AlfalfaGEDB | MS.gene92305

M. sativa cultivar XinJiangDaYe / MS.gene92305

KEGG: K02692
GO: GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009522 GO:0009538 GO:0009987 GO:0015979 GO:0032991 GO:0044237 GO:0098796
PFAM: PF02531.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92305.t1	XP_003610706.1	97.1	210	5	1	1	210	1	209	6.30E-110	406.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92305.t1	P32869	78.2	216	32	3	1	210	1	207	2.2e-87	323.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92305.t1	G7K2D0	97.1	210	5	1	1	210	1	209	4.5e-110	406.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene92305	0.843649	1.23E-58	-1.69E-46
MS.gene049171	MS.gene92305	0.866726	2.31E-65	-1.69E-46
MS.gene049173	MS.gene92305	0.87004	1.97E-66	-1.69E-46
MS.gene049217	MS.gene92305	0.867198	1.63E-65	-1.69E-46
MS.gene049222	MS.gene92305	0.872398	3.28E-67	-1.69E-46
MS.gene049232	MS.gene92305	0.804047	2.61E-49	-1.69E-46
MS.gene049285	MS.gene92305	0.890087	1.35E-73	-1.69E-46
MS.gene049320	MS.gene92305	0.905441	4.28E-80	-1.69E-46
MS.gene049356	MS.gene92305	0.81253	4.05E-51	-1.69E-46
MS.gene049369	MS.gene92305	0.847632	1.02E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92305.t1	MTR_5g006130	97.143	210	5	1	1	210	1	209	1.21e-149	414
MS.gene92305.t1	MTR_1g104630	67.281	217	40	3	1	210	1	193	7.26e-95	275

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92305.t1	AT1G03130	73.684	209	49	3	3	210	1	204	2.45e-105	302
MS.gene92305.t1	AT4G02770	72.770	213	48	4	3	210	1	208	7.42e-102	293

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Find 60 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACAGTGTTTGGCTTT+AGG	0.250321	5.1:+1045525	MS.gene92305:CDS
AAAGTTGATGGTTGTTTCCA+TGG	0.433796	5.1:-1045180	None:intergenic
AAATATTGAACCTCACCATT+AGG	0.330180	5.1:-1045600	None:intergenic
AACACACCTTCACCAATCTT+TGG	0.314938	5.1:+1045354	MS.gene92305:CDS
AACCCTGGTCGTGAAGGAGT+TGG	0.600436	5.1:+1045657	MS.gene92305:CDS
AAGAATTCTATGTGATCACA+TGG	0.598132	5.1:+1045415	MS.gene92305:CDS
AAGATTGGTGAAGGTGTGTT+TGG	0.388416	5.1:-1045351	None:intergenic
AAGGAGTTGGTCAGAATTTC+AGG	0.217942	5.1:+1045670	MS.gene92305:CDS
AAGGTTAACCCTGGTCGTGA+AGG	0.571068	5.1:+1045651	MS.gene92305:CDS
AATATTGAACCTCACCATTA+GGG	0.389009	5.1:-1045599	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTGAACCTCACCATT+AGG	-	chr5.1:1045603-1045622	None:intergenic	30.0%
AAGAATTCTATGTGATCACA+TGG	+	chr5.1:1045415-1045434	MS.gene92305:CDS	30.0%
AATATTGAACCTCACCATTA+GGG	-	chr5.1:1045602-1045621	None:intergenic	30.0%
AGAATTCTATGTGATCACAT+GGG	+	chr5.1:1045416-1045435	MS.gene92305:CDS	30.0%
CCAATTGAAGTTAAGTTTAC+TGG	+	chr5.1:1045714-1045733	MS.gene92305:CDS	30.0%
CCAGTAAACTTAACTTCAAT+TGG	-	chr5.1:1045717-1045736	None:intergenic	30.0%
CAATATTTGCATCCTAAGGA+TGG	+	chr5.1:1045615-1045634	MS.gene92305:CDS	35.0%
CTAACCTTCTTAAGTTAGCA+AGG	+	chr5.1:1045502-1045521	MS.gene92305:CDS	35.0%
CTTGCTAACTTAAGAAGGTT+AGG	-	chr5.1:1045504-1045523	None:intergenic	35.0%
CTTTCCTTGCTAACTTAAGA+AGG	-	chr5.1:1045509-1045528	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	1045126	1045758	1045126	ID=MS.gene92305
chr5.1	mRNA	1045126	1045758	1045126	ID=MS.gene92305.t1;Parent=MS.gene92305
chr5.1	exon	1045126	1045758	1045126	ID=MS.gene92305.t1.exon1;Parent=MS.gene92305.t1
chr5.1	CDS	1045126	1045758	1045126	ID=cds.MS.gene92305.t1;Parent=MS.gene92305.t1

Gene Sequence

>MS.gene92305

ATGGCAATGGCAACTCAAGCCTCTCTCTTCACTCCACCTCTCTCAAGCCCTAAACCATGGAAACAACCATCAACTTTATCCTTCATCTCTCTCAAACCCATCAAGTTCACAACAAGAACAACAAAAATCTCAGCTGCAGATGACAAAACAGAAGCAGCAGCACCAGTTGCAACAAAAGAAGAAGCTCCTGCTGCACCAGTTGGTTTCACTCCACCTGAACTAGACCCAAACACACCTTCACCAATCTTTGGAGGAAGCACTGGTGGTTTGTTACGTAAGGCACAAGTTGAAGAATTCTATGTGATCACATGGGAGTCACCTAAGGAACAAATCTTTGAGATGCCAACTGGTGGTGCAGCCATAATGAGAGAAGGTCCTAACCTTCTTAAGTTAGCAAGGAAAGAACAGTGTTTGGCTTTAGGAAATAGATTAAGGTCTAAGTACAAGATTAAGTATCAGTTTTACAGGGTTTTCCCTAATGGTGAGGTTCAATATTTGCATCCTAAGGATGGTGTGTACCCTGAGAAGGTTAACCCTGGTCGTGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGAAAGAATGTTAGCCCAATTGAAGTTAAGTTTACTGGTAAGCAACCTTTTGATGTGTAA

Protein sequence

>MS.gene92305.t1

MAMATQASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTRTTKISAADDKTEAAAPVATKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQPFDV