AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1401300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401300 MtrunA17_Chr4g0072291 95.753 518 12 3 1 514 1 512 0.0 1006
Msa1401300 MtrunA17_Chr2g0328971 80.465 215 41 1 148 361 156 370 3.94e-125 375
Msa1401300 MtrunA17_Chr4g0032631 77.350 234 47 3 149 376 153 386 9.14e-125 375
Msa1401300 MtrunA17_Chr7g0249621 88.325 197 19 2 149 341 249 445 6.88e-124 378
Msa1401300 MtrunA17_Chr8g0343851 64.605 291 87 4 142 427 231 510 5.42e-121 367
Msa1401300 MtrunA17_Chr1g0152161 63.296 267 86 2 91 357 256 510 9.02e-116 356
Msa1401300 MtrunA17_Chr3g0135161 57.516 306 108 5 91 395 254 538 6.01e-114 351
Msa1401300 MtrunA17_Chr4g0054351 67.490 243 75 2 143 382 294 535 1.59e-112 347
Msa1401300 MtrunA17_Chr5g0412151 84.264 197 28 1 148 341 213 409 3.00e-111 340
Msa1401300 MtrunA17_Chr5g0400871 73.892 203 50 1 155 354 245 447 1.67e-107 331
Msa1401300 MtrunA17_Chr4g0073521 72.892 166 45 0 158 323 46 211 1.02e-88 276
Msa1401300 MtrunA17_Chr7g0216601 63.298 188 66 1 139 323 45 232 3.38e-80 255
Msa1401300 MtrunA17_Chr6g0452911 52.632 247 77 5 163 399 65 281 3.08e-79 253
Msa1401300 MtrunA17_Chr8g0367311 59.048 210 76 4 196 402 22 224 1.12e-78 246
Msa1401300 MtrunA17_Chr8g0355191 68.072 166 53 0 158 323 54 219 2.83e-78 251
Msa1401300 MtrunA17_Chr4g0002011 70.414 169 47 1 158 323 35 203 8.77e-77 244
Msa1401300 MtrunA17_Chr8g0355181 66.867 166 55 0 158 323 55 220 4.62e-73 236
Msa1401300 MtrunA17_Chr8g0362541 62.245 196 60 1 142 323 52 247 1.37e-72 236
Msa1401300 MtrunA17_Chr2g0305821 67.857 112 36 0 158 269 46 157 6.52e-44 152
Msa1401300 MtrunA17_Chr7g0257361 61.538 130 42 2 157 283 55 179 4.24e-42 155
Msa1401300 MtrunA17_Chr4g0053181 49.239 197 84 5 163 356 177 360 1.60e-40 153
Msa1401300 MtrunA17_Chr7g0263581 47.396 192 92 4 134 324 110 293 3.47e-40 151
Msa1401300 MtrunA17_Chr5g0401891 53.086 162 68 3 163 324 153 306 8.25e-40 150
Msa1401300 MtrunA17_Chr4g0030191 49.091 165 70 4 163 324 132 285 3.38e-37 143
Msa1401300 MtrunA17_Chr2g0325911 45.556 180 75 4 145 324 117 273 3.42e-32 128
Msa1401300 MtrunA17_Chr2g0305831 76.271 59 14 0 265 323 1 59 6.09e-26 105
Msa1401300 MtrunA17_Chr3g0126151 45.263 95 51 1 207 301 47 140 4.02e-22 92.4
Msa1401300 MtrunA17_Chr8g0367321 78.000 50 11 0 148 197 144 193 1.18e-21 92.8
Msa1401300 MtrunA17_Chr1g0170761 36.691 139 74 4 143 278 118 245 3.30e-13 71.2
Msa1401300 MtrunA17_Chr1g0158971 53.030 66 27 2 253 318 109 170 5.53e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401300 AT5G57390.1 53.799 487 159 13 75 514 91 558 6.54e-148 436
Msa1401300 AT5G57390.2 57.243 428 138 10 118 514 27 440 2.39e-145 424
Msa1401300 AT1G51190.1 80.734 218 38 2 146 359 174 391 9.88e-125 376
Msa1401300 AT3G20840.1 81.043 211 36 2 148 354 167 377 4.84e-122 370
Msa1401300 AT5G17430.2 86.154 195 23 2 146 336 132 326 9.06e-121 365
Msa1401300 AT5G17430.1 86.154 195 23 2 146 336 194 388 4.48e-120 365
Msa1401300 AT1G72570.1 83.158 190 29 1 149 335 210 399 6.75e-116 348
Msa1401300 AT4G37750.1 64.130 276 83 6 150 412 271 543 5.33e-114 348
Msa1401300 AT5G10510.2 72.803 239 52 3 121 359 200 425 5.58e-110 338
Msa1401300 AT5G65510.4 73.568 227 46 2 121 344 143 358 1.38e-108 330
Msa1401300 AT5G65510.2 73.568 227 46 2 121 344 201 416 4.18e-108 331
Msa1401300 AT5G65510.1 73.568 227 46 2 121 344 201 416 4.18e-108 331
Msa1401300 AT5G10510.7 71.901 242 52 4 121 359 200 428 8.09e-108 332
Msa1401300 AT5G10510.5 71.901 242 52 4 121 359 200 428 8.09e-108 332
Msa1401300 AT5G10510.1 71.901 242 52 4 121 359 223 451 1.35e-107 332
Msa1401300 AT5G10510.6 71.901 242 52 4 121 359 238 466 1.79e-107 332
Msa1401300 AT5G10510.4 71.901 242 52 4 121 359 238 466 1.79e-107 332
Msa1401300 AT5G10510.3 70.417 240 46 3 143 359 249 486 4.81e-103 322
Msa1401300 AT5G65510.3 74.857 175 30 2 121 292 143 306 8.41e-91 280
Msa1401300 AT3G54320.3 67.456 169 52 1 158 323 61 229 2.35e-70 231
Msa1401300 AT3G54320.1 67.456 169 52 1 158 323 61 229 2.69e-70 231
Msa1401300 AT1G16060.1 69.231 169 49 1 158 323 54 222 2.39e-65 216
Msa1401300 AT1G79700.2 68.639 169 50 1 158 323 48 216 5.69e-65 213
Msa1401300 AT1G79700.1 64.497 169 47 2 158 323 48 206 5.64e-57 192
Msa1401300 AT3G54320.4 68.750 128 40 0 196 323 36 163 1.72e-51 179
Msa1401300 AT3G54320.5 68.750 128 40 0 196 323 36 163 1.72e-51 179
Msa1401300 AT1G79700.3 69.531 128 39 0 196 323 13 140 9.47e-46 160
Msa1401300 AT1G79700.4 69.531 128 39 0 196 323 7 134 9.81e-46 160
Msa1401300 AT1G16060.3 68.657 134 42 0 190 323 19 152 2.29e-45 160
Msa1401300 AT2G41710.1 59.848 132 45 2 155 283 63 189 1.88e-41 154
Msa1401300 AT2G41710.4 59.848 132 45 2 155 283 63 189 3.77e-41 154
Msa1401300 AT4G36920.1 50.259 193 81 5 143 332 113 293 7.11e-41 152
Msa1401300 AT4G36920.2 50.259 193 81 5 143 332 113 293 7.11e-41 152
Msa1401300 AT2G41710.2 57.664 137 45 3 155 283 63 194 4.87e-39 147
Msa1401300 AT2G28550.3 49.143 175 73 5 163 332 154 317 5.15e-38 145
Msa1401300 AT5G67180.2 46.842 190 90 4 135 324 72 250 8.03e-38 141
Msa1401300 AT5G67180.3 46.842 190 90 4 135 324 72 250 1.37e-37 140
Msa1401300 AT5G67180.1 47.150 193 85 5 135 324 72 250 3.83e-37 140
Msa1401300 AT2G41710.3 47.305 167 45 3 155 283 63 224 9.47e-35 136
Msa1401300 AT1G16060.2 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa1401300 AT1G16060.4 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa1401300 AT1G16060.6 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa1401300 AT1G16060.5 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa1401300 AT3G54320.2 71.591 88 25 0 236 323 1 88 5.21e-32 125
Msa1401300 AT2G28550.4 48.571 140 58 4 163 299 154 282 5.18e-30 120
Msa1401300 AT2G28550.1 45.143 175 65 6 163 332 154 302 1.15e-29 121
Msa1401300 AT5G67180.4 44.118 170 84 4 135 304 72 230 2.02e-28 114
Msa1401300 AT2G28550.2 48.413 126 51 4 163 285 154 268 3.68e-25 105
Msa1401300 AT2G28550.6 48.413 126 51 4 163 285 154 268 3.68e-25 105
Msa1401300 AT2G28550.5 35.242 227 108 5 196 407 14 216 1.69e-22 97.8
Msa1401300 AT2G39250.2 42.857 112 51 3 163 271 109 210 1.69e-22 96.7
Msa1401300 AT2G39250.1 42.857 112 51 3 163 271 109 210 4.21e-22 97.8
Msa1401300 AT2G39250.1 40.196 102 55 3 235 332 80 179 9.69e-11 63.5
Msa1401300 AT5G60120.2 29.863 365 185 17 138 480 140 455 2.23e-19 91.7
Msa1401300 AT5G60120.1 37.363 182 81 7 138 316 140 291 6.19e-19 90.1
Msa1401300 AT1G16060.7 79.310 58 12 0 266 323 9 66 6.51e-19 85.1
Msa1401300 AT5G60120.6 37.363 182 81 7 138 316 140 291 6.92e-19 89.7
Msa1401300 AT5G60120.4 42.105 152 66 6 138 284 140 274 7.79e-19 89.0
Msa1401300 AT5G60120.3 42.105 152 66 6 138 284 140 274 7.79e-19 89.0
Msa1401300 AT5G60120.5 42.105 152 66 6 138 284 140 274 7.79e-19 89.0
Msa1401300 AT3G54990.2 47.170 106 43 3 163 265 123 218 2.27e-17 82.4
Msa1401300 AT3G54990.1 47.170 106 43 3 163 265 123 218 6.73e-17 82.4
Msa1401300 AT1G36060.1 38.318 107 60 2 252 358 133 233 3.80e-11 64.7
Msa1401300 AT1G03800.1 35.338 133 75 3 231 363 22 143 4.16e-11 63.9
Msa1401300 AT5G65130.1 32.571 175 94 6 250 405 99 268 5.20e-11 63.9
Msa1401300 AT5G65130.2 32.571 175 94 6 250 405 101 270 5.72e-11 63.9
Msa1401300 AT2G20880.1 44.578 83 45 1 236 318 161 242 7.46e-11 63.9

Find 157 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTTCAAACGCCAATATT+TGG 0.167429 tig0022511:+43919 Msa1401300:CDS
TTGAATTGGTTCGTTGATTT+TGG 0.203511 tig0022511:-43464 None:intergenic
AGGATTAGGAAAGTTATTAT+TGG 0.265279 tig0022511:-40573 None:intergenic
AAGACCCTTCTACCGATTAT+TGG 0.267990 tig0022511:+43557 Msa1401300:CDS
TGAAGCTTAGTTGGTTTCTT+TGG 0.274376 tig0022511:-40434 None:intergenic
CAGCACTGCTAGGGTTATTA+TGG 0.274613 tig0022511:-43597 None:intergenic
GTAGAAGGGTCTTGTTTAAT+AGG 0.278427 tig0022511:-43547 None:intergenic
GCTCATTCCATTCCAAATAT+TGG 0.285129 tig0022511:-43931 None:intergenic
TTACTATTTAAAGAAAATAT+TGG 0.298151 tig0022511:-43811 None:intergenic
ATCTTGCTGCTCTCAAGTAC+TGG 0.314872 tig0022511:+42251 Msa1401300:CDS
CTTATTTGATAAACCTCCTA+TGG 0.315963 tig0022511:-43407 None:intergenic
AAGGTAGAGGTCTTTGTTTC+CGG 0.318164 tig0022511:-42853 None:intergenic
GGAGATATGAAGCACATCTA+TGG 0.326305 tig0022511:+41344 Msa1401300:CDS
CTTGTGGCTGCCGGTGAATA+TGG 0.331498 tig0022511:-40853 None:intergenic
AACGACCACTACCAACTTTC+CGG 0.338959 tig0022511:+42279 Msa1401300:CDS
CACAAGTTCGAGGACTTCTT+AGG 0.357176 tig0022511:+40870 Msa1401300:CDS
ATTGCAGCAATCAAATTTAG+AGG 0.358044 tig0022511:+43316 Msa1401300:CDS
GAGGTGTTGTTAGTGTTTGT+AGG 0.362481 tig0022511:-40533 None:intergenic
GAAGATGAGTGGGAAGGATT+AGG 0.362867 tig0022511:-40587 None:intergenic
GACATGATTTATGAGTATAA+TGG 0.370754 tig0022511:+44275 Msa1401300:three_prime_UTR
TTGGACCAATAATCGGTAGA+AGG 0.379956 tig0022511:-43562 None:intergenic
TATGAGAATGGTACTAGTTA+TGG 0.381199 tig0022511:+43844 Msa1401300:CDS
GGTATTATAGAGGAAGGATA+AGG 0.383296 tig0022511:-40641 None:intergenic
ATTATGGAAGCCGAGAATAT+TGG 0.385997 tig0022511:-43581 None:intergenic
ACATGATTTATGAGTATAAT+GGG 0.387504 tig0022511:+44276 Msa1401300:three_prime_UTR
CCTGGTGACACCGCGATAGA+TGG 0.390623 tig0022511:-41099 None:intergenic
CGATGGCGTTGAAGCTTAGT+TGG 0.395432 tig0022511:-40443 None:intergenic
GACTTGGCTTTGCATGTGTT+TGG 0.396154 tig0022511:-43897 None:intergenic
GGAATGAGCTCATGCATATC+AGG 0.398293 tig0022511:+43945 Msa1401300:exon
AGGTGTTGTTAGTGTTTGTA+GGG 0.402140 tig0022511:-40532 None:intergenic
TCTATTTCGTCAGATTGAAT+TGG 0.402860 tig0022511:-43478 None:intergenic
ATCAATCTCCTTCTCATAGT+TGG 0.408692 tig0022511:-42429 None:intergenic
GTATTATAGAGGAAGGATAA+GGG 0.409045 tig0022511:-40640 None:intergenic
AATGGTACTAGTTATGGAAA+TGG 0.413030 tig0022511:+43850 Msa1401300:CDS
ATGGTACCAACACAATGAAA+TGG 0.414251 tig0022511:-44318 None:intergenic
GATTATTGGTCCAATATTCT+CGG 0.416679 tig0022511:+43571 Msa1401300:CDS
GTTATGGAAATGGAAATAAC+TGG 0.419371 tig0022511:+43860 Msa1401300:CDS
ACAATAGCTGCTTGCTTCCC+TGG 0.422931 tig0022511:+40996 Msa1401300:CDS
TGTAATCCATTTCATTGTGT+TGG 0.424726 tig0022511:+44312 Msa1401300:three_prime_UTR
TTGCCTGCCATCGGCCATGC+TGG 0.430696 tig0022511:-42815 None:intergenic
GGTTCGGTGGGGTAGCCACC+AGG 0.431604 tig0022511:-41014 None:intergenic
GAGAATATTGGACCAATAAT+CGG 0.435797 tig0022511:-43569 None:intergenic
TTATCACTGTTGGTATTTGA+AGG 0.440953 tig0022511:-43661 None:intergenic
TGACGACGAAGATGAAGAAT+TGG 0.441913 tig0022511:-43758 None:intergenic
GTTGCGGCGGCTGTTCTTGT+TGG 0.443667 tig0022511:-40906 None:intergenic
AGGTTCGGAGTTTGGTTCGG+TGG 0.444923 tig0022511:-41027 None:intergenic
GAGAGATGGTGGTATTATAG+AGG 0.451776 tig0022511:-40651 None:intergenic
GCAAGAATAGGCAGAGTTGC+CGG 0.451955 tig0022511:+42834 Msa1401300:CDS
TAATTTAGGTGGCTATGATA+AGG 0.452771 tig0022511:+42204 Msa1401300:intron
GGTTCGGAGTTTGGTTCGGT+GGG 0.458866 tig0022511:-41026 None:intergenic
TTGAGGTTCGGAGTTTGGTT+CGG 0.459991 tig0022511:-41030 None:intergenic
TCTTGCTGCTCTCAAGTACT+GGG 0.460585 tig0022511:+42252 Msa1401300:CDS
GGCTGTTCTTGTTGGTGCAA+CGG 0.461915 tig0022511:-40898 None:intergenic
AAGGATAAGGGGTGAAGGAG+TGG 0.462972 tig0022511:-40628 None:intergenic
GGAAATGGAAATAACTGGAT+TGG 0.463612 tig0022511:+43865 Msa1401300:CDS
GATGGTGGTATTATAGAGGA+AGG 0.464335 tig0022511:-40647 None:intergenic
GAAAATATTGGTGTTGCGAA+TGG 0.474020 tig0022511:-43799 None:intergenic
CCATCTATCGCGGTGTCACC+AGG 0.475525 tig0022511:+41099 Msa1401300:CDS
GTTCCTCCATCTGTTGCCTC+TGG 0.480278 tig0022511:-40819 None:intergenic
AGGGTCTTGTTTAATAGGTA+AGG 0.484892 tig0022511:-43542 None:intergenic
GATGATGATGAAAGTGTTGA+AGG 0.487520 tig0022511:+44021 Msa1401300:three_prime_UTR
GAGGTGAGAGGAAGATGAGT+GGG 0.487978 tig0022511:-40597 None:intergenic
AGAGGAAGGATAAGGGGTGA+AGG 0.490294 tig0022511:-40633 None:intergenic
ACAATGAAATGGATTACAAA+AGG 0.493633 tig0022511:-44307 None:intergenic
GTCCTCGAACTTGTGGCTGC+CGG 0.496373 tig0022511:-40862 None:intergenic
TCAAACGCCAATATTTGGAA+TGG 0.498126 tig0022511:+43924 Msa1401300:CDS
AATAGTAGTAGTTATGAGAA+TGG 0.502038 tig0022511:+43832 Msa1401300:CDS
TATTGGAAAGAGAGAAAGCG+AGG 0.505616 tig0022511:-40556 None:intergenic
GGTGAATATGGAGAGGTTTG+TGG 0.510555 tig0022511:-40841 None:intergenic
GGCCGATGGCAGGCAAGAAT+AGG 0.512416 tig0022511:+42822 Msa1401300:CDS
GTGGTAGTAACAGCACTGCT+AGG 0.512894 tig0022511:-43607 None:intergenic
GGAAAGAGAGAAAGCGAGGG+AGG 0.518672 tig0022511:-40552 None:intergenic
TGAAGGAGTGGAAAAGAGAG+AGG 0.524119 tig0022511:-40616 None:intergenic
TGCCTCTGGTGAAGCTTCCA+CGG 0.528484 tig0022511:-40805 None:intergenic
AATAGTTCTCTTCCCATAGG+AGG 0.530212 tig0022511:+43394 Msa1401300:CDS
GAAAACTGCTGAAGCTGTGT+GGG 0.532869 tig0022511:-40936 None:intergenic
CCACCAGCATGGCCGATGGC+AGG 0.533190 tig0022511:+42812 Msa1401300:CDS
TACTGAAAGTGCCAAGGTAG+AGG 0.534747 tig0022511:-42866 None:intergenic
CTAAGAAGTCCTCGAACTTG+TGG 0.537216 tig0022511:-40869 None:intergenic
CCTGCCATCGGCCATGCTGG+TGG 0.544113 tig0022511:-42812 None:intergenic
TGCCTATTCTTGCCTGCCAT+CGG 0.545171 tig0022511:-42824 None:intergenic
TGAAAGTGTTGAAGGAAGGA+AGG 0.546554 tig0022511:+44029 Msa1401300:three_prime_UTR
GGAATTATATATATCATTGT+CGG 0.547335 tig0022511:-40961 None:intergenic
GTGGAAAAGAGAGAGGTGAG+AGG 0.548112 tig0022511:-40609 None:intergenic
ATTGGAAAGAGAGAAAGCGA+GGG 0.549140 tig0022511:-40555 None:intergenic
AGAGGTGAGAGGAAGATGAG+TGG 0.549550 tig0022511:-40598 None:intergenic
GCAAATAGTTCTCTTCCCAT+AGG 0.555242 tig0022511:+43391 Msa1401300:CDS
CCACCATCTCTCACCCTCAC+AGG 0.557858 tig0022511:+40662 Msa1401300:CDS
TGAGAGGAAGATGAGTGGGA+AGG 0.558701 tig0022511:-40593 None:intergenic
GAGATATGAAGCACATCTAT+GGG 0.559005 tig0022511:+41345 Msa1401300:CDS
CAAAATATGAACGGAAGCAG+TGG 0.559047 tig0022511:+43733 Msa1401300:CDS
AGGGAAGGACAAAGTAGGAA+AGG 0.559779 tig0022511:+41382 Msa1401300:CDS
GTACAAACTTACCGGAAAGT+TGG 0.561227 tig0022511:-42290 None:intergenic
CAATTTACAGAGGGGTAACA+AGG 0.562932 tig0022511:+42643 Msa1401300:CDS
TTATTTGATAAACCTCCTAT+GGG 0.563688 tig0022511:-43406 None:intergenic
GTTGCCGACGAAGTTGAAGA+TGG 0.564476 tig0022511:-43505 None:intergenic
TGGTAGTAACAGCACTGCTA+GGG 0.567073 tig0022511:-43606 None:intergenic
CACCGGCAGCCACAAGTTCG+AGG 0.568522 tig0022511:+40860 Msa1401300:CDS
GGAAAGTTGGTAGTGGTCGT+TGG 0.570366 tig0022511:-42277 None:intergenic
GGAAACAAAGACCTCTACCT+TGG 0.572572 tig0022511:+42855 Msa1401300:CDS
GTGTTGTTAGTGTTTGTAGG+GGG 0.575757 tig0022511:-40530 None:intergenic
AAGAGTAGTGGTTTCTCAAG+AGG 0.576512 tig0022511:+42615 Msa1401300:CDS
GATGGAGGTGCGTTGTCCGA+AGG 0.579181 tig0022511:-41081 None:intergenic
GCTTCACCAGAGGCAACAGA+TGG 0.579683 tig0022511:+40813 Msa1401300:CDS
TACTACCACACCATTCAACA+TGG 0.582642 tig0022511:+43621 Msa1401300:CDS
TTTCAGCAACAAAATATGAA+CGG 0.583240 tig0022511:+43724 Msa1401300:CDS
TCAGATTTCCAACTATGAGA+AGG 0.583626 tig0022511:+42421 Msa1401300:intron
TATGGGACAATAGTTGCAGA+AGG 0.584131 tig0022511:+41362 Msa1401300:CDS
GACACCACCAGCATGGCCGA+TGG 0.584738 tig0022511:+42808 Msa1401300:intron
GACAATAGTTGCAGAAGGGA+AGG 0.585408 tig0022511:+41367 Msa1401300:CDS
TATTATAGAGGAAGGATAAG+GGG 0.586147 tig0022511:-40639 None:intergenic
TCATGCATATCAGGTGCTGA+TGG 0.589848 tig0022511:+43954 Msa1401300:three_prime_UTR
GGAGAGAGAAAGACCTGTGA+GGG 0.590470 tig0022511:-40675 None:intergenic
TGGACCAATAATCGGTAGAA+GGG 0.591088 tig0022511:-43561 None:intergenic
TCATCCATCTTCAACTTCGT+CGG 0.591398 tig0022511:+43501 Msa1401300:CDS
ATATGAACGTGAAATATCGA+TGG 0.594272 tig0022511:-40460 None:intergenic
CAAAGTAGGAAAGGAAGACA+AGG 0.595973 tig0022511:+41391 Msa1401300:CDS
GAAGGACAGTGTTGTAGTGA+TGG 0.596070 tig0022511:+44047 Msa1401300:three_prime_UTR
GCAGAAGGGAAGGACAAAGT+AGG 0.597553 tig0022511:+41377 Msa1401300:CDS
GGTGTTGTTAGTGTTTGTAG+GGG 0.599101 tig0022511:-40531 None:intergenic
GTTCGGAGTTTGGTTCGGTG+GGG 0.599227 tig0022511:-41025 None:intergenic
GGTTTCTGATGCAGAATCTG+TGG 0.599958 tig0022511:-43443 None:intergenic
TCATGTTATAGGAAGAGTAG+TGG 0.600719 tig0022511:+42603 Msa1401300:intron
ATTGGCGTTTGAAACAGACT+TGG 0.602086 tig0022511:-43913 None:intergenic
GTTCGGTGGGGTAGCCACCA+GGG 0.604192 tig0022511:-41013 None:intergenic
ATTATATATATCATTGTCGG+TGG 0.604777 tig0022511:-40958 None:intergenic
CTGTGTGGGTGCACACGTTG+CGG 0.605215 tig0022511:-40922 None:intergenic
GAGGAGCATCAATTTACAGA+GGG 0.606917 tig0022511:+42634 Msa1401300:CDS
ATTGTGGGGATTATCACTGT+TGG 0.607060 tig0022511:-43671 None:intergenic
AATTTGTTGCTTCTCTACGA+AGG 0.609124 tig0022511:+42477 Msa1401300:CDS
ACAAACCTCTCCATATTCAC+CGG 0.611418 tig0022511:+40843 Msa1401300:CDS
ATGATGAAAGTGTTGAAGGA+AGG 0.612896 tig0022511:+44025 Msa1401300:three_prime_UTR
TCACCAGAGGCAACAGATGG+AGG 0.617655 tig0022511:+40816 Msa1401300:CDS
TGCAAAGCAATAGAATCAGA+AGG 0.621670 tig0022511:+44087 Msa1401300:three_prime_UTR
AATAGAATCAGAAGGAAACA+AGG 0.627213 tig0022511:+44095 Msa1401300:three_prime_UTR
TCCAGGAAGCAGCAACGCCG+TGG 0.632938 tig0022511:+40788 Msa1401300:intron
CGCCGTGGAAGCTTCACCAG+AGG 0.633581 tig0022511:+40803 Msa1401300:CDS
CCTGTGAGGGTGAGAGATGG+TGG 0.636945 tig0022511:-40662 None:intergenic
GGAAAACTGCTGAAGCTGTG+TGG 0.638121 tig0022511:-40937 None:intergenic
TGTGGGTGCACACGTTGCGG+CGG 0.646698 tig0022511:-40919 None:intergenic
TGGTGCAGACACCACCAGCA+TGG 0.647953 tig0022511:+42801 Msa1401300:intron
AAAATCCATGTTGAATGGTG+TGG 0.648019 tig0022511:-43626 None:intergenic
ACTTACCGGAAAGTTGGTAG+TGG 0.649056 tig0022511:-42284 None:intergenic
ATGGGACAATAGTTGCAGAA+GGG 0.651127 tig0022511:+41363 Msa1401300:CDS
GCGTTGTCCGAAGGTATCAA+CGG 0.652510 tig0022511:-41072 None:intergenic
AGTACATACTGAAAGTGCCA+AGG 0.656101 tig0022511:-42872 None:intergenic
GGTGACACCGCGATAGATGG+AGG 0.661765 tig0022511:-41096 None:intergenic
AGACCTGTGAGGGTGAGAGA+TGG 0.662144 tig0022511:-40665 None:intergenic
TGAATAATAGTACACAACAA+TGG 0.675034 tig0022511:-44337 None:intergenic
ATAGCTGCTTGCTTCCCTGG+TGG 0.677407 tig0022511:+40999 Msa1401300:CDS
CTTGCTGCTCTCAAGTACTG+GGG 0.677546 tig0022511:+42253 Msa1401300:CDS
GGCTGCCGGTGAATATGGAG+AGG 0.695158 tig0022511:-40848 None:intergenic
CAACGCACCTCCATCTATCG+CGG 0.695636 tig0022511:+41089 Msa1401300:CDS
AGAGGAGCATCAATTTACAG+AGG 0.704191 tig0022511:+42633 Msa1401300:CDS
GGGAGAGAGAAAGACCTGTG+AGG 0.704212 tig0022511:-40676 None:intergenic
AAATTGAAGACTTAAAACAA+AGG 0.710279 tig0022511:-44194 None:intergenic
AGGAGCATCAATTTACAGAG+GGG 0.728920 tig0022511:+42635 Msa1401300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAAATTTTTAAAAAAA+TGG - tig0022511:43101-43120 None:intergenic 0.0%
!!! TTTGTTTTTTGTTATAATTT+AGG + tig0022511:42190-42209 Msa1401300:intron 10.0%
!!! AAATTATATGAATAGTTTTA+TGG + tig0022511:42564-42583 Msa1401300:intron 10.0%
!! TTATTTATAGTATACTATAA+AGG + tig0022511:43000-43019 Msa1401300:intron 10.0%
!! TATTTATAGTATACTATAAA+GGG + tig0022511:43001-43020 Msa1401300:intron 10.0%
!! TATATTATTATTATGTCATT+AGG - tig0022511:43158-43177 None:intergenic 10.0%
!! TAAATTGAAAAAAAATGATT+AGG - tig0022511:43250-43269 None:intergenic 10.0%
!! TTACTATTTAAAGAAAATAT+TGG - tig0022511:43814-43833 None:intergenic 10.0%
!! TGAAAGATTATTTATATGTA+GGG + tig0022511:41434-41453 Msa1401300:intron 15.0%
!! TAGTAGTATAAATTTGAATA+AGG + tig0022511:41514-41533 Msa1401300:intron 15.0%
!! TTATTATGATCAAAATAGAT+CGG + tig0022511:41869-41888 Msa1401300:intron 15.0%
!! CATTATACAGTAAAATAAAA+GGG - tig0022511:42334-42353 None:intergenic 15.0%
!!! AATGTTTTACATTTTTTTGT+TGG + tig0022511:42389-42408 Msa1401300:intron 15.0%
!! AAACAGTTTAATAAAAAAAC+TGG - tig0022511:43048-43067 None:intergenic 15.0%
!! AAAATTGAAAAACACAAAAA+AGG - tig0022511:44222-44241 None:intergenic 15.0%
!!! TTTTTGTGTTTTTCAATTTT+TGG + tig0022511:44222-44241 Msa1401300:three_prime_UTR 15.0%
!!! CTTTTTTTTTTTTCATTTCC+AGG + tig0022511:40771-40790 Msa1401300:intron 20.0%
!! GGAATTATATATATCATTGT+CGG - tig0022511:40964-40983 None:intergenic 20.0%
!! GTGAAAGATTATTTATATGT+AGG + tig0022511:41433-41452 Msa1401300:intron 20.0%
!! TATTATGATCAAAATAGATC+GGG + tig0022511:41870-41889 Msa1401300:intron 20.0%
!!! TAATCATTTAGCTCATAAAA+TGG + tig0022511:42163-42182 Msa1401300:intron 20.0%
!!! GTTTTTTGTTATAATTTAGG+TGG + tig0022511:42193-42212 Msa1401300:intron 20.0%
!! GCATTATACAGTAAAATAAA+AGG - tig0022511:42335-42354 None:intergenic 20.0%
!!! TTTATTTTCCTTCATGTTAT+AGG + tig0022511:42592-42611 Msa1401300:intron 20.0%
!! CACAAAAAATTAAAACTCAA+AGG - tig0022511:42677-42696 None:intergenic 20.0%
!!! CTTTGAGTTTTAATTTTTTG+TGG + tig0022511:42675-42694 Msa1401300:intron 20.0%
!!! TGATAAATTCATATTCGTTT+TGG + tig0022511:42700-42719 Msa1401300:intron 20.0%
!!! TTGAAACAACTTTAATTTGT+TGG + tig0022511:42781-42800 Msa1401300:intron 20.0%
!! TAAAAAAATATTAGATGGGT+CGG - tig0022511:42983-43002 None:intergenic 20.0%
!! AATAAAAAAACTGGCAAAAA+TGG - tig0022511:43039-43058 None:intergenic 20.0%
!! AAATTGAAGACTTAAAACAA+AGG - tig0022511:44197-44216 None:intergenic 20.0%
!! ACATGATTTATGAGTATAAT+GGG + tig0022511:44276-44295 Msa1401300:three_prime_UTR 20.0%
!!! CCATAGTTTGATTTTGTTTT+TGG - tig0022511:40493-40512 None:intergenic 25.0%
! CCAAAAACAAAATCAAACTA+TGG + tig0022511:40490-40509 Msa1401300:exon 25.0%
! AGGATTAGGAAAGTTATTAT+TGG - tig0022511:40576-40595 None:intergenic 25.0%
! ATTATATATATCATTGTCGG+TGG - tig0022511:40961-40980 None:intergenic 25.0%
! AAAAAGCTAGCCAAAATATA+TGG + tig0022511:41186-41205 Msa1401300:intron 25.0%
!! TTGTCTATGTCCATATATTT+TGG - tig0022511:41199-41218 None:intergenic 25.0%
!! TGATAATTTTCAGACATAGA+TGG + tig0022511:41317-41336 Msa1401300:intron 25.0%
! ATTATTTATATGTAGGGACT+AGG + tig0022511:41440-41459 Msa1401300:intron 25.0%
! TTATTTATATGTAGGGACTA+GGG + tig0022511:41441-41460 Msa1401300:intron 25.0%
!! ATCTTTTGCTTCAGTTTATT+TGG + tig0022511:41976-41995 Msa1401300:intron 25.0%
!! TCTTTTGCTTCAGTTTATTT+GGG + tig0022511:41977-41996 Msa1401300:intron 25.0%
!!! ACCAAATCATCATTTTGTTT+TGG + tig0022511:42056-42075 Msa1401300:intron 25.0%
! GATTATTTGTACAAACTTAC+CGG - tig0022511:42301-42320 None:intergenic 25.0%
! ACATTTATGAAAACCGTTAA+AGG - tig0022511:42374-42393 None:intergenic 25.0%
! AATCTAATGATATACACTAG+GGG - tig0022511:42726-42745 None:intergenic 25.0%
! GAATCTAATGATATACACTA+GGG - tig0022511:42727-42746 None:intergenic 25.0%
! AGAATCTAATGATATACACT+AGG - tig0022511:42728-42747 None:intergenic 25.0%
! TGATGTCAATATATGGATAA+TGG - tig0022511:42901-42920 None:intergenic 25.0%
! TGTATAGTGATGTCAATATA+TGG - tig0022511:42908-42927 None:intergenic 25.0%
! TTATTTGATAAACCTCCTAT+GGG - tig0022511:43409-43428 None:intergenic 25.0%
! TTTCAGCAACAAAATATGAA+CGG + tig0022511:43724-43743 Msa1401300:CDS 25.0%
! AATAGTAGTAGTTATGAGAA+TGG + tig0022511:43832-43851 Msa1401300:CDS 25.0%
! GACATGATTTATGAGTATAA+TGG + tig0022511:44275-44294 Msa1401300:three_prime_UTR 25.0%
!!! ACAATGAAATGGATTACAAA+AGG - tig0022511:44310-44329 None:intergenic 25.0%
! TGAATAATAGTACACAACAA+TGG - tig0022511:44340-44359 None:intergenic 25.0%
ATATGAACGTGAAATATCGA+TGG - tig0022511:40463-40482 None:intergenic 30.0%
TATTATAGAGGAAGGATAAG+GGG - tig0022511:40642-40661 None:intergenic 30.0%
GTATTATAGAGGAAGGATAA+GGG - tig0022511:40643-40662 None:intergenic 30.0%
TTAGAGAGAAACTGAGATAT+TGG - tig0022511:40729-40748 None:intergenic 30.0%
!!! AAGGTATCAACGGTTTTTTT+AGG - tig0022511:41065-41084 None:intergenic 30.0%
AAAAAAACCGTTGATACCTT+CGG + tig0022511:41065-41084 Msa1401300:CDS 30.0%
! AATTTTCAGACATAGATGGA+CGG + tig0022511:41321-41340 Msa1401300:intron 30.0%
TCTTTAACTCCCATTTATTC+CGG - tig0022511:41638-41657 None:intergenic 30.0%
TTCAAAACCATTCTCAATCA+AGG + tig0022511:41690-41709 Msa1401300:intron 30.0%
CAGGTACAAAAGCAAAAAAA+AGG - tig0022511:41928-41947 None:intergenic 30.0%
!!! CTTTTTTTTGCTTTTGTACC+TGG + tig0022511:41926-41945 Msa1401300:intron 30.0%
GCCAAAACAAAATGATGATT+TGG - tig0022511:42060-42079 None:intergenic 30.0%
CATTAAAATGTACATGAAGC+AGG - tig0022511:42090-42109 None:intergenic 30.0%
TAATTTAGGTGGCTATGATA+AGG + tig0022511:42204-42223 Msa1401300:intron 30.0%
ATTGCAGCAATCAAATTTAG+AGG + tig0022511:43316-43335 Msa1401300:CDS 30.0%
CTTATTTGATAAACCTCCTA+TGG - tig0022511:43410-43429 None:intergenic 30.0%
!!! TTGAATTGGTTCGTTGATTT+TGG - tig0022511:43467-43486 None:intergenic 30.0%
TCTATTTCGTCAGATTGAAT+TGG - tig0022511:43481-43500 None:intergenic 30.0%
GAGAATATTGGACCAATAAT+CGG - tig0022511:43572-43591 None:intergenic 30.0%
GATTATTGGTCCAATATTCT+CGG + tig0022511:43571-43590 Msa1401300:CDS 30.0%
TTATCACTGTTGGTATTTGA+AGG - tig0022511:43664-43683 None:intergenic 30.0%
TATGAGAATGGTACTAGTTA+TGG + tig0022511:43844-43863 Msa1401300:CDS 30.0%
AATGGTACTAGTTATGGAAA+TGG + tig0022511:43850-43869 Msa1401300:CDS 30.0%
GTTATGGAAATGGAAATAAC+TGG + tig0022511:43860-43879 Msa1401300:CDS 30.0%
AATAGAATCAGAAGGAAACA+AGG + tig0022511:44095-44114 Msa1401300:three_prime_UTR 30.0%
TGTAATCCATTTCATTGTGT+TGG + tig0022511:44312-44331 Msa1401300:three_prime_UTR 30.0%
! TGAAGCTTAGTTGGTTTCTT+TGG - tig0022511:40437-40456 None:intergenic 35.0%
!! AGGTGTTGTTAGTGTTTGTA+GGG - tig0022511:40535-40554 None:intergenic 35.0%
GGTATTATAGAGGAAGGATA+AGG - tig0022511:40644-40663 None:intergenic 35.0%
! AGCTATTGTTTTCTTCAGCT+CGG - tig0022511:40985-41004 None:intergenic 35.0%
!! TTTTTAGGAGAAGGCTTTTG+AGG - tig0022511:41050-41069 None:intergenic 35.0%
!!! TCAACGGTTTTTTTAGGAGA+AGG - tig0022511:41059-41078 None:intergenic 35.0%
AAACATGCACTAAACATACC+TGG - tig0022511:41120-41139 None:intergenic 35.0%
! ATTTTCAGACATAGATGGAC+GGG + tig0022511:41322-41341 Msa1401300:intron 35.0%
GAGATATGAAGCACATCTAT+GGG + tig0022511:41345-41364 Msa1401300:CDS 35.0%
TCTGAATCCTTGATTGAGAA+TGG - tig0022511:41700-41719 None:intergenic 35.0%
! TGAACTTTGAAGATTCTGAC+CGG + tig0022511:41901-41920 Msa1401300:intron 35.0%
ACAAAAGCAAAAAAAAGGCC+CGG - tig0022511:41923-41942 None:intergenic 35.0%
AACTATTCACGCTCCTTTAA+CGG + tig0022511:42358-42377 Msa1401300:intron 35.0%
TCAGATTTCCAACTATGAGA+AGG + tig0022511:42421-42440 Msa1401300:intron 35.0%
ATCAATCTCCTTCTCATAGT+TGG - tig0022511:42432-42451 None:intergenic 35.0%
!! AATTTGTTGCTTCTCTACGA+AGG + tig0022511:42477-42496 Msa1401300:CDS 35.0%
CTACTCTTCCTATAACATGA+AGG - tig0022511:42603-42622 None:intergenic 35.0%
TCATGTTATAGGAAGAGTAG+TGG + tig0022511:42603-42622 Msa1401300:intron 35.0%
GTCTGCATGCTAGTAATTTA+TGG + tig0022511:43195-43214 Msa1401300:intron 35.0%
!! AGGGTCTTGTTTAATAGGTA+AGG - tig0022511:43545-43564 None:intergenic 35.0%
!! GTAGAAGGGTCTTGTTTAAT+AGG - tig0022511:43550-43569 None:intergenic 35.0%
ATTATGGAAGCCGAGAATAT+TGG - tig0022511:43584-43603 None:intergenic 35.0%
AAAATCCATGTTGAATGGTG+TGG - tig0022511:43629-43648 None:intergenic 35.0%
GCAGAAAAATCCATGTTGAA+TGG - tig0022511:43634-43653 None:intergenic 35.0%
ACTGAAAAATGCTGCATTGT+GGG - tig0022511:43689-43708 None:intergenic 35.0%
!! GAAAATATTGGTGTTGCGAA+TGG - tig0022511:43802-43821 None:intergenic 35.0%
GGAAATGGAAATAACTGGAT+TGG + tig0022511:43865-43884 Msa1401300:CDS 35.0%
CTGTTTCAAACGCCAATATT+TGG + tig0022511:43919-43938 Msa1401300:CDS 35.0%
TCAAACGCCAATATTTGGAA+TGG + tig0022511:43924-43943 Msa1401300:CDS 35.0%
GCTCATTCCATTCCAAATAT+TGG - tig0022511:43934-43953 None:intergenic 35.0%
!! GATGATGATGAAAGTGTTGA+AGG + tig0022511:44021-44040 Msa1401300:three_prime_UTR 35.0%
!! ATGATGAAAGTGTTGAAGGA+AGG + tig0022511:44025-44044 Msa1401300:three_prime_UTR 35.0%
TGCAAAGCAATAGAATCAGA+AGG + tig0022511:44087-44106 Msa1401300:three_prime_UTR 35.0%
ATGGTACCAACACAATGAAA+TGG - tig0022511:44321-44340 None:intergenic 35.0%
! GTGTTGTTAGTGTTTGTAGG+GGG - tig0022511:40533-40552 None:intergenic 40.0%
!! GGTGTTGTTAGTGTTTGTAG+GGG - tig0022511:40534-40553 None:intergenic 40.0%
!! GAGGTGTTGTTAGTGTTTGT+AGG - tig0022511:40536-40555 None:intergenic 40.0%
ATTGGAAAGAGAGAAAGCGA+GGG - tig0022511:40558-40577 None:intergenic 40.0%
TATTGGAAAGAGAGAAAGCG+AGG - tig0022511:40559-40578 None:intergenic 40.0%
! GATGGTGGTATTATAGAGGA+AGG - tig0022511:40650-40669 None:intergenic 40.0%
! GAGAGATGGTGGTATTATAG+AGG - tig0022511:40654-40673 None:intergenic 40.0%
ACAAACCTCTCCATATTCAC+CGG + tig0022511:40843-40862 Msa1401300:CDS 40.0%
! TTTTCAGACATAGATGGACG+GGG + tig0022511:41323-41342 Msa1401300:intron 40.0%
GGAGATATGAAGCACATCTA+TGG + tig0022511:41344-41363 Msa1401300:CDS 40.0%
TATGGGACAATAGTTGCAGA+AGG + tig0022511:41362-41381 Msa1401300:CDS 40.0%
ATGGGACAATAGTTGCAGAA+GGG + tig0022511:41363-41382 Msa1401300:CDS 40.0%
CAAAGTAGGAAAGGAAGACA+AGG + tig0022511:41391-41410 Msa1401300:CDS 40.0%
ATCACAAACACTAGATCTCG+TGG - tig0022511:41586-41605 None:intergenic 40.0%
ACGAGATCTAGTGTTTGTGA+TGG + tig0022511:41585-41604 Msa1401300:intron 40.0%
CGAGATCTAGTGTTTGTGAT+GGG + tig0022511:41586-41605 Msa1401300:intron 40.0%
! ATCTAGTGTTTGTGATGGGA+AGG + tig0022511:41590-41609 Msa1401300:intron 40.0%
! TCTAGTGTTTGTGATGGGAA+GGG + tig0022511:41591-41610 Msa1401300:intron 40.0%
GATCAAAATAGATCGGGTGT+TGG + tig0022511:41876-41895 Msa1401300:intron 40.0%
! GAACTTTGAAGATTCTGACC+GGG + tig0022511:41902-41921 Msa1401300:intron 40.0%
GTACAAACTTACCGGAAAGT+TGG - tig0022511:42293-42312 None:intergenic 40.0%
AAGAGTAGTGGTTTCTCAAG+AGG + tig0022511:42615-42634 Msa1401300:CDS 40.0%
!! AGAGGAGCATCAATTTACAG+AGG + tig0022511:42633-42652 Msa1401300:CDS 40.0%
!! GAGGAGCATCAATTTACAGA+GGG + tig0022511:42634-42653 Msa1401300:CDS 40.0%
!! AGGAGCATCAATTTACAGAG+GGG + tig0022511:42635-42654 Msa1401300:CDS 40.0%
CAATTTACAGAGGGGTAACA+AGG + tig0022511:42643-42662 Msa1401300:CDS 40.0%
! AAGGTAGAGGTCTTTGTTTC+CGG - tig0022511:42856-42875 None:intergenic 40.0%
!! AGTACATACTGAAAGTGCCA+AGG - tig0022511:42875-42894 None:intergenic 40.0%
GCAAATAGTTCTCTTCCCAT+AGG + tig0022511:43391-43410 Msa1401300:CDS 40.0%
AATAGTTCTCTTCCCATAGG+AGG + tig0022511:43394-43413 Msa1401300:CDS 40.0%
TCATCCATCTTCAACTTCGT+CGG + tig0022511:43501-43520 Msa1401300:CDS 40.0%
! AAGACCCTTCTACCGATTAT+TGG + tig0022511:43557-43576 Msa1401300:CDS 40.0%
TGGACCAATAATCGGTAGAA+GGG - tig0022511:43564-43583 None:intergenic 40.0%
TTGGACCAATAATCGGTAGA+AGG - tig0022511:43565-43584 None:intergenic 40.0%
TACTACCACACCATTCAACA+TGG + tig0022511:43621-43640 Msa1401300:CDS 40.0%
ATTGTGGGGATTATCACTGT+TGG - tig0022511:43674-43693 None:intergenic 40.0%
CTGAAAAATGCTGCATTGTG+GGG - tig0022511:43688-43707 None:intergenic 40.0%
CACTGAAAAATGCTGCATTG+TGG - tig0022511:43690-43709 None:intergenic 40.0%
!! CACAATGCAGCATTTTTCAG+TGG + tig0022511:43688-43707 Msa1401300:CDS 40.0%
CAAAATATGAACGGAAGCAG+TGG + tig0022511:43733-43752 Msa1401300:CDS 40.0%
TGACGACGAAGATGAAGAAT+TGG - tig0022511:43761-43780 None:intergenic 40.0%
! ATTGGCGTTTGAAACAGACT+TGG - tig0022511:43916-43935 None:intergenic 40.0%
!! TGAAAGTGTTGAAGGAAGGA+AGG + tig0022511:44029-44048 Msa1401300:three_prime_UTR 40.0%
GAAGATGAGTGGGAAGGATT+AGG - tig0022511:40590-40609 None:intergenic 45.0%
TGAAGGAGTGGAAAAGAGAG+AGG - tig0022511:40619-40638 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGATA+GGG - tig0022511:40699-40718 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGAT+AGG - tig0022511:40700-40719 None:intergenic 45.0%
GGTGAATATGGAGAGGTTTG+TGG - tig0022511:40844-40863 None:intergenic 45.0%
CTAAGAAGTCCTCGAACTTG+TGG - tig0022511:40872-40891 None:intergenic 45.0%
CACAAGTTCGAGGACTTCTT+AGG + tig0022511:40870-40889 Msa1401300:CDS 45.0%
GAAAACTGCTGAAGCTGTGT+GGG - tig0022511:40939-40958 None:intergenic 45.0%
TTGAGGTTCGGAGTTTGGTT+CGG - tig0022511:41033-41052 None:intergenic 45.0%
!!! AGGAGAAGGCTTTTGAGGTT+CGG - tig0022511:41045-41064 None:intergenic 45.0%
CAGTGAGTTTAACAGAGTCG+AGG + tig0022511:41147-41166 Msa1401300:intron 45.0%
GACAATAGTTGCAGAAGGGA+AGG + tig0022511:41367-41386 Msa1401300:CDS 45.0%
AGGGAAGGACAAAGTAGGAA+AGG + tig0022511:41382-41401 Msa1401300:CDS 45.0%
ATTGTGTCTAACGTGCGCTA+TGG + tig0022511:41537-41556 Msa1401300:intron 45.0%
TGACCACTGACCGGAATAAA+TGG + tig0022511:41625-41644 Msa1401300:intron 45.0%
GACCACTGACCGGAATAAAT+GGG + tig0022511:41626-41645 Msa1401300:intron 45.0%
TGACAGTGTGACTGATGCAT+TGG - tig0022511:41801-41820 None:intergenic 45.0%
CGAATCAGCAATCATTCACC+AGG - tig0022511:41947-41966 None:intergenic 45.0%
!! GGTGAATGATTGCTGATTCG+TGG + tig0022511:41947-41966 Msa1401300:intron 45.0%
ATCTTGCTGCTCTCAAGTAC+TGG + tig0022511:42251-42270 Msa1401300:CDS 45.0%
TCTTGCTGCTCTCAAGTACT+GGG + tig0022511:42252-42271 Msa1401300:CDS 45.0%
AACGACCACTACCAACTTTC+CGG + tig0022511:42279-42298 Msa1401300:CDS 45.0%
!! ACTTACCGGAAAGTTGGTAG+TGG - tig0022511:42287-42306 None:intergenic 45.0%
GGAAACAAAGACCTCTACCT+TGG + tig0022511:42855-42874 Msa1401300:CDS 45.0%
!! TACTGAAAGTGCCAAGGTAG+AGG - tig0022511:42869-42888 None:intergenic 45.0%
GGTTTCTGATGCAGAATCTG+TGG - tig0022511:43446-43465 None:intergenic 45.0%
CAGCACTGCTAGGGTTATTA+TGG - tig0022511:43600-43619 None:intergenic 45.0%
TGGTAGTAACAGCACTGCTA+GGG - tig0022511:43609-43628 None:intergenic 45.0%
!! GCAGCATTTTTCAGTGGATC+AGG + tig0022511:43694-43713 Msa1401300:CDS 45.0%
!! GACTTGGCTTTGCATGTGTT+TGG - tig0022511:43900-43919 None:intergenic 45.0%
GGAATGAGCTCATGCATATC+AGG + tig0022511:43945-43964 Msa1401300:exon 45.0%
!! TCATGCATATCAGGTGCTGA+TGG + tig0022511:43954-43973 Msa1401300:three_prime_UTR 45.0%
GAAGGACAGTGTTGTAGTGA+TGG + tig0022511:44047-44066 Msa1401300:three_prime_UTR 45.0%
!! TAAATAAAAAAATATTAGAT+GGG - tig0022511:42987-43006 None:intergenic 5.0%
!! ATAAATAAAAAAATATTAGA+TGG - tig0022511:42988-43007 None:intergenic 5.0%
!! AAAATTTATTATTGATATAT+TGG + tig0022511:43109-43128 Msa1401300:intron 5.0%
!!! TCAATTTAATTTATAAATTT+AGG + tig0022511:43262-43281 Msa1401300:intron 5.0%
! CGATGGCGTTGAAGCTTAGT+TGG - tig0022511:40446-40465 None:intergenic 50.0%
GTTTGTAGGGGGTGAAGAAG+AGG - tig0022511:40522-40541 None:intergenic 50.0%
TGAGAGGAAGATGAGTGGGA+AGG - tig0022511:40596-40615 None:intergenic 50.0%
GAGGTGAGAGGAAGATGAGT+GGG - tig0022511:40600-40619 None:intergenic 50.0%
AGAGGTGAGAGGAAGATGAG+TGG - tig0022511:40601-40620 None:intergenic 50.0%
GTGGAAAAGAGAGAGGTGAG+AGG - tig0022511:40612-40631 None:intergenic 50.0%
AAGGATAAGGGGTGAAGGAG+TGG - tig0022511:40631-40650 None:intergenic 50.0%
AGAGGAAGGATAAGGGGTGA+AGG - tig0022511:40636-40655 None:intergenic 50.0%
GGAGAGAGAAAGACCTGTGA+GGG - tig0022511:40678-40697 None:intergenic 50.0%
GGCTGTTCTTGTTGGTGCAA+CGG - tig0022511:40901-40920 None:intergenic 50.0%
GGAAAACTGCTGAAGCTGTG+TGG - tig0022511:40940-40959 None:intergenic 50.0%
ACAATAGCTGCTTGCTTCCC+TGG + tig0022511:40996-41015 Msa1401300:CDS 50.0%
!!! GGCTTTTGAGGTTCGGAGTT+TGG - tig0022511:41038-41057 None:intergenic 50.0%
!! GCGTTGTCCGAAGGTATCAA+CGG - tig0022511:41075-41094 None:intergenic 50.0%
GCAGAAGGGAAGGACAAAGT+AGG + tig0022511:41377-41396 Msa1401300:CDS 50.0%
TGTCTAACGTGCGCTATGGA+TGG + tig0022511:41541-41560 Msa1401300:intron 50.0%
GATGGTACACGGGCAAAAGT+GGG + tig0022511:41559-41578 Msa1401300:intron 50.0%
CAGTGAATGTGACCACTGAC+CGG + tig0022511:41616-41635 Msa1401300:intron 50.0%
CTCCCATTTATTCCGGTCAG+TGG - tig0022511:41631-41650 None:intergenic 50.0%
! CTTGCTGCTCTCAAGTACTG+GGG + tig0022511:42253-42272 Msa1401300:CDS 50.0%
!! GGAAAGTTGGTAGTGGTCGT+TGG - tig0022511:42280-42299 None:intergenic 50.0%
TGCCTATTCTTGCCTGCCAT+CGG - tig0022511:42827-42846 None:intergenic 50.0%
GCAAGAATAGGCAGAGTTGC+CGG + tig0022511:42834-42853 Msa1401300:CDS 50.0%
GTTGCCGACGAAGTTGAAGA+TGG - tig0022511:43508-43527 None:intergenic 50.0%
GTGGTAGTAACAGCACTGCT+AGG - tig0022511:43610-43629 None:intergenic 50.0%
GGAAAGAGAGAAAGCGAGGG+AGG - tig0022511:40555-40574 None:intergenic 55.0%
AGACCTGTGAGGGTGAGAGA+TGG - tig0022511:40668-40687 None:intergenic 55.0%
GGGAGAGAGAAAGACCTGTG+AGG - tig0022511:40679-40698 None:intergenic 55.0%
TGCCTCTGGTGAAGCTTCCA+CGG - tig0022511:40808-40827 None:intergenic 55.0%
GCTTCACCAGAGGCAACAGA+TGG + tig0022511:40813-40832 Msa1401300:CDS 55.0%
TCACCAGAGGCAACAGATGG+AGG + tig0022511:40816-40835 Msa1401300:CDS 55.0%
GTTCCTCCATCTGTTGCCTC+TGG - tig0022511:40822-40841 None:intergenic 55.0%
CTTGTGGCTGCCGGTGAATA+TGG - tig0022511:40856-40875 None:intergenic 55.0%
ATAGCTGCTTGCTTCCCTGG+TGG + tig0022511:40999-41018 Msa1401300:CDS 55.0%
!! GTTCGGAGTTTGGTTCGGTG+GGG - tig0022511:41028-41047 None:intergenic 55.0%
!! GGTTCGGAGTTTGGTTCGGT+GGG - tig0022511:41029-41048 None:intergenic 55.0%
!! AGGTTCGGAGTTTGGTTCGG+TGG - tig0022511:41030-41049 None:intergenic 55.0%
CAACGCACCTCCATCTATCG+CGG + tig0022511:41089-41108 Msa1401300:CDS 55.0%
CGTGCGCTATGGATGGTACA+CGG + tig0022511:41548-41567 Msa1401300:intron 55.0%
GTGCGCTATGGATGGTACAC+GGG + tig0022511:41549-41568 Msa1401300:intron 55.0%
GGATGGTACACGGGCAAAAG+TGG + tig0022511:41558-41577 Msa1401300:intron 55.0%
CGGTCAGTGGTCACATTCAC+TGG - tig0022511:41618-41637 None:intergenic 55.0%
CCTGTGAGGGTGAGAGATGG+TGG - tig0022511:40665-40684 None:intergenic 60.0%
CCACCATCTCTCACCCTCAC+AGG + tig0022511:40662-40681 Msa1401300:CDS 60.0%
GGCTGCCGGTGAATATGGAG+AGG - tig0022511:40851-40870 None:intergenic 60.0%
GTCCTCGAACTTGTGGCTGC+CGG - tig0022511:40865-40884 None:intergenic 60.0%
GTTGCGGCGGCTGTTCTTGT+TGG - tig0022511:40909-40928 None:intergenic 60.0%
CTGTGTGGGTGCACACGTTG+CGG - tig0022511:40925-40944 None:intergenic 60.0%
! GATGGAGGTGCGTTGTCCGA+AGG - tig0022511:41084-41103 None:intergenic 60.0%
GGTGACACCGCGATAGATGG+AGG - tig0022511:41099-41118 None:intergenic 60.0%
CCTGGTGACACCGCGATAGA+TGG - tig0022511:41102-41121 None:intergenic 60.0%
!! CCATCTATCGCGGTGTCACC+AGG + tig0022511:41099-41118 Msa1401300:CDS 60.0%
TGGTGCAGACACCACCAGCA+TGG + tig0022511:42801-42820 Msa1401300:intron 60.0%
GGCCGATGGCAGGCAAGAAT+AGG + tig0022511:42822-42841 Msa1401300:CDS 60.0%
TCCAGGAAGCAGCAACGCCG+TGG + tig0022511:40788-40807 Msa1401300:intron 65.0%
! TCCACGGCGTTGCTGCTTCC+TGG - tig0022511:40792-40811 None:intergenic 65.0%
CGCCGTGGAAGCTTCACCAG+AGG + tig0022511:40803-40822 Msa1401300:CDS 65.0%
CACCGGCAGCCACAAGTTCG+AGG + tig0022511:40860-40879 Msa1401300:CDS 65.0%
TGTGGGTGCACACGTTGCGG+CGG - tig0022511:40922-40941 None:intergenic 65.0%
! GTTCGGTGGGGTAGCCACCA+GGG - tig0022511:41016-41035 None:intergenic 65.0%
GACACCACCAGCATGGCCGA+TGG + tig0022511:42808-42827 Msa1401300:intron 65.0%
TTGCCTGCCATCGGCCATGC+TGG - tig0022511:42818-42837 None:intergenic 65.0%
!! GGTTCGGTGGGGTAGCCACC+AGG - tig0022511:41017-41036 None:intergenic 70.0%
CCTGCCATCGGCCATGCTGG+TGG - tig0022511:42815-42834 None:intergenic 70.0%
CCACCAGCATGGCCGATGGC+AGG + tig0022511:42812-42831 Msa1401300:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0022511 gene 40403 44419 40403 ID=Msa1401300;Name=Msa1401300
tig0022511 mRNA 40403 44419 40403 ID=Msa1401300-mRNA-1;Parent=Msa1401300;Name=Msa1401300-mRNA-1;_AED=0.13;_eAED=0.13;_QI=106|0.85|1|1|1|1|8|468|514
tig0022511 exon 40403 40683 40403 ID=Msa1401300-mRNA-1:exon:18271;Parent=Msa1401300-mRNA-1
tig0022511 exon 40793 41120 40793 ID=Msa1401300-mRNA-1:exon:18272;Parent=Msa1401300-mRNA-1
tig0022511 exon 41330 41412 41330 ID=Msa1401300-mRNA-1:exon:18273;Parent=Msa1401300-mRNA-1
tig0022511 exon 42212 42300 42212 ID=Msa1401300-mRNA-1:exon:18274;Parent=Msa1401300-mRNA-1
tig0022511 exon 42425 42498 42425 ID=Msa1401300-mRNA-1:exon:18275;Parent=Msa1401300-mRNA-1
tig0022511 exon 42614 42664 42614 ID=Msa1401300-mRNA-1:exon:18276;Parent=Msa1401300-mRNA-1
tig0022511 exon 42809 42885 42809 ID=Msa1401300-mRNA-1:exon:18277;Parent=Msa1401300-mRNA-1
tig0022511 exon 43284 44419 43284 ID=Msa1401300-mRNA-1:exon:18278;Parent=Msa1401300-mRNA-1
tig0022511 five_prime_UTR 40403 40508 40403 ID=Msa1401300-mRNA-1:five_prime_utr;Parent=Msa1401300-mRNA-1
tig0022511 CDS 40509 40683 40509 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 CDS 40793 41120 40793 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 CDS 41330 41412 41330 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 CDS 42212 42300 42212 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 CDS 42425 42498 42425 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 CDS 42614 42664 42614 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 CDS 42809 42885 42809 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 CDS 43284 43951 43284 ID=Msa1401300-mRNA-1:cds;Parent=Msa1401300-mRNA-1
tig0022511 three_prime_UTR 43952 44419 43952 ID=Msa1401300-mRNA-1:three_prime_utr;Parent=Msa1401300-mRNA-1
Gene Sequence

>Msa1401300

ATGGACAAATCCTCTTCTTCACCCCCTACAAACACTAACAACACCTCCCTCGCTTTCTCTCTTTCCAATAATAACTTTCCTAATCCTTCCCACTCATCTTCCTCTCACCTCTCTCTTTTCCACTCCTTCACCCCTTATCCTTCCTCTATAATACCACCATCTCTCACCCTCACAGGAAGCAGCAACGCCGTGGAAGCTTCACCAGAGGCAACAGATGGAGGAACCACAAACCTCTCCATATTCACCGGCAGCCACAAGTTCGAGGACTTCTTAGGAAGCTCCGTTGCACCAACAAGAACAGCCGCCGCAACGTGTGCACCCACACAGCTTCAGCAGTTTTCCACCGACAATGATATATATAATTCCGAGCTGAAGAAAACAATAGCTGCTTGCTTCCCTGGTGGCTACCCCACCGAACCAAACTCCGAACCTCAAAAGCCTTCTCCTAAAAAAACCGTTGATACCTTCGGACAACGCACCTCCATCTATCGCGGTGTCACCAGACATAGATGGACGGGGAGATATGAAGCACATCTATGGGACAATAGTTGCAGAAGGGAAGGACAAAGTAGGAAAGGAAGACAAGGTGGCTATGATAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACGACCACTACCAACTTTCCGATTTCCAACTATGAGAAGGAGATTGATGACATGAAGAACATGACTAGACAAGAATTTGTTGCTTCTCTACGAAGGAAGAGTAGTGGTTTCTCAAGAGGAGCATCAATTTACAGAGGGGTAACAAGACACCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAAGAAGCTGCAGAAGCGTATGATATTGCAGCAATCAAATTTAGAGGACTAAATGCAGTAACAAATTTTGACATGAGTCGCTACGACGTAAAGAGTATTGCAAATAGTTCTCTTCCCATAGGAGGTTTATCAAATAAGAACAACAAAAATTCCACAGATTCTGCATCAGAAACCAAAATCAACGAACCAATTCAATCTGACGAAATAGATCATCCATCTTCAACTTCGTCGGCAACAACTTTAAGCTTCGCCTTACCTATTAAACAAGACCCTTCTACCGATTATTGGTCCAATATTCTCGGCTTCCATAATAACCCTAGCAGTGCTGTTACTACCACACCATTCAACATGGATTTTTCTGCTCATGCACCTTCAAATACCAACAGTGATAATCCCCACAATGCAGCATTTTTCAGTGGATCAGGTATATTTTTTCAGCAACAAAATATGAACGGAAGCAGTGGTTCCAATTCTTCATCTTCGTCGTCAGCTTCAACGAGTTCAATTCCATTCGCAACACCAATATTTTCTTTAAATAGTAATAGTAGTAGTTATGAGAATGGTACTAGTTATGGAAATGGAAATAACTGGATTGGACACACATTCCAAACACATGCAAAGCCAAGTCTGTTTCAAACGCCAATATTTGGAATGGAATGA
Protein sequence

>Msa1401300

MDKSSSSPPTNTNNTSLAFSLSNNNFPNPSHSSSSHLSLFHSFTPYPSSIIPPSLTLTGSSNAVEASPEATDGGTTNLSIFTGSHKFEDFLGSSVAPTRTAAATCAPTQLQQFSTDNDIYNSELKKTIAACFPGGYPTEPNSEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKEIDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSASETKINEPIQSDEIDHPSSTSSATTLSFALPIKQDPSTDYWSNILGFHNNPSSAVTTTPFNMDFSAHAPSNTNSDNPHNAAFFSGSGIFFQQQNMNGSSGSNSSSSSSASTSSIPFATPIFSLNSNSSSYENGTSYGNGNNWIGHTFQTHAKPSLFQTPIFGME*