AlfalfaGEDB | Msa1460010

M. sativa cultivar zhongmu-4 / Msa1460010

KEGG: K19041
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF13639.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460010	XP_003610233.2	97.130	453	12	1	1	453	1	452	0.0	908

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460010	sp\|Q9ZV53\|ATL49_ARATH	49.749	398	130	14	48	425	28	375	7.11e-97	300

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460010	G7JEB6	97.130	453	12	1	1	453	1	452	0.0	908

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018220	Msa1460010	0.828832	7.221130e-55	-8.615850e-47
Msa0027540	Msa1460010	0.823694	1.206930e-53	-8.615850e-47
Msa0030000	Msa1460010	0.807858	4.115560e-50	-8.615850e-47
Msa0030590	Msa1460010	0.805911	1.062142e-49	-8.615850e-47
Msa0032400	Msa1460010	0.800113	1.678227e-48	-8.615850e-47
Msa0052460	Msa1460010	0.816539	5.248131e-52	-8.615850e-47
Msa0059960	Msa1460010	-0.817024	4.086880e-52	-8.615850e-47
Msa0075310	Msa1460010	0.824739	6.856086e-54	-8.615850e-47
Msa0091770	Msa1460010	0.809784	1.594754e-50	-8.615850e-47
Msa0094420	Msa1460010	0.830526	2.794365e-55	-8.615850e-47

Showing 1 to 10 of 177 entries

Previous1 2 3 4 5…18Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460010	MtrunA17_Chr4g0073141	97.130	453	12	1	1	453	1	452	0.0	908
Msa1460010	MtrunA17_Chr6g0453511	96.552	145	5	0	308	452	1	145	7.31e-95	282
Msa1460010	MtrunA17_Chr5g0413841	38.095	420	153	16	9	408	9	341	7.70e-68	221
Msa1460010	MtrunA17_Chr6g0451161	40.110	364	132	13	58	407	66	357	1.64e-64	212
Msa1460010	MtrunA17_Chr4g0059281	36.160	401	140	15	16	407	6	299	4.49e-62	204
Msa1460010	MtrunA17_Chr8g0364881	40.591	372	124	17	63	407	5	306	1.61e-60	200
Msa1460010	MtrunA17_Chr1g0191601	42.177	147	77	2	47	191	33	173	3.85e-30	120
Msa1460010	MtrunA17_Chr3g0132491	41.304	138	72	3	56	191	52	182	6.45e-29	117
Msa1460010	MtrunA17_Chr5g0411081	33.636	220	112	4	60	268	56	252	2.64e-26	109
Msa1460010	MtrunA17_Chr7g0273051	39.073	151	79	4	43	191	27	166	2.98e-26	109

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460010	AT2G18650.1	49.749	398	130	14	48	425	28	375	7.22e-98	300
Msa1460010	AT4G30400.1	52.342	363	128	14	90	429	78	418	3.33e-94	292
Msa1460010	AT5G40250.1	39.948	383	125	13	58	412	40	345	3.66e-65	214
Msa1460010	AT5G57750.1	58.282	163	63	2	59	216	32	194	9.27e-56	184
Msa1460010	AT1G23980.1	60.417	144	46	3	58	191	48	190	1.94e-52	181
Msa1460010	AT3G48030.2	51.128	133	60	2	63	190	42	174	3.60e-36	134
Msa1460010	AT3G48030.1	51.128	133	60	2	63	190	120	252	7.55e-36	135
Msa1460010	AT1G72200.1	39.416	137	76	3	58	191	58	190	1.74e-25	108
Msa1460010	AT4G40070.1	33.333	168	102	3	27	190	8	169	5.22e-25	105
Msa1460010	AT2G35000.1	37.405	131	80	1	63	191	51	181	2.19e-24	104

Showing 1 to 10 of 96 entries

Previous1 2 3 4 5…10Next

Find 90 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACAGCACAGTCAAA+AGG	0.440166	tig0040574:-17086	None:intergenic
AAACAATTGTGGTTCTCCTT+TGG	0.389738	tig0040574:+17231	Msa1460010:CDS
AAAGTTGAAGTTGGAGGAGA+TGG	0.513670	tig0040574:+17439	Msa1460010:CDS
AAAGTTGTTACTGTTAAGCT+TGG	0.427283	tig0040574:+17469	Msa1460010:CDS
AACAAACAGCACAGTCAAAA+GGG	0.510919	tig0040574:-17085	None:intergenic
AAGGTGTTGTCACCTTGAAA+TGG	0.541591	tig0040574:-16681	None:intergenic
AAGTATAGGAATGTTGATGG+TGG	0.610465	tig0040574:+17493	Msa1460010:CDS
AAGTGGTAATGATGATTTGA+AGG	0.545819	tig0040574:+17936	Msa1460010:CDS
AATACTTGGACTAACCTTTA+AGG	0.197221	tig0040574:-16829	None:intergenic
AATCTGGTAGTGATACTTCA+AGG	0.475232	tig0040574:+17266	Msa1460010:CDS

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATACTTGGACTAACCTTTA+AGG	-	tig0040574:16813-16832	None:intergenic	30.0%
TAACATCATCCAATTCATCA+GGG	-	tig0040574:16928-16947	None:intergenic	30.0%
GAAGTGTATCAATGAATGAT+TGG	-	tig0040574:17006-17025	None:intergenic	30.0%
GATTTCAACACAAACAATTG+TGG	+	tig0040574:17220-17239	Msa1460010:CDS	30.0%
AAAGTTGTTACTGTTAAGCT+TGG	+	tig0040574:17469-17488	Msa1460010:CDS	30.0%
GGGATCATTTGCTTATATTA+TGG	+	tig0040574:17567-17586	Msa1460010:CDS	30.0%
TTTCCATTACAAAGCAATGT+TGG	+	tig0040574:17913-17932	Msa1460010:CDS	30.0%
AATACTTGGACTAACCTTTA+AGG	-	tig0040574:16813-16832	None:intergenic	30.0%
TAACATCATCCAATTCATCA+GGG	-	tig0040574:16928-16947	None:intergenic	30.0%
GAAGTGTATCAATGAATGAT+TGG	-	tig0040574:17006-17025	None:intergenic	30.0%

Showing 1 to 10 of 208 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
tig0040574	gene	16644	18002	16644	ID=Msa1460010;Name=Msa1460010
tig0040574	mRNA	16644	18002	16644	ID=Msa1460010-mRNA-1;Parent=Msa1460010;Name=Msa1460010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|453
tig0040574	exon	16644	18002	16644	ID=Msa1460010-mRNA-1:exon:22512;Parent=Msa1460010-mRNA-1
tig0040574	CDS	16644	18002	16644	ID=Msa1460010-mRNA-1:cds;Parent=Msa1460010-mRNA-1

Gene Sequence

>Msa1460010

ATGGGTAGAAGTTTTGTGCCATTTCAAGGTGACAACACCTTCATGACTCCATCACCATTAGAACAACCACCGTATTATTTTCAACCACACCCACCATTTCCACCTATCACAGTTTCTACTCTAAGATCTAATAATAATAATAATAATTTCAATTTTAACAATAACACCTTAAAGGTTAGTCCAAGTATTCTTATAATCATTACAATATTAGCTGTTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTAGTTAGATTTCTATGGAGACCTCAGAGTAGAGACCCTGATGAATTGGATGATGTTACTGCTCTTCAAGGGCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCATTCATTGATACACTTCCAGTGTTTCTTTACAAAACTATTATAGGATTGAAAGTGAACCCTTTTGACTGTGCTGTTTGTTTGTGTGAATTTGAGCATGAAGATAAGCTTAGGTTGTTGCCAAAATGTAGCCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTCCATGATTTCAACACAAACAATTGTGGTTCTCCTTTGGTTCTTGTTCTAGAATCTGGTAGTGATACTTCAAGGGAAATTGTTCCAGAAAGAGAGGCTGCAATTTCTACAGGTAGTGTTGTTGGTAGGACTAGTTCAGTTAGGACAGCAAATTCTCATCTTGGTTGTTGCGGAGACGGTGAATTCGGAGGTGATTTGGCTTCTGTTGAAAACATTCCTGATCCAAAAGTTGAAGTTGGAGGAGATGGTGTGGAGAAAGTTGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGCAGCAACAATGTGGATAACAGAAGGTGTTTTTCAATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATAAAACAGCAATTGAGTAAGAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGTCATAGGATTGCAATGTCAGAATGTGATTGTGAATCCAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGCTAGAGCTGAGGATGTTGTTAAAGGTAGTACTAGTGAGGGTGCTGGTATTGGAAGGAGTAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAAAAATGGTGATGTAGCTGATTCATCTAGAAGGGCTGTTTCATTTAGGTTTCCATTACAAAGCAATGTTGGAAGTGGTAATGATGATTTGAAGGGTAAGAATGGCATGTTTCATACAAGGAGTACTGTTTCTGAGATG

Protein sequence

>Msa1460010

MGRSFVPFQGDNTFMTPSPLEQPPYYFQPHPPFPPITVSTLRSNNNNNNFNFNNNTLKVSPSILIIITILAVVFFISGLLHLLVRFLWRPQSRDPDELDDVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFEHEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTNNCGSPLVLVLESGSDTSREIVPEREAAISTGSVVGRTSSVRTANSHLGCCGDGEFGGDLASVENIPDPKVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDNRRCFSMGSFAYIMDETSSLQVPIRTPIKQQLSKKKKNVLPLIPGHRIAMSECDCESRRDFKFASFDSARAEDVVKGSTSEGAGIGRSRKESFSISKIWLRGKKDKKNGDVADSSRRAVSFRFPLQSNVGSGNDDLKGKNGMFHTRSTVSEM