Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195150 | XP_013462997.2 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.57e-91 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195150 | sp|P54770|TYDC3_PAPSO | 74.074 | 135 | 35 | 0 | 2 | 136 | 20 | 154 | 8.33e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195150 | A0A396J8B4 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 7.51e-92 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0195150 | 0.821057 | 4.943623e-53 | -8.615850e-47 |
| Msa0009530 | Msa0195150 | 0.814033 | 1.893301e-51 | -8.615850e-47 |
| Msa0009560 | Msa0195150 | 0.818465 | 1.932307e-52 | -8.615850e-47 |
| Msa0014970 | Msa0195150 | 0.825057 | 5.768116e-54 | -8.615850e-47 |
| Msa0024500 | Msa0195150 | 0.818340 | 2.063422e-52 | -8.615850e-47 |
| Msa0027030 | Msa0195150 | 0.804966 | 1.676172e-49 | -8.615850e-47 |
| Msa0034100 | Msa0195150 | 0.801857 | 7.385938e-49 | -8.615850e-47 |
| Msa0050320 | Msa0195150 | 0.822610 | 2.159923e-53 | -8.615850e-47 |
| Msa0053260 | Msa0195150 | 0.814136 | 1.796160e-51 | -8.615850e-47 |
| Msa0053360 | Msa0195150 | 0.830384 | 3.026887e-55 | -8.615850e-47 |
| Msa0098750 | Msa0195150 | 0.810324 | 1.219996e-50 | -8.615850e-47 |
| Msa0098800 | Msa0195150 | 0.817422 | 3.325573e-52 | -8.615850e-47 |
| Msa0108500 | Msa0195150 | 0.822160 | 2.748885e-53 | -8.615850e-47 |
| Msa0120320 | Msa0195150 | 0.832646 | 8.395033e-56 | -8.615850e-47 |
| Msa0131090 | Msa0195150 | 0.801006 | 1.103614e-48 | -8.615850e-47 |
| Msa0132080 | Msa0195150 | 0.803686 | 3.097299e-49 | -8.615850e-47 |
| Msa0147540 | Msa0195150 | 0.829399 | 5.261159e-55 | -8.615850e-47 |
| Msa0147800 | Msa0195150 | 0.821220 | 4.533831e-53 | -8.615850e-47 |
| Msa0154720 | Msa0195150 | 0.822744 | 2.011283e-53 | -8.615850e-47 |
| Msa0160650 | Msa0195150 | 0.817417 | 3.334448e-52 | -8.615850e-47 |
| Msa0163530 | Msa0195150 | 0.811615 | 6.407045e-51 | -8.615850e-47 |
| Msa0167150 | Msa0195150 | 0.801415 | 9.100660e-49 | -8.615850e-47 |
| Msa0178440 | Msa0195150 | 0.810200 | 1.297291e-50 | -8.615850e-47 |
| Msa0194750 | Msa0195150 | 0.801515 | 8.682930e-49 | -8.615850e-47 |
| Msa0195140 | Msa0195150 | 0.918166 | 2.178367e-86 | -8.615850e-47 |
| Msa0195150 | Msa0208040 | 0.814315 | 1.640360e-51 | -8.615850e-47 |
| Msa0195150 | Msa0209370 | 0.814112 | 1.818136e-51 | -8.615850e-47 |
| Msa0195150 | Msa0218430 | 0.831928 | 1.263791e-55 | -8.615850e-47 |
| Msa0195150 | Msa0225070 | 0.842293 | 2.824662e-58 | -8.615850e-47 |
| Msa0195150 | Msa0236690 | 0.803081 | 4.131942e-49 | -8.615850e-47 |
| Msa0195150 | Msa0239610 | 0.827743 | 1.321617e-54 | -8.615850e-47 |
| Msa0195150 | Msa0240590 | 0.879830 | 9.044661e-70 | -8.615850e-47 |
| Msa0195150 | Msa0240600 | 0.813469 | 2.519635e-51 | -8.615850e-47 |
| Msa0195150 | Msa0266140 | 0.813017 | 3.167350e-51 | -8.615850e-47 |
| Msa0195150 | Msa0267450 | 0.825114 | 5.590702e-54 | -8.615850e-47 |
| Msa0195150 | Msa0267510 | 0.823258 | 1.526236e-53 | -8.615850e-47 |
| Msa0195150 | Msa0269220 | 0.811985 | 5.322386e-51 | -8.615850e-47 |
| Msa0195150 | Msa0279090 | 0.854208 | 1.434533e-61 | -8.615850e-47 |
| Msa0195150 | Msa0295680 | -0.801637 | 8.197598e-49 | -8.615850e-47 |
| Msa0195150 | Msa0297270 | 0.816235 | 6.138194e-52 | -8.615850e-47 |
| Msa0195150 | Msa0304060 | 0.811085 | 8.349076e-51 | -8.615850e-47 |
| Msa0195150 | Msa0308300 | 0.805045 | 1.613643e-49 | -8.615850e-47 |
| Msa0195150 | Msa0328870 | -0.801557 | 8.513827e-49 | -8.615850e-47 |
| Msa0195150 | Msa0339540 | -0.801667 | 8.080285e-49 | -8.615850e-47 |
| Msa0195150 | Msa0364030 | 0.809764 | 1.610226e-50 | -8.615850e-47 |
| Msa0195150 | Msa0367590 | 0.826058 | 3.340667e-54 | -8.615850e-47 |
| Msa0195150 | Msa0371350 | 0.810131 | 1.342215e-50 | -8.615850e-47 |
| Msa0195150 | Msa0375570 | 0.815315 | 9.843179e-52 | -8.615850e-47 |
| Msa0195150 | Msa0403740 | 0.809975 | 1.450826e-50 | -8.615850e-47 |
| Msa0195150 | Msa0412580 | 0.820303 | 7.366658e-53 | -8.615850e-47 |
| Msa0195150 | Msa0419420 | 0.817959 | 2.515196e-52 | -8.615850e-47 |
| Msa0195150 | Msa0424220 | 0.808254 | 3.389960e-50 | -8.615850e-47 |
| Msa0195150 | Msa0428330 | 0.813757 | 2.177156e-51 | -8.615850e-47 |
| Msa0195150 | Msa0436590 | 0.812119 | 4.975972e-51 | -8.615850e-47 |
| Msa0195150 | Msa0436600 | 0.810017 | 1.420603e-50 | -8.615850e-47 |
| Msa0195150 | Msa0436610 | 0.816298 | 5.944255e-52 | -8.615850e-47 |
| Msa0195150 | Msa0450890 | 0.813521 | 2.453690e-51 | -8.615850e-47 |
| Msa0195150 | Msa0456450 | 0.817093 | 3.942429e-52 | -8.615850e-47 |
| Msa0195150 | Msa0457070 | 0.840277 | 9.578022e-58 | -8.615850e-47 |
| Msa0195150 | Msa0459920 | 0.801807 | 7.563869e-49 | -8.615850e-47 |
| Msa0195150 | Msa0508780 | 0.801629 | 8.229427e-49 | -8.615850e-47 |
| Msa0195150 | Msa0515400 | 0.802870 | 4.568924e-49 | -8.615850e-47 |
| Msa0195150 | Msa0520810 | 0.800952 | 1.131821e-48 | -8.615850e-47 |
| Msa0195150 | Msa0538050 | 0.804704 | 1.901240e-49 | -8.615850e-47 |
| Msa0195150 | Msa0545750 | 0.801139 | 1.036479e-48 | -8.615850e-47 |
| Msa0195150 | Msa0554410 | 0.819040 | 1.430977e-52 | -8.615850e-47 |
| Msa0195150 | Msa0555510 | 0.842213 | 2.967199e-58 | -8.615850e-47 |
| Msa0195150 | Msa0565150 | 0.817105 | 3.918165e-52 | -8.615850e-47 |
| Msa0195150 | Msa0565860 | 0.802540 | 5.345189e-49 | -8.615850e-47 |
| Msa0195150 | Msa0568050 | 0.801477 | 8.839380e-49 | -8.615850e-47 |
| Msa0195150 | Msa0579170 | 0.830085 | 3.582418e-55 | -8.615850e-47 |
| Msa0195150 | Msa0579230 | 0.827069 | 1.917641e-54 | -8.615850e-47 |
| Msa0195150 | Msa0580410 | 0.800510 | 1.393636e-48 | -8.615850e-47 |
| Msa0195150 | Msa0585720 | 0.805376 | 1.375622e-49 | -8.615850e-47 |
| Msa0195150 | Msa0587070 | 0.814055 | 1.872363e-51 | -8.615850e-47 |
| Msa0195150 | Msa0607620 | 0.803885 | 2.815875e-49 | -8.615850e-47 |
| Msa0195150 | Msa0608940 | 0.840634 | 7.724944e-58 | -8.615850e-47 |
| Msa0195150 | Msa0612880 | 0.809020 | 2.326215e-50 | -8.615850e-47 |
| Msa0195150 | Msa0615430 | 0.808014 | 3.813714e-50 | -8.615850e-47 |
| Msa0195150 | Msa0625900 | 0.806438 | 8.224899e-50 | -8.615850e-47 |
| Msa0195150 | Msa0634260 | 0.819278 | 1.262883e-52 | -8.615850e-47 |
| Msa0195150 | Msa0638300 | 0.800427 | 1.448684e-48 | -8.615850e-47 |
| Msa0195150 | Msa0642150 | 0.810431 | 1.156697e-50 | -8.615850e-47 |
| Msa0195150 | Msa0647860 | 0.824012 | 1.016594e-53 | -8.615850e-47 |
| Msa0195150 | Msa0648160 | 0.820881 | 5.427111e-53 | -8.615850e-47 |
| Msa0195150 | Msa0648260 | 0.819822 | 9.493319e-53 | -8.615850e-47 |
| Msa0195150 | Msa0649250 | 0.808635 | 2.811356e-50 | -8.615850e-47 |
| Msa0195150 | Msa0649530 | 0.845206 | 4.692552e-59 | -8.615850e-47 |
| Msa0195150 | Msa0659020 | 0.811226 | 7.782997e-51 | -8.615850e-47 |
| Msa0195150 | Msa0663580 | 0.809121 | 2.213195e-50 | -8.615850e-47 |
| Msa0195150 | Msa0663690 | 0.804347 | 2.256531e-49 | -8.615850e-47 |
| Msa0195150 | Msa0690580 | 0.808218 | 3.449950e-50 | -8.615850e-47 |
| Msa0195150 | Msa0691740 | 0.856734 | 2.633704e-62 | -8.615850e-47 |
| Msa0195150 | Msa0698480 | 0.806748 | 7.074901e-50 | -8.615850e-47 |
| Msa0195150 | Msa0698650 | 0.802985 | 4.325902e-49 | -8.615850e-47 |
| Msa0195150 | Msa0702020 | 0.817007 | 4.121218e-52 | -8.615850e-47 |
| Msa0195150 | Msa0702690 | 0.817057 | 4.017229e-52 | -8.615850e-47 |
| Msa0195150 | Msa0712670 | 0.815977 | 7.012212e-52 | -8.615850e-47 |
| Msa0195150 | Msa0717540 | 0.822639 | 2.127023e-53 | -8.615850e-47 |
| Msa0195150 | Msa0720130 | 0.807240 | 5.566597e-50 | -8.615850e-47 |
| Msa0195150 | Msa0734190 | 0.808958 | 2.398133e-50 | -8.615850e-47 |
| Msa0195150 | Msa0754020 | 0.839773 | 1.296260e-57 | -8.615850e-47 |
| Msa0195150 | Msa0756440 | 0.804822 | 1.795940e-49 | -8.615850e-47 |
| Msa0195150 | Msa0769910 | 0.826700 | 2.348700e-54 | -8.615850e-47 |
| Msa0195150 | Msa0770540 | 0.818991 | 1.467791e-52 | -8.615850e-47 |
| Msa0195150 | Msa0772160 | 0.812351 | 4.428847e-51 | -8.615850e-47 |
| Msa0195150 | Msa0774360 | 0.801273 | 9.733599e-49 | -8.615850e-47 |
| Msa0195150 | Msa0797980 | 0.808604 | 2.854899e-50 | -8.615850e-47 |
| Msa0195150 | Msa0802950 | 0.800696 | 1.276874e-48 | -8.615850e-47 |
| Msa0195150 | Msa0807100 | 0.847060 | 1.468590e-59 | -8.615850e-47 |
| Msa0195150 | Msa0807870 | 0.813005 | 3.186144e-51 | -8.615850e-47 |
| Msa0195150 | Msa0812020 | 0.802363 | 5.814326e-49 | -8.615850e-47 |
| Msa0195150 | Msa0812800 | 0.810431 | 1.156882e-50 | -8.615850e-47 |
| Msa0195150 | Msa0833030 | 0.837680 | 4.504580e-57 | -8.615850e-47 |
| Msa0195150 | Msa0835550 | 0.803251 | 3.811787e-49 | -8.615850e-47 |
| Msa0195150 | Msa0844970 | 0.801340 | 9.427829e-49 | -8.615850e-47 |
| Msa0195150 | Msa0846070 | 0.818590 | 1.811032e-52 | -8.615850e-47 |
| Msa0195150 | Msa0848670 | 0.802238 | 6.169304e-49 | -8.615850e-47 |
| Msa0195150 | Msa0852090 | 0.801627 | 8.235813e-49 | -8.615850e-47 |
| Msa0195150 | Msa0853150 | 0.815047 | 1.129391e-51 | -8.615850e-47 |
| Msa0195150 | Msa0868050 | 0.814277 | 1.672208e-51 | -8.615850e-47 |
| Msa0195150 | Msa0876030 | 0.812924 | 3.318156e-51 | -8.615850e-47 |
| Msa0195150 | Msa0899080 | 0.804536 | 2.060652e-49 | -8.615850e-47 |
| Msa0195150 | Msa0912110 | 0.815691 | 8.120034e-52 | -8.615850e-47 |
| Msa0195150 | Msa0925630 | 0.842417 | 2.619287e-58 | -8.615850e-47 |
| Msa0195150 | Msa0931550 | 0.822590 | 2.184138e-53 | -8.615850e-47 |
| Msa0195150 | Msa0947550 | 0.802255 | 6.120009e-49 | -8.615850e-47 |
| Msa0195150 | Msa0950470 | 0.814233 | 1.710214e-51 | -8.615850e-47 |
| Msa0195150 | Msa0950570 | 0.813334 | 2.698475e-51 | -8.615850e-47 |
| Msa0195150 | Msa0967900 | 0.839581 | 1.454987e-57 | -8.615850e-47 |
| Msa0195150 | Msa0975440 | 0.825293 | 5.072862e-54 | -8.615850e-47 |
| Msa0195150 | Msa0978290 | 0.836860 | 7.304979e-57 | -8.615850e-47 |
| Msa0195150 | Msa0984820 | 0.818119 | 2.314764e-52 | -8.615850e-47 |
| Msa0195150 | Msa1004720 | 0.812112 | 4.995444e-51 | -8.615850e-47 |
| Msa0195150 | Msa1014550 | 0.801049 | 1.081689e-48 | -8.615850e-47 |
| Msa0195150 | Msa1025440 | 0.826419 | 2.741100e-54 | -8.615850e-47 |
| Msa0195150 | Msa1031530 | 0.839487 | 1.538561e-57 | -8.615850e-47 |
| Msa0195150 | Msa1038040 | 0.803760 | 2.989715e-49 | -8.615850e-47 |
| Msa0195150 | Msa1038610 | 0.824724 | 6.911832e-54 | -8.615850e-47 |
| Msa0195150 | Msa1043020 | 0.813132 | 2.987737e-51 | -8.615850e-47 |
| Msa0195150 | Msa1052030 | 0.819279 | 1.262661e-52 | -8.615850e-47 |
| Msa0195150 | Msa1070630 | 0.836710 | 7.980017e-57 | -8.615850e-47 |
| Msa0195150 | Msa1078590 | 0.833494 | 5.165481e-56 | -8.615850e-47 |
| Msa0195150 | Msa1078600 | 0.800963 | 1.126288e-48 | -8.615850e-47 |
| Msa0195150 | Msa1078760 | 0.834884 | 2.314800e-56 | -8.615850e-47 |
| Msa0195150 | Msa1078770 | 0.806882 | 6.629180e-50 | -8.615850e-47 |
| Msa0195150 | Msa1088740 | 0.820769 | 5.756712e-53 | -8.615850e-47 |
| Msa0195150 | Msa1089130 | 0.804413 | 2.185976e-49 | -8.615850e-47 |
| Msa0195150 | Msa1090020 | 0.800146 | 1.652700e-48 | -8.615850e-47 |
| Msa0195150 | Msa1093190 | 0.801647 | 8.156301e-49 | -8.615850e-47 |
| Msa0195150 | Msa1096520 | 0.813080 | 3.066831e-51 | -8.615850e-47 |
| Msa0195150 | Msa1096570 | 0.822459 | 2.342274e-53 | -8.615850e-47 |
| Msa0195150 | Msa1101300 | 0.814413 | 1.560194e-51 | -8.615850e-47 |
| Msa0195150 | Msa1140480 | 0.817304 | 3.535348e-52 | -8.615850e-47 |
| Msa0195150 | Msa1143860 | 0.824195 | 9.206182e-54 | -8.615850e-47 |
| Msa0195150 | Msa1158450 | 0.832816 | 7.616211e-56 | -8.615850e-47 |
| Msa0195150 | Msa1169590 | 0.821410 | 4.098216e-53 | -8.615850e-47 |
| Msa0195150 | Msa1169600 | 0.814837 | 1.257140e-51 | -8.615850e-47 |
| Msa0195150 | Msa1175850 | 0.815337 | 9.736460e-52 | -8.615850e-47 |
| Msa0195150 | Msa1181730 | 0.824572 | 7.506368e-54 | -8.615850e-47 |
| Msa0195150 | Msa1190350 | 0.831712 | 1.428738e-55 | -8.615850e-47 |
| Msa0195150 | Msa1191960 | 0.802099 | 6.586724e-49 | -8.615850e-47 |
| Msa0195150 | Msa1194480 | 0.800312 | 1.529073e-48 | -8.615850e-47 |
| Msa0195150 | Msa1199540 | 0.801684 | 8.015930e-49 | -8.615850e-47 |
| Msa0195150 | Msa1202710 | 0.808264 | 3.373652e-50 | -8.615850e-47 |
| Msa0195150 | Msa1203840 | 0.804783 | 1.830002e-49 | -8.615850e-47 |
| Msa0195150 | Msa1204470 | 0.800197 | 1.613408e-48 | -8.615850e-47 |
| Msa0195150 | Msa1205270 | 0.811128 | 8.171923e-51 | -8.615850e-47 |
| Msa0195150 | Msa1225140 | 0.825064 | 5.747531e-54 | -8.615850e-47 |
| Msa0195150 | Msa1228600 | 0.813984 | 1.940699e-51 | -8.615850e-47 |
| Msa0195150 | Msa1235940 | 0.812006 | 5.267449e-51 | -8.615850e-47 |
| Msa0195150 | Msa1236860 | 0.812327 | 4.483751e-51 | -8.615850e-47 |
| Msa0195150 | Msa1243630 | 0.831309 | 1.796213e-55 | -8.615850e-47 |
| Msa0195150 | Msa1244220 | 0.831953 | 1.245960e-55 | -8.615850e-47 |
| Msa0195150 | Msa1255030 | 0.806223 | 9.128693e-50 | -8.615850e-47 |
| Msa0195150 | Msa1256430 | 0.805311 | 1.419095e-49 | -8.615850e-47 |
| Msa0195150 | Msa1266120 | 0.824338 | 8.518890e-54 | -8.615850e-47 |
| Msa0195150 | Msa1277580 | 0.816287 | 5.978581e-52 | -8.615850e-47 |
| Msa0195150 | Msa1279200 | 0.805454 | 1.324552e-49 | -8.615850e-47 |
| Msa0195150 | Msa1279320 | 0.802450 | 5.578615e-49 | -8.615850e-47 |
| Msa0195150 | Msa1286860 | 0.815221 | 1.033101e-51 | -8.615850e-47 |
| Msa0195150 | Msa1296270 | 0.809285 | 2.041061e-50 | -8.615850e-47 |
| Msa0195150 | Msa1297220 | 0.822479 | 2.317439e-53 | -8.615850e-47 |
| Msa0195150 | Msa1298980 | 0.800602 | 1.334615e-48 | -8.615850e-47 |
| Msa0195150 | Msa1308010 | 0.804252 | 2.361461e-49 | -8.615850e-47 |
| Msa0195150 | Msa1308460 | 0.802186 | 6.321336e-49 | -8.615850e-47 |
| Msa0195150 | Msa1317240 | 0.803610 | 3.211592e-49 | -8.615850e-47 |
| Msa0195150 | Msa1323260 | 0.832561 | 8.810818e-56 | -8.615850e-47 |
| Msa0195150 | Msa1327690 | 0.803425 | 3.507435e-49 | -8.615850e-47 |
| Msa0195150 | Msa1330910 | 0.817190 | 3.750204e-52 | -8.615850e-47 |
| Msa0195150 | Msa1342360 | 0.817696 | 2.883797e-52 | -8.615850e-47 |
| Msa0195150 | Msa1343450 | 0.832594 | 8.648545e-56 | -8.615850e-47 |
| Msa0195150 | Msa1346220 | 0.802133 | 6.481409e-49 | -8.615850e-47 |
| Msa0195150 | Msa1346340 | 0.807071 | 6.045548e-50 | -8.615850e-47 |
| Msa0195150 | Msa1348860 | 0.833857 | 4.191287e-56 | -8.615850e-47 |
| Msa0195150 | Msa1356730 | 0.810980 | 8.799051e-51 | -8.615850e-47 |
| Msa0195150 | Msa1366140 | 0.826101 | 3.262278e-54 | -8.615850e-47 |
| Msa0195150 | Msa1367900 | 0.800951 | 1.132413e-48 | -8.615850e-47 |
| Msa0195150 | Msa1376010 | 0.824495 | 7.827978e-54 | -8.615850e-47 |
| Msa0195150 | Msa1384410 | 0.815589 | 8.553939e-52 | -8.615850e-47 |
| Msa0195150 | Msa1384970 | 0.821444 | 4.025127e-53 | -8.615850e-47 |
| Msa0195150 | Msa1388720 | 0.803465 | 3.441533e-49 | -8.615850e-47 |
| Msa0195150 | Msa1408860 | 0.847090 | 1.441170e-59 | -8.615850e-47 |
| Msa0195150 | Msa1414780 | 0.845240 | 4.594668e-59 | -8.615850e-47 |
| Msa0195150 | Msa1418840 | 0.824962 | 6.074638e-54 | -8.615850e-47 |
| Msa0195150 | Msa1430630 | 0.809022 | 2.323710e-50 | -8.615850e-47 |
| Msa0195150 | Msa1436660 | 0.824632 | 7.264483e-54 | -8.615850e-47 |
| Msa0195150 | Msa1446220 | 0.802456 | 5.561408e-49 | -8.615850e-47 |
| Msa0195150 | Msa1450780 | 0.841719 | 4.005853e-58 | -8.615850e-47 |
| Msa0195150 | Msa1450850 | 0.801768 | 7.706415e-49 | -8.615850e-47 |
| Msa0195150 | Msa1460530 | 0.819173 | 1.334672e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195150 | MtrunA17_Chr2g0292021 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.45e-95 | 285 |
| Msa0195150 | MtrunA17_Chr2g0292011 | 98.529 | 136 | 2 | 0 | 1 | 136 | 1 | 136 | 5.68e-95 | 283 |
| Msa0195150 | MtrunA17_Chr7g0237461 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 5.84e-94 | 280 |
| Msa0195150 | MtrunA17_Chr8g0347561 | 75.735 | 136 | 33 | 0 | 1 | 136 | 22 | 157 | 3.13e-73 | 227 |
| Msa0195150 | MtrunA17_Chr7g0262211 | 62.044 | 137 | 52 | 0 | 1 | 137 | 24 | 160 | 2.98e-61 | 196 |
| Msa0195150 | MtrunA17_Chr7g0262201 | 63.433 | 134 | 49 | 0 | 4 | 137 | 1 | 134 | 4.71e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195150 | AT2G20340.2 | 56.204 | 137 | 60 | 0 | 1 | 137 | 9 | 145 | 2.35e-59 | 190 |
| Msa0195150 | AT2G20340.1 | 56.204 | 137 | 60 | 0 | 1 | 137 | 9 | 145 | 5.89e-59 | 189 |
| Msa0195150 | AT4G28680.6 | 57.447 | 141 | 56 | 1 | 1 | 137 | 48 | 188 | 5.49e-57 | 182 |
| Msa0195150 | AT4G28680.7 | 57.447 | 141 | 56 | 1 | 1 | 137 | 48 | 188 | 1.07e-56 | 182 |
| Msa0195150 | AT4G28680.4 | 57.447 | 141 | 56 | 1 | 1 | 137 | 48 | 188 | 4.40e-56 | 183 |
| Msa0195150 | AT4G28680.1 | 57.447 | 141 | 56 | 1 | 1 | 137 | 57 | 197 | 5.82e-56 | 183 |
| Msa0195150 | AT4G28680.2 | 57.447 | 141 | 56 | 1 | 1 | 137 | 57 | 197 | 6.15e-56 | 183 |
| Msa0195150 | AT4G28680.3 | 57.447 | 141 | 56 | 1 | 1 | 137 | 57 | 197 | 6.28e-56 | 183 |
| Msa0195150 | AT4G28680.5 | 57.447 | 141 | 56 | 1 | 1 | 137 | 48 | 188 | 1.10e-55 | 182 |
Find 23 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGCACAGCAGGGTTCTT+AGG | 0.266911 | 2_1:-11893078 | Msa0195150:CDS |
| GGAAAATAAGCAAAGTAATT+AGG | 0.271671 | 2_1:+11893108 | None:intergenic |
| TGAACGTTGTTGGATTTAAC+TGG | 0.304439 | 2_1:-11893035 | Msa0195150:CDS |
| TAGAAAATGTTGTTATAGAT+TGG | 0.319360 | 2_1:-11892987 | Msa0195150:CDS |
| CCTGCTGTGCTACCACTTGA+TGG | 0.350739 | 2_1:+11893087 | None:intergenic |
| TTGAATTCTGTAGTATCTAG+TGG | 0.355450 | 2_1:+11893330 | None:intergenic |
| CCATCAAGTGGTAGCACAGC+AGG | 0.386882 | 2_1:-11893087 | Msa0195150:CDS |
| AGGATGGTTTCAATAGGTTC+AGG | 0.403995 | 2_1:+11893180 | None:intergenic |
| AGCACTGGATTGAACGTTGT+TGG | 0.408006 | 2_1:-11893045 | Msa0195150:CDS |
| TCTTCAAGGATGGTTTCAAT+AGG | 0.409255 | 2_1:+11893174 | None:intergenic |
| CTTTGCCAATGTGTTATACC+TGG | 0.443144 | 2_1:+11893132 | None:intergenic |
| TTAGGAGAAATGTTAAGCAC+TGG | 0.472185 | 2_1:-11893060 | Msa0195150:CDS |
| AGTTTGGTTCTACTTGACTT+AGG | 0.478980 | 2_1:+11893241 | None:intergenic |
| TGAATTCTGTAGTATCTAGT+GGG | 0.505218 | 2_1:+11893331 | None:intergenic |
| GGATTTGAAGGTGCAAAAGA+AGG | 0.506622 | 2_1:+11893201 | None:intergenic |
| GGTTCTACTTGACTTAGGAC+AGG | 0.513633 | 2_1:+11893246 | None:intergenic |
| TCAATAGGTTCAGGATTTGA+AGG | 0.516728 | 2_1:+11893189 | None:intergenic |
| AATGTTGTTATAGATTGGCT+TGG | 0.556855 | 2_1:-11892982 | Msa0195150:CDS |
| CTACTTGACTTAGGACAGGA+TGG | 0.557815 | 2_1:+11893250 | None:intergenic |
| TTTGCCAATGTGTTATACCT+GGG | 0.567911 | 2_1:+11893133 | None:intergenic |
| CATCAAGTGGTAGCACAGCA+GGG | 0.607312 | 2_1:-11893086 | Msa0195150:CDS |
| TAATCCCAGGTATAACACAT+TGG | 0.657713 | 2_1:-11893137 | Msa0195150:CDS |
| ACTACAGAATTCAAGAAACA+AGG | 0.665050 | 2_1:-11893321 | Msa0195150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATGTTTTCATAATAAT+CGG | + | chr2_1:11893009-11893028 | None:intergenic | 15.0% |
| !! | TAGAAAATGTTGTTATAGAT+TGG | - | chr2_1:11893294-11893313 | Msa0195150:CDS | 20.0% |
| !!! | TTTTTGATAATCTTCAAGGA+TGG | + | chr2_1:11893120-11893139 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTGATAATCTTCA+AGG | + | chr2_1:11893124-11893143 | None:intergenic | 25.0% |
| ! | GGAAAATAAGCAAAGTAATT+AGG | + | chr2_1:11893176-11893195 | None:intergenic | 25.0% |
| TGAATTCTGTAGTATCTAGT+GGG | + | chr2_1:11892953-11892972 | None:intergenic | 30.0% | |
| TTGAATTCTGTAGTATCTAG+TGG | + | chr2_1:11892954-11892973 | None:intergenic | 30.0% | |
| ACTACAGAATTCAAGAAACA+AGG | - | chr2_1:11892960-11892979 | Msa0195150:CDS | 30.0% | |
| ! | TGTTTTCATAATAATCGGCT+AGG | + | chr2_1:11893004-11893023 | None:intergenic | 30.0% |
| !!! | AACAGTTTTTTGAGGTAGTT+TGG | + | chr2_1:11893059-11893078 | None:intergenic | 30.0% |
| !!! | AAGAAGGTAACAGTTTTTTG+AGG | + | chr2_1:11893067-11893086 | None:intergenic | 30.0% |
| TATCAAAAACACATAATCCC+AGG | - | chr2_1:11893131-11893150 | Msa0195150:CDS | 30.0% | |
| !! | TTTGCTTATTTTCCATCAAG+TGG | - | chr2_1:11893182-11893201 | Msa0195150:CDS | 30.0% |
| ! | AATGTTGTTATAGATTGGCT+TGG | - | chr2_1:11893299-11893318 | Msa0195150:CDS | 30.0% |
| !! | AGTTTGGTTCTACTTGACTT+AGG | + | chr2_1:11893043-11893062 | None:intergenic | 35.0% |
| TCAATAGGTTCAGGATTTGA+AGG | + | chr2_1:11893095-11893114 | None:intergenic | 35.0% | |
| TCTTCAAGGATGGTTTCAAT+AGG | + | chr2_1:11893110-11893129 | None:intergenic | 35.0% | |
| TAATCCCAGGTATAACACAT+TGG | - | chr2_1:11893144-11893163 | Msa0195150:CDS | 35.0% | |
| TTTGCCAATGTGTTATACCT+GGG | + | chr2_1:11893151-11893170 | None:intergenic | 35.0% | |
| TTAGGAGAAATGTTAAGCAC+TGG | - | chr2_1:11893221-11893240 | Msa0195150:CDS | 35.0% | |
| TGAACGTTGTTGGATTTAAC+TGG | - | chr2_1:11893246-11893265 | Msa0195150:CDS | 35.0% | |
| ! | GGATTTGAAGGTGCAAAAGA+AGG | + | chr2_1:11893083-11893102 | None:intergenic | 40.0% |
| AGGATGGTTTCAATAGGTTC+AGG | + | chr2_1:11893104-11893123 | None:intergenic | 40.0% | |
| CTTTGCCAATGTGTTATACC+TGG | + | chr2_1:11893152-11893171 | None:intergenic | 40.0% | |
| !!! | TTTTCTAGTTCTGTAGCAGC+TGG | + | chr2_1:11893281-11893300 | None:intergenic | 40.0% |
| CTACTTGACTTAGGACAGGA+TGG | + | chr2_1:11893034-11893053 | None:intergenic | 45.0% | |
| GGTTCTACTTGACTTAGGAC+AGG | + | chr2_1:11893038-11893057 | None:intergenic | 45.0% | |
| ! | AGCACTGGATTGAACGTTGT+TGG | - | chr2_1:11893236-11893255 | Msa0195150:CDS | 45.0% |
| CATCAAGTGGTAGCACAGCA+GGG | - | chr2_1:11893195-11893214 | Msa0195150:CDS | 50.0% | |
| CCTGCTGTGCTACCACTTGA+TGG | + | chr2_1:11893197-11893216 | None:intergenic | 55.0% | |
| CCATCAAGTGGTAGCACAGC+AGG | - | chr2_1:11893194-11893213 | Msa0195150:CDS | 55.0% | |
| GGTAGCACAGCAGGGTTCTT+AGG | - | chr2_1:11893203-11893222 | Msa0195150:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 11892945 | 11893358 | 11892945 | ID=Msa0195150;Name=Msa0195150 |
| chr2_1 | mRNA | 11892945 | 11893358 | 11892945 | ID=Msa0195150-mRNA-1;Parent=Msa0195150;Name=Msa0195150-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|137 |
| chr2_1 | exon | 11892945 | 11893358 | 11892945 | ID=Msa0195150-mRNA-1:exon:5226;Parent=Msa0195150-mRNA-1 |
| chr2_1 | CDS | 11892945 | 11893358 | 11892945 | ID=Msa0195150-mRNA-1:cds;Parent=Msa0195150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
