AlfalfaGEDB | MS.gene08512

M. sativa cultivar XinJiangDaYe / MS.gene08512

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08512.t1	XP_013444537.1	93.8	96	6	0	1	96	56	151	8.00E-44	186

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08512.t1	Q8LCA1	68.6	102	26	2	1	96	54	155	8.4e-34	144.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08512.t1	I3SWC2	93.8	96	6	0	1	96	56	151	5.8e-44	186.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene08512	0.872513	3.00E-67	-1.69E-46
MS.gene049171	MS.gene08512	0.865041	7.87E-65	-1.69E-46
MS.gene049173	MS.gene08512	0.851764	7.18E-61	-1.69E-46
MS.gene049217	MS.gene08512	0.894977	1.48E-75	-1.69E-46
MS.gene049222	MS.gene08512	0.895097	1.32E-75	-1.69E-46
MS.gene049232	MS.gene08512	0.817435	3.30E-52	-1.69E-46
MS.gene049285	MS.gene08512	0.905119	6.01E-80	-1.69E-46
MS.gene049320	MS.gene08512	0.922071	1.58E-88	-1.69E-46
MS.gene049369	MS.gene08512	0.814682	1.36E-51	-1.69E-46
MS.gene04939	MS.gene08512	0.802304	5.98E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 19 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGCTCGTGATGTTA+TGG	0.420998	8.1:+76218861	MS.gene08512:CDS
AATAGGAATTGGTTACACTG+GGG	0.760636	8.1:+76219294	MS.gene08512:CDS
ACAAATTATGCATACCTTTC+TGG	0.079710	8.1:-76220212	None:intergenic
ATTTGATGATAAATATGCAG+TGG	0.570116	8.1:+76219072	MS.gene08512:CDS
CCTATTAACTCAAGAACTCC+AGG	0.507872	8.1:-76219277	None:intergenic
CCTGGAGTTCTTGAGTTAAT+AGG	0.246781	8.1:+76219277	MS.gene08512:CDS
GATAGACTTCCTTTGATTCC+TGG	0.345188	8.1:+76219259	MS.gene08512:CDS
GATGTTATGGTAATGGCAAC+AGG	0.459632	8.1:+76218874	MS.gene08512:CDS
GTTCTTGAGTTAATAGGAAT+TGG	0.346748	8.1:+76219283	MS.gene08512:CDS
TAAATATGCAGTGGGTTCAT+TGG	0.505381	8.1:+76219081	MS.gene08512:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAACCCTAGAAATTAC+TGG	-	chr8.1:76219888-76219907	None:intergenic	30.0%
AAGCACAATAGTATTTGACA+TGG	-	chr8.1:76219673-76219692	None:intergenic	30.0%
AATATCGGACTCTATCTATA+AGG	-	chr8.1:76219746-76219765	None:intergenic	30.0%
AGCACAATAGTATTTGACAT+GGG	-	chr8.1:76219672-76219691	None:intergenic	30.0%
ATCAAATGGCTTTCTTAAGA+TGG	-	chr8.1:76219924-76219943	None:intergenic	30.0%
ATGTCAAATACTATTGTGCT+TGG	+	chr8.1:76219672-76219691	MS.gene08512:intron	30.0%
CAATTACTTTCACTTGTAAC+AGG	+	chr8.1:76219231-76219250	MS.gene08512:intron	30.0%
GCATCAAGTGAAATAATGTT+GGG	-	chr8.1:76219564-76219583	None:intergenic	30.0%
GCTTTCTTAAGATGGTATTT+AGG	-	chr8.1:76219916-76219935	None:intergenic	30.0%
GTTCTTGAGTTAATAGGAAT+TGG	+	chr8.1:76219283-76219302	MS.gene08512:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	76218857	76220219	76218857	ID=MS.gene08512
chr8.1	mRNA	76218857	76220219	76218857	ID=MS.gene08512.t1;Parent=MS.gene08512
chr8.1	exon	76218857	76218960	76218857	ID=MS.gene08512.t1.exon1;Parent=MS.gene08512.t1
chr8.1	CDS	76218857	76218960	76218857	ID=cds.MS.gene08512.t1;Parent=MS.gene08512.t1
chr8.1	exon	76219064	76219150	76219064	ID=MS.gene08512.t1.exon2;Parent=MS.gene08512.t1
chr8.1	CDS	76219064	76219150	76219064	ID=cds.MS.gene08512.t1;Parent=MS.gene08512.t1
chr8.1	exon	76219253	76219315	76219253	ID=MS.gene08512.t1.exon3;Parent=MS.gene08512.t1
chr8.1	CDS	76219253	76219315	76219253	ID=cds.MS.gene08512.t1;Parent=MS.gene08512.t1
chr8.1	exon	76220182	76220219	76220182	ID=MS.gene08512.t1.exon4;Parent=MS.gene08512.t1
chr8.1	CDS	76220182	76220219	76220182	ID=cds.MS.gene08512.t1;Parent=MS.gene08512.t1

Gene Sequence

>MS.gene08512

ATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGACTCAACTGAGCTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTGTATGATACATAGGTTGTTAGAAATTGTAATGGAGTTTCTTTTTCCCTTCTTAATGTTTATTATTGACCTAGAATTATGTTATTTATTTTGTTGGCATCATAGTGGGACAAATTTGATGATAAATATGCAGTGGGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTCAGCTGGTTTTATCTCGGTATTAAGTTATTTAAATGCTAATTTTATTTGCATTATTTGATTATCAATTTATTAGATACAGATGATAAATGTCATAAGCAATTACTTTCACTTGTAACAGGCAATTGATAGACTTCCTTTGATTCCTGGAGTTCTTGAGTTAATAGGAATTGGTTACACTGGGGTAAGTCAAATAAATACACTTAGATTTAAATATATGACTGGTCCCTGCAAATATCGCGTATTTGATTTTTGGTCCTTGTATTTTTTTTTTGAAATACATCTTTGCAAGAAAAATTGTTTTTTAAAATGATCCCCGGGTCCATTTAAGCTGATAGGTGGGAGTCTGATGCTTACGTTACACATGCTAAAAAAAATAAAATCTGAAACTTAATTTAAAAAAAAAATATAAATAGATTTTTTCATATGCCCAACATTATTTCACTTGATGCATTGATATACATGGTTGATGGTCAGGCCTTATACACTATTCAATGCAGGACTTGGATTTTTGTTTTACACCCCCCCCCCCCCCCCCCCATGTCAAATACTATTGTGCTTGGTGCATTGACATATAGATAGGGGATGGCCTTATAGAAGATATGGGATGGCCTTATAGATAGAGTCCGATATTGTAATACATTTTTATATTTAGACATAACTCATCCTTACAAATTGATAAGATTAGAGGTGTCACTCTTTATAAACTCATCTCAAGCATTATATTTATTCAATGCGACACTTAGTTTTTTTCCAGTAATTTCTAGGGTTTTCTTTTAATCCTAAATACCATCTTAAGAAAGCCATTTGATTTTATGACAAAATACATATATACTAGCAAAAACAATATATATATATATATATATGTATATATATCTATATATATATATGTATATATATATCTATATATATGTATATATATATATATATATATATATATATATATGTGTATATATATATATATATGTATATATATATATGAGGTATTATTCATCTTTGGATTCAACTATAAGAAAACCTAGTATTCATCTTCTATATTTCACCTTGCAGTGGTTTGCATACAAGAACGTAGTTTTCAAGCCAGAAAG

Protein sequence

>MS.gene08512.t1

IERLLVMLWUWQQEMHQQKLTQLSYLSLLRIFKKLGTNLMINMQWVHWLULVYLHYGAQLVLSRQLIDFLUFLEFLSUUELVTLGGLHTRTUFSSQK