AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854190 MtrunA17_Chr5g0431451 81.324 423 50 4 3 420 2 400 0.0 660
Msa0854190 MtrunA17_Chr7g0214541 34.366 355 174 12 63 406 49 355 1.77e-42 154
Msa0854190 MtrunA17_Chr8g0365721 30.946 349 194 9 54 396 60 367 4.59e-41 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854190 AT1G07010.1 55.319 423 147 6 3 419 2 388 8.94e-154 441
Msa0854190 AT1G07010.2 54.846 423 145 7 3 419 2 384 2.78e-149 429
Msa0854190 AT1G07010.3 53.456 434 149 9 3 419 2 399 1.79e-144 417
Msa0854190 AT1G18480.1 33.524 349 184 11 72 413 56 363 7.22e-46 163

Find 140 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGCTTTGTCTAGGTAAA+TGG 0.194308 5_4:+46454953 Msa0854190:intron
TTACCTCTGGTCTTGAATTA+AGG 0.203062 5_4:-46456877 None:intergenic
AGCAACATCGGCAAATTTAT+TGG 0.203626 5_4:+46458346 Msa0854190:three_prime_UTR
TTGAAACCTATTGTTGTTAT+TGG 0.205083 5_4:+46452828 Msa0854190:CDS
AATCCTTTGAACTGCCAAAA+TGG 0.210861 5_4:-46458441 None:intergenic
GAAAGGTGGAGCTGTGTTTC+AGG 0.223980 5_4:+46454411 Msa0854190:CDS
CTCAAACTGTTGGGGTAAAT+TGG 0.237790 5_4:+46456581 Msa0854190:CDS
CTCCAGCAGCAGACCCATTT+TGG 0.240709 5_4:+46458427 Msa0854190:three_prime_UTR
GATTTCAGATATGTTGATTC+TGG 0.255499 5_4:+46455004 Msa0854190:CDS
AAGAATAAAGGTGGGAAAAT+AGG 0.260313 5_4:+46458573 Msa0854190:three_prime_UTR
TGATGAATGTAGTGATTTCT+TGG 0.278304 5_4:+46455033 Msa0854190:CDS
CAGAAAATGAAGAGACAAAA+AGG 0.343519 5_4:-46455908 None:intergenic
GCAAGCAAGTGAAGTTTATA+AGG 0.344021 5_4:-46458697 None:intergenic
AAGAGACTCACCAGATTTGA+TGG 0.344529 5_4:+46456070 Msa0854190:CDS
TAGTGGCAATGAAAGGAATT+TGG 0.346079 5_4:-46456010 None:intergenic
TTGCCCGATCAATCCTCTTT+CGG 0.346959 5_4:+46455459 Msa0854190:CDS
AATTGAGAACAAATATTAGT+TGG 0.349729 5_4:-46458744 None:intergenic
GAAATCCCCTTCCACATTCA+TGG 0.358343 5_4:-46454987 None:intergenic
CCTGTCCTTGCTGCGATCAT+TGG 0.382520 5_4:+46454372 Msa0854190:CDS
CTTTCGGCCTGGTGGGCCAC+TGG 0.385890 5_4:+46455475 Msa0854190:CDS
ACGATAAAGCCAGAGTTATA+AGG 0.389283 5_4:+46456998 Msa0854190:CDS
GATGGATTATGAGGCTAAAC+AGG 0.389943 5_4:+46456088 Msa0854190:CDS
GTCGAAAGCAAGGTGAAAAT+AGG 0.390834 5_4:+46458544 Msa0854190:three_prime_UTR
AAGGCTATTGTGATTATTGT+TGG 0.394236 5_4:-46452787 None:intergenic
AACAAAGTCAAGAAGTCATT+GGG 0.395929 5_4:+46455138 Msa0854190:CDS
CAATTTACCCCAACAGTTTG+AGG 0.402208 5_4:-46456580 None:intergenic
AATAGGATGCACAAGAATAA+AGG 0.403439 5_4:+46458561 Msa0854190:three_prime_UTR
GACATACTCCTCAAACTGTT+GGG 0.404387 5_4:+46456572 Msa0854190:CDS
GGGGTTATGACAGTGTTGTT+TGG 0.412400 5_4:+46456033 Msa0854190:CDS
GCCTCATAATCCATCAAATC+TGG 0.415124 5_4:-46456080 None:intergenic
CTTCCACATTCATGGTCTCA+TGG 0.416944 5_4:-46454979 None:intergenic
AGACAAACAAAAGATGTAAC+AGG 0.418756 5_4:+46457070 Msa0854190:three_prime_UTR
ACCAGATTTGATGGATTATG+AGG 0.427587 5_4:+46456079 Msa0854190:CDS
ATGACAGTGTTGTTTGGAAT+CGG 0.427904 5_4:+46456039 Msa0854190:CDS
AAAATAACGAGAAAATTTAG+AGG 0.429813 5_4:-46452599 None:intergenic
GGGTCACCAATAACAACAAT+AGG 0.432348 5_4:-46452834 None:intergenic
ATTGAGAACAAATATTAGTT+GGG 0.432493 5_4:-46458743 None:intergenic
TGCCAAAATGGGTCTGCTGC+TGG 0.433872 5_4:-46458429 None:intergenic
CACTGGCGTGTGAGCTTGCA+AGG 0.436226 5_4:+46455492 Msa0854190:CDS
ATCCTTTGAACTGCCAAAAT+GGG 0.442447 5_4:-46458440 None:intergenic
TTTCTCTAATTTCAGAAGCC+TGG 0.442448 5_4:+46455870 Msa0854190:intron
AGCTAGATATGCACTTGAAA+TGG 0.443839 5_4:+46453850 Msa0854190:CDS
ATTATTACAATTATATTGAC+TGG 0.446445 5_4:+46458643 Msa0854190:three_prime_UTR
TCAATAATTCTGAAGATGAC+TGG 0.446589 5_4:+46455062 Msa0854190:CDS
GGAAGAAACATTTACCGGTT+GGG 0.451567 5_4:+46455084 Msa0854190:CDS
GTAAATACAATTGCAGCATA+TGG 0.452563 5_4:+46456825 Msa0854190:intron
TTGCAGAATTGCGGGCATAC+AGG 0.453904 5_4:+46458316 Msa0854190:intron
GAACAAAGTCAAGAAGTCAT+TGG 0.454433 5_4:+46455137 Msa0854190:CDS
GACTGGGAAGAAACATTTAC+CGG 0.465497 5_4:+46455079 Msa0854190:CDS
CGATCAATCCTCTTTCGGCC+TGG 0.470126 5_4:+46455464 Msa0854190:CDS
GCTGGTGTGTTGAGCTCTGA+TGG 0.477454 5_4:+46453872 Msa0854190:CDS
AGGTGGGAAAATAGGAAAGA+TGG 0.477554 5_4:+46458581 Msa0854190:three_prime_UTR
CAAGAAGTCATTGGGGACCT+TGG 0.485464 5_4:+46455146 Msa0854190:CDS
TAGTGATACAATTTGAAGAC+AGG 0.487127 5_4:+46458480 Msa0854190:three_prime_UTR
CTCAGATACATCAACCCAAC+CGG 0.488269 5_4:-46455098 None:intergenic
CCTGGTCGCACTATTCTCGC+TGG 0.489201 5_4:+46452876 Msa0854190:CDS
GGTGGGAAAATAGGAAAGAT+GGG 0.489906 5_4:+46458582 Msa0854190:three_prime_UTR
ATTATTAGGACAGAGACAAA+AGG 0.495750 5_4:+46455430 Msa0854190:intron
TAATCTTGTAACAAATTGCT+TGG 0.499239 5_4:+46452544 Msa0854190:five_prime_UTR
GGAAAATAGGAAAGATGGGG+AGG 0.501683 5_4:+46458586 Msa0854190:three_prime_UTR
CAATCCTCTTTCGGCCTGGT+GGG 0.501687 5_4:+46455468 Msa0854190:CDS
AAATTCCTTTCATTGCCACT+AGG 0.502253 5_4:+46456012 Msa0854190:CDS
TATTAGGTGTTGATTCAACT+TGG 0.506397 5_4:+46454313 Msa0854190:intron
GTGGCCCACCAGGCCGAAAG+AGG 0.510742 5_4:-46455472 None:intergenic
TCGACTTTCAAGTCATTCAC+AGG 0.515560 5_4:-46458526 None:intergenic
AGCATATGGCGCGTAGATGT+TGG 0.517490 5_4:+46456839 Msa0854190:CDS
TCAATCCTCTTTCGGCCTGG+TGG 0.518213 5_4:+46455467 Msa0854190:CDS
AAGGCATGGTGTTGCACTCA+AGG 0.519563 5_4:+46455511 Msa0854190:CDS
GGACATACTCCTCAAACTGT+TGG 0.520775 5_4:+46456571 Msa0854190:CDS
AGACAGATACAGTGAACTTC+AGG 0.522315 5_4:+46457029 Msa0854190:CDS
CCAATGATCGCAGCAAGGAC+AGG 0.523343 5_4:-46454372 None:intergenic
TTGCACTCAAGGTTAATGAC+TGG 0.526498 5_4:+46455522 Msa0854190:CDS
TGAGTAGTTGGAGATTTACA+TGG 0.529672 5_4:+46453815 Msa0854190:intron
CGAGGACAAGGATGAGAAGA+TGG 0.530351 5_4:-46452717 None:intergenic
GATAAACAAGCGAAATTGAA+AGG 0.532245 5_4:+46454394 Msa0854190:CDS
CAGGCCGAAAGAGGATTGAT+CGG 0.532500 5_4:-46455463 None:intergenic
AATACCTTCACTAAATTCCA+AGG 0.532662 5_4:-46455163 None:intergenic
GGGAAGAAACATTTACCGGT+TGG 0.536242 5_4:+46455083 Msa0854190:CDS
CAATAATTCTGAAGATGACT+GGG 0.536582 5_4:+46455063 Msa0854190:CDS
TGATGCTAAGGCAATGGTGG+TGG 0.540164 5_4:+46456549 Msa0854190:CDS
TGTAACAAATTGCTTGGCTG+AGG 0.542098 5_4:+46452550 Msa0854190:five_prime_UTR
AATTCCTTTCATTGCCACTA+GGG 0.544604 5_4:+46456013 Msa0854190:CDS
TTGCAGCGTTTCTTCAAGAA+CGG 0.547457 5_4:-46456521 None:intergenic
AATGACTGGGTCTTCTGTCA+TGG 0.548088 5_4:+46455536 Msa0854190:CDS
CAAAGAAGAAGAAGAAAGAG+AGG 0.549838 5_4:-46452748 None:intergenic
AGGCCGAAAGAGGATTGATC+GGG 0.552133 5_4:-46455462 None:intergenic
TGAGACCATGAATGTGGAAG+GGG 0.554110 5_4:+46454982 Msa0854190:CDS
TTCAGATATGTTGATTCTGG+AGG 0.554414 5_4:+46455007 Msa0854190:CDS
GCTGCAAGCAGTTGATGCTA+AGG 0.559445 5_4:+46456537 Msa0854190:CDS
ACTGACCGTGGTGAGGAAGA+AGG 0.565272 5_4:-46455562 None:intergenic
GCTCTGATGGTCAAGACTTG+TGG 0.566662 5_4:+46453885 Msa0854190:CDS
TCACACGCCAGTGGCCCACC+AGG 0.567392 5_4:-46455482 None:intergenic
TGCACTCAAGGTTAATGACT+GGG 0.567545 5_4:+46455523 Msa0854190:CDS
TTATTAGGACAGAGACAAAA+GGG 0.571241 5_4:+46455431 Msa0854190:intron
AGATATGCACTTGAAATGGC+TGG 0.572444 5_4:+46453854 Msa0854190:CDS
GATGGTCAAGACTTGTGGAC+TGG 0.574733 5_4:+46453890 Msa0854190:CDS
GCGTGTGAGCTTGCAAGGCA+TGG 0.576777 5_4:+46455497 Msa0854190:CDS
CATGAGACCATGAATGTGGA+AGG 0.579915 5_4:+46454980 Msa0854190:CDS
ACAGTACTGTCATTCTCACT+TGG 0.580375 5_4:-46455987 None:intergenic
GGAGCAGAAACAAAAGTTGG+TGG 0.582357 5_4:-46452855 None:intergenic
CCAGGAGCAGAAACAAAAGT+TGG 0.582610 5_4:-46452858 None:intergenic
AGGATGCACAAGAATAAAGG+TGG 0.584403 5_4:+46458564 Msa0854190:three_prime_UTR
TCTTGAATTAAGGACTCCAC+TGG 0.588049 5_4:-46456867 None:intergenic
GGGACCTTGGAATTTAGTGA+AGG 0.593234 5_4:+46455159 Msa0854190:CDS
TAACCCCTAGTGGCAATGAA+AGG 0.595768 5_4:-46456017 None:intergenic
CCAGCGAGAATAGTGCGACC+AGG 0.596339 5_4:-46452876 None:intergenic
ATTCCTTTCATTGCCACTAG+GGG 0.605294 5_4:+46456014 Msa0854190:CDS
GGATGAGAAGATGGTGAGAG+TGG 0.613491 5_4:-46452708 None:intergenic
GAGGTGTTGTTACGAGGACA+AGG 0.617584 5_4:-46452729 None:intergenic
ATGAGACCATGAATGTGGAA+GGG 0.617703 5_4:+46454981 Msa0854190:CDS
TGACTTGAAAGTCGAAAGCA+AGG 0.618448 5_4:+46458534 Msa0854190:three_prime_UTR
ACATACTCCTCAAACTGTTG+GGG 0.629092 5_4:+46456573 Msa0854190:CDS
GGGTTGATGTATCTGAGAAG+TGG 0.629338 5_4:+46455104 Msa0854190:CDS
GAGCAGAAACAAAAGTTGGT+GGG 0.630088 5_4:-46452854 None:intergenic
GGCGGCCTTCTTCCTCACCA+CGG 0.632687 5_4:+46455557 Msa0854190:CDS
GAAAGAGAGGTGTTGTTACG+AGG 0.633645 5_4:-46452735 None:intergenic
CTTGCAAGCTCACACGCCAG+TGG 0.635650 5_4:-46455491 None:intergenic
GGATGCACAAGAATAAAGGT+GGG 0.637197 5_4:+46458565 Msa0854190:three_prime_UTR
TTTATCCAATGATCGCAGCA+AGG 0.638421 5_4:-46454377 None:intergenic
GTAAAATACTGACCGTGGTG+AGG 0.638720 5_4:-46455569 None:intergenic
AGGATGAAGATAATATTACC+AGG 0.651850 5_4:-46455888 None:intergenic
ACAGGAGTAAAGAGCAACAT+CGG 0.655519 5_4:+46458334 Msa0854190:three_prime_UTR
TAGTTGCGTATGGTTTAGAG+CGG 0.656501 5_4:+46455931 Msa0854190:CDS
AGCAGTTGATGCTAAGGCAA+TGG 0.660163 5_4:+46456543 Msa0854190:CDS
CTTGGAGATATATTAGATCG+AGG 0.662741 5_4:+46454331 Msa0854190:CDS
GATGCTAAGGCAATGGTGGT+GGG 0.662923 5_4:+46456550 Msa0854190:CDS
GGTCAAGACTTGTGGACTGG+TGG 0.662970 5_4:+46453893 Msa0854190:CDS
AACACTGTCATAACCCCTAG+TGG 0.665651 5_4:-46456027 None:intergenic
AAGTGACTAGAATAAGTCGA+CGG 0.676557 5_4:-46458373 None:intergenic
AAACCATGAGACCATGAATG+TGG 0.677540 5_4:+46454976 Msa0854190:CDS
AAACAAGCGAAATTGAAAGG+TGG 0.681777 5_4:+46454397 Msa0854190:CDS
AGTCCTTAATTCAAGACCAG+AGG 0.683122 5_4:+46456874 Msa0854190:CDS
CAGATACAGTGAACTTCAGG+CGG 0.688619 5_4:+46457032 Msa0854190:CDS
GACTGGGTCTTCTGTCATGG+CGG 0.692152 5_4:+46455539 Msa0854190:CDS
GTAGATGTTGGAATGTCCAG+TGG 0.693208 5_4:+46456851 Msa0854190:CDS
GAAAATAGGAAAGATGGGGA+GGG 0.694803 5_4:+46458587 Msa0854190:three_prime_UTR
GTGGGAAAATAGGAAAGATG+GGG 0.697633 5_4:+46458583 Msa0854190:three_prime_UTR
AGTTGATGCTAAGGCAATGG+TGG 0.697830 5_4:+46456546 Msa0854190:CDS
TGAACAAAGAAGTGTCTGTG+TGG 0.740145 5_4:+46455955 Msa0854190:CDS
ACAAAGTCAAGAAGTCATTG+GGG 0.742521 5_4:+46455139 Msa0854190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAATTTTTTTAAATTT+TGG + chr5_4:46457479-46457498 Msa0854190:intron 0.0%
!!! TTCAATTAATTTTCAATAAA+TGG + chr5_4:46454930-46454949 Msa0854190:intron 10.0%
!!! TAATTTTTTTAAATTTTGGT+TGG + chr5_4:46457483-46457502 Msa0854190:intron 10.0%
!!! AATTTTTTTAAATTTTGGTT+GGG + chr5_4:46457484-46457503 Msa0854190:intron 10.0%
!! CATCAAAAATCAAAATAAAA+TGG + chr5_4:46452656-46452675 Msa0854190:exon 15.0%
!! AAATAAGCAAAATTAAGATA+TGG - chr5_4:46452919-46452938 None:intergenic 15.0%
!!! TCTTAATTTTGCTTATTTTT+TGG + chr5_4:46452921-46452940 Msa0854190:intron 15.0%
!! CAAATAATTCATTTCAAAAA+AGG - chr5_4:46454523-46454542 None:intergenic 15.0%
!! AAACTTCATAATAATAACAT+GGG - chr5_4:46454840-46454859 None:intergenic 15.0%
!! CTACTTAATTTAGATAAAAA+TGG - chr5_4:46454863-46454882 None:intergenic 15.0%
!! TCTAAGCTAAAAATATTATA+TGG + chr5_4:46456203-46456222 Msa0854190:intron 15.0%
!!! TTTTCTTTATATATAGATTG+TGG - chr5_4:46456658-46456677 None:intergenic 15.0%
!! TATATATAATGTAAAGATTG+TGG - chr5_4:46456685-46456704 None:intergenic 15.0%
!!! ATAATACTCAAATTGAATTT+TGG - chr5_4:46458292-46458311 None:intergenic 15.0%
!! ATTATTACAATTATATTGAC+TGG + chr5_4:46458643-46458662 Msa0854190:three_prime_UTR 15.0%
!! AAGGAAAAAAAAAAAACAAT+GGG - chr5_4:46458681-46458700 None:intergenic 15.0%
!! TAAGGAAAAAAAAAAAACAA+TGG - chr5_4:46458682-46458701 None:intergenic 15.0%
!! AAAATAACGAGAAAATTTAG+AGG - chr5_4:46452602-46452621 None:intergenic 20.0%
!!! TTAATCTTTTCAGAGTAAAT+GGG + chr5_4:46452623-46452642 Msa0854190:five_prime_UTR 20.0%
!! TATTAGTGTATTAAAATCAC+AGG - chr5_4:46453695-46453714 None:intergenic 20.0%
!! GAAACTTCATAATAATAACA+TGG - chr5_4:46454841-46454860 None:intergenic 20.0%
!! TTGAATTAGGAATTTATTCT+TGG - chr5_4:46455231-46455250 None:intergenic 20.0%
!! ATTCCTAATTCAAACTAATT+TGG + chr5_4:46455238-46455257 Msa0854190:intron 20.0%
!! TTATTCAGTATGTGATTAAT+AGG + chr5_4:46456130-46456149 Msa0854190:intron 20.0%
!!! AATATTTTTAGCTTAGACAA+GGG - chr5_4:46456200-46456219 None:intergenic 20.0%
!!! TAATATTTTTAGCTTAGACA+AGG - chr5_4:46456201-46456220 None:intergenic 20.0%
!! AATAATGAAAAGTTACAGAA+AGG - chr5_4:46456318-46456337 None:intergenic 20.0%
!! TTAAGTCAACAAATTTAACA+TGG + chr5_4:46456336-46456355 Msa0854190:intron 20.0%
!! AACAAATTTAACATGGTATA+GGG + chr5_4:46456343-46456362 Msa0854190:intron 20.0%
!! AACTCAATAATTCAATATTC+AGG + chr5_4:46456492-46456511 Msa0854190:intron 20.0%
!!! TTCTTTTTATTCAATTTTGC+TGG - chr5_4:46457338-46457357 None:intergenic 20.0%
!!! TTTCATAATTTGTTTCAAGA+AGG + chr5_4:46457880-46457899 Msa0854190:intron 20.0%
!!! GTTTTTCCAAATTGTTTTTA+CGG - chr5_4:46457920-46457939 None:intergenic 20.0%
!! AGGAAAAAAAAAAAACAATG+GGG - chr5_4:46458680-46458699 None:intergenic 20.0%
!! ATTGAGAACAAATATTAGTT+GGG - chr5_4:46458746-46458765 None:intergenic 20.0%
!! AATTGAGAACAAATATTAGT+TGG - chr5_4:46458747-46458766 None:intergenic 20.0%
! TAATCTTGTAACAAATTGCT+TGG + chr5_4:46452544-46452563 Msa0854190:five_prime_UTR 25.0%
!! CTTAATCTTTTCAGAGTAAA+TGG + chr5_4:46452622-46452641 Msa0854190:five_prime_UTR 25.0%
!!! AACTACTTGATGATGTTTTA+AGG - chr5_4:46452809-46452828 None:intergenic 25.0%
!! TTGAAACCTATTGTTGTTAT+TGG + chr5_4:46452828-46452847 Msa0854190:CDS 25.0%
! TATTAAGTATTATCTCAGCT+TGG + chr5_4:46453441-46453460 Msa0854190:intron 25.0%
! CTAGTATTGTGTTAGAAATA+TGG + chr5_4:46453497-46453516 Msa0854190:intron 25.0%
! TTGTGTTAGAAATATGGAAT+TGG + chr5_4:46453503-46453522 Msa0854190:intron 25.0%
! ACAAGTGATTAAAATTTCTG+TGG + chr5_4:46453657-46453676 Msa0854190:intron 25.0%
! ATAAAAATCAAAACGAGTTC+AGG - chr5_4:46453744-46453763 None:intergenic 25.0%
! AGTACTATAAACAGTAAGAA+TGG - chr5_4:46454155-46454174 None:intergenic 25.0%
! TTGAATCAACACCTAATATA+CGG - chr5_4:46454311-46454330 None:intergenic 25.0%
! TTAAGGAAATAAGCTGAAAA+TGG - chr5_4:46454615-46454634 None:intergenic 25.0%
!! GTCTTTAACATTTGGTAATT+AGG - chr5_4:46454762-46454781 None:intergenic 25.0%
! CTATTGTTGTCTTTAACATT+TGG - chr5_4:46454770-46454789 None:intergenic 25.0%
!! TTGCCAAATTAGTTTGAATT+AGG - chr5_4:46455244-46455263 None:intergenic 25.0%
! TCATGTTAAACAAAACCAAA+AGG - chr5_4:46455598-46455617 None:intergenic 25.0%
! TCACTATCTTGAATTGTATT+TGG + chr5_4:46455666-46455685 Msa0854190:intron 25.0%
! AATCAATTCAAGATACAGAT+GGG - chr5_4:46455806-46455825 None:intergenic 25.0%
!! TGATTCAACAAATTTGAAAC+AGG - chr5_4:46455846-46455865 None:intergenic 25.0%
! CAACAAATTTAACATGGTAT+AGG + chr5_4:46456342-46456361 Msa0854190:intron 25.0%
! AATAATTCCAAGAATGCTTA+AGG - chr5_4:46456622-46456641 None:intergenic 25.0%
! CTGTAAATTACAATAACTAC+TGG - chr5_4:46456943-46456962 None:intergenic 25.0%
!! CAATGAAAAGAATTTGCTTT+CGG - chr5_4:46457150-46457169 None:intergenic 25.0%
!! GAAAGCAAATTCTTTTCATT+GGG + chr5_4:46457149-46457168 Msa0854190:intron 25.0%
! TTTCATTGGGAAATATACAT+TGG + chr5_4:46457162-46457181 Msa0854190:intron 25.0%
! TTGAAATTTCCACCTAATAA+AGG + chr5_4:46457208-46457227 Msa0854190:intron 25.0%
! TGAAATTTCCACCTAATAAA+GGG + chr5_4:46457209-46457228 Msa0854190:intron 25.0%
!! TTTTATTCAATTTTGCTGGT+TGG - chr5_4:46457334-46457353 None:intergenic 25.0%
!! TGATTGATTTCTGTATATCA+TGG + chr5_4:46457397-46457416 Msa0854190:intron 25.0%
! AATGAATTAAATGATGTCAC+TGG - chr5_4:46457523-46457542 None:intergenic 25.0%
!!! GTTGTTTCCATAAACTATTT+TGG + chr5_4:46457706-46457725 Msa0854190:intron 25.0%
! AAGTTCTCCAAAATAGTTTA+TGG - chr5_4:46457716-46457735 None:intergenic 25.0%
! GAACTTATAAAAACAGCTTA+TGG - chr5_4:46457773-46457792 None:intergenic 25.0%
!!! TAAGTTTTGTGATACTGTTT+TGG - chr5_4:46457797-46457816 None:intergenic 25.0%
!!! ATTGTTTTTACGGTTCAATT+TGG - chr5_4:46457910-46457929 None:intergenic 25.0%
! ATTGAACCGTAAAAACAATT+TGG + chr5_4:46457911-46457930 Msa0854190:intron 25.0%
!!! TGAATTTTGGAAATTGTTAC+CGG - chr5_4:46458279-46458298 None:intergenic 25.0%
!! ATTATGATTTTGCAGAATTG+CGG + chr5_4:46458307-46458326 Msa0854190:intron 25.0%
AAGGCTATTGTGATTATTGT+TGG - chr5_4:46452790-46452809 None:intergenic 30.0%
GCAAAATTAAGATATGGAAG+AGG - chr5_4:46452913-46452932 None:intergenic 30.0%
! ATCGAATACTTTTGATGTAG+TGG + chr5_4:46453034-46453053 Msa0854190:intron 30.0%
! TAAAACCTTTTACGCGAATT+AGG + chr5_4:46453289-46453308 Msa0854190:intron 30.0%
AATTAGGATCAAATGGAGAA+TGG + chr5_4:46453305-46453324 Msa0854190:intron 30.0%
!!! ATGGCGTAGTAGTTTTTTTA+TGG + chr5_4:46453324-46453343 Msa0854190:intron 30.0%
!!! CGTAGTAGTTTTTTTATGGA+AGG + chr5_4:46453328-46453347 Msa0854190:intron 30.0%
TTTAACCTAGGGAATTATCA+AGG - chr5_4:46453369-46453388 None:intergenic 30.0%
! TTTAGTTCAGCTTTAACCTA+GGG - chr5_4:46453380-46453399 None:intergenic 30.0%
!!! TTACTGTTAGCTGTTTTTGT+TGG + chr5_4:46453552-46453571 Msa0854190:intron 30.0%
!!! TTTTTTTCTCTCTGAGTAGT+TGG + chr5_4:46453803-46453822 Msa0854190:intron 30.0%
ATGCTTAGTGTCTTTCAAAA+TGG + chr5_4:46453925-46453944 Msa0854190:intron 30.0%
!!! GGATTTCTGTTAGTTTTAGT+TGG + chr5_4:46453946-46453965 Msa0854190:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG + chr5_4:46454060-46454079 Msa0854190:intron 30.0%
ACTATAAACAGTAAGAATGG+AGG - chr5_4:46454152-46454171 None:intergenic 30.0%
!! TTACTTTTCCTCCGTATATT+AGG + chr5_4:46454297-46454316 Msa0854190:intron 30.0%
!! TATTAGGTGTTGATTCAACT+TGG + chr5_4:46454313-46454332 Msa0854190:intron 30.0%
GATAAACAAGCGAAATTGAA+AGG + chr5_4:46454394-46454413 Msa0854190:CDS 30.0%
!! TGTTTCAGGTTTGTAATTTG+TGG + chr5_4:46454425-46454444 Msa0854190:intron 30.0%
ATTAAAGCTGCTATCTCTAA+GGG + chr5_4:46454497-46454516 Msa0854190:intron 30.0%
AGTTTCACAAATGTATACTC+TGG - chr5_4:46454556-46454575 None:intergenic 30.0%
TTAAGATGTTTAGCCAAACA+AGG + chr5_4:46454736-46454755 Msa0854190:intron 30.0%
!! GATTTCAGATATGTTGATTC+TGG + chr5_4:46455004-46455023 Msa0854190:CDS 30.0%
TGATGAATGTAGTGATTTCT+TGG + chr5_4:46455033-46455052 Msa0854190:CDS 30.0%
! TCAATAATTCTGAAGATGAC+TGG + chr5_4:46455062-46455081 Msa0854190:CDS 30.0%
! CAATAATTCTGAAGATGACT+GGG + chr5_4:46455063-46455082 Msa0854190:CDS 30.0%
AACAAAGTCAAGAAGTCATT+GGG + chr5_4:46455138-46455157 Msa0854190:CDS 30.0%
AATACCTTCACTAAATTCCA+AGG - chr5_4:46455166-46455185 None:intergenic 30.0%
GGGTCATATAGACAAAATTT+CGG + chr5_4:46455322-46455341 Msa0854190:intron 30.0%
! GATGAAGTTTTCCGATTATT+AGG + chr5_4:46455416-46455435 Msa0854190:intron 30.0%
TTTGTCTCTGTCCTAATAAT+CGG - chr5_4:46455430-46455449 None:intergenic 30.0%
ATTATTAGGACAGAGACAAA+AGG + chr5_4:46455430-46455449 Msa0854190:intron 30.0%
TTATTAGGACAGAGACAAAA+GGG + chr5_4:46455431-46455450 Msa0854190:intron 30.0%
! TCAGTATTTTACTGTCCTTT+TGG + chr5_4:46455580-46455599 Msa0854190:intron 30.0%
ATCAATTCAAGATACAGATG+GGG - chr5_4:46455805-46455824 None:intergenic 30.0%
CAATCAATTCAAGATACAGA+TGG - chr5_4:46455807-46455826 None:intergenic 30.0%
AGGATGAAGATAATATTACC+AGG - chr5_4:46455891-46455910 None:intergenic 30.0%
CAGAAAATGAAGAGACAAAA+AGG - chr5_4:46455911-46455930 None:intergenic 30.0%
TCAGTATGTGATTAATAGGA+AGG + chr5_4:46456134-46456153 Msa0854190:intron 30.0%
!! ATTAATAGGAAGGTATTGTG+CGG + chr5_4:46456144-46456163 Msa0854190:intron 30.0%
AATGAAAAGTTACAGAAAGG+TGG - chr5_4:46456315-46456334 None:intergenic 30.0%
AAATGACAGATGCTTTATCT+AGG + chr5_4:46456740-46456759 Msa0854190:intron 30.0%
GTAAATACAATTGCAGCATA+TGG + chr5_4:46456825-46456844 Msa0854190:intron 30.0%
AGACAAACAAAAGATGTAAC+AGG + chr5_4:46457070-46457089 Msa0854190:three_prime_UTR 30.0%
! CGAAAGCAAATTCTTTTCAT+TGG + chr5_4:46457148-46457167 Msa0854190:intron 30.0%
!! GAATAGAAGTACCCTTTATT+AGG - chr5_4:46457223-46457242 None:intergenic 30.0%
TATCATGGAATTTCATCGAA+TGG + chr5_4:46457412-46457431 Msa0854190:intron 30.0%
AAAGATAGTGCAGTAACAAA+AGG + chr5_4:46457443-46457462 Msa0854190:intron 30.0%
!!! ATTTTGGTTGGGTTTTCAAT+AGG + chr5_4:46457495-46457514 Msa0854190:intron 30.0%
TTGTAAAAGTTATCCCACTA+GGG - chr5_4:46457858-46457877 None:intergenic 30.0%
ATTGTAAAAGTTATCCCACT+AGG - chr5_4:46457859-46457878 None:intergenic 30.0%
TTTGGACCCATATTGTTAAA+TGG + chr5_4:46458007-46458026 Msa0854190:intron 30.0%
!! GAATTTTGGAAATTGTTACC+GGG - chr5_4:46458278-46458297 None:intergenic 30.0%
! TTATGATTTTGCAGAATTGC+GGG + chr5_4:46458308-46458327 Msa0854190:intron 30.0%
TAGTGATACAATTTGAAGAC+AGG + chr5_4:46458480-46458499 Msa0854190:three_prime_UTR 30.0%
AATAGGATGCACAAGAATAA+AGG + chr5_4:46458561-46458580 Msa0854190:three_prime_UTR 30.0%
AAGAATAAAGGTGGGAAAAT+AGG + chr5_4:46458573-46458592 Msa0854190:three_prime_UTR 30.0%
AAAAAACAATGGGGCAATTT+AGG - chr5_4:46458671-46458690 None:intergenic 30.0%
CAAAGAAGAAGAAGAAAGAG+AGG - chr5_4:46452751-46452770 None:intergenic 35.0%
TAGCATAACTGTGACATCAT+AGG - chr5_4:46453099-46453118 None:intergenic 35.0%
AAAAAAAGTTCTGCAACAGC+AGG - chr5_4:46453270-46453289 None:intergenic 35.0%
TTGATCCTAATTCGCGTAAA+AGG - chr5_4:46453297-46453316 None:intergenic 35.0%
TTACGCGAATTAGGATCAAA+TGG + chr5_4:46453298-46453317 Msa0854190:intron 35.0%
! CTTTAGTTCAGCTTTAACCT+AGG - chr5_4:46453381-46453400 None:intergenic 35.0%
TGAGTAGTTGGAGATTTACA+TGG + chr5_4:46453815-46453834 Msa0854190:intron 35.0%
AGCTAGATATGCACTTGAAA+TGG + chr5_4:46453850-46453869 Msa0854190:CDS 35.0%
AATCAACACCTAATATACGG+AGG - chr5_4:46454308-46454327 None:intergenic 35.0%
CTTGGAGATATATTAGATCG+AGG + chr5_4:46454331-46454350 Msa0854190:CDS 35.0%
AAACAAGCGAAATTGAAAGG+TGG + chr5_4:46454397-46454416 Msa0854190:CDS 35.0%
CATTAAAGCTGCTATCTCTA+AGG + chr5_4:46454496-46454515 Msa0854190:intron 35.0%
GCTGAAAATGGACATATCAT+AGG - chr5_4:46454603-46454622 None:intergenic 35.0%
CTTATTTCCTTAAACTCTCC+AGG + chr5_4:46454622-46454641 Msa0854190:intron 35.0%
!! TTTGGTAATTAGGCCTTGTT+TGG - chr5_4:46454752-46454771 None:intergenic 35.0%
CAACATAATGCGTAATGAGT+AGG - chr5_4:46454811-46454830 None:intergenic 35.0%
! TAAATGGTTCTGCTTTGTCT+AGG + chr5_4:46454946-46454965 Msa0854190:intron 35.0%
TTCTGCTTTGTCTAGGTAAA+TGG + chr5_4:46454953-46454972 Msa0854190:intron 35.0%
!! TTCAGATATGTTGATTCTGG+AGG + chr5_4:46455007-46455026 Msa0854190:CDS 35.0%
GAACAAAGTCAAGAAGTCAT+TGG + chr5_4:46455137-46455156 Msa0854190:CDS 35.0%
ACAAAGTCAAGAAGTCATTG+GGG + chr5_4:46455139-46455158 Msa0854190:CDS 35.0%
!! TTATTCCAGCACGTTGATTT+GGG - chr5_4:46455296-46455315 None:intergenic 35.0%
TCCTTCACTAGAATTTACTG+CGG + chr5_4:46455731-46455750 Msa0854190:intron 35.0%
!! TGTTTTGAGCTAAGGGTAAA+AGG - chr5_4:46455767-46455786 None:intergenic 35.0%
!! AGGCTTCTGAAATTAGAGAA+AGG - chr5_4:46455871-46455890 None:intergenic 35.0%
TTTCTCTAATTTCAGAAGCC+TGG + chr5_4:46455870-46455889 Msa0854190:intron 35.0%
! TCATTTTCTGTAGTTGCGTA+TGG + chr5_4:46455921-46455940 Msa0854190:CDS 35.0%
TAGTGGCAATGAAAGGAATT+TGG - chr5_4:46456013-46456032 None:intergenic 35.0%
AAATTCCTTTCATTGCCACT+AGG + chr5_4:46456012-46456031 Msa0854190:CDS 35.0%
AATTCCTTTCATTGCCACTA+GGG + chr5_4:46456013-46456032 Msa0854190:CDS 35.0%
!! ATGACAGTGTTGTTTGGAAT+CGG + chr5_4:46456039-46456058 Msa0854190:CDS 35.0%
!! ACCAGATTTGATGGATTATG+AGG + chr5_4:46456079-46456098 Msa0854190:CDS 35.0%
CAATACAAGTCATACTGAGA+CGG - chr5_4:46456461-46456480 None:intergenic 35.0%
GACATTTCCTTAAGCATTCT+TGG + chr5_4:46456612-46456631 Msa0854190:intron 35.0%
GCTGCAATTGTATTTACTGT+AGG - chr5_4:46456822-46456841 None:intergenic 35.0%
!! TTACCTCTGGTCTTGAATTA+AGG - chr5_4:46456880-46456899 None:intergenic 35.0%
CAGTTGTGTTCTTATTCTCT+AGG + chr5_4:46456960-46456979 Msa0854190:intron 35.0%
ACGATAAAGCCAGAGTTATA+AGG + chr5_4:46456998-46457017 Msa0854190:CDS 35.0%
! TGTTTTGCTCCTTATAACTC+TGG - chr5_4:46457010-46457029 None:intergenic 35.0%
!! TAGAAGTACCCTTTATTAGG+TGG - chr5_4:46457220-46457239 None:intergenic 35.0%
TATGTCATTCTGCACTTAAC+CGG - chr5_4:46457270-46457289 None:intergenic 35.0%
ACTGCATTACTGTCAAACTA+TGG + chr5_4:46457296-46457315 Msa0854190:intron 35.0%
TTGAAACAGGGCTTAAATGA+TGG - chr5_4:46457560-46457579 None:intergenic 35.0%
!! TTTCTGCAGTTTTTCAACGA+GGG - chr5_4:46457587-46457606 None:intergenic 35.0%
! CAGCTTATGGCATTTTTCAT+AGG - chr5_4:46457760-46457779 None:intergenic 35.0%
AGGATAAACCATGAACTGTT+CGG - chr5_4:46457942-46457961 None:intergenic 35.0%
!! CTTTAAAGCAAGTTTGGTTC+AGG - chr5_4:46457962-46457981 None:intergenic 35.0%
! CTGAACCAAACTTGCTTTAA+AGG + chr5_4:46457960-46457979 Msa0854190:intron 35.0%
!! CTGAACCTTTAAAGCAAGTT+TGG - chr5_4:46457968-46457987 None:intergenic 35.0%
TGGCCTCCATTTAACAATAT+GGG - chr5_4:46458016-46458035 None:intergenic 35.0%
ATATTGTTAAATGGAGGCCA+CGG + chr5_4:46458016-46458035 Msa0854190:intron 35.0%
!! CAACACTGTTTTGAGTAAAC+AGG + chr5_4:46458157-46458176 Msa0854190:intron 35.0%
! AGAAATAGTTCGGTTCGTAA+AGG - chr5_4:46458210-46458229 None:intergenic 35.0%
! CGGTTAGTCAAGAAATAGTT+CGG - chr5_4:46458220-46458239 None:intergenic 35.0%
AGCAACATCGGCAAATTTAT+TGG + chr5_4:46458346-46458365 Msa0854190:three_prime_UTR 35.0%
AAGTGACTAGAATAAGTCGA+CGG - chr5_4:46458376-46458395 None:intergenic 35.0%
ATCCTTTGAACTGCCAAAAT+GGG - chr5_4:46458443-46458462 None:intergenic 35.0%
AATCCTTTGAACTGCCAAAA+TGG - chr5_4:46458444-46458463 None:intergenic 35.0%
GCAAGCAAGTGAAGTTTATA+AGG - chr5_4:46458700-46458719 None:intergenic 35.0%
TGTAACAAATTGCTTGGCTG+AGG + chr5_4:46452550-46452569 Msa0854190:five_prime_UTR 40.0%
GGGTCACCAATAACAACAAT+AGG - chr5_4:46452837-46452856 None:intergenic 40.0%
! GAGCAGAAACAAAAGTTGGT+GGG - chr5_4:46452857-46452876 None:intergenic 40.0%
AGCAACTATGCGCAATATCA+AGG - chr5_4:46453068-46453087 None:intergenic 40.0%
GATATTGCGCATAGTTGCTA+TGG + chr5_4:46453069-46453088 Msa0854190:intron 40.0%
TGATACTGTCACAATTGCAG+TGG + chr5_4:46453219-46453238 Msa0854190:intron 40.0%
! TTGCTCCTTGATAATTCCCT+AGG + chr5_4:46453361-46453380 Msa0854190:intron 40.0%
AGATATGCACTTGAAATGGC+TGG + chr5_4:46453854-46453873 Msa0854190:CDS 40.0%
TGCAATCTGTGATTGAACAC+TGG + chr5_4:46454117-46454136 Msa0854190:intron 40.0%
GCAATCTGTGATTGAACACT+GGG + chr5_4:46454118-46454137 Msa0854190:intron 40.0%
CAATCTGTGATTGAACACTG+GGG + chr5_4:46454119-46454138 Msa0854190:intron 40.0%
ACAGTAAGAATGGAGGCTAA+TGG - chr5_4:46454145-46454164 None:intergenic 40.0%
CGGAGGAAAAGTAAATAGAC+AGG - chr5_4:46454291-46454310 None:intergenic 40.0%
TTTATCCAATGATCGCAGCA+AGG - chr5_4:46454380-46454399 None:intergenic 40.0%
AAGCTATCCTGGAGAGTTTA+AGG - chr5_4:46454632-46454651 None:intergenic 40.0%
TAAACTCTCCAGGATAGCTT+AGG + chr5_4:46454632-46454651 Msa0854190:intron 40.0%
TTGTGTTTCCTAAGCTATCC+TGG - chr5_4:46454643-46454662 None:intergenic 40.0%
ACAACAATAGTACACCGCTA+AGG + chr5_4:46454780-46454799 Msa0854190:intron 40.0%
ATGAGTAGGCATATCCTTAG+CGG - chr5_4:46454797-46454816 None:intergenic 40.0%
AAACCATGAGACCATGAATG+TGG + chr5_4:46454976-46454995 Msa0854190:CDS 40.0%
ATGAGACCATGAATGTGGAA+GGG + chr5_4:46454981-46455000 Msa0854190:CDS 40.0%
GACTGGGAAGAAACATTTAC+CGG + chr5_4:46455079-46455098 Msa0854190:CDS 40.0%
! GGAAGAAACATTTACCGGTT+GGG + chr5_4:46455084-46455103 Msa0854190:CDS 40.0%
! CTTATTCCAGCACGTTGATT+TGG - chr5_4:46455297-46455316 None:intergenic 40.0%
AACGTGCTGGAATAAGTTAC+AGG + chr5_4:46455301-46455320 Msa0854190:intron 40.0%
ACGTGCTGGAATAAGTTACA+GGG + chr5_4:46455302-46455321 Msa0854190:intron 40.0%
TTGCACTCAAGGTTAATGAC+TGG + chr5_4:46455522-46455541 Msa0854190:CDS 40.0%
TGCACTCAAGGTTAATGACT+GGG + chr5_4:46455523-46455542 Msa0854190:CDS 40.0%
ACCGCAGTAAATTCTAGTGA+AGG - chr5_4:46455735-46455754 None:intergenic 40.0%
!! GCTCAACTGTTTTGAGCTAA+GGG - chr5_4:46455774-46455793 None:intergenic 40.0%
!! AGCTCAACTGTTTTGAGCTA+AGG - chr5_4:46455775-46455794 None:intergenic 40.0%
TCAAGATACAGATGGGGATT+GGG - chr5_4:46455799-46455818 None:intergenic 40.0%
TTCAAGATACAGATGGGGAT+TGG - chr5_4:46455800-46455819 None:intergenic 40.0%
TAGTTGCGTATGGTTTAGAG+CGG + chr5_4:46455931-46455950 Msa0854190:CDS 40.0%
!! TGAACAAAGAAGTGTCTGTG+TGG + chr5_4:46455955-46455974 Msa0854190:CDS 40.0%
ACAGTACTGTCATTCTCACT+TGG - chr5_4:46455990-46456009 None:intergenic 40.0%
ATTCCTTTCATTGCCACTAG+GGG + chr5_4:46456014-46456033 Msa0854190:CDS 40.0%
AAGAGACTCACCAGATTTGA+TGG + chr5_4:46456070-46456089 Msa0854190:CDS 40.0%
GCCTCATAATCCATCAAATC+TGG - chr5_4:46456083-46456102 None:intergenic 40.0%
!! GATGGATTATGAGGCTAAAC+AGG + chr5_4:46456088-46456107 Msa0854190:CDS 40.0%
!!! AGTCACGAAGCTAGTTTTCA+GGG - chr5_4:46456292-46456311 None:intergenic 40.0%
GACATACTCCTCAAACTGTT+GGG + chr5_4:46456572-46456591 Msa0854190:CDS 40.0%
ACATACTCCTCAAACTGTTG+GGG + chr5_4:46456573-46456592 Msa0854190:CDS 40.0%
CAATTTACCCCAACAGTTTG+AGG - chr5_4:46456583-46456602 None:intergenic 40.0%
CTCAAACTGTTGGGGTAAAT+TGG + chr5_4:46456581-46456600 Msa0854190:CDS 40.0%
TCTTGAATTAAGGACTCCAC+TGG - chr5_4:46456870-46456889 None:intergenic 40.0%
AGTCCTTAATTCAAGACCAG+AGG + chr5_4:46456874-46456893 Msa0854190:CDS 40.0%
CAAGACCAGAGGTAAATCAA+AGG + chr5_4:46456885-46456904 Msa0854190:intron 40.0%
GAACATGTGAAGACTCATGT+AGG - chr5_4:46456911-46456930 None:intergenic 40.0%
AGACAGATACAGTGAACTTC+AGG + chr5_4:46457029-46457048 Msa0854190:CDS 40.0%
TCCTTTGACCTGTCTATAAC+CGG + chr5_4:46457248-46457267 Msa0854190:intron 40.0%
AACGAGGGCTTATTGAAACA+GGG - chr5_4:46457572-46457591 None:intergenic 40.0%
!! CTTTCTGCAGTTTTTCAACG+AGG - chr5_4:46457588-46457607 None:intergenic 40.0%
TCAGATAAGCCAATCCAAAC+AGG + chr5_4:46457832-46457851 Msa0854190:intron 40.0%
TGGAAAAACCGAACAGTTCA+TGG + chr5_4:46457931-46457950 Msa0854190:intron 40.0%
GGACCCATATTGTTAAATGG+AGG + chr5_4:46458010-46458029 Msa0854190:intron 40.0%
GTGGCCTCCATTTAACAATA+TGG - chr5_4:46458017-46458036 None:intergenic 40.0%
CTCCATAGGAAGTTTGAGAA+GGG + chr5_4:46458055-46458074 Msa0854190:intron 40.0%
ATCCCTTCTCAAACTTCCTA+TGG - chr5_4:46458060-46458079 None:intergenic 40.0%
GCTGCAATGGTCTGTTTATT+GGG + chr5_4:46458102-46458121 Msa0854190:intron 40.0%
CTGCAATGGTCTGTTTATTG+GGG + chr5_4:46458103-46458122 Msa0854190:intron 40.0%
CAAAACAGTGTTGTCGATGA+CGG - chr5_4:46458150-46458169 None:intergenic 40.0%
ACAGGAGTAAAGAGCAACAT+CGG + chr5_4:46458334-46458353 Msa0854190:three_prime_UTR 40.0%
! TCGACTTTCAAGTCATTCAC+AGG - chr5_4:46458529-46458548 None:intergenic 40.0%
TGACTTGAAAGTCGAAAGCA+AGG + chr5_4:46458534-46458553 Msa0854190:three_prime_UTR 40.0%
GTCGAAAGCAAGGTGAAAAT+AGG + chr5_4:46458544-46458563 Msa0854190:three_prime_UTR 40.0%
AGGATGCACAAGAATAAAGG+TGG + chr5_4:46458564-46458583 Msa0854190:three_prime_UTR 40.0%
GGATGCACAAGAATAAAGGT+GGG + chr5_4:46458565-46458584 Msa0854190:three_prime_UTR 40.0%
AGGTGGGAAAATAGGAAAGA+TGG + chr5_4:46458581-46458600 Msa0854190:three_prime_UTR 40.0%
GGTGGGAAAATAGGAAAGAT+GGG + chr5_4:46458582-46458601 Msa0854190:three_prime_UTR 40.0%
GTGGGAAAATAGGAAAGATG+GGG + chr5_4:46458583-46458602 Msa0854190:three_prime_UTR 40.0%
GAAAATAGGAAAGATGGGGA+GGG + chr5_4:46458587-46458606 Msa0854190:three_prime_UTR 40.0%
!! GAAAGAGAGGTGTTGTTACG+AGG - chr5_4:46452738-46452757 None:intergenic 45.0%
GGAGCAGAAACAAAAGTTGG+TGG - chr5_4:46452858-46452877 None:intergenic 45.0%
CCAGGAGCAGAAACAAAAGT+TGG - chr5_4:46452861-46452880 None:intergenic 45.0%
!!! CCAACTTTTGTTTCTGCTCC+TGG + chr5_4:46452858-46452877 Msa0854190:CDS 45.0%
GTCAAATAGCGGCGATATAG+CGG + chr5_4:46454071-46454090 Msa0854190:intron 45.0%
CTTCCACATTCATGGTCTCA+TGG - chr5_4:46454982-46455001 None:intergenic 45.0%
CATGAGACCATGAATGTGGA+AGG + chr5_4:46454980-46454999 Msa0854190:CDS 45.0%
TGAGACCATGAATGTGGAAG+GGG + chr5_4:46454982-46455001 Msa0854190:CDS 45.0%
GAAATCCCCTTCCACATTCA+TGG - chr5_4:46454990-46455009 None:intergenic 45.0%
GGGAAGAAACATTTACCGGT+TGG + chr5_4:46455083-46455102 Msa0854190:CDS 45.0%
CTCAGATACATCAACCCAAC+CGG - chr5_4:46455101-46455120 None:intergenic 45.0%
!! GGGTTGATGTATCTGAGAAG+TGG + chr5_4:46455104-46455123 Msa0854190:CDS 45.0%
GGGACCTTGGAATTTAGTGA+AGG + chr5_4:46455159-46455178 Msa0854190:CDS 45.0%
!! AGCACGTTGATTTGGGAGTT+AGG - chr5_4:46455289-46455308 None:intergenic 45.0%
TAACTCCCAAATCAACGTGC+TGG + chr5_4:46455288-46455307 Msa0854190:intron 45.0%
TTGCCCGATCAATCCTCTTT+CGG + chr5_4:46455459-46455478 Msa0854190:CDS 45.0%
AATGACTGGGTCTTCTGTCA+TGG + chr5_4:46455536-46455555 Msa0854190:CDS 45.0%
GTAAAATACTGACCGTGGTG+AGG - chr5_4:46455572-46455591 None:intergenic 45.0%
GGACAGTAAAATACTGACCG+TGG - chr5_4:46455577-46455596 None:intergenic 45.0%
TAACCCCTAGTGGCAATGAA+AGG - chr5_4:46456020-46456039 None:intergenic 45.0%
AACACTGTCATAACCCCTAG+TGG - chr5_4:46456030-46456049 None:intergenic 45.0%
! GGGGTTATGACAGTGTTGTT+TGG + chr5_4:46456033-46456052 Msa0854190:CDS 45.0%
!!! CGAAGCTAGTTTTCAGGGAA+AGG - chr5_4:46456287-46456306 None:intergenic 45.0%
!!! GAGTCACGAAGCTAGTTTTC+AGG - chr5_4:46456293-46456312 None:intergenic 45.0%
! AGCAGTTGATGCTAAGGCAA+TGG + chr5_4:46456543-46456562 Msa0854190:CDS 45.0%
! AGTTGATGCTAAGGCAATGG+TGG + chr5_4:46456546-46456565 Msa0854190:CDS 45.0%
GGACATACTCCTCAAACTGT+TGG + chr5_4:46456571-46456590 Msa0854190:CDS 45.0%
CTAGGTCAGCTAGTGCATTA+TGG + chr5_4:46456758-46456777 Msa0854190:intron 45.0%
GTCAGCTAGTGCATTATGGA+TGG + chr5_4:46456762-46456781 Msa0854190:intron 45.0%
GTAGATGTTGGAATGTCCAG+TGG + chr5_4:46456851-46456870 Msa0854190:CDS 45.0%
! GTAGGCCTTTGATTTACCTC+TGG - chr5_4:46456893-46456912 None:intergenic 45.0%
CAGATACAGTGAACTTCAGG+CGG + chr5_4:46457032-46457051 Msa0854190:CDS 45.0%
ACCGGTTATAGACAGGTCAA+AGG - chr5_4:46457252-46457271 None:intergenic 45.0%
GCACTTAACCGGTTATAGAC+AGG - chr5_4:46457259-46457278 None:intergenic 45.0%
CAACGAGGGCTTATTGAAAC+AGG - chr5_4:46457573-46457592 None:intergenic 45.0%
! CTTTAAAGGTTCAGTGCACC+AGG + chr5_4:46457974-46457993 Msa0854190:intron 45.0%
! GCACCAGGTTATGTGCTTTT+TGG + chr5_4:46457989-46458008 Msa0854190:intron 45.0%
! GGTCCAAAAAGCACATAACC+TGG - chr5_4:46457995-46458014 None:intergenic 45.0%
!!! GGTTTTTTGACAGCCTCCAT+AGG + chr5_4:46458041-46458060 Msa0854190:intron 45.0%
CCTTCTCAAACTTCCTATGG+AGG - chr5_4:46458057-46458076 None:intergenic 45.0%
CCTCCATAGGAAGTTTGAGA+AGG + chr5_4:46458054-46458073 Msa0854190:intron 45.0%
GGCTGCAATGGTCTGTTTAT+TGG + chr5_4:46458101-46458120 Msa0854190:intron 45.0%
ACACACAAACCAAGCCTATG+GGG - chr5_4:46458249-46458268 None:intergenic 45.0%
CACACACAAACCAAGCCTAT+GGG - chr5_4:46458250-46458269 None:intergenic 45.0%
ACACACACAAACCAAGCCTA+TGG - chr5_4:46458251-46458270 None:intergenic 45.0%
! TGGTTTGTGTGTGTAGTACC+CGG + chr5_4:46458257-46458276 Msa0854190:intron 45.0%
!! GACCCATTTTGGCAGTTCAA+AGG + chr5_4:46458438-46458457 Msa0854190:three_prime_UTR 45.0%
GGAAAATAGGAAAGATGGGG+AGG + chr5_4:46458586-46458605 Msa0854190:three_prime_UTR 45.0%
! TGCTTGGCTGAGGAGCTTTT+TGG + chr5_4:46452560-46452579 Msa0854190:five_prime_UTR 50.0%
! GCTTGGCTGAGGAGCTTTTT+GGG + chr5_4:46452561-46452580 Msa0854190:five_prime_UTR 50.0%
GGATGAGAAGATGGTGAGAG+TGG - chr5_4:46452711-46452730 None:intergenic 50.0%
CGAGGACAAGGATGAGAAGA+TGG - chr5_4:46452720-46452739 None:intergenic 50.0%
!! GAGGTGTTGTTACGAGGACA+AGG - chr5_4:46452732-46452751 None:intergenic 50.0%
GCTCTGATGGTCAAGACTTG+TGG + chr5_4:46453885-46453904 Msa0854190:CDS 50.0%
GATGGTCAAGACTTGTGGAC+TGG + chr5_4:46453890-46453909 Msa0854190:CDS 50.0%
GAAAGGTGGAGCTGTGTTTC+AGG + chr5_4:46454411-46454430 Msa0854190:CDS 50.0%
CAAGAAGTCATTGGGGACCT+TGG + chr5_4:46455146-46455165 Msa0854190:CDS 50.0%
AGGCCGAAAGAGGATTGATC+GGG - chr5_4:46455465-46455484 None:intergenic 50.0%
CAGGCCGAAAGAGGATTGAT+CGG - chr5_4:46455466-46455485 None:intergenic 50.0%
!! AAGGCATGGTGTTGCACTCA+AGG + chr5_4:46455511-46455530 Msa0854190:CDS 50.0%
TGATGCTAAGGCAATGGTGG+TGG + chr5_4:46456549-46456568 Msa0854190:CDS 50.0%
GATGCTAAGGCAATGGTGGT+GGG + chr5_4:46456550-46456569 Msa0854190:CDS 50.0%
AGCATATGGCGCGTAGATGT+TGG + chr5_4:46456839-46456858 Msa0854190:CDS 50.0%
CAATCCAAACAGGCCCTAGT+GGG + chr5_4:46457842-46457861 Msa0854190:intron 50.0%
TTATCCCACTAGGGCCTGTT+TGG - chr5_4:46457849-46457868 None:intergenic 50.0%
TTGTTAAATGGAGGCCACGG+CGG + chr5_4:46458019-46458038 Msa0854190:intron 50.0%
CAGACCATTGCAGCCTATGA+TGG - chr5_4:46458096-46458115 None:intergenic 50.0%
!! CGATGACGGATGGTGGAATA+TGG - chr5_4:46458136-46458155 None:intergenic 50.0%
!! ACAGTGTTGTCGATGACGGA+TGG - chr5_4:46458146-46458165 None:intergenic 50.0%
CACACAAACCAAGCCTATGG+GGG - chr5_4:46458248-46458267 None:intergenic 50.0%
TTGCAGAATTGCGGGCATAC+AGG + chr5_4:46458316-46458335 Msa0854190:intron 50.0%
! GCTGGTGTGTTGAGCTCTGA+TGG + chr5_4:46453872-46453891 Msa0854190:CDS 55.0%
!! GGTCAAGACTTGTGGACTGG+TGG + chr5_4:46453893-46453912 Msa0854190:CDS 55.0%
CCAATGATCGCAGCAAGGAC+AGG - chr5_4:46454375-46454394 None:intergenic 55.0%
CCTGTCCTTGCTGCGATCAT+TGG + chr5_4:46454372-46454391 Msa0854190:CDS 55.0%
CGATCAATCCTCTTTCGGCC+TGG + chr5_4:46455464-46455483 Msa0854190:CDS 55.0%
TCAATCCTCTTTCGGCCTGG+TGG + chr5_4:46455467-46455486 Msa0854190:CDS 55.0%
CAATCCTCTTTCGGCCTGGT+GGG + chr5_4:46455468-46455487 Msa0854190:CDS 55.0%
GACTGGGTCTTCTGTCATGG+CGG + chr5_4:46455539-46455558 Msa0854190:CDS 55.0%
ACTGACCGTGGTGAGGAAGA+AGG - chr5_4:46455565-46455584 None:intergenic 55.0%
TGTCAGTGCAGTGTCGTGTC+TGG - chr5_4:46456258-46456277 None:intergenic 55.0%
CCACTAGGGCCTGTTTGGAT+TGG - chr5_4:46457844-46457863 None:intergenic 55.0%
CCAATCCAAACAGGCCCTAG+TGG + chr5_4:46457841-46457860 Msa0854190:intron 55.0%
TGTTAAATGGAGGCCACGGC+GGG + chr5_4:46458020-46458039 Msa0854190:intron 55.0%
TTGAGAAGGGATGCCTGCCA+TGG + chr5_4:46458068-46458087 Msa0854190:intron 55.0%
TGCAGCCTATGATGGCACCA+TGG - chr5_4:46458088-46458107 None:intergenic 55.0%
! GGTGCCATCATAGGCTGCAA+TGG + chr5_4:46458089-46458108 Msa0854190:intron 55.0%
!! GTGTTGTCGATGACGGATGG+TGG - chr5_4:46458143-46458162 None:intergenic 55.0%
ACTAACCGAGATGCCCCCAT+AGG + chr5_4:46458232-46458251 Msa0854190:intron 55.0%
! CTCCAGCAGCAGACCCATTT+TGG + chr5_4:46458427-46458446 Msa0854190:three_prime_UTR 55.0%
TGCCAAAATGGGTCTGCTGC+TGG - chr5_4:46458432-46458451 None:intergenic 55.0%
CCAGCGAGAATAGTGCGACC+AGG - chr5_4:46452879-46452898 None:intergenic 60.0%
CCTGGTCGCACTATTCTCGC+TGG + chr5_4:46452876-46452895 Msa0854190:CDS 60.0%
CTTGCAAGCTCACACGCCAG+TGG - chr5_4:46455494-46455513 None:intergenic 60.0%
CACTGGCGTGTGAGCTTGCA+AGG + chr5_4:46455492-46455511 Msa0854190:CDS 60.0%
GCGTGTGAGCTTGCAAGGCA+TGG + chr5_4:46455497-46455516 Msa0854190:CDS 60.0%
GGCTGTCAAAAAACCCGCCG+TGG - chr5_4:46458036-46458055 None:intergenic 60.0%
!! GCCTGCCATGGTGCCATCAT+AGG + chr5_4:46458080-46458099 Msa0854190:intron 60.0%
GCCTATGATGGCACCATGGC+AGG - chr5_4:46458084-46458103 None:intergenic 60.0%
!! CCAAGCCTATGGGGGCATCT+CGG - chr5_4:46458240-46458259 None:intergenic 60.0%
GGCGGCCTTCTTCCTCACCA+CGG + chr5_4:46455557-46455576 Msa0854190:CDS 65.0%
CCGAGATGCCCCCATAGGCT+TGG + chr5_4:46458237-46458256 Msa0854190:intron 65.0%
GTGGCCCACCAGGCCGAAAG+AGG - chr5_4:46455475-46455494 None:intergenic 70.0%
! CTTTCGGCCTGGTGGGCCAC+TGG + chr5_4:46455475-46455494 Msa0854190:CDS 70.0%
TCACACGCCAGTGGCCCACC+AGG - chr5_4:46455485-46455504 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 46452541 46458796 46452541 ID=Msa0854190;Name=Msa0854190
chr5_4 mRNA 46452541 46458796 46452541 ID=Msa0854190-mRNA-1;Parent=Msa0854190;Name=Msa0854190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=134|0.88|0.8|1|0.88|0.8|10|498|420
chr5_4 exon 46452541 46452897 46452541 ID=Msa0854190-mRNA-1:exon:14703;Parent=Msa0854190-mRNA-1
chr5_4 exon 46453822 46453922 46453822 ID=Msa0854190-mRNA-1:exon:14704;Parent=Msa0854190-mRNA-1
chr5_4 exon 46454319 46454432 46454319 ID=Msa0854190-mRNA-1:exon:14705;Parent=Msa0854190-mRNA-1
chr5_4 exon 46454968 46455180 46454968 ID=Msa0854190-mRNA-1:exon:14706;Parent=Msa0854190-mRNA-1
chr5_4 exon 46455438 46455578 46455438 ID=Msa0854190-mRNA-1:exon:14707;Parent=Msa0854190-mRNA-1
chr5_4 exon 46455885 46456109 46455885 ID=Msa0854190-mRNA-1:exon:14708;Parent=Msa0854190-mRNA-1
chr5_4 exon 46456514 46456602 46456514 ID=Msa0854190-mRNA-1:exon:14709;Parent=Msa0854190-mRNA-1
chr5_4 exon 46456826 46456895 46456826 ID=Msa0854190-mRNA-1:exon:14710;Parent=Msa0854190-mRNA-1
chr5_4 exon 46456982 46457091 46456982 ID=Msa0854190-mRNA-1:exon:14711;Parent=Msa0854190-mRNA-1
chr5_4 exon 46458322 46458796 46458322 ID=Msa0854190-mRNA-1:exon:14712;Parent=Msa0854190-mRNA-1
chr5_4 five_prime_UTR 46452541 46452674 46452541 ID=Msa0854190-mRNA-1:five_prime_utr;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46452675 46452897 46452675 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46453822 46453922 46453822 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46454319 46454432 46454319 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46454968 46455180 46454968 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46455438 46455578 46455438 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46455885 46456109 46455885 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46456514 46456602 46456514 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46456826 46456895 46456826 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 CDS 46456982 46457068 46456982 ID=Msa0854190-mRNA-1:cds;Parent=Msa0854190-mRNA-1
chr5_4 three_prime_UTR 46457069 46457091 46457069 ID=Msa0854190-mRNA-1:three_prime_utr;Parent=Msa0854190-mRNA-1
chr5_4 three_prime_UTR 46458322 46458796 46458322 ID=Msa0854190-mRNA-1:three_prime_utr;Parent=Msa0854190-mRNA-1
Gene Sequence

>Msa0854190

ATGGCAGCATCTCTATGTATGAACTCAACAGTACCACTCTCACCATCTTCTCATCCTTGTCCTCGTAACAACACCTCTCTTTCTTCTTCTTCTTTGCTTGTTGATAACAACACCAACAATAATCACAATAGCCTTAAAACATCATCAAGTAGTTTGAAACCTATTGTTGTTATTGGTGACCCACCAACTTTTGTTTCTGCTCCTGGTCGCACTATTCTCGCTGTTGGAGATTTACATGGAGATCTTAAGCAAGCTAGATATGCACTTGAAATGGCTGGTGTGTTGAGCTCTGATGGTCAAGACTTGTGGACTGGTGGCGAAAATGTGTTGATTCAACTTGGAGATATATTAGATCGAGGTGAAGATGAAATTGCTATCCTGTCCTTGCTGCGATCATTGGATAAACAAGCGAAATTGAAAGGTGGAGCTGTGTTTCAGGTAAATGGAAACCATGAGACCATGAATGTGGAAGGGGATTTCAGATATGTTGATTCTGGAGGATTTGATGAATGTAGTGATTTCTTGGAATATATCAATAATTCTGAAGATGACTGGGAAGAAACATTTACCGGTTGGGTTGATGTATCTGAGAAGTGGAAAGAAGATCGAACAAAGTCAAGAAGTCATTGGGGACCTTGGAATTTAGTGAAGGACAGAGACAAAAGGGAGTCATTGCCCGATCAATCCTCTTTCGGCCTGGTGGGCCACTGGCGTGTGAGCTTGCAAGGCATGGTGTTGCACTCAAGGTTAATGACTGGGTCTTCTGTCATGGCGGCCTTCTTCCTCACCACGAAGCCTGGTAATATTATCTTCATCCTTTTTGTCTCTTCATTTTCTGTAGTTGCGTATGGTTTAGAGCGGATGAACAAAGAAGTGTCTGTGTGGATGAGAGATCCAAGTGAGAATGACAGTACTGTCCAAATTCCTTTCATTGCCACTAGGGGTTATGACAGTGTTGTTTGGAATCGGTTATACTCAAGAGACTCACCAGATTTGATGGATTATGAGGCTAAACAGGTATGTTCCGTTCTTGAAGAAACGCTGCAAGCAGTTGATGCTAAGGCAATGGTGGTGGGACATACTCCTCAAACTGTTGGGGTAAATTGTAAATACAATTGCAGCATATGGCGCGTAGATGTTGGAATGTCCAGTGGAGTCCTTAATTCAAGACCAGAGGTTCTAGAAATTATAGACGATAAAGCCAGAGTTATAAGGAGCAAAACAGACAGATACAGTGAACTTCAGGCGGCTGCATATACTTAA

Protein sequence

>Msa0854190

MAASLCMNSTVPLSPSSHPCPRNNTSLSSSSLLVDNNTNNNHNSLKTSSSSLKPIVVIGDPPTFVSAPGRTILAVGDLHGDLKQARYALEMAGVLSSDGQDLWTGGENVLIQLGDILDRGEDEIAILSLLRSLDKQAKLKGGAVFQVNGNHETMNVEGDFRYVDSGGFDECSDFLEYINNSEDDWEETFTGWVDVSEKWKEDRTKSRSHWGPWNLVKDRDKRESLPDQSSFGLVGHWRVSLQGMVLHSRLMTGSSVMAAFFLTTKPGNIIFILFVSSFSVVAYGLERMNKEVSVWMRDPSENDSTVQIPFIATRGYDSVVWNRLYSRDSPDLMDYEAKQVCSVLEETLQAVDAKAMVVGHTPQTVGVNCKYNCSIWRVDVGMSSGVLNSRPEVLEIIDDKARVIRSKTDRYSELQAAAYT*