AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0873060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873060 MtrunA17_Chr6g0454281 87.709 179 20 1 3 181 4 180 8.08e-111 315
Msa0873060 MtrunA17_Chr6g0454331 83.429 175 29 0 7 181 5 179 5.00e-103 305
Msa0873060 MtrunA17_Chr6g0454251 78.286 175 36 1 7 181 5 177 5.17e-95 281
Msa0873060 MtrunA17_Chr6g0454401 73.333 180 47 1 2 181 3 181 3.50e-90 271
Msa0873060 MtrunA17_Chr6g0454291 80.000 175 33 1 7 181 5 177 3.28e-89 269
Msa0873060 MtrunA17_Chr6g0454211 81.143 175 31 1 7 181 295 467 4.52e-88 274
Msa0873060 MtrunA17_Chr6g0453951 69.945 183 51 2 1 181 47 227 2.30e-85 261
Msa0873060 MtrunA17_Chr6g0454351 72.571 175 46 1 7 181 10 182 6.10e-85 258
Msa0873060 MtrunA17_Chr6g0454191 70.857 175 50 1 7 181 8 181 1.22e-84 258
Msa0873060 MtrunA17_Chr6g0454181 67.039 179 57 1 3 181 4 180 1.06e-81 250
Msa0873060 MtrunA17_Chr6g0454231 67.778 180 53 2 2 181 243 417 7.52e-80 245
Msa0873060 MtrunA17_Chr7g0217881 71.751 177 47 2 1 176 1 175 1.32e-79 244
Msa0873060 MtrunA17_Chr6g0454361 72.571 175 46 1 7 181 9 181 3.20e-78 241
Msa0873060 MtrunA17_Chr6g0453961 65.922 179 59 1 3 181 13 189 2.02e-77 239
Msa0873060 MtrunA17_Chr3g0078841 65.922 179 56 2 3 181 4 177 2.25e-77 239
Msa0873060 MtrunA17_Chr6g0452771 69.364 173 51 1 3 175 4 174 3.06e-77 238
Msa0873060 MtrunA17_Chr6g0454301 69.274 179 50 2 3 181 257 430 5.51e-76 241
Msa0873060 MtrunA17_Chr8g0359821 65.363 179 58 2 3 181 4 178 6.37e-76 235
Msa0873060 MtrunA17_Chr6g0454341 63.128 179 61 2 3 181 4 177 1.55e-75 234
Msa0873060 MtrunA17_Chr6g0454261 63.128 179 64 1 3 181 4 180 7.05e-74 230
Msa0873060 MtrunA17_Chr6g0454141 61.453 179 67 1 3 181 4 180 1.34e-73 229
Msa0873060 MtrunA17_Chr6g0454151 66.480 179 58 1 3 181 4 180 3.10e-73 228
Msa0873060 MtrunA17_Chr6g0454321 63.687 179 60 2 3 181 4 177 3.91e-73 232
Msa0873060 MtrunA17_Chr6g0454321 78.512 121 24 1 7 127 502 620 1.05e-60 199
Msa0873060 MtrunA17_Chr8g0336271 60.894 179 64 3 3 181 4 176 4.03e-73 221
Msa0873060 MtrunA17_Chr8g0336331 60.894 179 64 3 3 181 4 176 5.09e-71 222
Msa0873060 MtrunA17_Chr6g0454201 70.286 175 50 1 7 181 9 181 1.56e-69 219
Msa0873060 MtrunA17_Chr6g0454131 64.045 178 61 1 3 180 4 178 5.83e-66 209
Msa0873060 MtrunA17_Chr6g0454121 64.162 173 59 1 3 175 4 173 3.17e-64 205
Msa0873060 MtrunA17_Chr5g0426411 55.233 172 69 3 6 176 9 173 2.87e-61 188
Msa0873060 MtrunA17_Chr5g0423981 69.630 135 39 1 7 141 8 140 3.07e-59 191
Msa0873060 MtrunA17_Chr3g0092641 55.621 169 67 3 8 175 11 172 1.62e-56 184
Msa0873060 MtrunA17_Chr5g0426431 54.023 174 72 3 9 181 12 178 1.98e-56 184
Msa0873060 MtrunA17_Chr2g0278711 51.685 178 76 2 4 181 6 173 6.03e-56 183
Msa0873060 MtrunA17_Chr3g0118751 49.419 172 80 2 7 178 4 168 1.05e-49 166
Msa0873060 MtrunA17_Chr3g0118671 50.296 169 77 2 7 175 4 165 6.67e-49 165
Msa0873060 MtrunA17_Chr3g0118691 48.538 171 81 2 7 177 13 176 1.60e-48 164
Msa0873060 MtrunA17_Chr3g0118771 47.674 172 83 2 7 178 19 183 5.07e-47 160
Msa0873060 MtrunA17_Chr3g0118711 46.512 172 85 2 7 178 11 175 1.53e-46 159
Msa0873060 MtrunA17_Chr3g0118701 47.337 169 82 2 7 175 13 174 2.57e-45 155
Msa0873060 MtrunA17_Chr3g0118661 43.429 175 92 2 7 181 11 178 7.44e-41 144
Msa0873060 MtrunA17_Chr4g0050341 46.154 169 86 2 7 175 17 180 4.03e-39 139
Msa0873060 MtrunA17_Chr8g0355011 68.657 67 21 0 115 181 38 104 2.15e-23 95.1
Msa0873060 MtrunA17_Chr3g0118731 40.323 124 67 2 61 184 28 144 5.74e-22 87.4
Msa0873060 MtrunA17_Chr3g0118741 62.500 56 21 0 6 61 3 58 2.00e-19 78.2
Msa0873060 MtrunA17_Chr3g0112771 35.542 166 87 5 11 175 14 160 3.91e-19 84.0
Msa0873060 MtrunA17_Chr6g0453941 65.079 63 16 2 1 61 1 59 5.57e-19 82.0
Msa0873060 MtrunA17_Chr7g0218831 29.412 170 106 4 8 177 5 160 7.48e-18 80.1
Msa0873060 MtrunA17_Chr7g0218811 31.361 169 103 3 8 176 14 169 1.60e-17 79.3
Msa0873060 MtrunA17_Chr7g0218821 31.250 176 105 4 8 176 4 170 5.86e-17 77.8
Msa0873060 MtrunA17_Chr3g0112761 30.303 165 96 5 11 175 10 155 7.29e-17 77.4
Msa0873060 MtrunA17_Chr7g0218841 29.412 170 106 4 8 177 5 160 1.30e-16 76.6
Msa0873060 MtrunA17_Chr6g0464881 28.902 173 101 4 8 173 10 167 1.35e-16 76.6
Msa0873060 MtrunA17_Chr4g0032331 34.132 167 93 4 11 175 10 161 8.95e-16 74.3
Msa0873060 MtrunA17_Chr5g0412131 26.667 180 108 4 8 180 11 173 1.87e-14 70.5
Msa0873060 MtrunA17_Chr7g0218791 24.725 182 120 4 8 181 4 176 1.18e-13 68.2
Msa0873060 MtrunA17_Chr5g0412101 24.731 186 116 4 8 186 11 179 2.00e-13 67.8
Msa0873060 MtrunA17_Chr6g0464921 27.742 155 97 3 8 162 10 149 7.68e-13 65.9
Msa0873060 MtrunA17_Chr5g0412111 27.222 180 114 5 5 180 1 167 9.63e-13 65.5
Msa0873060 MtrunA17_Chr6g0453981 56.000 50 22 0 132 181 1 50 3.66e-12 62.8
Msa0873060 MtrunA17_Chr6g0454381 58.000 50 21 0 132 181 1 50 4.06e-12 60.8
Msa0873060 MtrunA17_Chr7g0267931 67.568 37 11 1 14 49 25 61 6.19e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873060 AT1G22370.2 55.747 174 70 2 7 180 11 177 3.98e-60 194
Msa0873060 AT1G22340.1 53.977 176 74 2 6 181 10 178 1.57e-59 193
Msa0873060 AT1G22400.1 54.286 175 73 2 7 181 11 178 6.47e-59 191
Msa0873060 AT1G78270.1 52.222 180 79 2 7 186 11 183 3.34e-57 187
Msa0873060 AT1G22360.1 53.143 175 75 2 7 181 8 175 1.09e-56 186
Msa0873060 AT1G22360.2 53.143 175 75 2 7 181 8 175 1.14e-56 185
Msa0873060 AT1G22380.1 53.409 176 75 3 6 181 10 178 4.41e-56 184
Msa0873060 AT3G02100.1 35.632 174 99 6 7 176 11 175 1.26e-26 105
Msa0873060 AT5G59580.1 37.013 154 76 5 7 158 7 141 2.28e-19 85.1
Msa0873060 AT3G46670.1 34.659 176 90 7 6 175 3 159 2.62e-19 84.7
Msa0873060 AT5G05900.1 32.184 174 101 4 9 179 8 167 6.16e-19 84.0
Msa0873060 AT5G38010.1 35.714 168 90 4 11 175 12 164 8.33e-19 83.6
Msa0873060 AT3G46660.1 34.591 159 84 4 11 169 16 154 1.77e-18 82.4
Msa0873060 AT5G59590.1 37.342 158 75 6 5 158 6 143 2.12e-18 82.4
Msa0873060 AT5G05890.1 31.609 174 102 4 9 179 8 167 3.36e-18 81.6
Msa0873060 AT5G05880.1 30.994 171 103 4 9 179 8 163 8.91e-17 77.8
Msa0873060 AT5G05860.1 32.335 167 94 5 9 174 9 157 5.52e-16 75.5
Msa0873060 AT3G46650.1 34.132 167 87 5 7 171 8 153 5.74e-16 75.1
Msa0873060 AT3G46690.1 32.468 154 88 3 1 154 1 138 6.46e-16 75.1
Msa0873060 AT3G11340.1 30.000 170 97 5 7 175 7 155 1.32e-15 74.3
Msa0873060 AT5G05870.1 31.214 173 99 5 6 174 5 161 4.85e-15 72.8
Msa0873060 AT2G36970.1 30.233 172 103 4 7 170 8 170 7.74e-15 72.0
Msa0873060 AT3G46700.1 33.766 154 81 5 1 154 1 133 3.15e-14 70.5
Msa0873060 AT3G46720.1 32.075 159 81 4 1 154 1 137 4.41e-14 69.7
Msa0873060 AT3G46680.1 32.026 153 81 4 6 154 6 139 1.33e-13 68.6
Msa0873060 AT5G38040.1 32.515 163 84 6 18 175 19 160 1.71e-13 68.2
Msa0873060 AT2G26480.1 27.485 171 99 3 5 173 4 151 1.09e-12 65.9
Msa0873060 AT3G55700.1 29.480 173 95 6 11 175 10 163 1.53e-12 65.5
Msa0873060 AT3G21560.1 29.586 169 100 5 8 168 11 168 1.15e-11 62.8

Find 148 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTCTCCTACTGAATTTA+AGG 0.095191 6_1:-8695537 Msa0873060:five_prime_UTR
GATTGAATTGGATAATTATA+TGG 0.235785 6_1:-8695414 Msa0873060:exon
CATCTTTAAGTACAAATCTT+TGG 0.236383 6_1:-8696217 Msa0873060:five_prime_UTR
TTATCTGACAAACGGATATT+TGG 0.237096 6_1:-8696507 Msa0873060:five_prime_UTR
AGCTTAGCTAGTGTTATTAA+TGG 0.244758 6_1:+8693791 None:intergenic
AGGATTTGCCTGACTTTATA+AGG 0.257518 6_1:-8696439 Msa0873060:five_prime_UTR
GAGATAAAGCCAATATTTCT+TGG 0.257518 6_1:+8697226 None:intergenic
GCGAAACCATCAAGAGAATT+TGG 0.264896 6_1:+8693692 None:intergenic
TCTGTTGTTTATGTGAATTT+TGG 0.279492 6_1:-8696146 Msa0873060:five_prime_UTR
TCCACAGATCCAAGAAATAT+TGG 0.280513 6_1:-8697235 Msa0873060:five_prime_UTR
AAATTCAGTAGGAGAATTAA+TGG 0.283160 6_1:+8695541 None:intergenic
GCTAAGCTTCTTCACCTTAG+AGG 0.286050 6_1:-8693776 Msa0873060:CDS
AAGCTTCTTTCTTTCTTCAT+AGG 0.298386 6_1:-8693318 None:intergenic
AATTCTCCTACTGAATTTAA+GGG 0.305851 6_1:-8695536 Msa0873060:five_prime_UTR
GAATTGATGGTGGGAGAAAA+AGG 0.308923 6_1:-8695729 Msa0873060:five_prime_UTR
AGAACTTCCTACAACCTTTC+CGG 0.311030 6_1:-8696873 Msa0873060:five_prime_UTR
GTTTCAACAATGGATTGATA+TGG 0.324262 6_1:+8697103 None:intergenic
GCAAAACTACTTCACCTTAG+AGG 0.324350 6_1:-8697078 Msa0873060:five_prime_UTR
GAACTTCCTACAACCTTTCC+GGG 0.325689 6_1:-8696872 Msa0873060:five_prime_UTR
TTTAGTACATTGTTGGATAA+AGG 0.334818 6_1:-8696679 Msa0873060:five_prime_UTR
ATTTGCAATGAATGGGAGAT+TGG 0.344403 6_1:-8695804 Msa0873060:five_prime_UTR
ATCGTAGAATTTATCATTGA+AGG 0.350969 6_1:-8696395 Msa0873060:five_prime_UTR
AAAGGTCTCATACCACTAAA+AGG 0.351638 6_1:-8696661 Msa0873060:intron
AAAGGTGTCATACCACTAAA+AGG 0.353021 6_1:-8693353 Msa0873060:CDS
TTTAAACTAATGGATTGAAT+TGG 0.353685 6_1:-8695426 Msa0873060:five_prime_UTR
CTTAATGACTCTGCCACTTC+TGG 0.358626 6_1:-8693527 Msa0873060:CDS
TCAGAAACTATGCAAGTAAC+TGG 0.360472 6_1:+8696802 None:intergenic
GCTGGACTAAACAAAACAAC+TGG 0.365194 6_1:+8696733 None:intergenic
TCAGAAACTATGCAAGTAAC+TGG 0.367292 6_1:+8693494 None:intergenic
ATAGTCTGAAAGCTAAAATC+AGG 0.375202 6_1:+8696973 None:intergenic
ATTAGAGTTTGCTTGGGGTT+TGG 0.376179 6_1:-8696093 Msa0873060:five_prime_UTR
ATGTTGTGTTGGCCATTCTT+TGG 0.384970 6_1:-8695852 Msa0873060:five_prime_UTR
AGAGGTCCAAATTCTCTTGA+TGG 0.386775 6_1:-8693698 Msa0873060:CDS
ACTAAAGTGGACTGTATTCC+AGG 0.387617 6_1:-8696482 Msa0873060:five_prime_UTR
AGGTTATGTGAAAGCCTCTA+AGG 0.390826 6_1:+8693762 None:intergenic
GTAGATTTATTTGCAATGAA+TGG 0.392511 6_1:-8695812 Msa0873060:five_prime_UTR
GGGCCAATGGCATAAGTAGA+AGG 0.392802 6_1:+8696281 None:intergenic
AGTCGAAAGTTCTGCAATCC+TGG 0.394583 6_1:+8696464 None:intergenic
CTTAGGCCTGATCTTGTCAT+TGG 0.397286 6_1:-8696041 Msa0873060:five_prime_UTR
AAAACTATTAGAGTTTGCTT+GGG 0.398810 6_1:-8696099 Msa0873060:five_prime_UTR
ATATGTCCTTGAAGTGGATA+TGG 0.398841 6_1:+8693818 None:intergenic
AAGAATGAAATTTCAGATAG+AGG 0.408729 6_1:-8695990 Msa0873060:five_prime_UTR
AATTCTACGATCGAATCATT+TGG 0.410815 6_1:+8696407 None:intergenic
TAGATTTATTTGCAATGAAT+GGG 0.416950 6_1:-8695811 Msa0873060:five_prime_UTR
TTCCCTTCTACTTATGCCAT+TGG 0.418489 6_1:-8696284 Msa0873060:five_prime_UTR
AAGATACCAAGTGTCTTGAT+TGG 0.419804 6_1:-8696190 Msa0873060:five_prime_UTR
AGGTTATGTGAAATCCTCTA+AGG 0.427688 6_1:+8697064 None:intergenic
GCTGGACTAAAGAAAACAAC+AGG 0.432446 6_1:+8693425 None:intergenic
TCCGTTGGAGTTAAACCATC+TGG 0.437214 6_1:+8696949 None:intergenic
GAAGTTCGCGAAACGGTTGT+AGG 0.444704 6_1:+8693558 None:intergenic
GTATTGAACCATCCTTCAAT+TGG 0.448564 6_1:-8695936 Msa0873060:five_prime_UTR
GGTTCAATACTTGCTCTTGT+GGG 0.457586 6_1:+8695949 None:intergenic
CAGAGATGAGGTGGAGAAGT+TGG 0.458489 6_1:-8695757 Msa0873060:five_prime_UTR
CCATCACCATCACCATCAAC+TGG 0.459059 6_1:+8693632 None:intergenic
CTTAATGACTCTGCAACATC+TGG 0.459566 6_1:-8696835 Msa0873060:five_prime_UTR
GATGGTCTTACTCCAGTTGA+TGG 0.463260 6_1:-8693644 Msa0873060:CDS
TTGATTCCATATCCACTTCA+AGG 0.466911 6_1:-8693824 Msa0873060:CDS
TCTTGATTGGCTTGAATCAA+AGG 0.471398 6_1:-8696177 Msa0873060:five_prime_UTR
TCAGTAATCCTTATAAAGTC+AGG 0.472301 6_1:+8696431 None:intergenic
AAGATAAGAGACAAAAGATA+AGG 0.472547 6_1:+8697262 None:intergenic
GAACCGCCAATGACAAGATC+AGG 0.472867 6_1:+8696035 None:intergenic
GGATTGATATGGCCTTGAAC+TGG 0.477576 6_1:+8697114 None:intergenic
GAAGATCCCGGAAAGGTTGT+AGG 0.477862 6_1:+8696866 None:intergenic
AGGCCTGATCTTGTCATTGG+CGG 0.477893 6_1:-8696038 Msa0873060:five_prime_UTR
TCAACTGGAGTAAGACCATC+TGG 0.478101 6_1:+8693647 None:intergenic
TTTGCAATGAATGGGAGATT+GGG 0.479301 6_1:-8695803 Msa0873060:five_prime_UTR
GTCAAGAATCCACCAATTGA+AGG 0.479366 6_1:+8695924 None:intergenic
TCTTGTCATTGGCGGTTCCA+TGG 0.479634 6_1:-8696030 Msa0873060:five_prime_UTR
GCCAATATTTCTTGGATCTG+TGG 0.485287 6_1:+8697234 None:intergenic
AAGTTATGAGTTCATGATGA+TGG 0.485777 6_1:-8695475 Msa0873060:five_prime_UTR
CGGATATTTGGACACTAAAG+TGG 0.489337 6_1:-8696495 Msa0873060:five_prime_UTR
TTGAACCATCCTTCAATTGG+TGG 0.493739 6_1:-8695933 Msa0873060:five_prime_UTR
TTAATCCCATGTCCAGTTCA+AGG 0.494157 6_1:-8697126 Msa0873060:five_prime_UTR
GAAGTTGGTCAATGAATTGA+TGG 0.500986 6_1:-8695742 Msa0873060:five_prime_UTR
GTTGTCTGATCACCAAAGAA+TGG 0.501643 6_1:+8695840 None:intergenic
GTGGGCACCAACCCGCGATT+AGG 0.503563 6_1:+8695967 None:intergenic
TGGTTCAATACTTGCTCTTG+TGG 0.517078 6_1:+8695948 None:intergenic
GAATTTATCATTGAAGGCGC+AGG 0.522495 6_1:-8696389 Msa0873060:five_prime_UTR
TACTTCTGATGAACTTGAGA+AGG 0.523156 6_1:-8696333 Msa0873060:five_prime_UTR
CTAGCAAGAAGTTCGCGAAA+CGG 0.523165 6_1:+8693551 None:intergenic
AAACGTTTGTTCAAATCAAG+AGG 0.525641 6_1:-8697018 Msa0873060:five_prime_UTR
ATTGCAGAACTTTCGACTGA+AGG 0.525666 6_1:-8696459 Msa0873060:five_prime_UTR
GATAATTGAGATGAAGAAGA+AGG 0.531263 6_1:-8695688 Msa0873060:five_prime_UTR
TCCAGATGGTTTAACTCCAA+CGG 0.541629 6_1:-8696950 Msa0873060:five_prime_UTR
CTGGAGTGCCAATGTTGTGT+TGG 0.543796 6_1:-8695863 Msa0873060:five_prime_UTR
GTGTTTGAATGTTGAGCAAA+GGG 0.549275 6_1:+8697186 None:intergenic
GATGAGAGTTATCTGACAAA+CGG 0.550281 6_1:-8696515 Msa0873060:five_prime_UTR
ACAACTGAAAGCATATGTGC+TGG 0.554534 6_1:-8695882 Msa0873060:five_prime_UTR
TTCAAGCCAATCAAGACACT+TGG 0.557095 6_1:+8696184 None:intergenic
TAAGTCTAGCAAGAAGATCC+CGG 0.558096 6_1:+8696854 None:intergenic
TTGTACTTAAAGATGCTAAG+TGG 0.558301 6_1:+8696225 None:intergenic
CAATGACAAGATCAGGCCTA+AGG 0.563385 6_1:+8696042 None:intergenic
TCAGATAGAGGCCTAATCGC+GGG 0.564559 6_1:-8695978 Msa0873060:five_prime_UTR
TATCATTGAAGGCGCAGGAA+AGG 0.567465 6_1:-8696384 Msa0873060:five_prime_UTR
AAATGATGTTAAAGGGCCAA+TGG 0.568972 6_1:+8696268 None:intergenic
TGCTTCGAGACTATTCCAGA+TGG 0.572250 6_1:-8693662 Msa0873060:CDS
GATTCTTGACTCATTGTGGA+TGG 0.573721 6_1:-8695911 Msa0873060:five_prime_UTR
AGAGGTGAAAATGCCTTCGA+TGG 0.577354 6_1:-8697000 Msa0873060:five_prime_UTR
AGCTTTCAGACTATTCCAGA+TGG 0.577779 6_1:-8696964 Msa0873060:five_prime_UTR
TGGAGGTACAAGACCAGAAG+TGG 0.579292 6_1:+8693514 None:intergenic
CAATGAATGGGAGATTGGGA+TGG 0.579933 6_1:-8695799 Msa0873060:five_prime_UTR
CTTACTCCAGTTGATGGTGA+TGG 0.583506 6_1:-8693638 Msa0873060:CDS
CACCTCATCTCTGTTCACAT+TGG 0.585032 6_1:+8695767 None:intergenic
TGGTTGTTCATACATGAACT+TGG 0.585259 6_1:-8695643 Msa0873060:five_prime_UTR
CCAGTTGATGGTGATGGTGA+TGG 0.587222 6_1:-8693632 Msa0873060:CDS
GGTGGATTCTTGACTCATTG+TGG 0.591311 6_1:-8695915 Msa0873060:five_prime_UTR
AAGAATGGCCAACACAACAT+TGG 0.591327 6_1:+8695855 None:intergenic
TGTGTTTGAATGTTGAGCAA+AGG 0.591351 6_1:+8697185 None:intergenic
ACATCGCCATCACCATCCGT+TGG 0.595944 6_1:+8696934 None:intergenic
TTAACTCCAACGGATGGTGA+TGG 0.596638 6_1:-8696940 Msa0873060:five_prime_UTR
GGCCAATGGCATAAGTAGAA+GGG 0.596847 6_1:+8696282 None:intergenic
ATTGTATTCAGTGTTAACAA+AGG 0.597303 6_1:+8697044 None:intergenic
AGAATCCACCAATTGAAGGA+TGG 0.606785 6_1:+8695928 None:intergenic
CTGGACTAAACAAAACAACT+GGG 0.608317 6_1:+8696734 None:intergenic
TTCACATAAACAACAGACCT+CGG 0.608654 6_1:+8696152 None:intergenic
AAACGCTTGCTCAAATCAAG+AGG 0.611360 6_1:-8693716 Msa0873060:CDS
ACCAGGTCTCGTGTCTTCGT+CGG 0.613735 6_1:+8695665 None:intergenic
TTCAGATAGAGGCCTAATCG+CGG 0.614526 6_1:-8695979 Msa0873060:five_prime_UTR
CATCATCCCTTAAATTCAGT+AGG 0.614987 6_1:+8695530 None:intergenic
AAACTATTAGAGTTTGCTTG+GGG 0.622826 6_1:-8696098 Msa0873060:five_prime_UTR
TAGTCTGAAAGCTAAAATCA+GGG 0.624717 6_1:+8696974 None:intergenic
GCCGACGAAGACACGAGACC+TGG 0.626847 6_1:-8695666 Msa0873060:five_prime_UTR
GTTGGTCAATGAATTGATGG+TGG 0.628703 6_1:-8695739 Msa0873060:five_prime_UTR
TTCATGTATGAACAACCACC+AGG 0.629091 6_1:+8695648 None:intergenic
CATGGGATTAACACAGCATG+AGG 0.630220 6_1:+8697138 None:intergenic
CAATGTGAACAGAGATGAGG+TGG 0.635907 6_1:-8695766 Msa0873060:five_prime_UTR
TTACCTACACTGTTTGACAA+AGG 0.637443 6_1:-8693371 Msa0873060:CDS
GAAACTATGCAAGTAACTGG+AGG 0.640160 6_1:+8696805 None:intergenic
GTTGAGCAAAGGGAAGCCAA+TGG 0.640398 6_1:+8697196 None:intergenic
ATATGGCCTTGAACTGGACA+TGG 0.642941 6_1:+8697120 None:intergenic
AAACTCAGATGACAAAACCA+TGG 0.644316 6_1:+8696013 None:intergenic
ATAGAGGCCTAATCGCGGGT+TGG 0.645679 6_1:-8695974 Msa0873060:five_prime_UTR
ACACCTTTGTCAAACAGTGT+AGG 0.650584 6_1:+8693368 None:intergenic
TTGGTCAATGAATTGATGGT+GGG 0.653223 6_1:-8695738 Msa0873060:five_prime_UTR
GGAGTGATATGTCCTTGAAG+TGG 0.654022 6_1:+8693812 None:intergenic
TATGGAATCAACACTGCATG+TGG 0.659538 6_1:+8693836 None:intergenic
GATGGTTTAACTCCAACGGA+TGG 0.660312 6_1:-8696946 Msa0873060:five_prime_UTR
AAACTATGCAAGTAACTGGA+GGG 0.661646 6_1:+8696806 None:intergenic
TATGGCCTTGAACTGGACAT+GGG 0.664724 6_1:+8697121 None:intergenic
AAAATCAGGGAAACCATCGA+AGG 0.675397 6_1:+8696987 None:intergenic
ATTGTATTCAGTGTTGACAA+AGG 0.675767 6_1:+8693742 None:intergenic
GGCTTGAATCAAAGGAACCG+AGG 0.677482 6_1:-8696169 Msa0873060:five_prime_UTR
GACGAAGACACGAGACCTGG+TGG 0.685009 6_1:-8695663 Msa0873060:five_prime_UTR
CTAGCAAGAAGATCCCGGAA+AGG 0.686080 6_1:+8696859 None:intergenic
GAAACTATGCAAGTAACTGG+AGG 0.688520 6_1:+8693497 None:intergenic
CGCCAATGTGAACAGAGATG+AGG 0.705179 6_1:-8695769 Msa0873060:five_prime_UTR
CTGGACTAAAGAAAACAACA+GGG 0.710136 6_1:+8693426 None:intergenic
ATAAGTAGAAGGGAACGTAG+TGG 0.732920 6_1:+8696292 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATCAAATAGAAA+TGG - chr6_1:8695514-8695533 Msa0873060:five_prime_UTR 10.0%
!!! ACTAATTAATATTAATGTTT+TGG - chr6_1:8696250-8696269 Msa0873060:five_prime_UTR 10.0%
!! GATTTAAAAATGATGTTAAA+GGG + chr6_1:8694413-8694432 None:intergenic 15.0%
!! TGATTTAAAAATGATGTTAA+AGG + chr6_1:8694414-8694433 None:intergenic 15.0%
!! TTGCATAAAAAAATTAACTT+AGG + chr6_1:8695093-8695112 None:intergenic 15.0%
!! TAGAGTAAAATATTAACTTA+TGG + chr6_1:8695474-8695493 None:intergenic 15.0%
!!! TAACTAACATGATATTTTTA+TGG + chr6_1:8695749-8695768 None:intergenic 15.0%
!! ATTACTACAACTTATTTATA+TGG + chr6_1:8695827-8695846 None:intergenic 15.0%
!! ATCTAAATTAAATAATTGCA+TGG + chr6_1:8696469-8696488 None:intergenic 15.0%
!!! TAATCATTTTAGTACATTGT+TGG - chr6_1:8693985-8694004 Msa0873060:intron 20.0%
!! TAGATTTATTTGCAATGAAT+GGG - chr6_1:8694860-8694879 Msa0873060:intron 20.0%
!!! TGCAAGAATTTTTAAACTAA+TGG - chr6_1:8695235-8695254 Msa0873060:intron 20.0%
!!! TTTAAACTAATGGATTGAAT+TGG - chr6_1:8695245-8695264 Msa0873060:intron 20.0%
!! GATTGAATTGGATAATTATA+TGG - chr6_1:8695257-8695276 Msa0873060:intron 20.0%
!!! TAAATCTTGTTTAACATAGA+AGG + chr6_1:8695441-8695460 None:intergenic 20.0%
!!! GTTAATATTTTACTCTAACA+TGG - chr6_1:8695477-8695496 Msa0873060:five_prime_UTR 20.0%
!! ATAACTATATCAACATGTTT+CGG + chr6_1:8695604-8695623 None:intergenic 20.0%
!!! AAAAATTTGGTGATGAATAA+TGG + chr6_1:8696540-8696559 None:intergenic 20.0%
! AAGATAAGAGACAAAAGATA+AGG + chr6_1:8693412-8693431 None:intergenic 25.0%
!! CTTTATCTCTTTTAAACCAT+TGG - chr6_1:8693459-8693478 Msa0873060:CDS 25.0%
! ATTGTATTCAGTGTTAACAA+AGG + chr6_1:8693630-8693649 None:intergenic 25.0%
! TTTAGTACATTGTTGGATAA+AGG - chr6_1:8693992-8694011 Msa0873060:intron 25.0%
! GTGTTCATATGACATTTATT+TGG - chr6_1:8694083-8694102 Msa0873060:intron 25.0%
!! TATGACATTTATTTGGAGTA+TGG - chr6_1:8694090-8694109 Msa0873060:intron 25.0%
! ATCGTAGAATTTATCATTGA+AGG - chr6_1:8694276-8694295 Msa0873060:intron 25.0%
! CATCTTTAAGTACAAATCTT+TGG - chr6_1:8694454-8694473 Msa0873060:intron 25.0%
!!! TCTGTTGTTTATGTGAATTT+TGG - chr6_1:8694525-8694544 Msa0873060:intron 25.0%
!!! CTGTTGTTTATGTGAATTTT+GGG - chr6_1:8694526-8694545 Msa0873060:intron 25.0%
!! AAAAACTATTAGAGTTTGCT+TGG - chr6_1:8694571-8694590 Msa0873060:intron 25.0%
!! AAAACTATTAGAGTTTGCTT+GGG - chr6_1:8694572-8694591 Msa0873060:intron 25.0%
!!! TAAAAAATGTTGCTTGCTAT+TGG + chr6_1:8694604-8694623 None:intergenic 25.0%
!!! ATAGCAAGCAACATTTTTTA+TGG - chr6_1:8694604-8694623 Msa0873060:intron 25.0%
!!! AACATTTTTTATGGATCCTT+AGG - chr6_1:8694613-8694632 Msa0873060:intron 25.0%
! AAGAATGAAATTTCAGATAG+AGG - chr6_1:8694681-8694700 Msa0873060:intron 25.0%
! GTAGATTTATTTGCAATGAA+TGG - chr6_1:8694859-8694878 Msa0873060:intron 25.0%
! AAATTCAGTAGGAGAATTAA+TGG + chr6_1:8695133-8695152 None:intergenic 25.0%
! TAATTCTCCTACTGAATTTA+AGG - chr6_1:8695134-8695153 Msa0873060:intron 25.0%
! AATTCTCCTACTGAATTTAA+GGG - chr6_1:8695135-8695154 Msa0873060:intron 25.0%
!!! AGCTTTGAAATTTTGAAGTT+GGG - chr6_1:8695313-8695332 Msa0873060:intron 25.0%
!! TTTTCCATTACTAATGAGAT+CGG - chr6_1:8695852-8695871 Msa0873060:five_prime_UTR 25.0%
! GATTACTTAACAAACAAGAA+AGG - chr6_1:8695938-8695957 Msa0873060:five_prime_UTR 25.0%
! TCTTACGTATCATTATCAAT+AGG - chr6_1:8696132-8696151 Msa0873060:five_prime_UTR 25.0%
! CTTACGTATCATTATCAATA+GGG - chr6_1:8696133-8696152 Msa0873060:five_prime_UTR 25.0%
! AAACTGTCTCATTATTGTAA+GGG + chr6_1:8696411-8696430 None:intergenic 25.0%
! TAAACTGTCTCATTATTGTA+AGG + chr6_1:8696412-8696431 None:intergenic 25.0%
!! ACAGTTTAACTATCTTTTAG+TGG - chr6_1:8696424-8696443 Msa0873060:five_prime_UTR 25.0%
! TATGTAGCAGAAGAAAAATT+TGG + chr6_1:8696553-8696572 None:intergenic 25.0%
!! TTTTGGCATTATGATTAGAA+TGG - chr6_1:8696602-8696621 Msa0873060:intron 25.0%
! TTATACACCAATATCATTCT+TGG + chr6_1:8696711-8696730 None:intergenic 25.0%
!! ATTTGAGGTTTAGAGATAAA+GGG + chr6_1:8696757-8696776 None:intergenic 25.0%
!! AATTGATTGTTACCTTTTAG+TGG + chr6_1:8697333-8697352 None:intergenic 25.0%
GAGATAAAGCCAATATTTCT+TGG + chr6_1:8693448-8693467 None:intergenic 30.0%
!! GTTTCAACAATGGATTGATA+TGG + chr6_1:8693571-8693590 None:intergenic 30.0%
!! AGTTTTGCTAGTTTCAACAA+TGG + chr6_1:8693581-8693600 None:intergenic 30.0%
AAACGTTTGTTCAAATCAAG+AGG - chr6_1:8693653-8693672 Msa0873060:CDS 30.0%
TAGTCTGAAAGCTAAAATCA+GGG + chr6_1:8693700-8693719 None:intergenic 30.0%
ATAGTCTGAAAGCTAAAATC+AGG + chr6_1:8693701-8693720 None:intergenic 30.0%
AAAAATGTACATGCATTAGC+TGG + chr6_1:8693959-8693978 None:intergenic 30.0%
! GATTAATCGTTACCTTTTAG+TGG + chr6_1:8694025-8694044 None:intergenic 30.0%
TTATCTGACAAACGGATATT+TGG - chr6_1:8694164-8694183 Msa0873060:intron 30.0%
TCAGTAATCCTTATAAAGTC+AGG + chr6_1:8694243-8694262 None:intergenic 30.0%
AATTCTACGATCGAATCATT+TGG + chr6_1:8694267-8694286 None:intergenic 30.0%
TTGTACTTAAAGATGCTAAG+TGG + chr6_1:8694449-8694468 None:intergenic 30.0%
! AAACTATTAGAGTTTGCTTG+GGG - chr6_1:8694573-8694592 Msa0873060:intron 30.0%
GATAATTGAGATGAAGAAGA+AGG - chr6_1:8694983-8695002 Msa0873060:intron 30.0%
GAACTTGGAAAAAGTGATTA+AGG - chr6_1:8695043-8695062 Msa0873060:intron 30.0%
AAGTTATGAGTTCATGATGA+TGG - chr6_1:8695196-8695215 Msa0873060:intron 30.0%
!!! CAGCTTTGAAATTTTGAAGT+TGG - chr6_1:8695312-8695331 Msa0873060:intron 30.0%
!!! GCTTTGAAATTTTGAAGTTG+GGG - chr6_1:8695314-8695333 Msa0873060:intron 30.0%
TAATGGAATTCAAGATACTG+TGG + chr6_1:8695354-8695373 None:intergenic 30.0%
TGAATTCCATTATCATGTGA+AGG - chr6_1:8695362-8695381 Msa0873060:intron 30.0%
CTTTATCCTTCACATGATAA+TGG + chr6_1:8695371-8695390 None:intergenic 30.0%
ATCATGTGAAGGATAAAGTA+AGG - chr6_1:8695373-8695392 Msa0873060:intron 30.0%
TAGAAATGGTAAGCTTACTT+AGG - chr6_1:8695528-8695547 Msa0873060:five_prime_UTR 30.0%
! CACAAACTTAAATGTGCTTT+TGG + chr6_1:8696078-8696097 None:intergenic 30.0%
!! ATAGAACACTTTTTATGCGA+CGG - chr6_1:8696343-8696362 Msa0873060:five_prime_UTR 30.0%
! ATCTTTTAGTGGTCACATAT+TGG - chr6_1:8696435-8696454 Msa0873060:five_prime_UTR 30.0%
ATTAAGTCCTCCAACATTAT+TGG - chr6_1:8696497-8696516 Msa0873060:five_prime_UTR 30.0%
GATGAATAATGGCAATCATT+AGG + chr6_1:8696529-8696548 None:intergenic 30.0%
!!! CTGTCACATGATATGTTTTT+TGG - chr6_1:8696585-8696604 Msa0873060:intron 30.0%
GCATTATGATTAGAATGGTT+AGG - chr6_1:8696607-8696626 Msa0873060:intron 30.0%
TATGATTAGAATGGTTAGGT+AGG - chr6_1:8696611-8696630 Msa0873060:intron 30.0%
! GATTTGAGGTTTAGAGATAA+AGG + chr6_1:8696758-8696777 None:intergenic 30.0%
ATGAGTATGTGTATGATTTG+AGG + chr6_1:8696772-8696791 None:intergenic 30.0%
! AGCTTAGCTAGTGTTATTAA+TGG + chr6_1:8696883-8696902 None:intergenic 30.0%
!! ATTGTATTCAGTGTTGACAA+AGG + chr6_1:8696932-8696951 None:intergenic 30.0%
TCCACAGATCCAAGAAATAT+TGG - chr6_1:8693436-8693455 Msa0873060:CDS 35.0%
GTGTTTGAATGTTGAGCAAA+GGG + chr6_1:8693488-8693507 None:intergenic 35.0%
TGTGTTTGAATGTTGAGCAA+AGG + chr6_1:8693489-8693508 None:intergenic 35.0%
AGGTTATGTGAAATCCTCTA+AGG + chr6_1:8693610-8693629 None:intergenic 35.0%
AAACTATGCAAGTAACTGGA+GGG + chr6_1:8693868-8693887 None:intergenic 35.0%
TCAGAAACTATGCAAGTAAC+TGG + chr6_1:8693872-8693891 None:intergenic 35.0%
CTGGACTAAACAAAACAACT+GGG + chr6_1:8693940-8693959 None:intergenic 35.0%
AAAGGTCTCATACCACTAAA+AGG - chr6_1:8694010-8694029 Msa0873060:intron 35.0%
GATGAGAGTTATCTGACAAA+CGG - chr6_1:8694156-8694175 Msa0873060:intron 35.0%
AGGATTTGCCTGACTTTATA+AGG - chr6_1:8694232-8694251 Msa0873060:intron 35.0%
TACTTCTGATGAACTTGAGA+AGG - chr6_1:8694338-8694357 Msa0873060:intron 35.0%
AAATGATGTTAAAGGGCCAA+TGG + chr6_1:8694406-8694425 None:intergenic 35.0%
!! AAAGATGCTAAGTGGTTTTG+TGG + chr6_1:8694441-8694460 None:intergenic 35.0%
AAGATACCAAGTGTCTTGAT+TGG - chr6_1:8694481-8694500 Msa0873060:intron 35.0%
!! TCTTGATTGGCTTGAATCAA+AGG - chr6_1:8694494-8694513 Msa0873060:intron 35.0%
TTCACATAAACAACAGACCT+CGG + chr6_1:8694522-8694541 None:intergenic 35.0%
AAACTCAGATGACAAAACCA+TGG + chr6_1:8694661-8694680 None:intergenic 35.0%
GTATTGAACCATCCTTCAAT+TGG - chr6_1:8694735-8694754 Msa0873060:intron 35.0%
ATTTGCAATGAATGGGAGAT+TGG - chr6_1:8694867-8694886 Msa0873060:intron 35.0%
TTTGCAATGAATGGGAGATT+GGG - chr6_1:8694868-8694887 Msa0873060:intron 35.0%
! GAAGTTGGTCAATGAATTGA+TGG - chr6_1:8694929-8694948 Msa0873060:intron 35.0%
! TTGGTCAATGAATTGATGGT+GGG - chr6_1:8694933-8694952 Msa0873060:intron 35.0%
GAGAAAAAGGAAAGAAGATG+AGG - chr6_1:8694955-8694974 Msa0873060:intron 35.0%
TGGTTGTTCATACATGAACT+TGG - chr6_1:8695028-8695047 Msa0873060:intron 35.0%
CTTGGAAAAAGTGATTAAGG+AGG - chr6_1:8695046-8695065 Msa0873060:intron 35.0%
CATCATCCCTTAAATTCAGT+AGG + chr6_1:8695144-8695163 None:intergenic 35.0%
!! AATCATTTTGCTGTGTGTTC+AGG - chr6_1:8695402-8695421 Msa0873060:intron 35.0%
GGTAAGCTTACTTAGGTTTA+AGG - chr6_1:8695535-8695554 Msa0873060:five_prime_UTR 35.0%
CAAACCGATCTCATTAGTAA+TGG + chr6_1:8695859-8695878 None:intergenic 35.0%
TCAATAGGGTCATACTAAGT+TGG - chr6_1:8696147-8696166 Msa0873060:five_prime_UTR 35.0%
CAATAGGGTCATACTAAGTT+GGG - chr6_1:8696148-8696167 Msa0873060:five_prime_UTR 35.0%
TGGCATTATGACATGTTTGT+TGG - chr6_1:8696642-8696661 Msa0873060:intron 35.0%
ACCAATATCATTCTTGGCTA+GGG + chr6_1:8696705-8696724 None:intergenic 35.0%
TTGATTCCATATCCACTTCA+AGG - chr6_1:8696847-8696866 Msa0873060:five_prime_UTR 35.0%
ATATGTCCTTGAAGTGGATA+TGG + chr6_1:8696856-8696875 None:intergenic 35.0%
TCAGAAACTATGCAAGTAAC+TGG + chr6_1:8693872-8693891 None:intergenic 35.0%
CTGGACTAAAGAAAACAACA+GGG + chr6_1:8697248-8697267 None:intergenic 35.0%
AGTCAAAAACATACATGCAC+TGG + chr6_1:8697271-8697290 None:intergenic 35.0%
!! AGTGCATGTATGTTTTTGAC+TGG - chr6_1:8697270-8697289 Msa0873060:five_prime_UTR 35.0%
TTACCTACACTGTTTGACAA+AGG - chr6_1:8697300-8697319 Msa0873060:five_prime_UTR 35.0%
!! AAAGGTGTCATACCACTAAA+AGG - chr6_1:8697318-8697337 Msa0873060:five_prime_UTR 35.0%
GCCAATATTTCTTGGATCTG+TGG + chr6_1:8693440-8693459 None:intergenic 40.0%
TTAATCCCATGTCCAGTTCA+AGG - chr6_1:8693545-8693564 Msa0873060:CDS 40.0%
GCAAAACTACTTCACCTTAG+AGG - chr6_1:8693593-8693612 Msa0873060:CDS 40.0%
AAAATCAGGGAAACCATCGA+AGG + chr6_1:8693687-8693706 None:intergenic 40.0%
AGCTTTCAGACTATTCCAGA+TGG - chr6_1:8693707-8693726 Msa0873060:CDS 40.0%
TCCAGATGGTTTAACTCCAA+CGG - chr6_1:8693721-8693740 Msa0873060:CDS 40.0%
AGAACTTCCTACAACCTTTC+CGG - chr6_1:8693798-8693817 Msa0873060:CDS 40.0%
TAAGTCTAGCAAGAAGATCC+CGG + chr6_1:8693820-8693839 None:intergenic 40.0%
CTTAATGACTCTGCAACATC+TGG - chr6_1:8693836-8693855 Msa0873060:CDS 40.0%
GAAACTATGCAAGTAACTGG+AGG + chr6_1:8693869-8693888 None:intergenic 40.0%
GCTGGACTAAACAAAACAAC+TGG + chr6_1:8693941-8693960 None:intergenic 40.0%
CGGATATTTGGACACTAAAG+TGG - chr6_1:8694176-8694195 Msa0873060:intron 40.0%
!! ACTAAAGTGGACTGTATTCC+AGG - chr6_1:8694189-8694208 Msa0873060:intron 40.0%
ATTGCAGAACTTTCGACTGA+AGG - chr6_1:8694212-8694231 Msa0873060:intron 40.0%
! GAATTTATCATTGAAGGCGC+AGG - chr6_1:8694282-8694301 Msa0873060:intron 40.0%
ATAAGTAGAAGGGAACGTAG+TGG + chr6_1:8694382-8694401 None:intergenic 40.0%
TTCCCTTCTACTTATGCCAT+TGG - chr6_1:8694387-8694406 Msa0873060:intron 40.0%
TTCAAGCCAATCAAGACACT+TGG + chr6_1:8694490-8694509 None:intergenic 40.0%
! ATTAGAGTTTGCTTGGGGTT+TGG - chr6_1:8694578-8694597 Msa0873060:intron 40.0%
GGTTCAATACTTGCTCTTGT+GGG + chr6_1:8694725-8694744 None:intergenic 40.0%
TGGTTCAATACTTGCTCTTG+TGG + chr6_1:8694726-8694745 None:intergenic 40.0%
TTGAACCATCCTTCAATTGG+TGG - chr6_1:8694738-8694757 Msa0873060:intron 40.0%
AGAATCCACCAATTGAAGGA+TGG + chr6_1:8694746-8694765 None:intergenic 40.0%
GTCAAGAATCCACCAATTGA+AGG + chr6_1:8694750-8694769 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG - chr6_1:8694760-8694779 Msa0873060:intron 40.0%
! ACAACTGAAAGCATATGTGC+TGG - chr6_1:8694789-8694808 Msa0873060:intron 40.0%
AAGAATGGCCAACACAACAT+TGG + chr6_1:8694819-8694838 None:intergenic 40.0%
! ATGTTGTGTTGGCCATTCTT+TGG - chr6_1:8694819-8694838 Msa0873060:intron 40.0%
GTTGTCTGATCACCAAAGAA+TGG + chr6_1:8694834-8694853 None:intergenic 40.0%
GTTGGTCAATGAATTGATGG+TGG - chr6_1:8694932-8694951 Msa0873060:intron 40.0%
!! GAATTGATGGTGGGAGAAAA+AGG - chr6_1:8694942-8694961 Msa0873060:intron 40.0%
TTCATGTATGAACAACCACC+AGG + chr6_1:8695026-8695045 None:intergenic 40.0%
!!! ATTTTGAAGTTGGGGTAGTG+AGG - chr6_1:8695322-8695341 Msa0873060:intron 40.0%
!! AACACTTTTTATGCGACGGA+CGG - chr6_1:8696347-8696366 Msa0873060:five_prime_UTR 40.0%
TAGGCTGTGACCAATAATGT+TGG + chr6_1:8696510-8696529 None:intergenic 40.0%
TGGTTAGGTAGGTGTATTGT+TGG - chr6_1:8696622-8696641 Msa0873060:intron 40.0%
AATATCATTCTTGGCTAGGG+TGG + chr6_1:8696702-8696721 None:intergenic 40.0%
ACCCTAGCCAAGAATGATAT+TGG - chr6_1:8696701-8696720 Msa0873060:five_prime_UTR 40.0%
CACCAATATCATTCTTGGCT+AGG + chr6_1:8696706-8696725 None:intergenic 40.0%
TATGGAATCAACACTGCATG+TGG + chr6_1:8696838-8696857 None:intergenic 40.0%
AGGTTATGTGAAAGCCTCTA+AGG + chr6_1:8696912-8696931 None:intergenic 40.0%
AAACGCTTGCTCAAATCAAG+AGG - chr6_1:8696955-8696974 Msa0873060:five_prime_UTR 40.0%
AGAGGTCCAAATTCTCTTGA+TGG - chr6_1:8696973-8696992 Msa0873060:five_prime_UTR 40.0%
GCGAAACCATCAAGAGAATT+TGG + chr6_1:8696982-8697001 None:intergenic 40.0%
GAAACTATGCAAGTAACTGG+AGG + chr6_1:8693869-8693888 None:intergenic 40.0%
GCTGGACTAAAGAAAACAAC+AGG + chr6_1:8697249-8697268 None:intergenic 40.0%
! AAAAACATACATGCACTGGC+TGG + chr6_1:8697267-8697286 None:intergenic 40.0%
ACACCTTTGTCAAACAGTGT+AGG + chr6_1:8697306-8697325 None:intergenic 40.0%
CATGGGATTAACACAGCATG+AGG + chr6_1:8693536-8693555 None:intergenic 45.0%
! TATGGCCTTGAACTGGACAT+GGG + chr6_1:8693553-8693572 None:intergenic 45.0%
! ATATGGCCTTGAACTGGACA+TGG + chr6_1:8693554-8693573 None:intergenic 45.0%
! GGATTGATATGGCCTTGAAC+TGG + chr6_1:8693560-8693579 None:intergenic 45.0%
AGAGGTGAAAATGCCTTCGA+TGG - chr6_1:8693671-8693690 Msa0873060:CDS 45.0%
TCCGTTGGAGTTAAACCATC+TGG + chr6_1:8693725-8693744 None:intergenic 45.0%
GATGGTTTAACTCCAACGGA+TGG - chr6_1:8693725-8693744 Msa0873060:CDS 45.0%
TTAACTCCAACGGATGGTGA+TGG - chr6_1:8693731-8693750 Msa0873060:CDS 45.0%
GAACTTCCTACAACCTTTCC+GGG - chr6_1:8693799-8693818 Msa0873060:CDS 45.0%
AGTCGAAAGTTCTGCAATCC+TGG + chr6_1:8694210-8694229 None:intergenic 45.0%
! TATCATTGAAGGCGCAGGAA+AGG - chr6_1:8694287-8694306 Msa0873060:intron 45.0%
GGCCAATGGCATAAGTAGAA+GGG + chr6_1:8694392-8694411 None:intergenic 45.0%
CAATGACAAGATCAGGCCTA+AGG + chr6_1:8694632-8694651 None:intergenic 45.0%
CTTAGGCCTGATCTTGTCAT+TGG - chr6_1:8694630-8694649 Msa0873060:intron 45.0%
TTCAGATAGAGGCCTAATCG+CGG - chr6_1:8694692-8694711 Msa0873060:intron 45.0%
! GGTGGATTCTTGACTCATTG+TGG - chr6_1:8694756-8694775 Msa0873060:intron 45.0%
CAATGAATGGGAGATTGGGA+TGG - chr6_1:8694872-8694891 Msa0873060:intron 45.0%
CACCTCATCTCTGTTCACAT+TGG + chr6_1:8694907-8694926 None:intergenic 45.0%
CAATGTGAACAGAGATGAGG+TGG - chr6_1:8694905-8694924 Msa0873060:intron 45.0%
GCTGTGACCAATAATGTTGG+AGG + chr6_1:8696507-8696526 None:intergenic 45.0%
GGAGTGATATGTCCTTGAAG+TGG + chr6_1:8696862-8696881 None:intergenic 45.0%
GCTAAGCTTCTTCACCTTAG+AGG - chr6_1:8696895-8696914 Msa0873060:five_prime_UTR 45.0%
TGCTTCGAGACTATTCCAGA+TGG - chr6_1:8697009-8697028 Msa0873060:five_prime_UTR 45.0%
TCAACTGGAGTAAGACCATC+TGG + chr6_1:8697027-8697046 None:intergenic 45.0%
! GATGGTCTTACTCCAGTTGA+TGG - chr6_1:8697027-8697046 Msa0873060:five_prime_UTR 45.0%
!! CTTACTCCAGTTGATGGTGA+TGG - chr6_1:8697033-8697052 Msa0873060:five_prime_UTR 45.0%
CTAGCAAGAAGTTCGCGAAA+CGG + chr6_1:8697123-8697142 None:intergenic 45.0%
! CTTAATGACTCTGCCACTTC+TGG - chr6_1:8697144-8697163 Msa0873060:five_prime_UTR 45.0%
GTTGAGCAAAGGGAAGCCAA+TGG + chr6_1:8693478-8693497 None:intergenic 50.0%
GAAGATCCCGGAAAGGTTGT+AGG + chr6_1:8693808-8693827 None:intergenic 50.0%
CTAGCAAGAAGATCCCGGAA+AGG + chr6_1:8693815-8693834 None:intergenic 50.0%
GGGCCAATGGCATAAGTAGA+AGG + chr6_1:8694393-8694412 None:intergenic 50.0%
GGCTTGAATCAAAGGAACCG+AGG - chr6_1:8694502-8694521 Msa0873060:intron 50.0%
AGGCCTGATCTTGTCATTGG+CGG - chr6_1:8694633-8694652 Msa0873060:intron 50.0%
GAACCGCCAATGACAAGATC+AGG + chr6_1:8694639-8694658 None:intergenic 50.0%
TCTTGTCATTGGCGGTTCCA+TGG - chr6_1:8694641-8694660 Msa0873060:intron 50.0%
TCAGATAGAGGCCTAATCGC+GGG - chr6_1:8694693-8694712 Msa0873060:intron 50.0%
! CTGGAGTGCCAATGTTGTGT+TGG - chr6_1:8694808-8694827 Msa0873060:intron 50.0%
CGCCAATGTGAACAGAGATG+AGG - chr6_1:8694902-8694921 Msa0873060:intron 50.0%
CAGAGATGAGGTGGAGAAGT+TGG - chr6_1:8694914-8694933 Msa0873060:intron 50.0%
!! GATCCTTAGCTTGTGCGCTA+AGG + chr6_1:8696175-8696194 None:intergenic 50.0%
CCATCACCATCACCATCAAC+TGG + chr6_1:8697042-8697061 None:intergenic 50.0%
!! CCAGTTGATGGTGATGGTGA+TGG - chr6_1:8697039-8697058 Msa0873060:five_prime_UTR 50.0%
GAAGTTCGCGAAACGGTTGT+AGG + chr6_1:8697116-8697135 None:intergenic 50.0%
! TGGAGGTACAAGACCAGAAG+TGG + chr6_1:8697160-8697179 None:intergenic 50.0%
ACATCGCCATCACCATCCGT+TGG + chr6_1:8693740-8693759 None:intergenic 55.0%
ATAGAGGCCTAATCGCGGGT+TGG - chr6_1:8694697-8694716 Msa0873060:intron 55.0%
ACCAGGTCTCGTGTCTTCGT+CGG + chr6_1:8695009-8695028 None:intergenic 55.0%
GGACCTTAGCGCACAAGCTA+AGG - chr6_1:8696169-8696188 Msa0873060:five_prime_UTR 55.0%
GACGAAGACACGAGACCTGG+TGG - chr6_1:8695008-8695027 Msa0873060:intron 60.0%
GTGGGCACCAACCCGCGATT+AGG + chr6_1:8694707-8694726 None:intergenic 65.0%
GCCGACGAAGACACGAGACC+TGG - chr6_1:8695005-8695024 Msa0873060:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 8693319 8697374 8693319 ID=Msa0873060;Name=Msa0873060
chr6_1 mRNA 8693319 8697374 8693319 ID=Msa0873060-mRNA-1;Parent=Msa0873060;Name=Msa0873060-mRNA-1;_AED=0.19;_eAED=0.19;_QI=1832|0.25|0.2|0.6|1|0.8|5|0|186
chr6_1 exon 8693319 8693858 8693319 ID=Msa0873060-mRNA-1:exon:2659;Parent=Msa0873060-mRNA-1
chr6_1 exon 8695304 8695309 8695304 ID=Msa0873060-mRNA-1:exon:2658;Parent=Msa0873060-mRNA-1
chr6_1 exon 8695355 8695362 8695355 ID=Msa0873060-mRNA-1:exon:2657;Parent=Msa0873060-mRNA-1
chr6_1 exon 8695411 8696536 8695411 ID=Msa0873060-mRNA-1:exon:2656;Parent=Msa0873060-mRNA-1
chr6_1 exon 8696662 8697374 8696662 ID=Msa0873060-mRNA-1:exon:2655;Parent=Msa0873060-mRNA-1
chr6_1 five_prime_UTR 8696662 8697374 8696662 ID=Msa0873060-mRNA-1:five_prime_utr;Parent=Msa0873060-mRNA-1
chr6_1 five_prime_UTR 8695418 8696536 8695418 ID=Msa0873060-mRNA-1:five_prime_utr;Parent=Msa0873060-mRNA-1
chr6_1 CDS 8695411 8695417 8695411 ID=Msa0873060-mRNA-1:cds;Parent=Msa0873060-mRNA-1
chr6_1 CDS 8695355 8695362 8695355 ID=Msa0873060-mRNA-1:cds;Parent=Msa0873060-mRNA-1
chr6_1 CDS 8695304 8695309 8695304 ID=Msa0873060-mRNA-1:cds;Parent=Msa0873060-mRNA-1
chr6_1 CDS 8693319 8693858 8693319 ID=Msa0873060-mRNA-1:cds;Parent=Msa0873060-mRNA-1
Gene Sequence

>Msa0873060

ATGGCATTTGGGGTAGATAAACCACATGCAGTGTTGATTCCATATCCACTTCAAGGACATATCACTCCATTAATAACACTAGCTAAGCTTCTTCACCTTAGAGGCTTTCACATAACCTTTGTCAACACTGAATACAATCACAAACGCTTGCTCAAATCAAGAGGTCCAAATTCTCTTGATGGTTTCGCTGATTTTTGCTTCGAGACTATTCCAGATGGTCTTACTCCAGTTGATGGTGATGGTGATGGCGATGTTAGTCAAGACATAAATGCTCTTTGTGAATCAATCAGAAAGAACTTCCTACAACCGTTTCGCGAACTTCTTGCTAGACTTAATGACTCTGCCACTTCTGGTCTTGTACCTCCAGTTACTTGCATAGTTTCTGATAATAGCATGTATTTTACTATACAAGCTGCTGAAGAACTTTCAATCCCTGTTGTTTTCTTTAGTCCAGCCAGTGCATGTATGTTTTTGACTGGTTTTCACTTACCTACACTGTTTGACAAAGGTGTCATACCACTAAAAGGTAACAATCAATTAAGCTTCTTTCTTTCTTCATAG
Protein sequence

>Msa0873060

MAFGVDKPHAVLIPYPLQGHITPLITLAKLLHLRGFHITFVNTEYNHKRLLKSRGPNSLDGFADFCFETIPDGLTPVDGDGDGDVSQDINALCESIRKNFLQPFRELLARLNDSATSGLVPPVTCIVSDNSMYFTIQAAEELSIPVVFFSPASACMFLTGFHLPTLFDKGVIPLKGNNQLSFFLSS*