AlfalfaGEDB | MS.gene77828

M. sativa cultivar XinJiangDaYe / MS.gene77828

KEGG: K08909
GO: -
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77828.t1	XP_013454459.1	82.5	274	2	1	1	228	1	274	6.80E-118	433.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77828.t1	Q32904	76.1	272	21	1	1	228	1	272	9.0e-111	401.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77828.t1	I3SZG9	82.5	274	2	1	1	228	1	274	4.9e-118	433.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene77828	0.803117	4.06E-49	-1.69E-46
MS.gene049171	MS.gene77828	0.898922	3.30E-77	-1.69E-46
MS.gene049173	MS.gene77828	0.851344	9.44E-61	-1.69E-46
MS.gene049217	MS.gene77828	0.880702	4.41E-70	-1.69E-46
MS.gene049222	MS.gene77828	0.894929	1.55E-75	-1.69E-46
MS.gene049232	MS.gene77828	0.877903	4.32E-69	-1.69E-46
MS.gene049285	MS.gene77828	0.928052	4.98E-92	-1.69E-46
MS.gene049320	MS.gene77828	0.937107	5.93E-98	-1.69E-46
MS.gene049369	MS.gene77828	0.819063	1.41E-52	-1.69E-46
MS.gene04939	MS.gene77828	0.850675	1.46E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77828.t1	MTR_5g098785	82.482	274	2	1	1	228	1	274	8.96e-157	436
MS.gene77828.t1	MTR_5g098780	81.250	272	7	1	1	228	1	272	1.61e-153	427
MS.gene77828.t1	MTR_5g098770	94.505	91	5	0	138	228	1	91	5.95e-56	173
MS.gene77828.t1	MTR_3g101670	45.854	205	92	8	27	228	74	262	8.68e-49	161
MS.gene77828.t1	MTR_3g435460	42.453	212	89	8	23	228	4	188	1.26e-39	135
MS.gene77828.t1	MTR_8g023790	41.176	204	101	6	27	228	79	265	3.17e-39	136
MS.gene77828.t1	MTR_3g435460	42.788	208	86	8	27	228	69	249	9.62e-39	135
MS.gene77828.t1	MTR_2g042720	39.904	208	98	7	27	228	78	264	5.24e-36	128
MS.gene77828.t1	MTR_6g011870	39.320	206	90	9	28	223	73	253	9.62e-31	114
MS.gene77828.t1	MTR_6g011880	39.320	206	90	9	28	223	73	253	9.72e-31	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77828.t1	AT1G61520	89.474	209	22	0	20	228	7	215	9.21e-136	380
MS.gene77828.t1	AT1G61520	91.584	202	17	0	27	228	69	270	3.78e-135	380
MS.gene77828.t1	AT1G61520	91.584	202	17	0	27	228	69	270	3.78e-135	380
MS.gene77828.t1	AT1G45474	43.750	192	94	7	41	228	70	251	6.85e-45	150
MS.gene77828.t1	AT1G45474	43.750	192	94	7	41	228	70	251	6.85e-45	150
MS.gene77828.t1	AT3G47470	43.523	193	77	7	41	228	85	250	5.91e-39	135
MS.gene77828.t1	AT3G61470	41.176	204	101	6	27	228	68	254	8.52e-38	132
MS.gene77828.t1	AT1G19150	37.745	204	108	6	27	228	81	267	8.78e-33	120
MS.gene77828.t1	AT5G54270	39.320	206	92	8	28	223	71	253	1.14e-30	114
MS.gene77828.t1	AT2G05070	40.976	205	86	10	29	223	74	253	1.57e-30	114

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Find 77 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGAGGGTTAAATAT+AGG	0.452200	5.1:+80089806	None:intergenic
AACACAGAAGATTCCAAGAT+TGG	0.467039	5.1:-80089916	MS.gene77828:CDS
AACGGCCGCTTCGCAATGTT+GGG	0.433209	5.1:-80090109	MS.gene77828:CDS
AAGCTGAAGGAAGTTAAGAA+TGG	0.479661	5.1:-80089752	MS.gene77828:CDS
AATGAATCCACCAGTTCCTT+CGG	0.395198	5.1:+80090165	None:intergenic
AATTTCAGGTGCTATAGCTC+CGG	0.537587	5.1:+80090081	None:intergenic
ACCAGGGTAAGCTGGTTCGC+CGG	0.543633	5.1:+80089832	None:intergenic
ACCGGCGTGATTCCACCTGC+AGG	0.575662	5.1:-80090007	MS.gene77828:CDS
AGATCACTCCCATCTTCAAT+AGG	0.372428	5.1:-80091418	MS.gene77828:CDS
AGCCAGGATTGTACCAATCT+TGG	0.425513	5.1:+80089903	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCTCAAAAGCCTTCT+AGG	+	chr5.1:80090546-80090565	None:intergenic	30.0%
AAAATCTCAAAAGCCTTCTA+GGG	+	chr5.1:80090545-80090564	None:intergenic	30.0%
AAACCAAGAGGGTTAAATAT+AGG	+	chr5.1:80091316-80091335	None:intergenic	30.0%
AAAGCAAAGTCTTTCTTACT+TGG	-	chr5.1:80090027-80090046	MS.gene77828:CDS	30.0%
ATATTACAACTGTCTCATGT+GGG	-	chr5.1:80089849-80089868	MS.gene77828:CDS	30.0%
ATGGGAAAACAATACTTCTT+AGG	-	chr5.1:80091241-80091260	MS.gene77828:intron	30.0%
ATGTAGATATGCAACTTTGT+TGG	-	chr5.1:80090434-80090453	MS.gene77828:intron	30.0%
ATTGTGTTAGAACATAAGCT+TGG	-	chr5.1:80090763-80090782	MS.gene77828:intron	30.0%
CATGTTGTATAGTTGTGTTA+TGG	+	chr5.1:80090809-80090828	None:intergenic	30.0%
TTACTTGTGGTAACTTTGTA+TGG	-	chr5.1:80090497-80090516	MS.gene77828:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	80089626	80091515	80089626	ID=MS.gene77828
chr5.1	mRNA	80089626	80091515	80089626	ID=MS.gene77828.t1;Parent=MS.gene77828
chr5.1	exon	80091404	80091515	80091404	ID=MS.gene77828.t1.exon1;Parent=MS.gene77828.t1
chr5.1	CDS	80091404	80091515	80091404	ID=cds.MS.gene77828.t1;Parent=MS.gene77828.t1
chr5.1	exon	80089626	80090199	80089626	ID=MS.gene77828.t1.exon2;Parent=MS.gene77828.t1
chr5.1	CDS	80089626	80090199	80089626	ID=cds.MS.gene77828.t1;Parent=MS.gene77828.t1

Gene Sequence

>MS.gene77828

ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACTTTTGCAGCTGAGGCTGTGAGACAGAGTCTTGGAGCAAGATCACTCCCATCTTCAATAGGGTCTTCTAGAAAAGGTTCCTTTGTTGTCAAGGCAGCTTCTTCTCCTCCTGCCAAGGTCTATCTCTCACTCAAATTTTTCTTAATTATACATTTGCTTTTTATTAATAATAATGTCTCTGATGACCATATTACAACTGTCTCATGTGGGATTCGTTCTCTGTCTCTTGACGTTACAAAGTCAACTCTAACCACTGAACTGACAAATATACAAGTGCTTTGAACTATGTTTATATTAAAAATAACTTTCTTTTCTCTTTTTGGTGTTCAGCAAAATGGAGCAAATAGACAATTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGAAGGTAAATTCCTTAGTAGTTGAACAAAAAACTATTGTAAGGTGGATGTTTTGTGAGTAAAATTTAAGAACCTAGAGTATGCCTAAGTAAACAGTTTAATCAAGTGTTTATTATCGTTTATGATTATGTATAATCTACTTTCATGATTAAAGATGAAATTATTGAACTTTTTTATACAAGTTATTACTTGTTGTTCATACATGTTAGAAGTTGTTTTCATAAATTATTCTAAAAATCATATTGAAATAAGTTAAAGACGATGTAATTATGAAATATTTTTAAGTTAATTTTACAATCTCAACAAATTACTTATGCAAGTGCATGTGTTGAGGCATAAGCTCAGATTAGATCATATGACTAAGTACCCTTAACATTACAACATGTAGATATGCAACTTTGTTGGATAACACTTGTTTTTTAGTACCAATTTTTTATTTTTTATATTACTTGTGGTAACTTTGTATGGTAGATGTTTTGTGAGTCTAAAACCCTAGAAGGCTTTTGAGATTTTTTTTTTTTGATTAAGCACTTATTATCATTTATCGTTTATGATTATGCTTAATCTAATTTTATAGTTGTAGATGAAATGATTAAACTATTTATTTTAATAATTATTCTACAAAACCTATCGAAATAATCTAAAGACAGCTTGTAGACACATTTAAATTAAAGTTATTTTTATAGTTTCATCCAAATATTTAGACAAGTGATTGTGTTAGAACATAAGCTTGGATACTTGGACAACAAAGTACCCATAACACAACTATACAACATGTAGATATGCATGCAACTTTGTTGAGTAACACTATGTGTCAAGTATGAAATTGACTTTATTCGGTCTCATCATCACTTGCAGCCTTCCTGGTGACTTTGGATTTGACCCTCTAGGACTTTCAGATCCCGAAGGAACTGGTGGATTCATTGAGCCAAGATGGTTAGCATATGGCGAGATAATCAACGGCCGCTTCGCAATGTTGGGAGCAGCCGGAGCTATAGCACCTGAAATTCTCGGCAAAGCAGGTTTAATTCCCGCGGAAACAGCACTCCCTTGGTTCCAAACCGGCGTGATTCCACCTGCAGGAACATACAACTACTGGGCAGATAACTACACACTCTTTGTGATGGAAATGGCATTCATGGGATTTGCAGAACACAGAAGATTCCAAGATTGGTACAATCCTGGCTCCATGGGAAAACAATACTTCTTAGGACTTGAGAAAGGTCTTGGAGGTTCCGGCGAACCAGCTTACCCTGGTGGACCTATATTTAACCCTCTTGGTTTTGGTAAAGATGAGAAATCATTGAAGGAGTTAAAGCTGAAGGAAGTTAAGAATGGAAGGTTAGCTATGTTGGCAATATTGGGTTACTTTGTTCAAGCTCTTGTTACAGGAGTTGGACCATACCAAAACCTCTTAGATCATCTGGCTGACCCTGTCAACAACAACATCTTGACCAGTCTCAA

Protein sequence

>MS.gene77828.t1

MATQALVSSSSLTFAAEAVRQSLGARSLPSSIGSSRKGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVNNNILTSL