCGCAGCTGCTAATCTAGGAATGCTTATCATAGGTCGAATTCTGCTTGGTGTAGGCATTGGTTTTGGAGATCAGGCGATTCCTCTTTACTTGTCAGAGATGGCGCCAACACACCTAAGAGGAGGCCTAAACATGATGTTTCAAGTTGCAACCACACTTGGCATTTTTACAGCAAATATGATCAATTTTGGAACACACAATATTAAACCATGGGGGTGGAGGCTGTCCCTTGGACTTGCTGCAATACCAGCTGTTTTGATGACTGTTGGAGGAATATTTATTCCGGAGACTCCAAATAGCTTAATAGAAAGAGGATCAAAGGAAAAAGGAAGGAAGGTCCTTGAAAAACTCAGAGGAACAAAAGATGTTGATGCTGAGTTCCAAGATATGGTTGAAGCAAGTGAGTTGGCAAACTCAATAAAGCACCCTTTCCGAAACATACTTGAAAAACGATACAGGCCAGAGTTGGTCATGGCTATATGCATGCCTGCATTCCAGATTCTTACAGGCATAAATTCAATTCTCTTTTATGCTCCTGTGCTGTTTCAAAGCATGGGATTTGGCAAAGACGCATCTCTCTACTCCTCAGCCTTGACTGGGGGAGTTCTTCTGATATCAACATTCATTTCTATTGCAATAGTAGATAGATTGGGGAGAAGACCTCTACTCATCAGTGGTGGAATACAAATGATTATATGCCAGGTCATAGTTGCTATAATCTTGGGGATCAAGTTTGGAGACAACCAAGAATTGTCAAAAGGCTATTCATTGTCGGTTGTAGTTGCAATTTGTCTATTTGTTCTAGCATTTGGATGGTCATGGGGGCCACTAGGATGGACAGTCCCAAGTGAGATATTTCCATTAGAAATCCGATCCGCCGGGCAGAGTATAACAGTTGCTGTAAACCTTCTCTTTACTTTCATAATCGCACAAACGTTCCTTTCCCTTCTATGTACATTCAAGTTTGGGATCTTCCTGTTTTTTGCTGGCTGGATAACCATCATGACCATATTTGTTGTTTTATTCCTACCTGAAACTAAGGGAATTCCCATTGAAGAGATGGCAATTATGTGGAAGAAACACTGGTTCTGGAAAAGGATACTACCATAG

Protein sequence

>Msa1215940

MEDGVAKVRADQYNGRVTVHVILACIVAATGGSLFGYDVGISGGVTSMDDFLLKFFPSVYKQKMHAHENNYCKYNNQVLAAFTSVLYISGLVASLVASTITRKYGRKISIIVGGISFLIGSILNAAAANLGMLIIGRILLGVGIGFGDQAIPLYLSEMAPTHLRGGLNMMFQVATTLGIFTANMINFGTHNIKPWGWRLSLGLAAIPAVLMTVGGIFIPETPNSLIERGSKEKGRKVLEKLRGTKDVDAEFQDMVEASELANSIKHPFRNILEKRYRPELVMAICMPAFQILTGINSILFYAPVLFQSMGFGKDASLYSSALTGGVLLISTFISIAIVDRLGRRPLLISGGIQMIICQVIVAIILGIKFGDNQELSKGYSLSVVVAICLFVLAFGWSWGPLGWTVPSEIFPLEIRSAGQSITVAVNLLFTFIIAQTFLSLLCTFKFGIFLFFAGWITIMTIFVVLFLPETKGIPIEEMAIMWKKHWFWKRILP*