AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460010 MtrunA17_Chr4g0073141 97.130 453 12 1 1 453 1 452 0.0 908
Msa1460010 MtrunA17_Chr6g0453511 96.552 145 5 0 308 452 1 145 7.31e-95 282
Msa1460010 MtrunA17_Chr5g0413841 38.095 420 153 16 9 408 9 341 7.70e-68 221
Msa1460010 MtrunA17_Chr6g0451161 40.110 364 132 13 58 407 66 357 1.64e-64 212
Msa1460010 MtrunA17_Chr4g0059281 36.160 401 140 15 16 407 6 299 4.49e-62 204
Msa1460010 MtrunA17_Chr8g0364881 40.591 372 124 17 63 407 5 306 1.61e-60 200
Msa1460010 MtrunA17_Chr1g0191601 42.177 147 77 2 47 191 33 173 3.85e-30 120
Msa1460010 MtrunA17_Chr3g0132491 41.304 138 72 3 56 191 52 182 6.45e-29 117
Msa1460010 MtrunA17_Chr5g0411081 33.636 220 112 4 60 268 56 252 2.64e-26 109
Msa1460010 MtrunA17_Chr7g0273051 39.073 151 79 4 43 191 27 166 2.98e-26 109
Msa1460010 MtrunA17_Chr8g0336881 44.118 136 70 3 59 191 19 151 1.03e-24 103
Msa1460010 MtrunA17_Chr5g0426871 39.850 133 73 3 62 190 53 182 1.25e-23 102
Msa1460010 MtrunA17_Chr6g0486651 34.911 169 91 6 61 222 39 195 1.56e-23 101
Msa1460010 MtrunA17_Chr6g0470751 35.152 165 96 3 58 220 46 201 2.34e-23 100
Msa1460010 MtrunA17_Chr3g0133001 56.944 72 30 1 116 187 128 198 4.99e-23 100
Msa1460010 MtrunA17_Chr5g0426781 33.149 181 88 6 25 191 39 200 7.90e-23 99.4
Msa1460010 MtrunA17_Chr4g0050041 36.184 152 77 4 58 193 53 200 8.51e-23 99.4
Msa1460010 MtrunA17_Chr3g0126931 32.632 190 110 5 18 203 3 178 1.47e-22 98.6
Msa1460010 MtrunA17_Chr8g0345361 33.125 160 95 5 37 187 3 159 1.97e-22 95.9
Msa1460010 MtrunA17_Chr5g0426881 35.766 137 81 2 57 191 58 189 4.97e-22 97.4
Msa1460010 MtrunA17_Chr3g0123631 39.370 127 68 2 66 190 1 120 5.05e-22 93.2
Msa1460010 MtrunA17_Chr5g0427431 53.247 77 35 1 111 187 127 202 5.36e-22 97.8
Msa1460010 MtrunA17_Chr8g0381731 51.807 83 39 1 111 193 141 222 5.37e-22 95.9
Msa1460010 MtrunA17_Chr3g0123641 39.231 130 70 2 66 193 1 123 8.00e-22 94.0
Msa1460010 MtrunA17_Chr8g0366561 31.720 186 120 5 60 239 56 240 8.08e-22 96.3
Msa1460010 MtrunA17_Chr3g0128771 34.810 158 81 6 51 205 39 177 6.38e-21 89.7
Msa1460010 MtrunA17_Chr7g0244851 34.211 152 80 4 44 191 18 153 1.00e-20 89.4
Msa1460010 MtrunA17_Chr1g0203541 48.780 82 38 1 116 193 103 184 1.65e-20 89.4
Msa1460010 MtrunA17_Chr4g0030831 35.172 145 78 3 65 193 16 160 2.55e-20 87.8
Msa1460010 MtrunA17_Chr2g0279431 33.553 152 84 3 58 193 59 209 5.63e-20 91.3
Msa1460010 MtrunA17_Chr7g0276591 36.054 147 77 5 53 190 8 146 2.31e-19 88.2
Msa1460010 MtrunA17_Chr2g0325141 36.029 136 78 4 63 190 2 136 2.66e-19 84.3
Msa1460010 MtrunA17_Chr2g0325161 38.053 113 64 2 84 190 56 168 2.70e-19 87.0
Msa1460010 MtrunA17_Chr4g0067591 43.396 106 49 2 118 215 80 182 2.93e-19 87.4
Msa1460010 MtrunA17_Chr2g0295571 35.119 168 94 4 26 188 5 162 3.49e-19 87.4
Msa1460010 MtrunA17_Chr3g0118071 35.507 138 84 4 55 190 15 149 1.72e-18 84.0
Msa1460010 MtrunA17_Chr2g0307411 47.297 74 35 1 118 191 77 146 1.96e-18 83.2
Msa1460010 MtrunA17_Chr4g0013561 46.053 76 39 1 116 191 83 156 2.26e-18 84.0
Msa1460010 MtrunA17_Chr3g0105441 45.000 80 41 1 115 191 99 178 4.97e-18 83.6
Msa1460010 MtrunA17_Chr3g0118061 41.489 94 53 2 98 190 57 149 5.99e-18 82.4
Msa1460010 MtrunA17_Chr7g0274741 37.273 110 59 2 118 225 70 171 1.26e-17 80.5
Msa1460010 MtrunA17_Chr5g0433861 47.368 76 37 1 118 190 76 151 1.71e-17 82.8
Msa1460010 MtrunA17_Chr2g0301871 55.224 67 28 1 127 191 63 129 2.14e-17 82.4
Msa1460010 MtrunA17_Chr8g0383881 31.293 147 95 1 45 191 36 176 2.54e-17 80.9
Msa1460010 MtrunA17_Chr8g0383861 30.573 157 104 2 35 191 35 186 3.13e-17 80.5
Msa1460010 MtrunA17_Chr1g0184171 27.389 157 107 2 64 215 44 198 4.57e-17 82.0
Msa1460010 MtrunA17_Chr8g0383901 31.977 172 98 4 20 191 25 177 1.83e-16 78.2
Msa1460010 MtrunA17_Chr7g0274711 39.091 110 59 3 118 225 67 170 1.89e-16 77.0
Msa1460010 MtrunA17_Chr5g0407431 32.374 139 80 5 63 200 34 159 2.09e-16 78.2
Msa1460010 MtrunA17_Chr1g0184631 39.091 110 59 3 118 225 68 171 2.76e-16 76.6
Msa1460010 MtrunA17_Chr1g0186661 43.590 78 39 1 118 190 99 176 3.24e-16 79.7
Msa1460010 MtrunA17_Chr8g0347461 44.330 97 46 2 121 215 114 204 3.55e-16 79.0
Msa1460010 MtrunA17_Chr8g0383921 29.730 148 98 1 44 191 43 184 4.38e-16 77.0
Msa1460010 MtrunA17_Chr8g0383871 30.921 152 99 2 40 191 40 185 4.55e-16 77.4
Msa1460010 MtrunA17_Chr1g0167811 26.627 169 95 6 28 187 17 165 7.87e-16 78.2
Msa1460010 MtrunA17_Chr4g0027761 43.243 74 38 1 118 191 100 169 1.67e-15 74.7
Msa1460010 MtrunA17_Chr3g0143301 54.098 61 26 1 142 202 68 126 1.95e-15 72.8
Msa1460010 MtrunA17_Chr8g0370171 44.444 72 39 1 118 188 70 141 2.48e-15 74.7
Msa1460010 MtrunA17_Chr5g0430781 33.333 117 69 4 81 193 47 158 3.69e-15 74.3
Msa1460010 MtrunA17_Chr3g0129671 41.250 80 47 0 116 195 107 186 3.80e-15 74.7
Msa1460010 MtrunA17_Chr2g0327791 37.226 137 71 7 101 230 91 219 4.13e-15 74.3
Msa1460010 MtrunA17_Chr7g0246761 33.333 90 60 0 109 198 54 143 4.78e-15 73.6
Msa1460010 MtrunA17_Chr5g0409201 31.818 132 78 2 62 189 14 137 5.47e-15 72.4
Msa1460010 MtrunA17_Chr8g0366521 44.737 76 39 1 118 190 76 151 5.68e-15 75.5
Msa1460010 MtrunA17_Chr8g0383931 51.562 64 31 0 128 191 124 187 6.88e-15 73.9
Msa1460010 MtrunA17_Chr5g0444161 46.479 71 37 1 118 187 157 227 7.68e-15 73.9
Msa1460010 MtrunA17_Chr8g0383941 28.846 156 100 2 36 191 36 180 8.28e-15 73.6
Msa1460010 MtrunA17_Chr6g0451051 45.055 91 47 2 141 230 62 150 1.24e-14 71.2
Msa1460010 MtrunA17_Chr3g0118091 39.437 71 43 0 119 189 41 111 1.29e-14 70.5
Msa1460010 MtrunA17_Chr7g0274721 46.479 71 36 1 118 188 68 136 1.49e-14 71.6
Msa1460010 MtrunA17_Chr1g0198201 42.466 73 42 0 118 190 61 133 1.90e-14 72.4
Msa1460010 MtrunA17_Chr5g0437361 40.541 74 43 1 118 190 75 148 2.29e-14 70.9
Msa1460010 MtrunA17_Chr6g0451031 44.615 65 34 1 124 188 50 112 3.15e-14 69.3
Msa1460010 MtrunA17_Chr3g0144241 41.176 85 47 2 116 200 77 158 3.39e-14 71.2
Msa1460010 MtrunA17_Chr1g0177041 39.241 79 40 2 116 189 72 147 5.44e-14 69.7
Msa1460010 MtrunA17_Chr1g0157091 44.156 77 35 3 116 190 46 116 5.73e-14 68.9
Msa1460010 MtrunA17_Chr3g0113811 27.273 154 98 4 44 190 5 151 5.80e-14 69.7
Msa1460010 MtrunA17_Chr5g0397351 54.167 48 21 1 145 191 81 128 7.13e-14 68.6
Msa1460010 MtrunA17_Chr5g0444141 50.000 52 26 0 145 196 220 271 7.19e-14 71.6
Msa1460010 MtrunA17_Chr7g0261091 42.105 76 41 1 118 190 70 145 2.22e-13 70.9
Msa1460010 MtrunA17_Chr2g0297011 44.444 72 39 1 116 187 74 144 2.36e-13 67.8
Msa1460010 MtrunA17_Chr7g0274731 45.070 71 37 1 118 188 89 157 2.66e-13 68.6
Msa1460010 MtrunA17_Chr8g0369571 60.000 45 18 0 145 189 90 134 2.67e-13 68.2
Msa1460010 MtrunA17_Chr5g0409211 57.778 45 19 0 145 189 94 138 3.01e-13 67.8
Msa1460010 MtrunA17_Chr7g0269491 45.205 73 35 2 119 188 67 137 4.79e-13 67.8
Msa1460010 MtrunA17_Chr4g0052671 62.791 43 16 0 145 187 106 148 5.29e-13 66.6
Msa1460010 MtrunA17_Chr8g0350741 30.000 100 69 1 115 214 59 157 1.42e-12 65.9
Msa1460010 MtrunA17_Chr8g0348151 38.571 70 40 1 118 187 90 156 1.72e-12 66.2
Msa1460010 MtrunA17_Chr3g0120011 44.928 69 36 1 123 191 99 165 1.98e-12 66.6
Msa1460010 MtrunA17_Chr7g0248831 34.667 75 42 2 117 187 79 150 2.49e-12 65.5
Msa1460010 MtrunA17_Chr2g0300331 44.000 75 36 2 143 214 167 238 3.96e-12 65.9
Msa1460010 MtrunA17_Chr5g0406031 54.348 46 21 0 145 190 189 234 4.05e-12 65.9
Msa1460010 MtrunA17_Chr8g0388231 42.667 75 34 2 118 187 309 379 5.16e-12 67.4
Msa1460010 MtrunA17_Chr8g0387291 29.078 141 68 4 65 193 15 135 5.56e-12 63.9
Msa1460010 MtrunA17_Chr6g0451041 55.102 49 21 1 141 188 13 61 5.70e-12 62.0
Msa1460010 MtrunA17_Chr3g0117821 54.167 48 22 0 141 188 81 128 5.98e-12 63.5
Msa1460010 MtrunA17_Chr3g0118101 38.889 72 44 0 118 189 87 158 6.68e-12 63.9
Msa1460010 MtrunA17_Chr4g0065171 38.356 73 41 3 121 190 458 529 7.30e-12 67.4
Msa1460010 MtrunA17_Chr8g0388201 53.488 43 20 0 145 187 347 389 9.31e-12 66.6
Msa1460010 MtrunA17_Chr7g0248841 35.065 77 47 2 118 191 74 150 1.33e-11 62.8
Msa1460010 MtrunA17_Chr1g0197011 32.278 158 80 6 44 191 13 153 1.45e-11 62.4
Msa1460010 MtrunA17_Chr8g0343571 43.548 62 34 1 130 190 69 130 2.43e-11 62.4
Msa1460010 MtrunA17_Chr1g0212451 49.091 55 27 1 145 198 80 134 2.74e-11 61.2
Msa1460010 MtrunA17_Chr3g0124531 54.902 51 21 2 144 193 68 117 4.27e-11 61.2
Msa1460010 MtrunA17_Chr8g0345401 42.593 54 30 1 145 197 49 102 5.06e-11 60.8
Msa1460010 MtrunA17_Chr4g0069761 49.091 55 21 1 145 192 21 75 5.15e-11 59.3
Msa1460010 MtrunA17_Chr4g0060981 32.632 95 53 2 96 190 136 219 6.03e-11 62.0
Msa1460010 MtrunA17_Chr8g0371291 51.064 47 23 0 141 187 176 222 6.15e-11 62.4
Msa1460010 MtrunA17_Chr5g0425981 47.917 48 23 2 144 190 56 102 6.33e-11 60.1
Msa1460010 MtrunA17_Chr3g0081611 34.066 91 51 2 118 203 80 166 8.25e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460010 AT2G18650.1 49.749 398 130 14 48 425 28 375 7.22e-98 300
Msa1460010 AT4G30400.1 52.342 363 128 14 90 429 78 418 3.33e-94 292
Msa1460010 AT5G40250.1 39.948 383 125 13 58 412 40 345 3.66e-65 214
Msa1460010 AT5G57750.1 58.282 163 63 2 59 216 32 194 9.27e-56 184
Msa1460010 AT1G23980.1 60.417 144 46 3 58 191 48 190 1.94e-52 181
Msa1460010 AT3G48030.2 51.128 133 60 2 63 190 42 174 3.60e-36 134
Msa1460010 AT3G48030.1 51.128 133 60 2 63 190 120 252 7.55e-36 135
Msa1460010 AT1G72200.1 39.416 137 76 3 58 191 58 190 1.74e-25 108
Msa1460010 AT4G40070.1 33.333 168 102 3 27 190 8 169 5.22e-25 105
Msa1460010 AT2G35000.1 37.405 131 80 1 63 191 51 181 2.19e-24 104
Msa1460010 AT3G05200.1 37.162 148 80 5 46 190 36 173 7.02e-24 103
Msa1460010 AT2G20030.1 35.484 186 109 6 61 238 39 221 1.14e-23 102
Msa1460010 AT1G22500.1 39.259 135 73 3 60 191 36 164 3.38e-23 101
Msa1460010 AT2G34990.1 35.714 140 78 3 57 190 8 141 1.26e-22 98.2
Msa1460010 AT2G34990.2 35.714 140 78 3 57 190 30 163 1.47e-22 98.6
Msa1460010 AT4G09110.1 34.437 151 77 4 43 190 37 168 1.56e-22 97.8
Msa1460010 AT5G05810.1 58.333 72 29 1 116 187 118 188 2.06e-22 99.4
Msa1460010 AT1G72220.1 38.571 140 71 5 64 190 85 222 3.52e-22 98.6
Msa1460010 AT4G09130.1 53.333 75 33 1 118 190 91 165 5.47e-22 97.4
Msa1460010 AT4G17905.1 33.728 169 94 4 34 191 40 201 9.82e-22 95.9
Msa1460010 AT5G17600.1 39.844 128 73 3 64 188 59 185 1.08e-21 96.7
Msa1460010 AT4G09120.1 52.000 75 34 1 118 190 94 168 2.57e-21 95.1
Msa1460010 AT4G17905.2 33.728 169 94 4 34 191 66 227 2.82e-21 95.1
Msa1460010 AT1G35330.1 54.667 75 32 1 118 190 100 174 3.30e-21 94.7
Msa1460010 AT3G03550.1 34.932 146 76 3 61 188 58 202 4.38e-21 94.7
Msa1460010 AT5G10380.1 37.956 137 67 4 108 243 99 218 8.28e-21 92.8
Msa1460010 AT3G60220.1 44.545 110 49 2 122 219 92 201 1.41e-20 92.8
Msa1460010 AT2G47560.1 47.674 86 44 1 116 200 78 163 2.42e-20 90.1
Msa1460010 AT2G42360.1 32.000 150 95 2 42 190 10 153 3.43e-20 89.7
Msa1460010 AT4G33565.1 50.617 81 39 1 111 191 184 263 4.40e-20 92.0
Msa1460010 AT3G18930.2 48.485 99 42 2 118 207 120 218 4.97e-20 92.4
Msa1460010 AT3G18930.3 48.485 99 42 2 118 207 120 218 4.97e-20 92.4
Msa1460010 AT3G18930.1 48.485 99 42 2 118 207 120 218 4.97e-20 92.4
Msa1460010 AT4G10160.1 36.567 134 78 3 60 191 15 143 8.01e-20 88.6
Msa1460010 AT4G28890.1 53.521 71 32 1 117 187 96 165 2.05e-19 90.5
Msa1460010 AT5G27420.1 49.333 75 36 1 118 190 95 169 3.91e-19 89.0
Msa1460010 AT5G46650.1 29.902 204 122 8 45 236 8 202 7.88e-19 87.0
Msa1460010 AT4G17920.1 30.102 196 116 7 59 238 19 209 1.28e-18 86.3
Msa1460010 AT3G16720.1 33.333 153 88 3 46 188 14 162 1.57e-18 86.3
Msa1460010 AT3G10910.1 35.338 133 79 4 62 191 32 160 1.83e-18 83.6
Msa1460010 AT4G10150.1 46.053 76 39 1 116 191 84 157 5.71e-18 83.6
Msa1460010 AT4G09100.1 42.105 76 42 1 118 191 56 131 1.31e-17 79.3
Msa1460010 AT1G04360.1 30.337 178 107 6 64 232 46 215 1.83e-17 84.3
Msa1460010 AT3G62690.1 33.117 154 81 5 44 188 16 156 2.55e-17 82.0
Msa1460010 AT1G53820.1 40.952 105 57 3 114 215 91 193 2.88e-17 82.8
Msa1460010 AT5G01880.1 45.333 75 40 1 117 191 78 151 3.52e-17 79.0
Msa1460010 AT4G15975.1 33.113 151 97 3 118 268 51 197 6.36e-17 80.5
Msa1460010 AT5G05280.1 29.560 159 100 4 34 191 12 159 9.90e-17 78.2
Msa1460010 AT5G58580.1 46.053 76 41 0 116 191 109 184 4.00e-16 79.3
Msa1460010 AT5G43420.1 38.298 94 45 1 113 193 93 186 4.85e-16 80.1
Msa1460010 AT2G42350.1 46.575 73 33 2 118 188 75 143 4.88e-16 77.4
Msa1460010 AT5G47610.1 29.114 158 90 3 34 191 18 153 5.99e-16 75.9
Msa1460010 AT1G72310.1 33.540 161 70 5 114 253 98 242 6.19e-16 79.0
Msa1460010 AT1G49230.1 30.822 146 85 2 47 192 49 178 6.56e-16 77.0
Msa1460010 AT2G27940.1 43.243 74 40 1 118 191 115 186 8.05e-16 77.0
Msa1460010 AT1G33480.1 42.105 76 42 1 116 191 73 146 1.78e-15 76.6
Msa1460010 AT1G76410.1 33.588 131 76 3 63 191 29 150 6.31e-15 73.6
Msa1460010 AT5G07040.1 30.952 126 80 3 63 187 17 136 1.62e-14 71.6
Msa1460010 AT1G20823.1 30.065 153 102 4 41 191 8 157 1.80e-14 72.4
Msa1460010 AT3G18773.1 42.105 76 44 0 116 191 101 176 4.45e-14 71.6
Msa1460010 AT2G35420.1 44.000 75 41 1 116 190 75 148 4.72e-14 72.4
Msa1460010 AT4G38140.1 48.529 68 30 2 145 207 62 129 1.01e-13 68.9
Msa1460010 AT1G49220.1 29.630 135 86 2 59 191 54 181 1.08e-13 71.2
Msa1460010 AT1G49210.1 31.847 157 83 5 52 191 32 181 1.81e-13 70.1
Msa1460010 AT3G61550.1 37.037 81 41 1 117 187 98 178 2.32e-13 69.3
Msa1460010 AT3G11110.1 29.655 145 88 3 46 190 22 152 2.93e-13 67.8
Msa1460010 AT2G17450.1 47.368 57 29 1 144 200 101 156 5.80e-13 67.8
Msa1460010 AT3G60966.1 59.184 49 19 1 142 190 60 107 6.07e-13 66.2
Msa1460010 AT3G14320.1 56.250 48 21 0 143 190 86 133 6.32e-13 68.2
Msa1460010 AT2G46493.1 31.496 127 78 4 63 187 61 180 6.32e-13 67.4
Msa1460010 AT2G35910.1 41.892 74 42 1 118 191 121 193 6.58e-13 68.2
Msa1460010 AT4G35480.1 49.123 57 28 1 144 200 112 167 7.75e-13 67.8
Msa1460010 AT1G49200.1 28.148 135 88 2 59 191 55 182 8.28e-13 68.2
Msa1460010 AT4G17245.1 29.747 158 91 4 35 191 11 149 9.38e-13 66.6
Msa1460010 AT2G44578.1 50.000 46 23 0 145 190 70 115 4.87e-12 63.9
Msa1460010 AT2G18670.1 41.096 73 43 0 118 190 83 155 5.34e-12 64.7
Msa1460010 AT5G53110.1 39.759 83 45 2 110 187 290 372 6.17e-12 67.4
Msa1460010 AT3G20395.1 37.805 82 48 1 112 193 141 219 6.68e-12 65.5
Msa1460010 AT1G32361.1 39.474 76 41 2 116 190 128 199 7.96e-12 66.6
Msa1460010 AT2G46494.1 30.827 133 75 6 62 187 236 358 8.29e-12 67.0
Msa1460010 AT2G46160.1 31.183 93 57 1 118 203 104 196 8.40e-12 65.1
Msa1460010 AT2G46160.2 31.183 93 57 1 118 203 104 196 8.40e-12 65.1
Msa1460010 AT4G24015.1 45.455 66 34 1 125 190 87 150 1.03e-11 63.9
Msa1460010 AT3G19140.1 41.026 78 36 2 117 190 53 124 1.59e-11 62.4
Msa1460010 AT2G25410.1 53.333 45 21 0 145 189 327 371 1.84e-11 65.9
Msa1460010 AT2G17730.1 48.000 50 26 0 141 190 192 241 2.18e-11 64.3
Msa1460010 AT5G45290.1 43.056 72 36 4 124 193 471 539 2.39e-11 66.2
Msa1460010 AT2G37580.1 51.064 47 23 0 144 190 141 187 3.50e-11 63.5
Msa1460010 AT2G28920.1 47.727 44 23 0 145 188 93 136 4.19e-11 61.2
Msa1460010 AT4G35840.1 48.000 50 26 0 141 190 187 236 4.32e-11 63.2
Msa1460010 AT5G66070.5 52.174 46 22 0 145 190 176 221 4.44e-11 63.2
Msa1460010 AT5G66070.1 52.174 46 22 0 145 190 176 221 4.44e-11 63.2
Msa1460010 AT1G28040.1 38.961 77 36 3 117 187 224 295 5.69e-11 63.9
Msa1460010 AT5G66070.2 52.174 46 22 0 145 190 200 245 6.92e-11 62.8
Msa1460010 AT5G42200.1 47.273 55 29 0 144 198 103 157 7.05e-11 61.2
Msa1460010 AT5G06490.1 46.809 47 25 0 145 191 129 175 7.92e-11 61.6

Find 90 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTGCAGCCTCTCTTTC+TGG 0.103627 tig0040574:-17317 None:intergenic
GGGATCATTTGCTTATATTA+TGG 0.181838 tig0040574:+17567 Msa1460010:CDS
TGCAAATTTGAAATCTCTTC+TGG 0.188680 tig0040574:-17735 None:intergenic
TTTCTTTACAAAACTATTAT+AGG 0.195927 tig0040574:+17031 Msa1460010:CDS
AATACTTGGACTAACCTTTA+AGG 0.197221 tig0040574:-16829 None:intergenic
CTAGAAGGGCTGTTTCATTT+AGG 0.245294 tig0040574:+17890 Msa1460010:CDS
TGAAAAGCATGGCTACATTT+TGG 0.247041 tig0040574:-17146 None:intergenic
ATCTCTTAGTTAGATTTCTA+TGG 0.247046 tig0040574:+16885 Msa1460010:CDS
TTGGTTCTTGTTCTAGAATC+TGG 0.285012 tig0040574:+17250 Msa1460010:CDS
TCTCCTCCAACTTCAACTTT+TGG 0.285506 tig0040574:-17455 None:intergenic
CGGTGAATTCGGAGGTGATT+TGG 0.309461 tig0040574:+17390 Msa1460010:CDS
AGAGCTGAGGATGTTGTTAA+AGG 0.342857 tig0040574:+17754 Msa1460010:CDS
CTTCCAACATTGCTTTGTAA+TGG 0.356096 tig0040574:-17935 None:intergenic
TAATACGGTGGTTGTTCTAA+TGG 0.359144 tig0040574:-16717 None:intergenic
GGATGAAACTTCATCATTGC+AGG 0.378097 tig0040574:+17588 Msa1460010:CDS
AGGACAGCAAATTCTCATCT+TGG 0.380152 tig0040574:+17355 Msa1460010:CDS
ATATCAAAGATTTGGCTTAG+AGG 0.383746 tig0040574:+17829 Msa1460010:CDS
GAGTAGAGACCCTGATGAAT+TGG 0.388468 tig0040574:+16916 Msa1460010:CDS
AAACAATTGTGGTTCTCCTT+TGG 0.389738 tig0040574:+17231 Msa1460010:CDS
ACTAGTGAGGGTGCTGGTAT+TGG 0.396180 tig0040574:+17781 Msa1460010:CDS
ATGTAGCTGATTCATCTAGA+AGG 0.400929 tig0040574:+17875 Msa1460010:CDS
TGTTGCGGAGACGGTGAATT+CGG 0.408642 tig0040574:+17379 Msa1460010:CDS
AATTGTTTGTGTTGAAATCA+TGG 0.410664 tig0040574:-17235 None:intergenic
GTAACATCATCCAATTCATC+AGG 0.411733 tig0040574:-16945 None:intergenic
CATCTTGGTTGTTGCGGAGA+CGG 0.419097 tig0040574:+17370 Msa1460010:CDS
AAAGTTGTTACTGTTAAGCT+TGG 0.427283 tig0040574:+17469 Msa1460010:CDS
TTGGTAGGACTAGTTCAGTT+AGG 0.433669 tig0040574:+17335 Msa1460010:CDS
AAACAAACAGCACAGTCAAA+AGG 0.440166 tig0040574:-17086 None:intergenic
GATGATGTTACTGCTCTTCA+AGG 0.452244 tig0040574:+16938 Msa1460010:CDS
AATGTTGATGGTGGAGGGGA+AGG 0.458055 tig0040574:+17502 Msa1460010:CDS
TATCAAAGATTTGGCTTAGA+GGG 0.462286 tig0040574:+17830 Msa1460010:CDS
ATTTCTACAGGTAGTGTTGT+TGG 0.464261 tig0040574:+17316 Msa1460010:CDS
TGCCTTTGATTCCAGGTCAT+AGG 0.470953 tig0040574:+17665 Msa1460010:CDS
ATAGGTGGAAATGGTGGGTG+TGG 0.475114 tig0040574:-16747 None:intergenic
AATCTGGTAGTGATACTTCA+AGG 0.475232 tig0040574:+17266 Msa1460010:CDS
TTGAGCATGAAGATAAGCTT+AGG 0.477020 tig0040574:+17098 Msa1460010:CDS
AGAGAGGCTGCAATTTCTAC+AGG 0.484648 tig0040574:+17304 Msa1460010:CDS
GGAAAGTATAGGAATGTTGA+TGG 0.485485 tig0040574:+17490 Msa1460010:CDS
ATATGGAGTGTATTGATACA+TGG 0.487467 tig0040574:+17149 Msa1460010:CDS
GTAATGATTATAAGAATACT+TGG 0.488040 tig0040574:-16843 None:intergenic
GATGATTTGAAGGGTAAGAA+TGG 0.489628 tig0040574:+17946 Msa1460010:CDS
CTTAGAGTAGAAACTGTGAT+AGG 0.491479 tig0040574:-16765 None:intergenic
CCTGATCCAAAAGTTGAAGT+TGG 0.497640 tig0040574:+17430 Msa1460010:CDS
ATCCTATGACCTGGAATCAA+AGG 0.501462 tig0040574:-17686 None:intergenic
AACAAACAGCACAGTCAAAA+GGG 0.510919 tig0040574:-17085 None:intergenic
TATAGGAATGTTGATGGTGG+AGG 0.513287 tig0040574:+17496 Msa1460010:CDS
AAAGTTGAAGTTGGAGGAGA+TGG 0.513670 tig0040574:+17439 Msa1460010:CDS
GAAACTGTGATAGGTGGAAA+TGG 0.514717 tig0040574:-16756 None:intergenic
TTTCCATTACAAAGCAATGT+TGG 0.516937 tig0040574:+17913 Msa1460010:CDS
CTGTTAAGCTTGGAAAGTAT+AGG 0.520231 tig0040574:+17479 Msa1460010:CDS
ATAGGAATGTTGATGGTGGA+GGG 0.526338 tig0040574:+17497 Msa1460010:CDS
CTACAGGTAGTGTTGTTGGT+AGG 0.528740 tig0040574:+17320 Msa1460010:CDS
GAAGTGTATCAATGAATGAT+TGG 0.536495 tig0040574:-17022 None:intergenic
AATTCTCATCTTGGTTGTTG+CGG 0.540191 tig0040574:+17364 Msa1460010:CDS
TTACAAAGCAATGTTGGAAG+TGG 0.540697 tig0040574:+17919 Msa1460010:CDS
AAGGTGTTGTCACCTTGAAA+TGG 0.541591 tig0040574:-16681 None:intergenic
AAGTGGTAATGATGATTTGA+AGG 0.545819 tig0040574:+17936 Msa1460010:CDS
GGGTGTGGTTGAAAATAATA+CGG 0.556817 tig0040574:-16732 None:intergenic
GATTTCAACACAAACAATTG+TGG 0.567714 tig0040574:+17220 Msa1460010:CDS
ATCTGGTAGTGATACTTCAA+GGG 0.572557 tig0040574:+17267 Msa1460010:CDS
ACTGTGATAGGTGGAAATGG+TGG 0.574890 tig0040574:-16753 None:intergenic
TGTTAAAGGTAGTACTAGTG+AGG 0.576153 tig0040574:+17768 Msa1460010:CDS
GGTAGTACTAGTGAGGGTGC+TGG 0.577473 tig0040574:+17775 Msa1460010:CDS
TGGTATTGGAAGGAGTAGAA+AGG 0.578792 tig0040574:+17795 Msa1460010:CDS
GACATTGCAATCCTATGACC+TGG 0.582245 tig0040574:-17695 None:intergenic
TGAAGTTGGAGGAGATGGTG+TGG 0.582393 tig0040574:+17444 Msa1460010:CDS
ATGATGTTACTGCTCTTCAA+GGG 0.601634 tig0040574:+16939 Msa1460010:CDS
GGAAATTGTTCCAGAAAGAG+AGG 0.602109 tig0040574:+17288 Msa1460010:CDS
GTGAGGGTGCTGGTATTGGA+AGG 0.605742 tig0040574:+17785 Msa1460010:CDS
AGAATGGCATGTTTCATACA+AGG 0.605826 tig0040574:+17962 Msa1460010:CDS
TGTAGCTGATTCATCTAGAA+GGG 0.607017 tig0040574:+17876 Msa1460010:CDS
GGTGGTTGTTCTAATGGTGA+TGG 0.608551 tig0040574:-16711 None:intergenic
TACACTCCATATGAAAAGCA+TGG 0.609642 tig0040574:-17157 None:intergenic
AAGTATAGGAATGTTGATGG+TGG 0.610465 tig0040574:+17493 Msa1460010:CDS
CTGTGATAGGTGGAAATGGT+GGG 0.612490 tig0040574:-16752 None:intergenic
GATCCAAAAGTTGAAGTTGG+AGG 0.613643 tig0040574:+17433 Msa1460010:CDS
TAGGAATGTTGATGGTGGAG+GGG 0.620042 tig0040574:+17498 Msa1460010:CDS
GATTCTAGAACAAGAACCAA+AGG 0.623011 tig0040574:-17266 None:intergenic
AGAGTAGAAACTGTGATAGG+TGG 0.624253 tig0040574:-16762 None:intergenic
TGCGGAGACGGTGAATTCGG+AGG 0.635627 tig0040574:+17382 Msa1460010:CDS
TAATGGTGATGGAGTCATGA+AGG 0.635636 tig0040574:-16700 None:intergenic
GCAACAATGTGGATAACAGA+AGG 0.641238 tig0040574:+17533 Msa1460010:CDS
CTTTGATTCAGCTAGAGCTG+AGG 0.641873 tig0040574:+17741 Msa1460010:CDS
GTTAAAGGTAGTACTAGTGA+GGG 0.651923 tig0040574:+17769 Msa1460010:CDS
AGCAAATTAGCTCTACAAAG+AGG 0.655219 tig0040574:-17212 None:intergenic
AGGAAGTAGCAGCAACAATG+TGG 0.665618 tig0040574:+17522 Msa1460010:CDS
TCATCAGGGTCTCTACTCTG+AGG 0.680638 tig0040574:-16930 None:intergenic
TAACATCATCCAATTCATCA+GGG 0.684148 tig0040574:-16944 None:intergenic
AGTGGTAATGATGATTTGAA+GGG 0.684415 tig0040574:+17937 Msa1460010:CDS
TGTGGTTGAAAATAATACGG+TGG 0.746193 tig0040574:-16729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTTACAAAACTATTAT+AGG + tig0040574:17031-17050 Msa1460010:CDS 15.0%
!! TTTCTTTACAAAACTATTAT+AGG + tig0040574:17031-17050 Msa1460010:CDS 15.0%
!!! TTTTAACAATAACACCTTAA+AGG + tig0040574:16796-16815 Msa1460010:CDS 20.0%
!! GTAATGATTATAAGAATACT+TGG - tig0040574:16827-16846 None:intergenic 20.0%
!!! GTTTTTCTATATCAAAGATT+TGG + tig0040574:17821-17840 Msa1460010:CDS 20.0%
!!! TTTTAACAATAACACCTTAA+AGG + tig0040574:16796-16815 Msa1460010:CDS 20.0%
!! GTAATGATTATAAGAATACT+TGG - tig0040574:16827-16846 None:intergenic 20.0%
!!! GTTTTTCTATATCAAAGATT+TGG + tig0040574:17821-17840 Msa1460010:CDS 20.0%
! ATCTCTTAGTTAGATTTCTA+TGG + tig0040574:16885-16904 Msa1460010:CDS 25.0%
!!! ATAGTTTTGTAAAGAAACAC+TGG - tig0040574:17028-17047 None:intergenic 25.0%
! AATTGTTTGTGTTGAAATCA+TGG - tig0040574:17219-17238 None:intergenic 25.0%
!!! TGTTTTATTGGAGTTCTAAT+TGG - tig0040574:17616-17635 None:intergenic 25.0%
!!! TTACTCAATTGCTGTTTTAT+TGG - tig0040574:17628-17647 None:intergenic 25.0%
! GGGAAAAAAGATAAGAAAAA+TGG + tig0040574:17850-17869 Msa1460010:CDS 25.0%
! ATCTCTTAGTTAGATTTCTA+TGG + tig0040574:16885-16904 Msa1460010:CDS 25.0%
!!! ATAGTTTTGTAAAGAAACAC+TGG - tig0040574:17028-17047 None:intergenic 25.0%
! AATTGTTTGTGTTGAAATCA+TGG - tig0040574:17219-17238 None:intergenic 25.0%
!!! TGTTTTATTGGAGTTCTAAT+TGG - tig0040574:17616-17635 None:intergenic 25.0%
!!! TTACTCAATTGCTGTTTTAT+TGG - tig0040574:17628-17647 None:intergenic 25.0%
! GGGAAAAAAGATAAGAAAAA+TGG + tig0040574:17850-17869 Msa1460010:CDS 25.0%
AATACTTGGACTAACCTTTA+AGG - tig0040574:16813-16832 None:intergenic 30.0%
TAACATCATCCAATTCATCA+GGG - tig0040574:16928-16947 None:intergenic 30.0%
GAAGTGTATCAATGAATGAT+TGG - tig0040574:17006-17025 None:intergenic 30.0%
! ATATGGAGTGTATTGATACA+TGG + tig0040574:17149-17168 Msa1460010:CDS 30.0%
GATTTCAACACAAACAATTG+TGG + tig0040574:17220-17239 Msa1460010:CDS 30.0%
AAAGTTGTTACTGTTAAGCT+TGG + tig0040574:17469-17488 Msa1460010:CDS 30.0%
!!! TAACAGAAGGTGTTTTTCAA+TGG + tig0040574:17546-17565 Msa1460010:CDS 30.0%
!!! AACAGAAGGTGTTTTTCAAT+GGG + tig0040574:17547-17566 Msa1460010:CDS 30.0%
GGGATCATTTGCTTATATTA+TGG + tig0040574:17567-17586 Msa1460010:CDS 30.0%
! TGCAAATTTGAAATCTCTTC+TGG - tig0040574:17719-17738 None:intergenic 30.0%
! ATATCAAAGATTTGGCTTAG+AGG + tig0040574:17829-17848 Msa1460010:CDS 30.0%
! TATCAAAGATTTGGCTTAGA+GGG + tig0040574:17830-17849 Msa1460010:CDS 30.0%
TTTCCATTACAAAGCAATGT+TGG + tig0040574:17913-17932 Msa1460010:CDS 30.0%
! AAGTGGTAATGATGATTTGA+AGG + tig0040574:17936-17955 Msa1460010:CDS 30.0%
! AGTGGTAATGATGATTTGAA+GGG + tig0040574:17937-17956 Msa1460010:CDS 30.0%
AATACTTGGACTAACCTTTA+AGG - tig0040574:16813-16832 None:intergenic 30.0%
TAACATCATCCAATTCATCA+GGG - tig0040574:16928-16947 None:intergenic 30.0%
GAAGTGTATCAATGAATGAT+TGG - tig0040574:17006-17025 None:intergenic 30.0%
! ATATGGAGTGTATTGATACA+TGG + tig0040574:17149-17168 Msa1460010:CDS 30.0%
GATTTCAACACAAACAATTG+TGG + tig0040574:17220-17239 Msa1460010:CDS 30.0%
AAAGTTGTTACTGTTAAGCT+TGG + tig0040574:17469-17488 Msa1460010:CDS 30.0%
!!! TAACAGAAGGTGTTTTTCAA+TGG + tig0040574:17546-17565 Msa1460010:CDS 30.0%
!!! AACAGAAGGTGTTTTTCAAT+GGG + tig0040574:17547-17566 Msa1460010:CDS 30.0%
GGGATCATTTGCTTATATTA+TGG + tig0040574:17567-17586 Msa1460010:CDS 30.0%
! TGCAAATTTGAAATCTCTTC+TGG - tig0040574:17719-17738 None:intergenic 30.0%
! ATATCAAAGATTTGGCTTAG+AGG + tig0040574:17829-17848 Msa1460010:CDS 30.0%
! TATCAAAGATTTGGCTTAGA+GGG + tig0040574:17830-17849 Msa1460010:CDS 30.0%
TTTCCATTACAAAGCAATGT+TGG + tig0040574:17913-17932 Msa1460010:CDS 30.0%
! AAGTGGTAATGATGATTTGA+AGG + tig0040574:17936-17955 Msa1460010:CDS 30.0%
! AGTGGTAATGATGATTTGAA+GGG + tig0040574:17937-17956 Msa1460010:CDS 30.0%
!!! AGAAGTTTTGTGCCATTTCA+AGG + tig0040574:16650-16669 Msa1460010:CDS 35.0%
TAATACGGTGGTTGTTCTAA+TGG - tig0040574:16701-16720 None:intergenic 35.0%
TGTGGTTGAAAATAATACGG+TGG - tig0040574:16713-16732 None:intergenic 35.0%
GGGTGTGGTTGAAAATAATA+CGG - tig0040574:16716-16735 None:intergenic 35.0%
CTTAGAGTAGAAACTGTGAT+AGG - tig0040574:16749-16768 None:intergenic 35.0%
!!! GCTGTTGTTTTCTTCATTTC+TGG + tig0040574:16854-16873 Msa1460010:CDS 35.0%
GTAACATCATCCAATTCATC+AGG - tig0040574:16929-16948 None:intergenic 35.0%
ATGATGTTACTGCTCTTCAA+GGG + tig0040574:16939-16958 Msa1460010:CDS 35.0%
!! CTTTTTCATCTTCATGATGC+TGG + tig0040574:16974-16993 Msa1460010:CDS 35.0%
AACAAACAGCACAGTCAAAA+GGG - tig0040574:17069-17088 None:intergenic 35.0%
AAACAAACAGCACAGTCAAA+AGG - tig0040574:17070-17089 None:intergenic 35.0%
TTGAGCATGAAGATAAGCTT+AGG + tig0040574:17098-17117 Msa1460010:CDS 35.0%
!! TGAAAAGCATGGCTACATTT+TGG - tig0040574:17130-17149 None:intergenic 35.0%
! ATGTAGCCATGCTTTTCATA+TGG + tig0040574:17132-17151 Msa1460010:CDS 35.0%
TACACTCCATATGAAAAGCA+TGG - tig0040574:17141-17160 None:intergenic 35.0%
!! AGCAAATTAGCTCTACAAAG+AGG - tig0040574:17196-17215 None:intergenic 35.0%
AAACAATTGTGGTTCTCCTT+TGG + tig0040574:17231-17250 Msa1460010:CDS 35.0%
!! GATTCTAGAACAAGAACCAA+AGG - tig0040574:17250-17269 None:intergenic 35.0%
!! TTGGTTCTTGTTCTAGAATC+TGG + tig0040574:17250-17269 Msa1460010:CDS 35.0%
! AATCTGGTAGTGATACTTCA+AGG + tig0040574:17266-17285 Msa1460010:CDS 35.0%
! ATCTGGTAGTGATACTTCAA+GGG + tig0040574:17267-17286 Msa1460010:CDS 35.0%
ATTTCTACAGGTAGTGTTGT+TGG + tig0040574:17316-17335 Msa1460010:CDS 35.0%
AATTCTCATCTTGGTTGTTG+CGG + tig0040574:17364-17383 Msa1460010:CDS 35.0%
! CTGTTAAGCTTGGAAAGTAT+AGG + tig0040574:17479-17498 Msa1460010:CDS 35.0%
! GGAAAGTATAGGAATGTTGA+TGG + tig0040574:17490-17509 Msa1460010:CDS 35.0%
! AAGTATAGGAATGTTGATGG+TGG + tig0040574:17493-17512 Msa1460010:CDS 35.0%
! AATGTTTTGCCTTTGATTCC+AGG + tig0040574:17658-17677 Msa1460010:CDS 35.0%
TGTTAAAGGTAGTACTAGTG+AGG + tig0040574:17768-17787 Msa1460010:CDS 35.0%
GTTAAAGGTAGTACTAGTGA+GGG + tig0040574:17769-17788 Msa1460010:CDS 35.0%
! ATGTAGCTGATTCATCTAGA+AGG + tig0040574:17875-17894 Msa1460010:CDS 35.0%
! TGTAGCTGATTCATCTAGAA+GGG + tig0040574:17876-17895 Msa1460010:CDS 35.0%
CTTCCAACATTGCTTTGTAA+TGG - tig0040574:17919-17938 None:intergenic 35.0%
TTACAAAGCAATGTTGGAAG+TGG + tig0040574:17919-17938 Msa1460010:CDS 35.0%
GATGATTTGAAGGGTAAGAA+TGG + tig0040574:17946-17965 Msa1460010:CDS 35.0%
AGAATGGCATGTTTCATACA+AGG + tig0040574:17962-17981 Msa1460010:CDS 35.0%
!!! AGAAGTTTTGTGCCATTTCA+AGG + tig0040574:16650-16669 Msa1460010:CDS 35.0%
TAATACGGTGGTTGTTCTAA+TGG - tig0040574:16701-16720 None:intergenic 35.0%
TGTGGTTGAAAATAATACGG+TGG - tig0040574:16713-16732 None:intergenic 35.0%
GGGTGTGGTTGAAAATAATA+CGG - tig0040574:16716-16735 None:intergenic 35.0%
CTTAGAGTAGAAACTGTGAT+AGG - tig0040574:16749-16768 None:intergenic 35.0%
!!! GCTGTTGTTTTCTTCATTTC+TGG + tig0040574:16854-16873 Msa1460010:CDS 35.0%
GTAACATCATCCAATTCATC+AGG - tig0040574:16929-16948 None:intergenic 35.0%
ATGATGTTACTGCTCTTCAA+GGG + tig0040574:16939-16958 Msa1460010:CDS 35.0%
!! CTTTTTCATCTTCATGATGC+TGG + tig0040574:16974-16993 Msa1460010:CDS 35.0%
AACAAACAGCACAGTCAAAA+GGG - tig0040574:17069-17088 None:intergenic 35.0%
AAACAAACAGCACAGTCAAA+AGG - tig0040574:17070-17089 None:intergenic 35.0%
TTGAGCATGAAGATAAGCTT+AGG + tig0040574:17098-17117 Msa1460010:CDS 35.0%
!! TGAAAAGCATGGCTACATTT+TGG - tig0040574:17130-17149 None:intergenic 35.0%
! ATGTAGCCATGCTTTTCATA+TGG + tig0040574:17132-17151 Msa1460010:CDS 35.0%
TACACTCCATATGAAAAGCA+TGG - tig0040574:17141-17160 None:intergenic 35.0%
!! AGCAAATTAGCTCTACAAAG+AGG - tig0040574:17196-17215 None:intergenic 35.0%
AAACAATTGTGGTTCTCCTT+TGG + tig0040574:17231-17250 Msa1460010:CDS 35.0%
!! GATTCTAGAACAAGAACCAA+AGG - tig0040574:17250-17269 None:intergenic 35.0%
!! TTGGTTCTTGTTCTAGAATC+TGG + tig0040574:17250-17269 Msa1460010:CDS 35.0%
! AATCTGGTAGTGATACTTCA+AGG + tig0040574:17266-17285 Msa1460010:CDS 35.0%
! ATCTGGTAGTGATACTTCAA+GGG + tig0040574:17267-17286 Msa1460010:CDS 35.0%
ATTTCTACAGGTAGTGTTGT+TGG + tig0040574:17316-17335 Msa1460010:CDS 35.0%
AATTCTCATCTTGGTTGTTG+CGG + tig0040574:17364-17383 Msa1460010:CDS 35.0%
! CTGTTAAGCTTGGAAAGTAT+AGG + tig0040574:17479-17498 Msa1460010:CDS 35.0%
! GGAAAGTATAGGAATGTTGA+TGG + tig0040574:17490-17509 Msa1460010:CDS 35.0%
! AAGTATAGGAATGTTGATGG+TGG + tig0040574:17493-17512 Msa1460010:CDS 35.0%
! AATGTTTTGCCTTTGATTCC+AGG + tig0040574:17658-17677 Msa1460010:CDS 35.0%
TGTTAAAGGTAGTACTAGTG+AGG + tig0040574:17768-17787 Msa1460010:CDS 35.0%
GTTAAAGGTAGTACTAGTGA+GGG + tig0040574:17769-17788 Msa1460010:CDS 35.0%
! ATGTAGCTGATTCATCTAGA+AGG + tig0040574:17875-17894 Msa1460010:CDS 35.0%
! TGTAGCTGATTCATCTAGAA+GGG + tig0040574:17876-17895 Msa1460010:CDS 35.0%
CTTCCAACATTGCTTTGTAA+TGG - tig0040574:17919-17938 None:intergenic 35.0%
TTACAAAGCAATGTTGGAAG+TGG + tig0040574:17919-17938 Msa1460010:CDS 35.0%
GATGATTTGAAGGGTAAGAA+TGG + tig0040574:17946-17965 Msa1460010:CDS 35.0%
AGAATGGCATGTTTCATACA+AGG + tig0040574:17962-17981 Msa1460010:CDS 35.0%
!! AAGGTGTTGTCACCTTGAAA+TGG - tig0040574:16665-16684 None:intergenic 40.0%
!! TAATGGTGATGGAGTCATGA+AGG - tig0040574:16684-16703 None:intergenic 40.0%
GAAACTGTGATAGGTGGAAA+TGG - tig0040574:16740-16759 None:intergenic 40.0%
AGAGTAGAAACTGTGATAGG+TGG - tig0040574:16746-16765 None:intergenic 40.0%
GATGATGTTACTGCTCTTCA+AGG + tig0040574:16938-16957 Msa1460010:CDS 40.0%
GGAAATTGTTCCAGAAAGAG+AGG + tig0040574:17288-17307 Msa1460010:CDS 40.0%
!! TTGGTAGGACTAGTTCAGTT+AGG + tig0040574:17335-17354 Msa1460010:CDS 40.0%
AGGACAGCAAATTCTCATCT+TGG + tig0040574:17355-17374 Msa1460010:CDS 40.0%
! CCAACTTCAACTTTTGGATC+AGG - tig0040574:17433-17452 None:intergenic 40.0%
CCTGATCCAAAAGTTGAAGT+TGG + tig0040574:17430-17449 Msa1460010:CDS 40.0%
GATCCAAAAGTTGAAGTTGG+AGG + tig0040574:17433-17452 Msa1460010:CDS 40.0%
! TCTCCTCCAACTTCAACTTT+TGG - tig0040574:17439-17458 None:intergenic 40.0%
AAAGTTGAAGTTGGAGGAGA+TGG + tig0040574:17439-17458 Msa1460010:CDS 40.0%
!! TATAGGAATGTTGATGGTGG+AGG + tig0040574:17496-17515 Msa1460010:CDS 40.0%
!! ATAGGAATGTTGATGGTGGA+GGG + tig0040574:17497-17516 Msa1460010:CDS 40.0%
GCAACAATGTGGATAACAGA+AGG + tig0040574:17533-17552 Msa1460010:CDS 40.0%
GGATGAAACTTCATCATTGC+AGG + tig0040574:17588-17607 Msa1460010:CDS 40.0%
ATCCTATGACCTGGAATCAA+AGG - tig0040574:17670-17689 None:intergenic 40.0%
AGAGCTGAGGATGTTGTTAA+AGG + tig0040574:17754-17773 Msa1460010:CDS 40.0%
! TGGTATTGGAAGGAGTAGAA+AGG + tig0040574:17795-17814 Msa1460010:CDS 40.0%
! CTAGAAGGGCTGTTTCATTT+AGG + tig0040574:17890-17909 Msa1460010:CDS 40.0%
!! AAGGTGTTGTCACCTTGAAA+TGG - tig0040574:16665-16684 None:intergenic 40.0%
!! TAATGGTGATGGAGTCATGA+AGG - tig0040574:16684-16703 None:intergenic 40.0%
GAAACTGTGATAGGTGGAAA+TGG - tig0040574:16740-16759 None:intergenic 40.0%
AGAGTAGAAACTGTGATAGG+TGG - tig0040574:16746-16765 None:intergenic 40.0%
GATGATGTTACTGCTCTTCA+AGG + tig0040574:16938-16957 Msa1460010:CDS 40.0%
GGAAATTGTTCCAGAAAGAG+AGG + tig0040574:17288-17307 Msa1460010:CDS 40.0%
!! TTGGTAGGACTAGTTCAGTT+AGG + tig0040574:17335-17354 Msa1460010:CDS 40.0%
AGGACAGCAAATTCTCATCT+TGG + tig0040574:17355-17374 Msa1460010:CDS 40.0%
! CCAACTTCAACTTTTGGATC+AGG - tig0040574:17433-17452 None:intergenic 40.0%
CCTGATCCAAAAGTTGAAGT+TGG + tig0040574:17430-17449 Msa1460010:CDS 40.0%
GATCCAAAAGTTGAAGTTGG+AGG + tig0040574:17433-17452 Msa1460010:CDS 40.0%
! TCTCCTCCAACTTCAACTTT+TGG - tig0040574:17439-17458 None:intergenic 40.0%
AAAGTTGAAGTTGGAGGAGA+TGG + tig0040574:17439-17458 Msa1460010:CDS 40.0%
!! TATAGGAATGTTGATGGTGG+AGG + tig0040574:17496-17515 Msa1460010:CDS 40.0%
!! ATAGGAATGTTGATGGTGGA+GGG + tig0040574:17497-17516 Msa1460010:CDS 40.0%
GCAACAATGTGGATAACAGA+AGG + tig0040574:17533-17552 Msa1460010:CDS 40.0%
GGATGAAACTTCATCATTGC+AGG + tig0040574:17588-17607 Msa1460010:CDS 40.0%
ATCCTATGACCTGGAATCAA+AGG - tig0040574:17670-17689 None:intergenic 40.0%
AGAGCTGAGGATGTTGTTAA+AGG + tig0040574:17754-17773 Msa1460010:CDS 40.0%
! TGGTATTGGAAGGAGTAGAA+AGG + tig0040574:17795-17814 Msa1460010:CDS 40.0%
! CTAGAAGGGCTGTTTCATTT+AGG + tig0040574:17890-17909 Msa1460010:CDS 40.0%
GGTGGTTGTTCTAATGGTGA+TGG - tig0040574:16695-16714 None:intergenic 45.0%
CTGTGATAGGTGGAAATGGT+GGG - tig0040574:16736-16755 None:intergenic 45.0%
ACTGTGATAGGTGGAAATGG+TGG - tig0040574:16737-16756 None:intergenic 45.0%
GAGTAGAGACCCTGATGAAT+TGG + tig0040574:16916-16935 Msa1460010:CDS 45.0%
GAAATTGCAGCCTCTCTTTC+TGG - tig0040574:17301-17320 None:intergenic 45.0%
AGAGAGGCTGCAATTTCTAC+AGG + tig0040574:17304-17323 Msa1460010:CDS 45.0%
! CTACAGGTAGTGTTGTTGGT+AGG + tig0040574:17320-17339 Msa1460010:CDS 45.0%
!! TAGGAATGTTGATGGTGGAG+GGG + tig0040574:17498-17517 Msa1460010:CDS 45.0%
AGGAAGTAGCAGCAACAATG+TGG + tig0040574:17522-17541 Msa1460010:CDS 45.0%
TGCCTTTGATTCCAGGTCAT+AGG + tig0040574:17665-17684 Msa1460010:CDS 45.0%
GACATTGCAATCCTATGACC+TGG - tig0040574:17679-17698 None:intergenic 45.0%
CTTTGATTCAGCTAGAGCTG+AGG + tig0040574:17741-17760 Msa1460010:CDS 45.0%
GGTGGTTGTTCTAATGGTGA+TGG - tig0040574:16695-16714 None:intergenic 45.0%
CTGTGATAGGTGGAAATGGT+GGG - tig0040574:16736-16755 None:intergenic 45.0%
ACTGTGATAGGTGGAAATGG+TGG - tig0040574:16737-16756 None:intergenic 45.0%
GAGTAGAGACCCTGATGAAT+TGG + tig0040574:16916-16935 Msa1460010:CDS 45.0%
GAAATTGCAGCCTCTCTTTC+TGG - tig0040574:17301-17320 None:intergenic 45.0%
AGAGAGGCTGCAATTTCTAC+AGG + tig0040574:17304-17323 Msa1460010:CDS 45.0%
! CTACAGGTAGTGTTGTTGGT+AGG + tig0040574:17320-17339 Msa1460010:CDS 45.0%
!! TAGGAATGTTGATGGTGGAG+GGG + tig0040574:17498-17517 Msa1460010:CDS 45.0%
AGGAAGTAGCAGCAACAATG+TGG + tig0040574:17522-17541 Msa1460010:CDS 45.0%
TGCCTTTGATTCCAGGTCAT+AGG + tig0040574:17665-17684 Msa1460010:CDS 45.0%
GACATTGCAATCCTATGACC+TGG - tig0040574:17679-17698 None:intergenic 45.0%
CTTTGATTCAGCTAGAGCTG+AGG + tig0040574:17741-17760 Msa1460010:CDS 45.0%
!! ATAGGTGGAAATGGTGGGTG+TGG - tig0040574:16731-16750 None:intergenic 50.0%
TCATCAGGGTCTCTACTCTG+AGG - tig0040574:16914-16933 None:intergenic 50.0%
CATCTTGGTTGTTGCGGAGA+CGG + tig0040574:17370-17389 Msa1460010:CDS 50.0%
TGTTGCGGAGACGGTGAATT+CGG + tig0040574:17379-17398 Msa1460010:CDS 50.0%
CGGTGAATTCGGAGGTGATT+TGG + tig0040574:17390-17409 Msa1460010:CDS 50.0%
TGAAGTTGGAGGAGATGGTG+TGG + tig0040574:17444-17463 Msa1460010:CDS 50.0%
!! AATGTTGATGGTGGAGGGGA+AGG + tig0040574:17502-17521 Msa1460010:CDS 50.0%
!! ACTAGTGAGGGTGCTGGTAT+TGG + tig0040574:17781-17800 Msa1460010:CDS 50.0%
!! ATAGGTGGAAATGGTGGGTG+TGG - tig0040574:16731-16750 None:intergenic 50.0%
TCATCAGGGTCTCTACTCTG+AGG - tig0040574:16914-16933 None:intergenic 50.0%
CATCTTGGTTGTTGCGGAGA+CGG + tig0040574:17370-17389 Msa1460010:CDS 50.0%
TGTTGCGGAGACGGTGAATT+CGG + tig0040574:17379-17398 Msa1460010:CDS 50.0%
CGGTGAATTCGGAGGTGATT+TGG + tig0040574:17390-17409 Msa1460010:CDS 50.0%
TGAAGTTGGAGGAGATGGTG+TGG + tig0040574:17444-17463 Msa1460010:CDS 50.0%
!! AATGTTGATGGTGGAGGGGA+AGG + tig0040574:17502-17521 Msa1460010:CDS 50.0%
!! ACTAGTGAGGGTGCTGGTAT+TGG + tig0040574:17781-17800 Msa1460010:CDS 50.0%
! GGTAGTACTAGTGAGGGTGC+TGG + tig0040574:17775-17794 Msa1460010:CDS 55.0%
!! GTGAGGGTGCTGGTATTGGA+AGG + tig0040574:17785-17804 Msa1460010:CDS 55.0%
! GGTAGTACTAGTGAGGGTGC+TGG + tig0040574:17775-17794 Msa1460010:CDS 55.0%
!! GTGAGGGTGCTGGTATTGGA+AGG + tig0040574:17785-17804 Msa1460010:CDS 55.0%
TGCGGAGACGGTGAATTCGG+AGG + tig0040574:17382-17401 Msa1460010:CDS 60.0%
TGCGGAGACGGTGAATTCGG+AGG + tig0040574:17382-17401 Msa1460010:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0040574 gene 16644 18002 16644 ID=Msa1460010;Name=Msa1460010
tig0040574 mRNA 16644 18002 16644 ID=Msa1460010-mRNA-1;Parent=Msa1460010;Name=Msa1460010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|453
tig0040574 exon 16644 18002 16644 ID=Msa1460010-mRNA-1:exon:22512;Parent=Msa1460010-mRNA-1
tig0040574 CDS 16644 18002 16644 ID=Msa1460010-mRNA-1:cds;Parent=Msa1460010-mRNA-1
Gene Sequence

>Msa1460010

ATGGGTAGAAGTTTTGTGCCATTTCAAGGTGACAACACCTTCATGACTCCATCACCATTAGAACAACCACCGTATTATTTTCAACCACACCCACCATTTCCACCTATCACAGTTTCTACTCTAAGATCTAATAATAATAATAATAATTTCAATTTTAACAATAACACCTTAAAGGTTAGTCCAAGTATTCTTATAATCATTACAATATTAGCTGTTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTAGTTAGATTTCTATGGAGACCTCAGAGTAGAGACCCTGATGAATTGGATGATGTTACTGCTCTTCAAGGGCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCATTCATTGATACACTTCCAGTGTTTCTTTACAAAACTATTATAGGATTGAAAGTGAACCCTTTTGACTGTGCTGTTTGTTTGTGTGAATTTGAGCATGAAGATAAGCTTAGGTTGTTGCCAAAATGTAGCCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTCCATGATTTCAACACAAACAATTGTGGTTCTCCTTTGGTTCTTGTTCTAGAATCTGGTAGTGATACTTCAAGGGAAATTGTTCCAGAAAGAGAGGCTGCAATTTCTACAGGTAGTGTTGTTGGTAGGACTAGTTCAGTTAGGACAGCAAATTCTCATCTTGGTTGTTGCGGAGACGGTGAATTCGGAGGTGATTTGGCTTCTGTTGAAAACATTCCTGATCCAAAAGTTGAAGTTGGAGGAGATGGTGTGGAGAAAGTTGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGCAGCAACAATGTGGATAACAGAAGGTGTTTTTCAATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATAAAACAGCAATTGAGTAAGAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGTCATAGGATTGCAATGTCAGAATGTGATTGTGAATCCAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGCTAGAGCTGAGGATGTTGTTAAAGGTAGTACTAGTGAGGGTGCTGGTATTGGAAGGAGTAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAAAAATGGTGATGTAGCTGATTCATCTAGAAGGGCTGTTTCATTTAGGTTTCCATTACAAAGCAATGTTGGAAGTGGTAATGATGATTTGAAGGGTAAGAATGGCATGTTTCATACAAGGAGTACTGTTTCTGAGATG
Protein sequence

>Msa1460010

MGRSFVPFQGDNTFMTPSPLEQPPYYFQPHPPFPPITVSTLRSNNNNNNFNFNNNTLKVSPSILIIITILAVVFFISGLLHLLVRFLWRPQSRDPDELDDVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFEHEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTNNCGSPLVLVLESGSDTSREIVPEREAAISTGSVVGRTSSVRTANSHLGCCGDGEFGGDLASVENIPDPKVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDNRRCFSMGSFAYIMDETSSLQVPIRTPIKQQLSKKKKNVLPLIPGHRIAMSECDCESRRDFKFASFDSARAEDVVKGSTSEGAGIGRSRKESFSISKIWLRGKKDKKNGDVADSSRRAVSFRFPLQSNVGSGNDDLKGKNGMFHTRSTVSEM