AlfalfaGEDB | MS.gene90853

M. sativa cultivar XinJiangDaYe / MS.gene90853

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009523 GO:0009654 GO:0009987 GO:0015979 GO:0019898 GO:0032991 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0098796 GO:0110165 GO:1902494 GO:1990204
PFAM: PF01789.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90853.t1	XP_013470447.1	99.6	234	1	0	1	234	1	234	5.00E-124	453.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90853.t1	O80634	59.2	238	93	2	1	234	1	238	2.5e-71	270.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90853.t1	A0A072W2L8	99.6	234	1	0	1	234	1	234	3.6e-124	453.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene90853	0.874828	4.98E-68	-1.69E-46
MS.gene049171	MS.gene90853	0.880692	4.45E-70	-1.69E-46
MS.gene049173	MS.gene90853	0.854243	1.40E-61	-1.69E-46
MS.gene049217	MS.gene90853	0.893921	4.00E-75	-1.69E-46
MS.gene049222	MS.gene90853	0.900642	5.97E-78	-1.69E-46
MS.gene049232	MS.gene90853	0.814747	1.32E-51	-1.69E-46
MS.gene049285	MS.gene90853	0.900469	7.10E-78	-1.69E-46
MS.gene049320	MS.gene90853	0.909878	3.50E-82	-1.69E-46
MS.gene049351	MS.gene90853	0.801491	8.78E-49	-1.69E-46
MS.gene049369	MS.gene90853	0.803794	2.94E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90853.t1	MTR_1g115410	99.573	234	1	0	1	234	1	234	1.22e-177	487
MS.gene90853.t1	MTR_7g023290	38.220	191	117	1	45	234	50	240	8.76e-46	152
MS.gene90853.t1	MTR_7g023290	38.743	191	113	2	45	234	50	237	8.37e-45	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90853.t1	AT2G39470	60.084	238	91	2	1	234	1	238	3.61e-97	283
MS.gene90853.t1	AT2G39470	60.593	236	85	3	1	234	1	230	2.66e-95	278
MS.gene90853.t1	AT2G39470	58.824	170	62	3	1	168	1	164	1.38e-60	188
MS.gene90853.t1	AT3G55330	37.569	181	111	2	53	231	48	228	2.41e-42	144

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Find 51 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATGAACACACCTTAT+GGG	0.424094	1.4:-87568341	None:intergenic
AACAATATATGACATGCAAG+AGG	0.615986	1.4:+87569556	MS.gene90853:CDS
AAGAAAGATATCAGAGATTT+GGG	0.360869	1.4:+87569390	MS.gene90853:CDS
AAGATACTACACATTAATTG+TGG	0.525487	1.4:+87570238	MS.gene90853:CDS
AAGTGGTAGCAGACTCCTTT+AGG	0.329582	1.4:+87570303	MS.gene90853:CDS
ACAAAAGATCGGTATCTGTC+TGG	0.502898	1.4:-87568874	None:intergenic
ACACACCTTATGGGATAAGT+AGG	0.562591	1.4:-87568332	None:intergenic
ACGACACTTGCCATAGGAAA+TGG	0.413180	1.4:+87569764	MS.gene90853:CDS
AGACCACTGCTGTTGGGTAT+AGG	0.414717	1.4:+87568711	MS.gene90853:CDS
AGATACTACACATTAATTGT+GGG	0.575783	1.4:+87570239	MS.gene90853:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCATGAACACACCTTA+TGG	-	chr1.4:87568345-87568364	None:intergenic	30.0%
AAATCATGAACACACCTTAT+GGG	-	chr1.4:87568344-87568363	None:intergenic	30.0%
AACAATATATGACATGCAAG+AGG	+	chr1.4:87569556-87569575	MS.gene90853:CDS	30.0%
AGATTACTTACCATTTCCTA+TGG	-	chr1.4:87569777-87569796	None:intergenic	30.0%
CACATTCAAATCATTTGCTT+CGG	+	chr1.4:87568451-87568470	MS.gene90853:CDS	30.0%
GAAGAAAGATATCAGAGATT+TGG	+	chr1.4:87569389-87569408	MS.gene90853:CDS	30.0%
GACAAACTTGTAGAAAATTG+TGG	-	chr1.4:87569257-87569276	None:intergenic	30.0%
GATTGTTTGTCAATATGCAT+TGG	-	chr1.4:87569648-87569667	None:intergenic	30.0%
TCTTGCATGTCATATATTGT+TGG	-	chr1.4:87569557-87569576	None:intergenic	30.0%
TGATAAAGGTAGATTACTTC+TGG	-	chr1.4:87568639-87568658	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	87568295	87570340	87568295	ID=MS.gene90853
chr1.4	mRNA	87568295	87570340	87568295	ID=MS.gene90853.t1;Parent=MS.gene90853
chr1.4	exon	87568295	87568348	87568295	ID=MS.gene90853.t1.exon1;Parent=MS.gene90853.t1
chr1.4	CDS	87568295	87568348	87568295	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1
chr1.4	exon	87568441	87568537	87568441	ID=MS.gene90853.t1.exon2;Parent=MS.gene90853.t1
chr1.4	CDS	87568441	87568537	87568441	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1
chr1.4	exon	87568697	87568780	87568697	ID=MS.gene90853.t1.exon3;Parent=MS.gene90853.t1
chr1.4	CDS	87568697	87568780	87568697	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1
chr1.4	exon	87568869	87568942	87568869	ID=MS.gene90853.t1.exon4;Parent=MS.gene90853.t1
chr1.4	CDS	87568869	87568942	87568869	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1
chr1.4	exon	87569303	87569425	87569303	ID=MS.gene90853.t1.exon5;Parent=MS.gene90853.t1
chr1.4	CDS	87569303	87569425	87569303	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1
chr1.4	exon	87569506	87569577	87569506	ID=MS.gene90853.t1.exon6;Parent=MS.gene90853.t1
chr1.4	CDS	87569506	87569577	87569506	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1
chr1.4	exon	87569689	87569785	87569689	ID=MS.gene90853.t1.exon7;Parent=MS.gene90853.t1
chr1.4	CDS	87569689	87569785	87569689	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1
chr1.4	exon	87570237	87570340	87570237	ID=MS.gene90853.t1.exon8;Parent=MS.gene90853.t1
chr1.4	CDS	87570237	87570340	87570237	ID=cds.MS.gene90853.t1;Parent=MS.gene90853.t1

Gene Sequence

>MS.gene90853

ATGGTAGTTTCTTCTTGCTCTTTAACCTGGACTTCATCCTACTTATCCCATAAGGTGTGTTCATGATTTTCTCTTCTTCTTCATTGCATTCACACTATGTTCTTTATACTTAAACAGCTCATGTACTTAACTGTGAACTGTTTCAGCTAAACTTGCCACATTCAAATCATTTGCTTCGGAATACTACAACTTCATCTTCTAACAATGTCTCTTGTGCAATGGAAACAACTTCCAGTACAGAAAGTAAGAGCCTAAAGTGTGGTTAAAATGACTATTGTCAAGTTTACATTGACTTTACAATGAGCATGTCAGTGTTTGTGCTAATCAAGAATCAACACTTACCAGAAGTAATCTACCTTTATCAAAGCTTTGATCTGAGTTTTCTTTTTTAATTATTATTAGGACACTGCCAGAGAAGACCACTGCTGTTGGGTATAGGAGCATTGACAGCAAATTTGTTACCAGCAAACTCACTCTTAGCTGAAGGTATTCATAATAACATCTTTGTTTGGATATGTAAAGAGGAGTCACAATCTTCTGAAATTTTGAAATTCAATTAGTCCTTATTTTGTAGAAATACCAGACAGATACCGATCTTTTGTCGACTATGAAGATGGATATTCTTACATTTATCCCTCAGATTGGAAGGTAAAATTCATCATACTGATTCACAAGATGGTATTCCCTTGTTTTCATATTAACTATCACATTTGAAATATTTGTCCACCTCATTATCAGTCTTTTTAAAAAATATCAATGAAGCATTGACTACGTTTTTTCACAAATATACATTTATTTATTGTATCTCAACTTACTTAACTATTTGCGTAACTATATTAATAAGGGTACTTCAGTATATTACGTTGATTTTATCACACGAATTAGTACACACAATGGTCTTTTTAAGAGTGTAATGTTGATCAAAACTTACGATAAGACAGAGGAATTAGTTTCAACAGCCACAATTTTCTACAAGTTTGTCACTTGTCTGAGTGATCTTTTCCCCAGGAATTTGACTTCAGGGCACACGATTCTGCATTCAAAGACAGATATTTACAGTTACAAAATGTAAGGGTGAGATTCATACCAACTGAGAAGAAAGATATCAGAGATTTGGGTCCAATGGAAGAGGTGATTATGATTTAGATTCTGTCTTAATGTATGGAGTCTAATTTATAGTTATATACTTAACCAGTTTGTGTCTTAATCAGGTTATTACTGATTTGGTGAAACATAGATATGCTGCCCCAAACCAAAGACCAACAATATATGACATGCAAGAGGTGTTTCTTCTCATTTTATTTCTTCTCCAATTTGTTTTTTCCAAAAGAATATCTTAGGTTTTGATGGCCAATGCATATTGACAAACAATCATTTCTGAATTCTGAATGCAGCGGACGATAGATGGAAAACATTATTATACAATGGAATATGTACTTACATCACGAAATTACGCTAGTGCCTCCTTTACGACACTTGCCATAGGAAATGGTAAGTAATCTACCATCTCAAATCTCAGTGTGATATCCAACAAATATTCTCTCAAAGAAAAGCTAACTCAATATATACTTCTCTATCCTGTTAGATAATACAACAACTATCCTGTTAGATAATACAACAAGAATCTTCATGTAGAAAAATGATTATAAGTGACACAGGTAGAAAATTAACAAAGAATGTGCAACCCAGTAGAGAGACAACATTGAGAAGACTAATTATTCAAATGAAGCCAATTTCTTCGAAATTACGCGACTTCAGTGTCATAAAAACAGATTATACTGTTAACATACAGAAGTTCAACTGCAGGAGTTTTCAATGCAATCAAAGGCTCAGTATAATATAATAATGCTGGATTTCAAATAAAAATTATAATAAAATATACAATGGCATGAACTCATGGTCCTAACTCCTTATGTAAGCTAATAACATTCACTTTGTACAGGAAGATACTACACATTAATTGTGGGAGCCAATGAAAGACGATGGAAAAAAGTACGAGATCAGCTTAAAGTGGTAGCAGACTCCTTTAGGCTCCTTGACATCTGA

Protein sequence

>MS.gene90853.t1

MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNVSCAMETTSSTERHCQRRPLLLGIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYLQLQNVRVRFIPTEKKDIRDLGPMEEVITDLVKHRYAAPNQRPTIYDMQERTIDGKHYYTMEYVLTSRNYASASFTTLAIGNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI