Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706320 | XP_013446935.1 | 76.256 | 219 | 10 | 1 | 1 | 177 | 1 | 219 | 7.57e-106 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706320 | sp|Q67YC9|Y4141_ARATH | 45.198 | 177 | 54 | 2 | 9 | 143 | 8 | 183 | 1.57e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706320 | A0A072TU64 | 76.256 | 219 | 10 | 1 | 1 | 177 | 1 | 219 | 3.62e-106 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa0706320 | 0.825970 | 3.506082e-54 | -8.615850e-47 |
| Msa0024070 | Msa0706320 | 0.805359 | 1.386511e-49 | -8.615850e-47 |
| Msa0037300 | Msa0706320 | 0.809505 | 1.830834e-50 | -8.615850e-47 |
| Msa0046800 | Msa0706320 | 0.813624 | 2.329451e-51 | -8.615850e-47 |
| Msa0058970 | Msa0706320 | 0.805475 | 1.311338e-49 | -8.615850e-47 |
| Msa0060720 | Msa0706320 | 0.800350 | 1.502012e-48 | -8.615850e-47 |
| Msa0083650 | Msa0706320 | 0.805174 | 1.516209e-49 | -8.615850e-47 |
| Msa0091550 | Msa0706320 | 0.815485 | 9.025625e-52 | -8.615850e-47 |
| Msa0115410 | Msa0706320 | 0.804648 | 1.953144e-49 | -8.615850e-47 |
| Msa0619870 | Msa0706320 | 0.850370 | 1.774140e-60 | -8.615850e-47 |
| Msa0620020 | Msa0706320 | 0.944617 | 1.402894e-103 | -8.615850e-47 |
| Msa0620050 | Msa0706320 | 0.811369 | 7.247549e-51 | -8.615850e-47 |
| Msa0624700 | Msa0706320 | 0.822050 | 2.913946e-53 | -8.615850e-47 |
| Msa0649140 | Msa0706320 | 0.804643 | 1.957203e-49 | -8.615850e-47 |
| Msa0652360 | Msa0706320 | 0.822714 | 2.043128e-53 | -8.615850e-47 |
| Msa0687740 | Msa0706320 | 0.801356 | 9.358179e-49 | -8.615850e-47 |
| Msa0695470 | Msa0706320 | 0.800064 | 1.717266e-48 | -8.615850e-47 |
| Msa0706320 | Msa0706450 | 0.939389 | 1.380276e-99 | -8.615850e-47 |
| Msa0706320 | Msa0706490 | 0.856674 | 2.743073e-62 | -8.615850e-47 |
| Msa0706320 | Msa0732100 | 0.816965 | 4.212675e-52 | -8.615850e-47 |
| Msa0706320 | Msa0748890 | 0.808171 | 3.530621e-50 | -8.615850e-47 |
| Msa0706320 | Msa0749940 | 0.821480 | 3.948821e-53 | -8.615850e-47 |
| Msa0706320 | Msa0773080 | 0.838075 | 3.567226e-57 | -8.615850e-47 |
| Msa0706320 | Msa0775970 | 0.813539 | 2.432085e-51 | -8.615850e-47 |
| Msa0706320 | Msa0810370 | 0.845163 | 4.819420e-59 | -8.615850e-47 |
| Msa0706320 | Msa0823760 | 0.806826 | 6.812631e-50 | -8.615850e-47 |
| Msa0706320 | Msa0832270 | 0.813357 | 2.666762e-51 | -8.615850e-47 |
| Msa0706320 | Msa0866650 | 0.812339 | 4.455013e-51 | -8.615850e-47 |
| Msa0706320 | Msa0879820 | 0.817019 | 4.095860e-52 | -8.615850e-47 |
| Msa0706320 | Msa0893390 | 0.818137 | 2.293530e-52 | -8.615850e-47 |
| Msa0706320 | Msa0914780 | 0.808864 | 2.511804e-50 | -8.615850e-47 |
| Msa0706320 | Msa0970090 | 0.823396 | 1.416722e-53 | -8.615850e-47 |
| Msa0706320 | Msa1013560 | 0.802366 | 5.804265e-49 | -8.615850e-47 |
| Msa0706320 | Msa1033120 | 0.802858 | 4.595214e-49 | -8.615850e-47 |
| Msa0706320 | Msa1033250 | 0.802832 | 4.652637e-49 | -8.615850e-47 |
| Msa0706320 | Msa1035090 | 0.804015 | 2.645395e-49 | -8.615850e-47 |
| Msa0706320 | Msa1045440 | 0.809635 | 1.716881e-50 | -8.615850e-47 |
| Msa0706320 | Msa1054620 | 0.806165 | 9.390234e-50 | -8.615850e-47 |
| Msa0706320 | Msa1061310 | 0.825231 | 5.247710e-54 | -8.615850e-47 |
| Msa0706320 | Msa1067430 | 0.804464 | 2.133480e-49 | -8.615850e-47 |
| Msa0706320 | Msa1072850 | 0.807976 | 3.884897e-50 | -8.615850e-47 |
| Msa0706320 | Msa1074980 | 0.815776 | 7.773494e-52 | -8.615850e-47 |
| Msa0706320 | Msa1082760 | 0.818375 | 2.026030e-52 | -8.615850e-47 |
| Msa0706320 | Msa1084150 | 0.801129 | 1.041508e-48 | -8.615850e-47 |
| Msa0706320 | Msa1106580 | 0.803915 | 2.775448e-49 | -8.615850e-47 |
| Msa0706320 | Msa1121630 | 0.817654 | 2.947988e-52 | -8.615850e-47 |
| Msa0706320 | Msa1126310 | 0.821888 | 3.177277e-53 | -8.615850e-47 |
| Msa0706320 | Msa1127510 | 0.800863 | 1.180378e-48 | -8.615850e-47 |
| Msa0706320 | Msa1128200 | 0.837737 | 4.356860e-57 | -8.615850e-47 |
| Msa0706320 | Msa1132820 | 0.803175 | 3.952036e-49 | -8.615850e-47 |
| Msa0706320 | Msa1137610 | 0.817576 | 3.069130e-52 | -8.615850e-47 |
| Msa0706320 | Msa1149960 | 0.844016 | 9.811649e-59 | -8.615850e-47 |
| Msa0706320 | Msa1154020 | 0.803419 | 3.517435e-49 | -8.615850e-47 |
| Msa0706320 | Msa1167160 | 0.818962 | 1.490910e-52 | -8.615850e-47 |
| Msa0706320 | Msa1177960 | 0.811559 | 6.589422e-51 | -8.615850e-47 |
| Msa0706320 | Msa1183760 | 0.801847 | 7.421032e-49 | -8.615850e-47 |
| Msa0706320 | Msa1189630 | 0.800970 | 1.122340e-48 | -8.615850e-47 |
| Msa0706320 | Msa1202730 | 0.813002 | 3.191310e-51 | -8.615850e-47 |
| Msa0706320 | Msa1206500 | 0.821409 | 4.099689e-53 | -8.615850e-47 |
| Msa0706320 | Msa1208630 | 0.818123 | 2.309965e-52 | -8.615850e-47 |
| Msa0706320 | Msa1208750 | 0.813456 | 2.536627e-51 | -8.615850e-47 |
| Msa0706320 | Msa1214080 | 0.846140 | 2.619108e-59 | -8.615850e-47 |
| Msa0706320 | Msa1239900 | 0.801738 | 7.815290e-49 | -8.615850e-47 |
| Msa0706320 | Msa1244380 | 0.801818 | 7.523370e-49 | -8.615850e-47 |
| Msa0706320 | Msa1250500 | 0.864883 | 8.823113e-65 | -8.615850e-47 |
| Msa0706320 | Msa1264670 | 0.820731 | 5.874462e-53 | -8.615850e-47 |
| Msa0706320 | Msa1267560 | 0.829390 | 5.286330e-55 | -8.615850e-47 |
| Msa0706320 | Msa1269550 | 0.803656 | 3.141435e-49 | -8.615850e-47 |
| Msa0706320 | Msa1279700 | 0.848321 | 6.603734e-60 | -8.615850e-47 |
| Msa0706320 | Msa1297500 | 0.867938 | 9.462722e-66 | -8.615850e-47 |
| Msa0706320 | Msa1297560 | 0.846529 | 2.050746e-59 | -8.615850e-47 |
| Msa0706320 | Msa1298180 | 0.837122 | 6.260863e-57 | -8.615850e-47 |
| Msa0706320 | Msa1305650 | 0.809029 | 2.315676e-50 | -8.615850e-47 |
| Msa0706320 | Msa1318180 | 0.802379 | 5.769678e-49 | -8.615850e-47 |
| Msa0706320 | Msa1346890 | 0.816931 | 4.288570e-52 | -8.615850e-47 |
| Msa0706320 | Msa1349720 | 0.817577 | 3.067676e-52 | -8.615850e-47 |
| Msa0706320 | Msa1375600 | 0.830219 | 3.321517e-55 | -8.615850e-47 |
| Msa0706320 | Msa1376560 | 0.841309 | 5.139135e-58 | -8.615850e-47 |
| Msa0706320 | Msa1398840 | 0.822495 | 2.298225e-53 | -8.615850e-47 |
| Msa0706320 | Msa1400830 | 0.810808 | 9.586022e-51 | -8.615850e-47 |
| Msa0706320 | Msa1410360 | 0.802009 | 6.876120e-49 | -8.615850e-47 |
| Msa0706320 | Msa1411390 | 0.812243 | 4.676778e-51 | -8.615850e-47 |
| Msa0706320 | Msa1415250 | 0.814346 | 1.614817e-51 | -8.615850e-47 |
| Msa0706320 | Msa1418600 | 0.805687 | 1.183328e-49 | -8.615850e-47 |
| Msa0706320 | Msa1424240 | 0.801517 | 8.675459e-49 | -8.615850e-47 |
| Msa0706320 | Msa1426880 | 0.866078 | 3.707422e-65 | -8.615850e-47 |
| Msa0706320 | Msa1429390 | 0.804973 | 1.670544e-49 | -8.615850e-47 |
| Msa0706320 | Msa1437320 | 0.801191 | 1.011491e-48 | -8.615850e-47 |
| Msa0706320 | Msa1439880 | 0.810932 | 9.014925e-51 | -8.615850e-47 |
| Msa0706320 | Msa1442030 | 0.803927 | 2.759921e-49 | -8.615850e-47 |
| Msa0706320 | Msa1444750 | 0.812010 | 5.256242e-51 | -8.615850e-47 |
| Msa0706320 | Msa1455120 | 0.813367 | 2.653115e-51 | -8.615850e-47 |
| Msa0706320 | Msa1455560 | 0.855928 | 4.537038e-62 | -8.615850e-47 |
| Msa0706320 | Msa1456390 | 0.801378 | 9.261421e-49 | -8.615850e-47 |
| Msa0706320 | Msa1460650 | 0.802107 | 6.563578e-49 | -8.615850e-47 |
| Msa0143490 | Msa0706320 | 0.812730 | 3.660689e-51 | -8.615850e-47 |
| Msa0151790 | Msa0706320 | 0.813723 | 2.215712e-51 | -8.615850e-47 |
| Msa0155550 | Msa0706320 | 0.805174 | 1.516002e-49 | -8.615850e-47 |
| Msa0175280 | Msa0706320 | 0.800554 | 1.364756e-48 | -8.615850e-47 |
| Msa0178020 | Msa0706320 | 0.811667 | 6.242285e-51 | -8.615850e-47 |
| Msa0179200 | Msa0706320 | 0.806960 | 6.383202e-50 | -8.615850e-47 |
| Msa0216390 | Msa0706320 | 0.842012 | 3.352518e-58 | -8.615850e-47 |
| Msa0236330 | Msa0706320 | 0.810914 | 9.096325e-51 | -8.615850e-47 |
| Msa0236350 | Msa0706320 | 0.811559 | 6.589364e-51 | -8.615850e-47 |
| Msa0365110 | Msa0706320 | 0.808548 | 2.934597e-50 | -8.615850e-47 |
| Msa0367370 | Msa0706320 | 0.806740 | 7.101664e-50 | -8.615850e-47 |
| Msa0368430 | Msa0706320 | 0.830258 | 3.249017e-55 | -8.615850e-47 |
| Msa0369770 | Msa0706320 | 0.817101 | 3.927282e-52 | -8.615850e-47 |
| Msa0376760 | Msa0706320 | 0.811726 | 6.061091e-51 | -8.615850e-47 |
| Msa0379390 | Msa0706320 | 0.816982 | 4.175602e-52 | -8.615850e-47 |
| Msa0379450 | Msa0706320 | 0.854085 | 1.556282e-61 | -8.615850e-47 |
| Msa0380390 | Msa0706320 | 0.811880 | 5.612059e-51 | -8.615850e-47 |
| Msa0380440 | Msa0706320 | 0.818036 | 2.416409e-52 | -8.615850e-47 |
| Msa0383110 | Msa0706320 | 0.805431 | 1.339296e-49 | -8.615850e-47 |
| Msa0393880 | Msa0706320 | 0.805891 | 1.072538e-49 | -8.615850e-47 |
| Msa0399180 | Msa0706320 | 0.821930 | 3.107017e-53 | -8.615850e-47 |
| Msa0412470 | Msa0706320 | 0.832522 | 9.010008e-56 | -8.615850e-47 |
| Msa0415860 | Msa0706320 | 0.811424 | 7.051525e-51 | -8.615850e-47 |
| Msa0417140 | Msa0706320 | 0.805650 | 1.205139e-49 | -8.615850e-47 |
| Msa0420100 | Msa0706320 | 0.800682 | 1.285281e-48 | -8.615850e-47 |
| Msa0430290 | Msa0706320 | 0.800551 | 1.366532e-48 | -8.615850e-47 |
| Msa0438990 | Msa0706320 | 0.817475 | 3.235381e-52 | -8.615850e-47 |
| Msa0441670 | Msa0706320 | 0.815311 | 9.864729e-52 | -8.615850e-47 |
| Msa0444340 | Msa0706320 | 0.802997 | 4.301722e-49 | -8.615850e-47 |
| Msa0457750 | Msa0706320 | 0.808186 | 3.504454e-50 | -8.615850e-47 |
| Msa0463980 | Msa0706320 | 0.823430 | 1.391028e-53 | -8.615850e-47 |
| Msa0466070 | Msa0706320 | 0.801553 | 8.528980e-49 | -8.615850e-47 |
| Msa0471700 | Msa0706320 | 0.813649 | 2.300185e-51 | -8.615850e-47 |
| Msa0475130 | Msa0706320 | 0.838085 | 3.545394e-57 | -8.615850e-47 |
| Msa0480150 | Msa0706320 | 0.800240 | 1.581325e-48 | -8.615850e-47 |
| Msa0247310 | Msa0706320 | 0.817436 | 3.300434e-52 | -8.615850e-47 |
| Msa0256590 | Msa0706320 | 0.835652 | 1.481494e-56 | -8.615850e-47 |
| Msa0266100 | Msa0706320 | 0.822518 | 2.270126e-53 | -8.615850e-47 |
| Msa0274870 | Msa0706320 | 0.809749 | 1.622197e-50 | -8.615850e-47 |
| Msa0280120 | Msa0706320 | 0.805416 | 1.349102e-49 | -8.615850e-47 |
| Msa0288350 | Msa0706320 | 0.812361 | 4.406411e-51 | -8.615850e-47 |
| Msa0288360 | Msa0706320 | 0.803044 | 4.207088e-49 | -8.615850e-47 |
| Msa0295730 | Msa0706320 | 0.856320 | 3.483775e-62 | -8.615850e-47 |
| Msa0308430 | Msa0706320 | 0.800626 | 1.319682e-48 | -8.615850e-47 |
| Msa0311910 | Msa0706320 | 0.804424 | 2.174412e-49 | -8.615850e-47 |
| Msa0313550 | Msa0706320 | 0.815270 | 1.007477e-51 | -8.615850e-47 |
| Msa0334280 | Msa0706320 | 0.830073 | 3.605741e-55 | -8.615850e-47 |
| Msa0335740 | Msa0706320 | 0.806361 | 8.538021e-50 | -8.615850e-47 |
| Msa0347060 | Msa0706320 | 0.800151 | 1.648604e-48 | -8.615850e-47 |
| Msa0347280 | Msa0706320 | 0.810148 | 1.331509e-50 | -8.615850e-47 |
| Msa0486200 | Msa0706320 | 0.821296 | 4.354173e-53 | -8.615850e-47 |
| Msa0489330 | Msa0706320 | 0.809797 | 1.584026e-50 | -8.615850e-47 |
| Msa0493550 | Msa0706320 | 0.812603 | 3.901094e-51 | -8.615850e-47 |
| Msa0504740 | Msa0706320 | 0.822146 | 2.769134e-53 | -8.615850e-47 |
| Msa0506740 | Msa0706320 | 0.807661 | 4.531868e-50 | -8.615850e-47 |
| Msa0509530 | Msa0706320 | 0.818363 | 2.038733e-52 | -8.615850e-47 |
| Msa0515730 | Msa0706320 | 0.821135 | 4.743203e-53 | -8.615850e-47 |
| Msa0575670 | Msa0706320 | 0.830826 | 2.359549e-55 | -8.615850e-47 |
| Msa0600940 | Msa0706320 | 0.811875 | 5.624372e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706320 | MtrunA17_Chr8g0385631 | 76.256 | 219 | 10 | 1 | 1 | 177 | 1 | 219 | 6.97e-110 | 312 |
| Msa0706320 | MtrunA17_Chr8g0385601 | 63.063 | 222 | 38 | 2 | 1 | 178 | 1 | 222 | 1.70e-94 | 273 |
| Msa0706320 | MtrunA17_Chr3g0131541 | 50.000 | 188 | 45 | 4 | 1 | 143 | 1 | 184 | 3.10e-55 | 173 |
| Msa0706320 | MtrunA17_Chr8g0385611 | 75.652 | 115 | 28 | 0 | 1 | 115 | 1 | 115 | 3.30e-54 | 169 |
| Msa0706320 | MtrunA17_Chr3g0131551 | 47.090 | 189 | 55 | 2 | 1 | 144 | 7 | 195 | 6.85e-52 | 165 |
| Msa0706320 | MtrunA17_Chr8g0385621 | 75.000 | 56 | 11 | 2 | 116 | 169 | 1 | 55 | 1.03e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706320 | AT3G23760.1 | 50.000 | 168 | 41 | 2 | 22 | 147 | 26 | 192 | 4.70e-52 | 165 |
| Msa0706320 | AT4G14100.1 | 45.198 | 177 | 54 | 2 | 9 | 143 | 8 | 183 | 1.60e-51 | 164 |
Find 55 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGCCACGGCGTTGGAAT+TGG | 0.214822 | 4_4:-79291680 | None:intergenic |
| CTTCGTCCCAATTGGCTTGA+TGG | 0.251154 | 4_4:+79291917 | Msa0706320:CDS |
| CGTTGGAATTGGGTCGTCTT+TGG | 0.260275 | 4_4:-79291669 | None:intergenic |
| AATGTTGAAGTTGCGTCCTT+TGG | 0.308667 | 4_4:-79291774 | None:intergenic |
| AGCAGCTTCTAAATCTAATA+AGG | 0.316448 | 4_4:-79292625 | None:intergenic |
| TGAGAACACCAAGCTGATAT+TGG | 0.332979 | 4_4:-79291799 | None:intergenic |
| CCGGCCACGGCGTTGGAATT+GGG | 0.346904 | 4_4:-79291679 | None:intergenic |
| TGCCGCTTCTGTTTATGAAT+AGG | 0.369449 | 4_4:-79291718 | None:intergenic |
| TATAAACCGTACGCTATTGC+TGG | 0.386737 | 4_4:-79292698 | None:intergenic |
| TGGGTATTCTTCGTCCCAAT+TGG | 0.401532 | 4_4:+79291909 | Msa0706320:CDS |
| TTCTCAAATACGACCTTGAA+TGG | 0.403268 | 4_4:+79291816 | Msa0706320:CDS |
| ATGTTGAAGTTGCGTCCTTT+GGG | 0.414721 | 4_4:-79291773 | None:intergenic |
| GTTAGCACCATCAAGCCAAT+TGG | 0.414933 | 4_4:-79291924 | None:intergenic |
| AGGACTGAATGAAACTGTTC+CGG | 0.452659 | 4_4:-79291698 | None:intergenic |
| AGGTGCCATTGTTCCATTCA+AGG | 0.452905 | 4_4:-79291829 | None:intergenic |
| CCCAATTCCAACGCCGTGGC+CGG | 0.458323 | 4_4:+79291679 | Msa0706320:CDS |
| AACTGTTCCGGCCACGGCGT+TGG | 0.477557 | 4_4:-79291686 | None:intergenic |
| AACCAAAGATACAGAAAAGA+AGG | 0.480532 | 4_4:+79292595 | Msa0706320:CDS |
| ATTTGAGGTTGGTGCAGTGC+TGG | 0.481969 | 4_4:+79292521 | Msa0706320:CDS |
| ATGTTGAGAGATGGAAGAAG+AGG | 0.484687 | 4_4:-79291643 | None:intergenic |
| TCTCAAGACCACAGAGTAGT+AGG | 0.485162 | 4_4:-79294659 | None:intergenic |
| TTTGTCACAGCTAGTGCATA+GGG | 0.487513 | 4_4:+79294694 | Msa0706320:three_prime_UTR |
| TTAGAAGCTGCTGTTGGTGG+TGG | 0.492112 | 4_4:+79292636 | Msa0706320:CDS |
| TAGCTGTTGGAAGTTAAGGC+AGG | 0.514518 | 4_4:+79294604 | Msa0706320:three_prime_UTR |
| TTAGCACCATCAAGCCAATT+GGG | 0.514645 | 4_4:-79291923 | None:intergenic |
| AAACCGACCTATGGTACGAT+TGG | 0.517325 | 4_4:+79291750 | Msa0706320:CDS |
| TGCTCATGTGATGACATTTG+AGG | 0.519002 | 4_4:+79292506 | Msa0706320:CDS |
| AACATTATCCAATATCAGCT+TGG | 0.519327 | 4_4:+79291791 | Msa0706320:CDS |
| GATTTAGAAGCTGCTGTTGG+TGG | 0.522659 | 4_4:+79292633 | Msa0706320:CDS |
| GAATGAAACTGTTCCGGCCA+CGG | 0.527864 | 4_4:-79291692 | None:intergenic |
| GGAATAAAATTAAACTCTGA+TGG | 0.530319 | 4_4:+79294625 | Msa0706320:three_prime_UTR |
| CTATGGTACGATTGGCCCAA+AGG | 0.539339 | 4_4:+79291758 | Msa0706320:CDS |
| CTTTGGGCCAATCGTACCAT+AGG | 0.551684 | 4_4:-79291757 | None:intergenic |
| AGGGTCGAGAGTATAGAGAA+AGG | 0.556535 | 4_4:-79291852 | None:intergenic |
| GCTGGACGATGAGCATTGGC+AGG | 0.560605 | 4_4:+79292539 | Msa0706320:CDS |
| CTTTGGTTGATGTTGAGAGA+TGG | 0.562566 | 4_4:-79291652 | None:intergenic |
| AATACGTTCTTCTGTGGCAG+AGG | 0.569209 | 4_4:-79291600 | None:intergenic |
| TTAGATTTAGAAGCTGCTGT+TGG | 0.576944 | 4_4:+79292630 | Msa0706320:CDS |
| CACTGACACATAATAAGAGA+TGG | 0.579462 | 4_4:-79294766 | None:intergenic |
| CATGTGATGACATTTGAGGT+TGG | 0.580197 | 4_4:+79292510 | Msa0706320:CDS |
| ATAAACCGTACGCTATTGCT+GGG | 0.589811 | 4_4:-79292697 | None:intergenic |
| GGGCCAATCGTACCATAGGT+CGG | 0.598624 | 4_4:-79291753 | None:intergenic |
| GTCCTATTCATAAACAGAAG+CGG | 0.600560 | 4_4:+79291716 | Msa0706320:CDS |
| GCCTCACTAAAACAATAGAC+AGG | 0.605065 | 4_4:-79292564 | None:intergenic |
| AGCCACCCAGCAATAGCGTA+CGG | 0.609015 | 4_4:+79292692 | Msa0706320:exon |
| TACGACCTTGAATGGAACAA+TGG | 0.609959 | 4_4:+79291824 | Msa0706320:CDS |
| CAGTGCTGGACGATGAGCAT+TGG | 0.613309 | 4_4:+79292535 | Msa0706320:CDS |
| CAAACAAATACGTTCTTCTG+TGG | 0.631984 | 4_4:-79291606 | None:intergenic |
| GCGTACGGTTTATAATTGTG+AGG | 0.634966 | 4_4:+79292707 | Msa0706320:three_prime_UTR |
| TGACACATAATAAGAGATGG+AGG | 0.643361 | 4_4:-79294763 | None:intergenic |
| AACCGTACGCTATTGCTGGG+TGG | 0.669802 | 4_4:-79292694 | None:intergenic |
| GACACATAATAAGAGATGGA+GGG | 0.670822 | 4_4:-79294762 | None:intergenic |
| ACGACCCAATTCCAACGCCG+TGG | 0.695706 | 4_4:+79291675 | Msa0706320:CDS |
| GTCGAGAGTATAGAGAAAGG+AGG | 0.699354 | 4_4:-79291849 | None:intergenic |
| ACACTCAGCCTACTACTCTG+TGG | 0.725490 | 4_4:+79294651 | Msa0706320:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTTAAATAAATGATTT+TGG | - | chr4_4:79294510-79294529 | None:intergenic | 10.0% |
| !!! | AAAGTAATTTTCTTTTATAA+TGG | - | chr4_4:79294849-79294868 | None:intergenic | 10.0% |
| !! | TTGATTTAAGTATGTATTTA+TGG | + | chr4_4:79293947-79293966 | Msa0706320:intron | 15.0% |
| !! | ACACTACAATTTATAAAATA+TGG | - | chr4_4:79294557-79294576 | None:intergenic | 15.0% |
| !!! | ATACTTTTCTTTGTAATGTT+TGG | + | chr4_4:79291969-79291988 | Msa0706320:intron | 20.0% |
| !!! | TACTTTTCTTTGTAATGTTT+GGG | + | chr4_4:79291970-79291989 | Msa0706320:intron | 20.0% |
| !!! | TGATTTTATTTGGTATTATG+AGG | + | chr4_4:79292000-79292019 | Msa0706320:intron | 20.0% |
| !!! | ATAAAAGCATAATAACTAAC+CGG | - | chr4_4:79292065-79292084 | None:intergenic | 20.0% |
| !! | CAATAAAAAAAACTATGTGT+TGG | + | chr4_4:79292295-79292314 | Msa0706320:intron | 20.0% |
| !!! | TATATGTACTTTGTTTTGTT+GGG | + | chr4_4:79292761-79292780 | Msa0706320:intron | 20.0% |
| !!! | TCTTAATAAAAGCTTTGTTT+TGG | + | chr4_4:79292805-79292824 | Msa0706320:intron | 20.0% |
| !!! | CTTAATAAAAGCTTTGTTTT+GGG | + | chr4_4:79292806-79292825 | Msa0706320:intron | 20.0% |
| !! | TTCATTGTTAACTCATTTAT+TGG | + | chr4_4:79293659-79293678 | Msa0706320:intron | 20.0% |
| !! | AAAAACGAAACATAAAACAA+GGG | - | chr4_4:79293911-79293930 | None:intergenic | 20.0% |
| !! | AAAAAACGAAACATAAAACA+AGG | - | chr4_4:79293912-79293931 | None:intergenic | 20.0% |
| !!! | ATGGATATAATTTAAGATTG+TGG | + | chr4_4:79294130-79294149 | Msa0706320:intron | 20.0% |
| !! | TTTTGCAAGTGTGATTAAAA+GGG | - | chr4_4:79291874-79291893 | None:intergenic | 25.0% |
| !! | TTTTTGCAAGTGTGATTAAA+AGG | - | chr4_4:79291875-79291894 | None:intergenic | 25.0% |
| !!! | AAAAAGCTTCATTTTGATGT+GGG | + | chr4_4:79291890-79291909 | Msa0706320:CDS | 25.0% |
| ! | TGCTTCATAGTAAATTAACA+TGG | - | chr4_4:79292104-79292123 | None:intergenic | 25.0% |
| !!! | CTATATGTACTTTGTTTTGT+TGG | + | chr4_4:79292760-79292779 | Msa0706320:intron | 25.0% |
| !!! | CTTAATAGAAGCTTTGTTTT+TGG | + | chr4_4:79292877-79292896 | Msa0706320:intron | 25.0% |
| ! | AGACATAAAACATGCATATT+TGG | - | chr4_4:79292913-79292932 | None:intergenic | 25.0% |
| ! | ATCTTCTAATAGAATCTTGT+TGG | + | chr4_4:79292941-79292960 | Msa0706320:intron | 25.0% |
| !! | ATTAAATGAGACGTGTTTTT+GGG | - | chr4_4:79293254-79293273 | Msa0706330:intron | 25.0% |
| !! | AATTAAATGAGACGTGTTTT+TGG | - | chr4_4:79293255-79293274 | Msa0706330:intron | 25.0% |
| !!! | TGTTTTTTTGTGTCCATTTT+TGG | + | chr4_4:79293335-79293354 | Msa0706320:intron | 25.0% |
| ! | GAGATCAATGCATAAATATT+TGG | - | chr4_4:79293494-79293513 | Msa0706330:intron | 25.0% |
| !!! | TTTGTGTTGCTCATTTTTTT+TGG | + | chr4_4:79294237-79294256 | Msa0706320:intron | 25.0% |
| ! | CACAGTTTATTCTAGTAATT+TGG | + | chr4_4:79294294-79294313 | Msa0706320:intron | 25.0% |
| ! | ATTCTAGTAATTTGGTTGTA+CGG | + | chr4_4:79294302-79294321 | Msa0706320:intron | 25.0% |
| ! | TTGTCTGTGATATCAATATT+TGG | + | chr4_4:79294469-79294488 | Msa0706320:intron | 25.0% |
| !!! | GTGATATCAATATTTGGTTT+TGG | + | chr4_4:79294475-79294494 | Msa0706320:intron | 25.0% |
| ! | AAATTGTAGTGTTTATTGCA+TGG | + | chr4_4:79294565-79294584 | Msa0706320:intron | 25.0% |
| ! | GGAATAAAATTAAACTCTGA+TGG | + | chr4_4:79294625-79294644 | Msa0706320:three_prime_UTR | 25.0% |
| AACATTATCCAATATCAGCT+TGG | + | chr4_4:79291791-79291810 | Msa0706320:CDS | 30.0% | |
| !! | CAAAAAGCTTCATTTTGATG+TGG | + | chr4_4:79291889-79291908 | Msa0706320:CDS | 30.0% |
| !! | GGGAGAAAGTTGATTTTATT+TGG | + | chr4_4:79291990-79292009 | Msa0706320:intron | 30.0% |
| TAACATGGTACATCAGTTAA+AGG | - | chr4_4:79292089-79292108 | None:intergenic | 30.0% | |
| TGAGTGTAATTATATGTGTC+AGG | + | chr4_4:79292174-79292193 | Msa0706320:intron | 30.0% | |
| CATGTACTTTCTTCTTCATA+AGG | - | chr4_4:79292260-79292279 | None:intergenic | 30.0% | |
| !! | TTAGTTGTGTTGATAGTGAT+TGG | + | chr4_4:79292439-79292458 | Msa0706320:intron | 30.0% |
| AAGCCTGATATATGATATGA+TGG | + | chr4_4:79292463-79292482 | Msa0706320:intron | 30.0% | |
| CAACCATCATATCATATATC+AGG | - | chr4_4:79292469-79292488 | None:intergenic | 30.0% | |
| CTGATATATGATATGATGGT+TGG | + | chr4_4:79292467-79292486 | Msa0706320:intron | 30.0% | |
| AACCAAAGATACAGAAAAGA+AGG | + | chr4_4:79292595-79292614 | Msa0706320:CDS | 30.0% | |
| AGCAGCTTCTAAATCTAATA+AGG | - | chr4_4:79292628-79292647 | None:intergenic | 30.0% | |
| !!! | TGCAATGTACTTTGTTTTGT+TGG | + | chr4_4:79292831-79292850 | Msa0706320:intron | 30.0% |
| !!! | GCAATGTACTTTGTTTTGTT+GGG | + | chr4_4:79292832-79292851 | Msa0706320:intron | 30.0% |
| ACAAGACTCCAATTATAATG+CGG | - | chr4_4:79292970-79292989 | None:intergenic | 30.0% | |
| ! | CATTATAATTGGAGTCTTGT+TGG | + | chr4_4:79292970-79292989 | Msa0706320:intron | 30.0% |
| TTTCTTGCTTATAAAGCTTG+AGG | + | chr4_4:79293017-79293036 | Msa0706320:intron | 30.0% | |
| TTCTTGCTTATAAAGCTTGA+GGG | + | chr4_4:79293018-79293037 | Msa0706320:intron | 30.0% | |
| !! | TTAAATGAGACGTGTTTTTG+GGG | - | chr4_4:79293253-79293272 | Msa0706330:intron | 30.0% |
| ACTTAAAGTTGAAACATGCT+TGG | - | chr4_4:79293316-79293335 | Msa0706330:intron | 30.0% | |
| !!! | TTTTCCTACTGATTTCTACA+AGG | - | chr4_4:79293378-79293397 | Msa0706330:intron | 30.0% |
| CATTAACTGCTATGATAGAA+TGG | + | chr4_4:79293411-79293430 | Msa0706320:intron | 30.0% | |
| CTATTTGCAATCATCAATTG+CGG | - | chr4_4:79293469-79293488 | Msa0706330:intron | 30.0% | |
| ! | TCAAATTAAATCCCTTTTGG+CGG | - | chr4_4:79293987-79294006 | None:intergenic | 30.0% |
| ! | CCATCAAATTAAATCCCTTT+TGG | - | chr4_4:79293990-79294009 | None:intergenic | 30.0% |
| !! | CCAAAAGGGATTTAATTTGA+TGG | + | chr4_4:79293987-79294006 | Msa0706320:intron | 30.0% |
| AGCTAAAGATAAATAGCTTC+CGG | + | chr4_4:79294029-79294048 | Msa0706320:intron | 30.0% | |
| ATCATATGTTTGGATTCTAC+GGG | - | chr4_4:79294104-79294123 | None:intergenic | 30.0% | |
| GATCATATGTTTGGATTCTA+CGG | - | chr4_4:79294105-79294124 | None:intergenic | 30.0% | |
| CCATTTACTGATCATATGTT+TGG | - | chr4_4:79294114-79294133 | None:intergenic | 30.0% | |
| CCAAACATATGATCAGTAAA+TGG | + | chr4_4:79294111-79294130 | Msa0706320:intron | 30.0% | |
| ATTCTTCTACGTATGACAAA+GGG | - | chr4_4:79294167-79294186 | None:intergenic | 30.0% | |
| AATTCTTCTACGTATGACAA+AGG | - | chr4_4:79294168-79294187 | None:intergenic | 30.0% | |
| !!! | TTGCTCATTTTTTTTGGCTT+AGG | + | chr4_4:79294243-79294262 | Msa0706320:intron | 30.0% |
| !!! | TGCTCATTTTTTTTGGCTTA+GGG | + | chr4_4:79294244-79294263 | Msa0706320:intron | 30.0% |
| ! | GCTATGTAAAAGGCTTTTAA+GGG | - | chr4_4:79294382-79294401 | None:intergenic | 30.0% |
| ACATATTGTGGCTATGTAAA+AGG | - | chr4_4:79294392-79294411 | None:intergenic | 30.0% | |
| CAAACAAATACGTTCTTCTG+TGG | - | chr4_4:79291609-79291628 | None:intergenic | 35.0% | |
| GTCCTATTCATAAACAGAAG+CGG | + | chr4_4:79291716-79291735 | Msa0706320:CDS | 35.0% | |
| ATCTTCAAAAAACCGACCTA+TGG | + | chr4_4:79291741-79291760 | Msa0706320:CDS | 35.0% | |
| TTCTCAAATACGACCTTGAA+TGG | + | chr4_4:79291816-79291835 | Msa0706320:CDS | 35.0% | |
| !! | CTTGATGGTGCTAACTATTT+GGG | + | chr4_4:79291932-79291951 | Msa0706320:intron | 35.0% |
| TCACTAAAAGACCTGTTAAG+TGG | + | chr4_4:79292029-79292048 | Msa0706320:intron | 35.0% | |
| TTAAAGCAGTGTCATACATG+TGG | - | chr4_4:79292348-79292367 | None:intergenic | 35.0% | |
| !!! | TCCTGTCTATTGTTTTAGTG+AGG | + | chr4_4:79292563-79292582 | Msa0706320:CDS | 35.0% |
| !! | CTTTTCTGTATCTTTGGTTC+AGG | - | chr4_4:79292594-79292613 | None:intergenic | 35.0% |
| ! | CTCCTTCTTTTCTGTATCTT+TGG | - | chr4_4:79292600-79292619 | None:intergenic | 35.0% |
| TTAGATTTAGAAGCTGCTGT+TGG | + | chr4_4:79292630-79292649 | Msa0706320:CDS | 35.0% | |
| !!! | TACTTTGTTTTGTTGGGAGT+TGG | + | chr4_4:79292767-79292786 | Msa0706320:intron | 35.0% |
| !!! | ACTTTGTTTTGTTGGGAGTT+GGG | + | chr4_4:79292768-79292787 | Msa0706320:intron | 35.0% |
| !!! | TACTTTGTTTTGTTGGGAGT+TGG | + | chr4_4:79292767-79292786 | Msa0706320:intron | 35.0% |
| ! | TTATAAAGCTTGAGGGTATG+AGG | + | chr4_4:79293025-79293044 | Msa0706320:intron | 35.0% |
| GTAGCATTTGATGAAGAATG+AGG | + | chr4_4:79293074-79293093 | Msa0706320:intron | 35.0% | |
| ATACAGACACACCTAAAACT+CGG | - | chr4_4:79293171-79293190 | Msa0706330:CDS | 35.0% | |
| TATAAGTGTCCAATGAGTGT+AGG | - | chr4_4:79293212-79293231 | Msa0706330:intron | 35.0% | |
| !! | TTTTTGGGGACACTTATTTG+AGG | - | chr4_4:79293239-79293258 | Msa0706330:intron | 35.0% |
| CATGCTTAGTGAACCAAAAA+TGG | - | chr4_4:79293351-79293370 | Msa0706330:intron | 35.0% | |
| AGAGGAAATATGGATGAAAG+AGG | - | chr4_4:79293586-79293605 | Msa0706330:intron | 35.0% | |
| ACAATGAAAGAAAACGAGCA+AGG | - | chr4_4:79293647-79293666 | Msa0706330:intron | 35.0% | |
| ATTTATTGGACGTAGTGCTT+TGG | + | chr4_4:79293673-79293692 | Msa0706320:intron | 35.0% | |
| AACATAAAACAAGGGAGCTA+TGG | - | chr4_4:79293903-79293922 | None:intergenic | 35.0% | |
| GCTAAAGATAAATAGCTTCC+GGG | + | chr4_4:79294030-79294049 | Msa0706320:intron | 35.0% | |
| CTTAGGGTCAAATTTGTGTA+AGG | + | chr4_4:79294260-79294279 | Msa0706320:intron | 35.0% | |
| ! | GGCTATGTAAAAGGCTTTTA+AGG | - | chr4_4:79294383-79294402 | None:intergenic | 35.0% |
| GGTAACAGAATCACATATTG+TGG | - | chr4_4:79294404-79294423 | None:intergenic | 35.0% | |
| ATATGTGATTCTGTTACCAG+TGG | + | chr4_4:79294406-79294425 | Msa0706320:intron | 35.0% | |
| !! | CTTTTAGCTGTTGGAAGTTA+AGG | + | chr4_4:79294600-79294619 | Msa0706320:three_prime_UTR | 35.0% |
| GACACATAATAAGAGATGGA+GGG | - | chr4_4:79294765-79294784 | None:intergenic | 35.0% | |
| TGACACATAATAAGAGATGG+AGG | - | chr4_4:79294766-79294785 | None:intergenic | 35.0% | |
| CACTGACACATAATAAGAGA+TGG | - | chr4_4:79294769-79294788 | None:intergenic | 35.0% | |
| ATGTTGAGAGATGGAAGAAG+AGG | - | chr4_4:79291646-79291665 | None:intergenic | 40.0% | |
| ! | CTTTGGTTGATGTTGAGAGA+TGG | - | chr4_4:79291655-79291674 | None:intergenic | 40.0% |
| AGGACTGAATGAAACTGTTC+CGG | - | chr4_4:79291701-79291720 | None:intergenic | 40.0% | |
| ! | TGCCGCTTCTGTTTATGAAT+AGG | - | chr4_4:79291721-79291740 | None:intergenic | 40.0% |
| ATGTTGAAGTTGCGTCCTTT+GGG | - | chr4_4:79291776-79291795 | None:intergenic | 40.0% | |
| AATGTTGAAGTTGCGTCCTT+TGG | - | chr4_4:79291777-79291796 | None:intergenic | 40.0% | |
| TGAGAACACCAAGCTGATAT+TGG | - | chr4_4:79291802-79291821 | None:intergenic | 40.0% | |
| TACGACCTTGAATGGAACAA+TGG | + | chr4_4:79291824-79291843 | Msa0706320:CDS | 40.0% | |
| TTAGCACCATCAAGCCAATT+GGG | - | chr4_4:79291926-79291945 | None:intergenic | 40.0% | |
| !! | GCTTGATGGTGCTAACTATT+TGG | + | chr4_4:79291931-79291950 | Msa0706320:intron | 40.0% |
| GAGTAGAAGATCCACTTAAC+AGG | - | chr4_4:79292043-79292062 | None:intergenic | 40.0% | |
| GTTAAGTGGATCTTCTACTC+CGG | + | chr4_4:79292043-79292062 | Msa0706320:intron | 40.0% | |
| GTCGAATAGCTCAACTAGTT+TGG | + | chr4_4:79292196-79292215 | Msa0706320:intron | 40.0% | |
| TGCTCATGTGATGACATTTG+AGG | + | chr4_4:79292506-79292525 | Msa0706320:CDS | 40.0% | |
| ! | CATGTGATGACATTTGAGGT+TGG | + | chr4_4:79292510-79292529 | Msa0706320:CDS | 40.0% |
| GCCTCACTAAAACAATAGAC+AGG | - | chr4_4:79292567-79292586 | None:intergenic | 40.0% | |
| ATAAACCGTACGCTATTGCT+GGG | - | chr4_4:79292700-79292719 | None:intergenic | 40.0% | |
| TATAAACCGTACGCTATTGC+TGG | - | chr4_4:79292701-79292720 | None:intergenic | 40.0% | |
| GCGTACGGTTTATAATTGTG+AGG | + | chr4_4:79292707-79292726 | Msa0706320:three_prime_UTR | 40.0% | |
| GTTGGAAGCCGCATTATAAT+TGG | + | chr4_4:79292959-79292978 | Msa0706320:intron | 40.0% | |
| AAGAACTCCTGGCTCATATT+AGG | + | chr4_4:79293049-79293068 | Msa0706320:intron | 40.0% | |
| AGAACTCCTGGCTCATATTA+GGG | + | chr4_4:79293050-79293069 | Msa0706320:intron | 40.0% | |
| GCATTTGATGAAGAATGAGG+TGG | + | chr4_4:79293077-79293096 | Msa0706320:intron | 40.0% | |
| TGATGAAGAATGAGGTGGTT+TGG | + | chr4_4:79293082-79293101 | Msa0706320:intron | 40.0% | |
| TTGATCACAAGAGATGACGT+TGG | + | chr4_4:79293114-79293133 | Msa0706320:intron | 40.0% | |
| TAGAGGTGAATTAGTGGTGA+AGG | - | chr4_4:79293140-79293159 | Msa0706330:CDS | 40.0% | |
| GTGTGATAGAGGTGAATTAG+TGG | - | chr4_4:79293146-79293165 | Msa0706330:CDS | 40.0% | |
| TACAGACACACCTAAAACTC+GGG | - | chr4_4:79293170-79293189 | Msa0706330:CDS | 40.0% | |
| AGTTGGATACCTACACTCAT+TGG | + | chr4_4:79293200-79293219 | Msa0706320:intron | 40.0% | |
| TCTGCCTTGTAGAAATCAGT+AGG | + | chr4_4:79293371-79293390 | Msa0706320:intron | 40.0% | |
| AATATTTGTGCACGTGTCGA+TGG | - | chr4_4:79293441-79293460 | Msa0706330:intron | 40.0% | |
| GAGGACTTGAAGAGGAAATA+TGG | - | chr4_4:79293596-79293615 | Msa0706330:intron | 40.0% | |
| AACATAGAGGCAAAAACCCA+GGG | - | chr4_4:79293711-79293730 | Msa0706330:CDS | 40.0% | |
| AAACATAGAGGCAAAAACCC+AGG | - | chr4_4:79293712-79293731 | Msa0706330:CDS | 40.0% | |
| !! | TTTGTTGTTGACTGTAGCGT+GGG | + | chr4_4:79293778-79293797 | Msa0706320:intron | 40.0% |
| AGTGACAAAGTCATAGAGGA+AGG | - | chr4_4:79293814-79293833 | None:intergenic | 40.0% | |
| GATGAGTGACAAAGTCATAG+AGG | - | chr4_4:79293818-79293837 | None:intergenic | 40.0% | |
| GTACAAAGAGAATCTAGCCA+TGG | - | chr4_4:79293842-79293861 | None:intergenic | 40.0% | |
| ! | TTTGATGATACACCGCCAAA+AGG | + | chr4_4:79293972-79293991 | Msa0706320:intron | 40.0% |
| ! | TTGATGATACACCGCCAAAA+GGG | + | chr4_4:79293973-79293992 | Msa0706320:intron | 40.0% |
| TGAGCAACACAAACCTTAGA+GGG | - | chr4_4:79294230-79294249 | None:intergenic | 40.0% | |
| ATGAGCAACACAAACCTTAG+AGG | - | chr4_4:79294231-79294250 | None:intergenic | 40.0% | |
| GTTTATTGCATGGCCATTAC+AGG | + | chr4_4:79294575-79294594 | Msa0706320:intron | 40.0% | |
| !! | ACAGCTAAAAGCACCTGTAA+TGG | - | chr4_4:79294591-79294610 | None:intergenic | 40.0% |
| !! | TTACAGGTGCTTTTAGCTGT+TGG | + | chr4_4:79294591-79294610 | Msa0706320:intron | 40.0% |
| ! | TTTTGTCACAGCTAGTGCAT+AGG | + | chr4_4:79294693-79294712 | Msa0706320:three_prime_UTR | 40.0% |
| TTTGTCACAGCTAGTGCATA+GGG | + | chr4_4:79294694-79294713 | Msa0706320:three_prime_UTR | 40.0% | |
| AATACGTTCTTCTGTGGCAG+AGG | - | chr4_4:79291603-79291622 | None:intergenic | 45.0% | |
| AAACCGACCTATGGTACGAT+TGG | + | chr4_4:79291750-79291769 | Msa0706320:CDS | 45.0% | |
| !! | AGGTGCCATTGTTCCATTCA+AGG | - | chr4_4:79291832-79291851 | None:intergenic | 45.0% |
| ! | GTCGAGAGTATAGAGAAAGG+AGG | - | chr4_4:79291852-79291871 | None:intergenic | 45.0% |
| ! | AGGGTCGAGAGTATAGAGAA+AGG | - | chr4_4:79291855-79291874 | None:intergenic | 45.0% |
| TGGGTATTCTTCGTCCCAAT+TGG | + | chr4_4:79291909-79291928 | Msa0706320:CDS | 45.0% | |
| GTTAGCACCATCAAGCCAAT+TGG | - | chr4_4:79291927-79291946 | None:intergenic | 45.0% | |
| AAGCAGTGTCATACATGTGG+TGG | - | chr4_4:79292345-79292364 | None:intergenic | 45.0% | |
| !! | ATATGATGGTTGGTGAGTGC+AGG | + | chr4_4:79292477-79292496 | Msa0706320:intron | 45.0% |
| GATTTAGAAGCTGCTGTTGG+TGG | + | chr4_4:79292633-79292652 | Msa0706320:CDS | 45.0% | |
| GAACTCCTGGCTCATATTAG+GGG | + | chr4_4:79293051-79293070 | Msa0706320:intron | 45.0% | |
| AACTCCTGGCTCATATTAGG+GGG | + | chr4_4:79293052-79293071 | Msa0706320:intron | 45.0% | |
| ! | AAAACTCGGGAGTGTGATAG+AGG | - | chr4_4:79293157-79293176 | Msa0706330:CDS | 45.0% |
| ! | CTATCACACTCCCGAGTTTT+AGG | + | chr4_4:79293157-79293176 | Msa0706320:intron | 45.0% |
| GTCTGTATATCGACACGAGT+TGG | + | chr4_4:79293183-79293202 | Msa0706320:intron | 45.0% | |
| ATTGCATTTCTCTCATCGCC+AGG | + | chr4_4:79293522-79293541 | Msa0706320:intron | 45.0% | |
| TTGCATTTCTCTCATCGCCA+GGG | + | chr4_4:79293523-79293542 | Msa0706320:intron | 45.0% | |
| GTTTACTTCCCAGTCTCTTC+TGG | + | chr4_4:79293554-79293573 | Msa0706320:intron | 45.0% | |
| GAAGTCAAGAGGACTTGAAG+AGG | - | chr4_4:79293604-79293623 | Msa0706330:intron | 45.0% | |
| TTGACTTCTCACCAGGGATA+AGG | + | chr4_4:79293616-79293635 | Msa0706320:intron | 45.0% | |
| GCAAGGAAAAACCTTATCCC+TGG | - | chr4_4:79293630-79293649 | Msa0706330:intron | 45.0% | |
| !! | TTTGGTTCTATACTCTCCCC+TGG | + | chr4_4:79293691-79293710 | Msa0706320:intron | 45.0% |
| !! | TTGGTTCTATACTCTCCCCT+GGG | + | chr4_4:79293692-79293711 | Msa0706320:intron | 45.0% |
| ACATAGAGGCAAAAACCCAG+GGG | - | chr4_4:79293710-79293729 | Msa0706330:CDS | 45.0% | |
| AACAACATCAAAGCGCAGAG+AGG | - | chr4_4:79293736-79293755 | Msa0706330:CDS | 45.0% | |
| TCTGCGCTTTGATGTTGTTC+AGG | + | chr4_4:79293737-79293756 | Msa0706320:intron | 45.0% | |
| !! | CTTTGTTGTTGACTGTAGCG+TGG | + | chr4_4:79293777-79293796 | Msa0706320:intron | 45.0% |
| GACTTTGTCACTCATCACCA+TGG | + | chr4_4:79293822-79293841 | Msa0706320:intron | 45.0% | |
| ATAAATAGCTTCCGGGCATG+TGG | + | chr4_4:79294037-79294056 | Msa0706320:intron | 45.0% | |
| TTCCGGGCATGTGGTTAATT+TGG | + | chr4_4:79294046-79294065 | Msa0706320:intron | 45.0% | |
| GTCCAAATTAACCACATGCC+CGG | - | chr4_4:79294051-79294070 | None:intergenic | 45.0% | |
| CTACGTATGACAAAGGGAAC+AGG | - | chr4_4:79294161-79294180 | None:intergenic | 45.0% | |
| GAGATTGACATGTCCCTCTA+AGG | + | chr4_4:79294214-79294233 | Msa0706320:intron | 45.0% | |
| GTAAGATGCTAGATTGCCAC+TGG | - | chr4_4:79294425-79294444 | None:intergenic | 45.0% | |
| TAGCTGTTGGAAGTTAAGGC+AGG | + | chr4_4:79294604-79294623 | Msa0706320:three_prime_UTR | 45.0% | |
| TCTCAAGACCACAGAGTAGT+AGG | - | chr4_4:79294662-79294681 | None:intergenic | 45.0% | |
| CGTTGGAATTGGGTCGTCTT+TGG | - | chr4_4:79291672-79291691 | None:intergenic | 50.0% | |
| GAATGAAACTGTTCCGGCCA+CGG | - | chr4_4:79291695-79291714 | None:intergenic | 50.0% | |
| CTTTGGGCCAATCGTACCAT+AGG | - | chr4_4:79291760-79291779 | None:intergenic | 50.0% | |
| ! | CTATGGTACGATTGGCCCAA+AGG | + | chr4_4:79291758-79291777 | Msa0706320:CDS | 50.0% |
| !! | CTTCGTCCCAATTGGCTTGA+TGG | + | chr4_4:79291917-79291936 | Msa0706320:CDS | 50.0% |
| !! | ATTTGAGGTTGGTGCAGTGC+TGG | + | chr4_4:79292521-79292540 | Msa0706320:CDS | 50.0% |
| ! | TTAGAAGCTGCTGTTGGTGG+TGG | + | chr4_4:79292636-79292655 | Msa0706320:CDS | 50.0% |
| !!! | CTGTTGGTGGTGGTTTTCGT+GGG | + | chr4_4:79292646-79292665 | Msa0706320:CDS | 50.0% |
| GGGTATGAGGTAAGAACTCC+TGG | + | chr4_4:79293038-79293057 | Msa0706320:intron | 50.0% | |
| GGACAAAGCCAGAAGAGACT+GGG | - | chr4_4:79293565-79293584 | Msa0706330:intron | 50.0% | |
| AGGACAAAGCCAGAAGAGAC+TGG | - | chr4_4:79293566-79293585 | Msa0706330:intron | 50.0% | |
| AGTCCTCTTGACTTCTCACC+AGG | + | chr4_4:79293609-79293628 | Msa0706320:intron | 50.0% | |
| GTCCTCTTGACTTCTCACCA+GGG | + | chr4_4:79293610-79293629 | Msa0706320:intron | 50.0% | |
| ATCCCTGGTGAGAAGTCAAG+AGG | - | chr4_4:79293615-79293634 | Msa0706330:intron | 50.0% | |
| GCGCAGAGAGGAAAACATAG+AGG | - | chr4_4:79293724-79293743 | Msa0706330:CDS | 50.0% | |
| ACGCTCATTCTGCTACCACA+GGG | + | chr4_4:79293876-79293895 | Msa0706320:intron | 50.0% | |
| ACACTCAGCCTACTACTCTG+TGG | + | chr4_4:79294651-79294670 | Msa0706320:three_prime_UTR | 50.0% | |
| GGGCCAATCGTACCATAGGT+CGG | - | chr4_4:79291756-79291775 | None:intergenic | 55.0% | |
| ! | CAGTGCTGGACGATGAGCAT+TGG | + | chr4_4:79292535-79292554 | Msa0706320:CDS | 55.0% |
| !!! | GCTGTTGGTGGTGGTTTTCG+TGG | + | chr4_4:79292645-79292664 | Msa0706320:CDS | 55.0% |
| AGCCACCCAGCAATAGCGTA+CGG | + | chr4_4:79292692-79292711 | Msa0706320:exon | 55.0% | |
| AACCGTACGCTATTGCTGGG+TGG | - | chr4_4:79292697-79292716 | None:intergenic | 55.0% | |
| GCTACCCCCTAATATGAGCC+AGG | - | chr4_4:79293059-79293078 | Msa0706330:CDS | 55.0% | |
| TTCTCTCATCGCCAGGGATG+TGG | + | chr4_4:79293529-79293548 | Msa0706320:intron | 55.0% | |
| TCTCTCATCGCCAGGGATGT+GGG | + | chr4_4:79293530-79293549 | Msa0706320:intron | 55.0% | |
| GAAGTAAACCCCCACATCCC+TGG | - | chr4_4:79293543-79293562 | Msa0706330:intron | 55.0% | |
| GACGCTCATTCTGCTACCAC+AGG | + | chr4_4:79293875-79293894 | Msa0706320:intron | 55.0% | |
| ACGACCCAATTCCAACGCCG+TGG | + | chr4_4:79291675-79291694 | Msa0706320:CDS | 60.0% | |
| !! | GCTGGACGATGAGCATTGGC+AGG | + | chr4_4:79292539-79292558 | Msa0706320:CDS | 60.0% |
| CTCTCATCGCCAGGGATGTG+GGG | + | chr4_4:79293531-79293550 | Msa0706320:intron | 60.0% | |
| TCTCATCGCCAGGGATGTGG+GGG | + | chr4_4:79293532-79293551 | Msa0706320:intron | 60.0% | |
| CAAGGGAGCTATGGACCCTG+TGG | - | chr4_4:79293894-79293913 | None:intergenic | 60.0% | |
| ! | CCGGCCACGGCGTTGGAATT+GGG | - | chr4_4:79291682-79291701 | None:intergenic | 65.0% |
| CCCAATTCCAACGCCGTGGC+CGG | + | chr4_4:79291679-79291698 | Msa0706320:CDS | 65.0% | |
| ! | TCCGGCCACGGCGTTGGAAT+TGG | - | chr4_4:79291683-79291702 | None:intergenic | 65.0% |
| AACTGTTCCGGCCACGGCGT+TGG | - | chr4_4:79291689-79291708 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 79291596 | 79294872 | 79291596 | ID=Msa0706320;Name=Msa0706320 |
| chr4_4 | mRNA | 79291596 | 79294872 | 79291596 | ID=Msa0706320-mRNA-1;Parent=Msa0706320;Name=Msa0706320-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.66|1|0.5|0.33|3|312|178 |
| chr4_4 | exon | 79291596 | 79291938 | 79291596 | ID=Msa0706320-mRNA-1:exon:25515;Parent=Msa0706320-mRNA-1 |
| chr4_4 | exon | 79292499 | 79292728 | 79292499 | ID=Msa0706320-mRNA-1:exon:25516;Parent=Msa0706320-mRNA-1 |
| chr4_4 | exon | 79294597 | 79294872 | 79294597 | ID=Msa0706320-mRNA-1:exon:25517;Parent=Msa0706320-mRNA-1 |
| chr4_4 | CDS | 79291596 | 79291938 | 79291596 | ID=Msa0706320-mRNA-1:cds;Parent=Msa0706320-mRNA-1 |
| chr4_4 | CDS | 79292499 | 79292692 | 79292499 | ID=Msa0706320-mRNA-1:cds;Parent=Msa0706320-mRNA-1 |
| chr4_4 | three_prime_UTR | 79292693 | 79292728 | 79292693 | ID=Msa0706320-mRNA-1:three_prime_utr;Parent=Msa0706320-mRNA-1 |
| chr4_4 | three_prime_UTR | 79294597 | 79294872 | 79294597 | ID=Msa0706320-mRNA-1:three_prime_utr;Parent=Msa0706320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
