AlfalfaGEDB | MS.gene99936

M. sativa cultivar XinJiangDaYe / MS.gene99936

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00004.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99936.t1	XP_013465635.1	95.9	365	1	1	53	403	54	418	1.20E-197	699.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99936.t1	P93431	49.2	303	133	7	111	398	112	408	2.5e-79	297.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99936.t1	A0A072VDJ3	95.9	365	1	1	53	403	54	418	8.5e-198	699.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene99936	0.867701	1.13E-65	-1.69E-46
MS.gene049171	MS.gene99936	0.871509	6.47E-67	-1.69E-46
MS.gene049173	MS.gene99936	0.868579	5.88E-66	-1.69E-46
MS.gene049217	MS.gene99936	0.882541	9.55E-71	-1.69E-46
MS.gene049222	MS.gene99936	0.894954	1.52E-75	-1.69E-46
MS.gene049232	MS.gene99936	0.817903	2.59E-52	-1.69E-46
MS.gene049285	MS.gene99936	0.89584	6.54E-76	-1.69E-46
MS.gene049320	MS.gene99936	0.893089	8.70E-75	-1.69E-46
MS.gene049351	MS.gene99936	0.807771	4.30E-50	-1.69E-46
MS.gene049356	MS.gene99936	0.831964	1.24E-55	-1.69E-46

Showing 1 to 10 of 280 entries

Previous1 2 3 4 5…28Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99936.t1	MTR_2g105480	92.162	421	12	4	1	403	1	418	0.0	781
MS.gene99936.t1	MTR_2g105480	90.704	355	12	4	1	337	1	352	0.0	647
MS.gene99936.t1	MTR_2g105480	89.037	301	12	4	1	283	1	298	0.0	539
MS.gene99936.t1	MTR_4g021210	51.027	292	122	7	122	398	134	419	2.90e-98	301
MS.gene99936.t1	MTR_3g068030	46.821	346	156	10	74	399	68	405	3.40e-98	299
MS.gene99936.t1	MTR_3g068030	46.821	346	156	10	74	399	82	419	3.51e-98	300
MS.gene99936.t1	MTR_5g080450	45.954	346	159	10	74	399	82	419	6.65e-96	295

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99936.t1	AT1G73110	74.084	382	85	1	36	403	51	432	0.0	599
MS.gene99936.t1	AT1G73110	74.528	318	67	1	100	403	18	335	8.95e-180	503
MS.gene99936.t1	AT2G39730	44.928	345	162	10	74	398	81	417	3.81e-93	287
MS.gene99936.t1	AT2G39730	44.928	345	162	10	74	398	81	417	4.76e-93	287
MS.gene99936.t1	AT2G39730	44.928	345	162	10	74	398	81	417	1.62e-92	286

Showing 1 to 5 of 5 entries

Previous1Next

Find 68 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACATCGTCAATGATGC+CGG	0.544929	2.1:-373627	None:intergenic
AACCTGTTATTATGTCTGCT+GGG	0.507623	2.1:+375451	MS.gene99936:CDS
AATCCTACAAGAGTTAGTAT+TGG	0.579350	2.1:+376109	MS.gene99936:CDS
AATGACATTGATGCTGGTCT+TGG	0.482478	2.1:+375828	MS.gene99936:CDS
AATGGAAACTAAACTTTCGA+AGG	0.571792	2.1:+380128	MS.gene99936:CDS
ACCTCTGGAGGAATAAATAC+AGG	0.480480	2.1:-378778	None:intergenic
ACCTGTTATTATGTCTGCTG+GGG	0.629895	2.1:+375452	MS.gene99936:CDS
ACGATAATCAAAGACAATGT+CGG	0.579999	2.1:-373675	None:intergenic
AGAATTCCAATCATTGTAAC+AGG	0.372987	2.1:+376163	MS.gene99936:CDS
AGAGACTATCTCTACAGACT+TGG	0.603878	2.1:+373563	MS.gene99936:CDS

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAAAAGGGCAACC+CGG	-	chr2.1:378617-378636	None:intergenic	30.0%
AAAAAGTCGTAACTTGATTC+TGG	-	chr2.1:375551-375570	None:intergenic	30.0%
AAAATACTATAATACCCCTG+AGG	+	chr2.1:373952-373971	MS.gene99936:intron	30.0%
AATCCTACAAGAGTTAGTAT+TGG	+	chr2.1:376109-376128	MS.gene99936:CDS	30.0%
AATGGAAACTAAACTTTCGA+AGG	+	chr2.1:380128-380147	MS.gene99936:CDS	30.0%
ACAACTTTGTCCATAAAAAG+AGG	-	chr2.1:373752-373771	None:intergenic	30.0%
ACCCTAATCAAAACAAAAAG+GGG	+	chr2.1:374343-374362	MS.gene99936:intron	30.0%
ACGATAATCAAAGACAATGT+CGG	-	chr2.1:373678-373697	None:intergenic	30.0%
AGAAAAGATGGAATGAAAGT+GGG	-	chr2.1:374014-374033	None:intergenic	30.0%
AGAATGAGAGTGATAAAAGA+AGG	-	chr2.1:376849-376868	None:intergenic	30.0%

Showing 1 to 10 of 451 entries

Previous1 2 3 4 5…46Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	373377	380176	373377	ID=MS.gene99936
chr2.1	mRNA	373377	380176	373377	ID=MS.gene99936.t1;Parent=MS.gene99936
chr2.1	exon	373377	373857	373377	ID=MS.gene99936.t1.exon1;Parent=MS.gene99936.t1
chr2.1	CDS	373377	373857	373377	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1
chr2.1	exon	375448	375557	375448	ID=MS.gene99936.t1.exon2;Parent=MS.gene99936.t1
chr2.1	CDS	375448	375557	375448	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1
chr2.1	exon	375804	375858	375804	ID=MS.gene99936.t1.exon3;Parent=MS.gene99936.t1
chr2.1	CDS	375804	375858	375804	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1
chr2.1	exon	376047	376248	376047	ID=MS.gene99936.t1.exon4;Parent=MS.gene99936.t1
chr2.1	CDS	376047	376248	376047	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1
chr2.1	exon	376540	376646	376540	ID=MS.gene99936.t1.exon5;Parent=MS.gene99936.t1
chr2.1	CDS	376540	376646	376540	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1
chr2.1	exon	377270	377325	377270	ID=MS.gene99936.t1.exon6;Parent=MS.gene99936.t1
chr2.1	CDS	377270	377325	377270	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1
chr2.1	exon	378706	378798	378706	ID=MS.gene99936.t1.exon7;Parent=MS.gene99936.t1
chr2.1	CDS	378706	378798	378706	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1
chr2.1	exon	380069	380176	380069	ID=MS.gene99936.t1.exon8;Parent=MS.gene99936.t1
chr2.1	CDS	380069	380176	380069	ID=cds.MS.gene99936.t1;Parent=MS.gene99936.t1

Gene Sequence

>MS.gene99936

ATGGCGAAGCTGCTATTACTTCTACGACCGCCAACTTCTTCCCATTCCAATTCATTCTCATTCAAAAAACCACATCATTCGCAATTCTCTAGCTGTGTTCGCTGCTGCAGTACTAGTGATGATGATGAAAAGAACAAGAAGAAGTTATCAGAGCAATCTTCTTGGGAAACTAAGGATTCTGAAGGAAGAGACTATCTCTACAGACTTGGCGCTGAAGCTGATAACATGAACATCGCCGTTGGTCAACGTGCCGGCATCATTGACGATGTCTTTGCCGGCAATTTTCTCGGCAGAGACTCCGACATTGTCTTTGATTATCGTCAGAAAGTCACTAGATCATTTCAATACCTTCAAGGAGATTATTACATTGCTCCTCTTTTTATGGACAAAGTTGTTACTCACATTACCAAAAACTACCTTTCTCATCTCCTCAATGCTAAAGTTCCTTTGATTCTTGGTATTTGGGGTGGTAAAGGCCAAGGTAAAACTTTTCAAACTGAACTTATCTTTCGTGCCATCAGTGGCGGAGCTACATGTGGACTGGGGCAGGCCATGGCCTACCCATTAATTGTGTGAAAATACTATAATACCCCTGAGGTAATTTTAATATTACCACCATGCCGCACCCAACTATCCCACTTTCATTCCATCTTTTCTCCAGAACCAGAACGTGAAACAAACAGGGAAAGAAAAGAATCGTTTTCTCTTCTCCCTTGGAAGCGCGACATCACCCACCGCCACTGCAATCCCGCAATCGGCGAACTTACCAACCGGCATCTCCTCTCTCTGCATCAATCTCCAGAAACAAAGTCAATTCCCCATTGGTCTCAATCTCTCTACAAACCCTAAAAATGTAAGTGTATTCTGAATCTATTCTTCATTTGTAATTGTTAGTAATGATAGTGCTTCAATTTCTTTTTGTTTGTTAATGAATTTGATTTGGTTTTCAATTTCAATTTTCTCATAACCCTAATCAAAACAAAAAGGGGGTTTTTTATTTTTGATTTGAAATATGTTTGTTCTTTATTAGTGATCACGCATTGGTTACAAATGGAACAGGTTCCAGAACTTTTTACCTATATTGAGCAGATAAATCTTCAAATTGAGGATTTGATAACAGGGAAATATTTTGAACAGTTTTTCTGTCTACTAATGTTTATACAGGTTAAATATTCATGAAATGAATTGGAGATAATAACATAGTGTGACATTGACTATCTTGTAAAAGTTTCATCATTGGAACTAAATATTGCATACTAAGGATTCATGTAATCCGTACAAAATTCTAATCTAAAATAAATTAACTTATTAAACTGGTTTTTCCATTAGAATGATTTTTAGAATGCTTACCACTCTTTGTATAGTTAATAAGCTGCACAGTAACTTCTGTTTGATTGTCAATAAGCTTACCACTCTTTGTATAGTTAATAAGCTGCACAGTAACTTCTGTTTGATTGATCAATTTGAATTACAATGGAACATATTTATACATATAAGTCCATTTGCTTATTGTATCATTTGCTAAAATTTTGTGCAAATCTTTCTCACTGGCATTGCTAATGAAAATATACTTATATGTTGTGTAGGAAGAACAAGATGAAGAGTCAAAAAATCTATTCATTTTACAAGAGGAAGGCCAATGATATTGCAACTAGACAAACCAAAGATTACTTCTTGATTGATAGATTGCTGCGCCTTGTTATGACTCTTCCGGTTTCTACAGCCACAACTGAAAGATCTTTTTCGGCAATGAAAATTATCAAGTCTAAGTTGAGAAACAAGATGGGACATGGGTTTCTTGCAAACAGCATGACAGTTTATATTGAAAGGGAGATTAGTGCATGCATTAGTTCCGAGTCAATTATTGATGATTTCAAGTCACTCGGGACACGTAAAGCATCACTATGAGGTATTTGTCATGTAGTTTGTTTTTTTGATAAGTTTAATATTTTTGATGAACGAAACTGACATGGGTCGTATTTTATATTATATGATTTATATATTTTAATTTATTTTGATTGCGGCCATCCCATTATTTTTTGCCTGGCTCCGCCACTGCGTGCCATGGGAGTTGAACCTGTTATTATGTCTGCTGGGGAACTTGAATCTGAAAATGCTGGTGAGCCTGGAAGATTGATTCGTGAGCGCTACAGAACCGCTTCTAGAGTCGTCCAGAATCAAGTTACGACTTTTTTACCCTTTTAAGTATGTCCAAATTCATGATTTATCTTGTTGATTTTACATCCACCTAGCTATGTTGTATGCACAAAATAATGCTAAAGTAGTCTACATTTGCTTATATTGATGGTTGATGTATCCAATGCTCCCATTATACTGAGTCTAGAGCAATATTTATTAGTCGACCAATGATTCCGCATTTCCTTAATTTGCTAAAGTAGTCTGTCTAAATTTGCTTTCTTGATACAGGGAAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGTCTTGGTCGATTTGGTAAGCTAACATCTGATTAGACTGAGAGAAAAAAAAAAATGATTATTTGTAAATTTTATTCCATATCCCCCTTTTCGTTCATTAGACTATAGTTTGTGTGTGCGCGCGTTGCATTGCGTCTCCTAGTGTTTCAGTTACTTGGTCAGCGGTCAACCCTTACTGAACATACTTTTCCTGTTTTAATATAGGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTATGTGACAATCCTACAAGAGTTAGTATTGGTCAAGATTGGCGAGAAGCAGATGTCACAAACAGAATTCCAATCATTGTAACAGGAAATGATCTTTCAACTATTTATGCTCCATTGATACGTGATGGAAGGATGGATAAATTTTACTGGTAAATTATCATTTTCTTTTTTTATTCTAGGATTACTACTTGCCATTCATGTATTTTAATTATGGTAGTTTTTGTCAGGTGCATTGTTGGATAAAATGTTTTAGGTGAATTTTTGCATAGTATTGTGGAATGAAATTTCATGATCGATGTGGTTGATAAAGCTATGTTTAGCATGATTTACCTCATCTATCACATTGCTAATGCAATGACTCTGAAGTATCTGATTTCATGAAATGAAACTAGGTAAGCTATGTCACTCTTCCCTAAAATGTTTTCGTAAATGTGGCACAGGCAGCCTAACCAGGAAGATATACTGAATATTGTTCAAAGAATGTATGAGAAAGATGGCATATCCAGGGATGAAGTTGAAAAAGTTGTGAAAACTTTTCCTAATCAAGGTACTTATTCGTATGCCATGTTGGTTCAGAAAAGTTCTATTTATCTGTTATGCTGTTAAAACAGTAGTAAGAAGGTATATGTTATTATTCGATATAAATTAAGTAGTACGATAGAAAATCTTGCAGTTGTTTATTTATATATCATGCTGCCTATTTTATTCTATGCTTATTATTGTGACTGATATTTCCTTTAGAGTGCCCTTCTTTTATCACTCTCATTCTTTATCTTAACTAACTTATTTTCCTCGTTTGCCAAATTTGTACTGAGATATCAGGTCTGTTCTCATTTAGGACCCATAGTTTTGATTTTATTTTAATCTTGTTTAATCAATTAAATATTTTTTTTGTAAACCAGAAACAATTTGTTTCTTGTTTGTACAGAAAAAGCACTTTTCTTTTGAAGCAGTTTCAATTATTTGTTTTTCCTCAGAAGCGACGCAAAATAAGCAGAATTTGATCCATGTAGCCGACCCCACCTGGGGATAAGACTTGGTTGTTGTTGACTCAATAAGCAGAAATCTGTTTCTTTTTCATATTTTTTTTTTAAACTTTAAATAAACAATCTTAAAAGTTTGTAATATGAATTTCAAAACTTAAACACACTCTTATTTTGATACCGGCAGCATTGGACTTTTATGGAGCTCTAAGATCGCGTACATATGACAGATCTATTTTAAAGGTATGCAGATACCTTAGTTTACATTAATATATCTTACTGATCTAGCTGACTTTCCATTTCCATATGTAAAAATACTAATTTTCAATTACAGTTGCTGTTTATGTTTGGTGAAATATTAATGGTAGTTTTTGATGAACCAAGACAATACCAAAAGAAAAAAGGGAACAAAAGATGTTGTGACAATCTCTTATTATGTGACTCTTGAATGTCGCACATTTTACGCTATAGAAATTATTCATCATCCATCGCCTGAGATACTTTGTAGGGTGTAGGGCTGGAAGAAAAGCCTCTTTCAAAAGAATCTCCTGTCAGTTACTTATTATGTAGTTTAAATGCTGTTGGAATTACTCACACAGACAAATTAATACCACTCCTAGTCCTGCCCTTTTGTAATGCTTTTGAGTGAACCATTTTATTTTTGCCCAGAAGGCGTTGTGAAGTGATTGTTGAGAAAAAGGATCTAGGGTATGAACCCTCAACCTGTATAAATGCAAGCACCTTATTCTAGTATGTTATAGAAAAAAAATTTGATCTCTGTGCATATATGTAGTACTAAAGTACCTATCAACTATCCAGTATGCACAAAGAAGTTGGCAGGTTTAGTGCCAATGAACTAGTTCAAGTTGCTTAAATTACCCCGATGCTGCCCAGTGTTTGATGGTGGCTTTCTCTCTTCAAGTAGACATTTGACATTTTGATCCATGGTTTTTCAAAAGGGTAACAACCGAAAAGATTCCTTGTGCTAGAACAGTTTATATTATCCAATACAGCCTTCTCATTCTAGAAAAGGCTTGAAGCATGATAATGCATATGCCCATTGTAACTTGTAATGAAATTTAATTGTGAAAATTTGAAGCATAATAAATTGGCGTTCTCGACAATTGACCATAAAAGGCTCTAATATCACATAAATATAAATGATCTGAAGAGAGAACCCTGAATGCAGTGGCGTATCCAGGAGGCTGAATGTGTAAATTTCTATCACCTTGCATTTTAATATTTATTTATTTATAATAACCAGGGGAATGTGTTTCCCAGTAGTAATGTATGCAACATAACTAGCAGTAAGTTTTTCGACAATGACAGTTGACAACTGCCATTATATTTCTGCCATTATATTGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGGAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAAATAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTTTAGTGCACCGGGTTGCCCTTTTTTTTTTTTTTTATCCATATTTAATTTTTCCGCACAAAGATTGCTGCTAATGACATACAAACTTGTGGTGGATCTTAGTGGGTTGATGATATTGGAGGTGCTGAAAGTTTTGCATCCAAATTTCTCAAAAGAAGAAAGGACCAGAATCTTCCTGTATTTATTCCTCCAGAGGTAAATAGTCATCCTTTTTCTCCTGTTCTGTTCTGTCCTGTTGTGTGGTAGGCTAACTGATGGTAATTGGCTGTTTCCTGTCAACCAAATTAATATTGATGAAATATTGATTCAGCTCATATATAAGTTGAACATAGTTTATAGACGAACATAAAATTATAAGATCTAAATATAGCCAAAATTATTAGGGTCATGGTCTTAACATTGTAGCGTTGTTCAAATCGACTTGACTGATTTGATTGTATTTTAAAAAAGGAAAATGCTAGATATCAAGAATGGATTTTCTTGATGGATTCAAGAATGACATGGCAGAATAATCACCCTTAGATTTCAGTCTTATTTATCAACGTTTCATAAAAAAAAATACATAATACCCACCGAGCAATGCTATATATCAAGAAAGATTTTATCAAGAAATTGTCCCGAAATTAATGTTAGCCAATAAAATCTCAGCCTGGCCGGAAATCATGGGGTGGTGGGTGTTATGTATTTTTTTTTATGAAACTTTAATAAATAAGATTGAAATCTAAGGGTGATTATTCTGTCATGTCATTCTTGAATTCATCAAGAAAATTCATTCTTGATATCTAGCATTTTCCTTTTCCGTACCCACCACCCCATGATTTTCAGCCAGGCTGAGATTTTATTGGCTAACATTAATTTCGGAACAATTTCTTGATAAAATTGTTATGAATAGTTATTGATATTATCATGCAAAGGTCTACGTTTGTAATTTTCCATTGGATAGATAGAAGATGAACAGTCTAGTTCTAAATTGAATTCGTCAAGATGATGTCTTAATATGTGATTTTCAACATCATAGTACGACTTGATTACAGATATTGAAACTCAAAATTTGAAGGACATTAGCTTATCTTTAAGAATTTCCACCCATGATATTTTACCTTGTGATGTTTTTATCGTTATCTCTCTTGCACTTGGAAAGAGATCTTTCGTTATAATTTCTTTCCGACTCTCATGCCAATTCTTTTGCTGGCCAACATTTGGGTATCCTGTCTGCTATGTTAGACACATAAAGTTCTTAACTCATACTTCTGATATTTGAACACTTCATTCATGAGAAATTAGTTGCAAATGTTTTGGGGGAGGAAACATTCATAGTTATATGTAATAATAGAACTTCTGCTTTTCATCTTTCTTTCTTTCCTTCTTTTCCTTGTCTTTAAAGAGTAACATTTCTATTATTGTTGATTTGCTTTACTGAAAAAAATACAAATGAAATTAACTGCTTTTCTATTTGGTTGGATAGCAAACGATCGATGCTTTACTTGAGTCAGGTTATTCTCTGCTCAAAGAACAACAGTTGATAATGGAAACTAAACTTTCGAAGGAATACATGAAGAACATTGAAGACTAA

Protein sequence

>MS.gene99936.t1

MAKLLLLLRPPTSSHSNSFSFKKPHHSQFSSCVRCCSTSDDDEKNKKKLSEQSSWETKDSEGRDYLYRLGAEADNMNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQVEPVIMSAGELESENAGEPGRLIRERYRTASRVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYMKNIED