AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094560 MtrunA17_Chr4g0072291 95.753 518 12 3 1 514 1 512 0.0 1006
Msa0094560 MtrunA17_Chr2g0328971 80.465 215 41 1 148 361 156 370 3.94e-125 375
Msa0094560 MtrunA17_Chr4g0032631 77.350 234 47 3 149 376 153 386 9.14e-125 375
Msa0094560 MtrunA17_Chr7g0249621 88.325 197 19 2 149 341 249 445 6.88e-124 378
Msa0094560 MtrunA17_Chr8g0343851 64.605 291 87 4 142 427 231 510 5.42e-121 367
Msa0094560 MtrunA17_Chr1g0152161 63.296 267 86 2 91 357 256 510 9.02e-116 356
Msa0094560 MtrunA17_Chr3g0135161 57.516 306 108 5 91 395 254 538 6.01e-114 351
Msa0094560 MtrunA17_Chr4g0054351 67.490 243 75 2 143 382 294 535 1.59e-112 347
Msa0094560 MtrunA17_Chr5g0412151 84.264 197 28 1 148 341 213 409 3.00e-111 340
Msa0094560 MtrunA17_Chr5g0400871 73.892 203 50 1 155 354 245 447 1.67e-107 331
Msa0094560 MtrunA17_Chr4g0073521 72.892 166 45 0 158 323 46 211 1.02e-88 276
Msa0094560 MtrunA17_Chr7g0216601 63.298 188 66 1 139 323 45 232 3.38e-80 255
Msa0094560 MtrunA17_Chr6g0452911 52.632 247 77 5 163 399 65 281 3.08e-79 253
Msa0094560 MtrunA17_Chr8g0367311 59.048 210 76 4 196 402 22 224 1.12e-78 246
Msa0094560 MtrunA17_Chr8g0355191 68.072 166 53 0 158 323 54 219 2.83e-78 251
Msa0094560 MtrunA17_Chr4g0002011 70.414 169 47 1 158 323 35 203 8.77e-77 244
Msa0094560 MtrunA17_Chr8g0355181 66.867 166 55 0 158 323 55 220 4.62e-73 236
Msa0094560 MtrunA17_Chr8g0362541 62.245 196 60 1 142 323 52 247 1.37e-72 236
Msa0094560 MtrunA17_Chr2g0305821 67.857 112 36 0 158 269 46 157 6.52e-44 152
Msa0094560 MtrunA17_Chr7g0257361 61.538 130 42 2 157 283 55 179 4.24e-42 155
Msa0094560 MtrunA17_Chr4g0053181 49.239 197 84 5 163 356 177 360 1.60e-40 153
Msa0094560 MtrunA17_Chr7g0263581 47.396 192 92 4 134 324 110 293 3.47e-40 151
Msa0094560 MtrunA17_Chr5g0401891 53.086 162 68 3 163 324 153 306 8.25e-40 150
Msa0094560 MtrunA17_Chr4g0030191 49.091 165 70 4 163 324 132 285 3.38e-37 143
Msa0094560 MtrunA17_Chr2g0325911 45.556 180 75 4 145 324 117 273 3.42e-32 128
Msa0094560 MtrunA17_Chr2g0305831 76.271 59 14 0 265 323 1 59 6.09e-26 105
Msa0094560 MtrunA17_Chr3g0126151 45.263 95 51 1 207 301 47 140 4.02e-22 92.4
Msa0094560 MtrunA17_Chr8g0367321 78.000 50 11 0 148 197 144 193 1.18e-21 92.8
Msa0094560 MtrunA17_Chr1g0170761 36.691 139 74 4 143 278 118 245 3.30e-13 71.2
Msa0094560 MtrunA17_Chr1g0158971 53.030 66 27 2 253 318 109 170 5.53e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094560 AT5G57390.1 53.799 487 159 13 75 514 91 558 6.54e-148 436
Msa0094560 AT5G57390.2 57.243 428 138 10 118 514 27 440 2.39e-145 424
Msa0094560 AT1G51190.1 80.734 218 38 2 146 359 174 391 9.88e-125 376
Msa0094560 AT3G20840.1 81.043 211 36 2 148 354 167 377 4.84e-122 370
Msa0094560 AT5G17430.2 86.154 195 23 2 146 336 132 326 9.06e-121 365
Msa0094560 AT5G17430.1 86.154 195 23 2 146 336 194 388 4.48e-120 365
Msa0094560 AT1G72570.1 83.158 190 29 1 149 335 210 399 6.75e-116 348
Msa0094560 AT4G37750.1 64.130 276 83 6 150 412 271 543 5.33e-114 348
Msa0094560 AT5G10510.2 72.803 239 52 3 121 359 200 425 5.58e-110 338
Msa0094560 AT5G65510.4 73.568 227 46 2 121 344 143 358 1.38e-108 330
Msa0094560 AT5G65510.2 73.568 227 46 2 121 344 201 416 4.18e-108 331
Msa0094560 AT5G65510.1 73.568 227 46 2 121 344 201 416 4.18e-108 331
Msa0094560 AT5G10510.7 71.901 242 52 4 121 359 200 428 8.09e-108 332
Msa0094560 AT5G10510.5 71.901 242 52 4 121 359 200 428 8.09e-108 332
Msa0094560 AT5G10510.1 71.901 242 52 4 121 359 223 451 1.35e-107 332
Msa0094560 AT5G10510.6 71.901 242 52 4 121 359 238 466 1.79e-107 332
Msa0094560 AT5G10510.4 71.901 242 52 4 121 359 238 466 1.79e-107 332
Msa0094560 AT5G10510.3 70.417 240 46 3 143 359 249 486 4.81e-103 322
Msa0094560 AT5G65510.3 74.857 175 30 2 121 292 143 306 8.41e-91 280
Msa0094560 AT3G54320.3 67.456 169 52 1 158 323 61 229 2.35e-70 231
Msa0094560 AT3G54320.1 67.456 169 52 1 158 323 61 229 2.69e-70 231
Msa0094560 AT1G16060.1 69.231 169 49 1 158 323 54 222 2.39e-65 216
Msa0094560 AT1G79700.2 68.639 169 50 1 158 323 48 216 5.69e-65 213
Msa0094560 AT1G79700.1 64.497 169 47 2 158 323 48 206 5.64e-57 192
Msa0094560 AT3G54320.4 68.750 128 40 0 196 323 36 163 1.72e-51 179
Msa0094560 AT3G54320.5 68.750 128 40 0 196 323 36 163 1.72e-51 179
Msa0094560 AT1G79700.3 69.531 128 39 0 196 323 13 140 9.47e-46 160
Msa0094560 AT1G79700.4 69.531 128 39 0 196 323 7 134 9.81e-46 160
Msa0094560 AT1G16060.3 68.657 134 42 0 190 323 19 152 2.29e-45 160
Msa0094560 AT2G41710.1 59.848 132 45 2 155 283 63 189 1.88e-41 154
Msa0094560 AT2G41710.4 59.848 132 45 2 155 283 63 189 3.77e-41 154
Msa0094560 AT4G36920.1 50.259 193 81 5 143 332 113 293 7.11e-41 152
Msa0094560 AT4G36920.2 50.259 193 81 5 143 332 113 293 7.11e-41 152
Msa0094560 AT2G41710.2 57.664 137 45 3 155 283 63 194 4.87e-39 147
Msa0094560 AT2G28550.3 49.143 175 73 5 163 332 154 317 5.15e-38 145
Msa0094560 AT5G67180.2 46.842 190 90 4 135 324 72 250 8.03e-38 141
Msa0094560 AT5G67180.3 46.842 190 90 4 135 324 72 250 1.37e-37 140
Msa0094560 AT5G67180.1 47.150 193 85 5 135 324 72 250 3.83e-37 140
Msa0094560 AT2G41710.3 47.305 167 45 3 155 283 63 224 9.47e-35 136
Msa0094560 AT1G16060.2 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa0094560 AT1G16060.4 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa0094560 AT1G16060.6 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa0094560 AT1G16060.5 72.727 88 24 0 236 323 1 88 5.62e-33 125
Msa0094560 AT3G54320.2 71.591 88 25 0 236 323 1 88 5.21e-32 125
Msa0094560 AT2G28550.4 48.571 140 58 4 163 299 154 282 5.18e-30 120
Msa0094560 AT2G28550.1 45.143 175 65 6 163 332 154 302 1.15e-29 121
Msa0094560 AT5G67180.4 44.118 170 84 4 135 304 72 230 2.02e-28 114
Msa0094560 AT2G28550.2 48.413 126 51 4 163 285 154 268 3.68e-25 105
Msa0094560 AT2G28550.6 48.413 126 51 4 163 285 154 268 3.68e-25 105
Msa0094560 AT2G28550.5 35.242 227 108 5 196 407 14 216 1.69e-22 97.8
Msa0094560 AT2G39250.2 42.857 112 51 3 163 271 109 210 1.69e-22 96.7
Msa0094560 AT2G39250.1 42.857 112 51 3 163 271 109 210 4.21e-22 97.8
Msa0094560 AT2G39250.1 40.196 102 55 3 235 332 80 179 9.69e-11 63.5
Msa0094560 AT5G60120.2 29.863 365 185 17 138 480 140 455 2.23e-19 91.7
Msa0094560 AT5G60120.1 37.363 182 81 7 138 316 140 291 6.19e-19 90.1
Msa0094560 AT1G16060.7 79.310 58 12 0 266 323 9 66 6.51e-19 85.1
Msa0094560 AT5G60120.6 37.363 182 81 7 138 316 140 291 6.92e-19 89.7
Msa0094560 AT5G60120.4 42.105 152 66 6 138 284 140 274 7.79e-19 89.0
Msa0094560 AT5G60120.3 42.105 152 66 6 138 284 140 274 7.79e-19 89.0
Msa0094560 AT5G60120.5 42.105 152 66 6 138 284 140 274 7.79e-19 89.0
Msa0094560 AT3G54990.2 47.170 106 43 3 163 265 123 218 2.27e-17 82.4
Msa0094560 AT3G54990.1 47.170 106 43 3 163 265 123 218 6.73e-17 82.4
Msa0094560 AT1G36060.1 38.318 107 60 2 252 358 133 233 3.80e-11 64.7
Msa0094560 AT1G03800.1 35.338 133 75 3 231 363 22 143 4.16e-11 63.9
Msa0094560 AT5G65130.1 32.571 175 94 6 250 405 99 268 5.20e-11 63.9
Msa0094560 AT5G65130.2 32.571 175 94 6 250 405 101 270 5.72e-11 63.9
Msa0094560 AT2G20880.1 44.578 83 45 1 236 318 161 242 7.46e-11 63.9

Find 157 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTTCAAACGCCAATATT+TGG 0.167429 1_2:-77799375 Msa0094560:CDS
TTGAATTGGTTCGTTGATTT+TGG 0.203511 1_2:+77799830 None:intergenic
AGGATTAGGAAAGTTATTAT+TGG 0.265279 1_2:+77802734 None:intergenic
AAGACCCTTCTACCGATTAT+TGG 0.267990 1_2:-77799737 Msa0094560:CDS
TGAAGCTTAGTTGGTTTCTT+TGG 0.274376 1_2:+77802873 None:intergenic
CAGCACTGCTAGGGTTATTA+TGG 0.274613 1_2:+77799697 None:intergenic
GTAGAAGGGTCTTGTTTAAT+AGG 0.278427 1_2:+77799747 None:intergenic
GCTCATTCCATTCCAAATAT+TGG 0.285129 1_2:+77799363 None:intergenic
TTACTATTTAAAGAAAATAT+TGG 0.298151 1_2:+77799483 None:intergenic
ATCTTGCTGCTCTCAAGTAC+TGG 0.314872 1_2:-77801043 Msa0094560:CDS
CTTATTTGATAAACCTCCTA+TGG 0.315963 1_2:+77799887 None:intergenic
AAGGTAGAGGTCTTTGTTTC+CGG 0.318164 1_2:+77800441 None:intergenic
GGAGATATGAAGCACATCTA+TGG 0.326305 1_2:-77801950 Msa0094560:CDS
CTTGTGGCTGCCGGTGAATA+TGG 0.331498 1_2:+77802440 None:intergenic
AACGACCACTACCAACTTTC+CGG 0.338959 1_2:-77801015 Msa0094560:intron
CACAAGTTCGAGGACTTCTT+AGG 0.357176 1_2:-77802423 Msa0094560:CDS
ATTGCAGCAATCAAATTTAG+AGG 0.358044 1_2:-77799978 Msa0094560:CDS
GAGGTGTTGTTAGTGTTTGT+AGG 0.362481 1_2:+77802774 None:intergenic
GAAGATGAGTGGGAAGGATT+AGG 0.362867 1_2:+77802720 None:intergenic
GACATGATTTATGAGTATAA+TGG 0.370754 1_2:-77799019 Msa0094560:three_prime_UTR
TTGGACCAATAATCGGTAGA+AGG 0.379956 1_2:+77799732 None:intergenic
TATGAGAATGGTACTAGTTA+TGG 0.381199 1_2:-77799450 Msa0094560:CDS
GGTATTATAGAGGAAGGATA+AGG 0.383296 1_2:+77802666 None:intergenic
ATTATGGAAGCCGAGAATAT+TGG 0.385997 1_2:+77799713 None:intergenic
ACATGATTTATGAGTATAAT+GGG 0.387504 1_2:-77799018 Msa0094560:three_prime_UTR
CCTGGTGACACCGCGATAGA+TGG 0.390623 1_2:+77802194 None:intergenic
CGATGGCGTTGAAGCTTAGT+TGG 0.395432 1_2:+77802864 None:intergenic
GACTTGGCTTTGCATGTGTT+TGG 0.396154 1_2:+77799397 None:intergenic
GGAATGAGCTCATGCATATC+AGG 0.398293 1_2:-77799349 Msa0094560:exon
AGGTGTTGTTAGTGTTTGTA+GGG 0.402140 1_2:+77802775 None:intergenic
TCTATTTCGTCAGATTGAAT+TGG 0.402860 1_2:+77799816 None:intergenic
ATCAATCTCCTTCTCATAGT+TGG 0.408692 1_2:+77800865 None:intergenic
GTATTATAGAGGAAGGATAA+GGG 0.409045 1_2:+77802667 None:intergenic
AATGGTACTAGTTATGGAAA+TGG 0.413030 1_2:-77799444 Msa0094560:CDS
ATGGTACCAACACAATGAAA+TGG 0.414251 1_2:+77798976 None:intergenic
GATTATTGGTCCAATATTCT+CGG 0.416679 1_2:-77799723 Msa0094560:CDS
GTTATGGAAATGGAAATAAC+TGG 0.419371 1_2:-77799434 Msa0094560:CDS
ACAATAGCTGCTTGCTTCCC+TGG 0.422931 1_2:-77802297 Msa0094560:CDS
TGTAATCCATTTCATTGTGT+TGG 0.424726 1_2:-77798982 Msa0094560:three_prime_UTR
TTGCCTGCCATCGGCCATGC+TGG 0.430696 1_2:+77800479 None:intergenic
GGTTCGGTGGGGTAGCCACC+AGG 0.431604 1_2:+77802279 None:intergenic
GAGAATATTGGACCAATAAT+CGG 0.435797 1_2:+77799725 None:intergenic
TTATCACTGTTGGTATTTGA+AGG 0.440953 1_2:+77799633 None:intergenic
TGACGACGAAGATGAAGAAT+TGG 0.441913 1_2:+77799536 None:intergenic
GTTGCGGCGGCTGTTCTTGT+TGG 0.443667 1_2:+77802387 None:intergenic
AGGTTCGGAGTTTGGTTCGG+TGG 0.444923 1_2:+77802266 None:intergenic
GAGAGATGGTGGTATTATAG+AGG 0.451776 1_2:+77802656 None:intergenic
GCAAGAATAGGCAGAGTTGC+CGG 0.451955 1_2:-77800460 Msa0094560:CDS
TAATTTAGGTGGCTATGATA+AGG 0.452771 1_2:-77801090 Msa0094560:intron
GGTTCGGAGTTTGGTTCGGT+GGG 0.458866 1_2:+77802267 None:intergenic
TTGAGGTTCGGAGTTTGGTT+CGG 0.459991 1_2:+77802263 None:intergenic
TCTTGCTGCTCTCAAGTACT+GGG 0.460585 1_2:-77801042 Msa0094560:CDS
GGCTGTTCTTGTTGGTGCAA+CGG 0.461915 1_2:+77802395 None:intergenic
AAGGATAAGGGGTGAAGGAG+TGG 0.462972 1_2:+77802679 None:intergenic
GGAAATGGAAATAACTGGAT+TGG 0.463612 1_2:-77799429 Msa0094560:CDS
GATGGTGGTATTATAGAGGA+AGG 0.464335 1_2:+77802660 None:intergenic
GAAAATATTGGTGTTGCGAA+TGG 0.474020 1_2:+77799495 None:intergenic
CCATCTATCGCGGTGTCACC+AGG 0.475525 1_2:-77802194 Msa0094560:intron
GTTCCTCCATCTGTTGCCTC+TGG 0.480278 1_2:+77802474 None:intergenic
AGGGTCTTGTTTAATAGGTA+AGG 0.484892 1_2:+77799752 None:intergenic
GATGATGATGAAAGTGTTGA+AGG 0.487520 1_2:-77799273 Msa0094560:three_prime_UTR
GAGGTGAGAGGAAGATGAGT+GGG 0.487978 1_2:+77802710 None:intergenic
AGAGGAAGGATAAGGGGTGA+AGG 0.490294 1_2:+77802674 None:intergenic
ACAATGAAATGGATTACAAA+AGG 0.493633 1_2:+77798987 None:intergenic
GTCCTCGAACTTGTGGCTGC+CGG 0.496373 1_2:+77802431 None:intergenic
TCAAACGCCAATATTTGGAA+TGG 0.498126 1_2:-77799370 Msa0094560:CDS
AATAGTAGTAGTTATGAGAA+TGG 0.502038 1_2:-77799462 Msa0094560:CDS
TATTGGAAAGAGAGAAAGCG+AGG 0.505616 1_2:+77802751 None:intergenic
GGTGAATATGGAGAGGTTTG+TGG 0.510555 1_2:+77802452 None:intergenic
GGCCGATGGCAGGCAAGAAT+AGG 0.512416 1_2:-77800472 Msa0094560:CDS
GTGGTAGTAACAGCACTGCT+AGG 0.512894 1_2:+77799687 None:intergenic
GGAAAGAGAGAAAGCGAGGG+AGG 0.518672 1_2:+77802755 None:intergenic
TGAAGGAGTGGAAAAGAGAG+AGG 0.524119 1_2:+77802691 None:intergenic
TGCCTCTGGTGAAGCTTCCA+CGG 0.528484 1_2:+77802488 None:intergenic
AATAGTTCTCTTCCCATAGG+AGG 0.530212 1_2:-77799900 Msa0094560:CDS
GAAAACTGCTGAAGCTGTGT+GGG 0.532869 1_2:+77802357 None:intergenic
CCACCAGCATGGCCGATGGC+AGG 0.533190 1_2:-77800482 Msa0094560:CDS
TACTGAAAGTGCCAAGGTAG+AGG 0.534747 1_2:+77800428 None:intergenic
CTAAGAAGTCCTCGAACTTG+TGG 0.537216 1_2:+77802424 None:intergenic
CCTGCCATCGGCCATGCTGG+TGG 0.544113 1_2:+77800482 None:intergenic
TGCCTATTCTTGCCTGCCAT+CGG 0.545171 1_2:+77800470 None:intergenic
TGAAAGTGTTGAAGGAAGGA+AGG 0.546554 1_2:-77799265 Msa0094560:three_prime_UTR
GGAATTATATATATCATTGT+CGG 0.547335 1_2:+77802332 None:intergenic
GTGGAAAAGAGAGAGGTGAG+AGG 0.548112 1_2:+77802698 None:intergenic
ATTGGAAAGAGAGAAAGCGA+GGG 0.549140 1_2:+77802752 None:intergenic
AGAGGTGAGAGGAAGATGAG+TGG 0.549550 1_2:+77802709 None:intergenic
GCAAATAGTTCTCTTCCCAT+AGG 0.555242 1_2:-77799903 Msa0094560:CDS
CCACCATCTCTCACCCTCAC+AGG 0.557858 1_2:-77802645 Msa0094560:intron
TGAGAGGAAGATGAGTGGGA+AGG 0.558701 1_2:+77802714 None:intergenic
GAGATATGAAGCACATCTAT+GGG 0.559005 1_2:-77801949 Msa0094560:CDS
CAAAATATGAACGGAAGCAG+TGG 0.559047 1_2:-77799561 Msa0094560:CDS
AGGGAAGGACAAAGTAGGAA+AGG 0.559779 1_2:-77801912 Msa0094560:CDS
GTACAAACTTACCGGAAAGT+TGG 0.561227 1_2:+77801004 None:intergenic
CAATTTACAGAGGGGTAACA+AGG 0.562932 1_2:-77800651 Msa0094560:intron
TTATTTGATAAACCTCCTAT+GGG 0.563688 1_2:+77799888 None:intergenic
GTTGCCGACGAAGTTGAAGA+TGG 0.564476 1_2:+77799789 None:intergenic
TGGTAGTAACAGCACTGCTA+GGG 0.567073 1_2:+77799688 None:intergenic
CACCGGCAGCCACAAGTTCG+AGG 0.568522 1_2:-77802433 Msa0094560:CDS
GGAAAGTTGGTAGTGGTCGT+TGG 0.570366 1_2:+77801017 None:intergenic
GGAAACAAAGACCTCTACCT+TGG 0.572572 1_2:-77800439 Msa0094560:CDS
GTGTTGTTAGTGTTTGTAGG+GGG 0.575757 1_2:+77802777 None:intergenic
AAGAGTAGTGGTTTCTCAAG+AGG 0.576512 1_2:-77800679 Msa0094560:CDS
GATGGAGGTGCGTTGTCCGA+AGG 0.579181 1_2:+77802212 None:intergenic
GCTTCACCAGAGGCAACAGA+TGG 0.579683 1_2:-77802480 Msa0094560:CDS
TACTACCACACCATTCAACA+TGG 0.582642 1_2:-77799673 Msa0094560:CDS
TTTCAGCAACAAAATATGAA+CGG 0.583240 1_2:-77799570 Msa0094560:CDS
TCAGATTTCCAACTATGAGA+AGG 0.583626 1_2:-77800873 Msa0094560:intron
TATGGGACAATAGTTGCAGA+AGG 0.584131 1_2:-77801932 Msa0094560:CDS
GACACCACCAGCATGGCCGA+TGG 0.584738 1_2:-77800486 Msa0094560:CDS
GACAATAGTTGCAGAAGGGA+AGG 0.585408 1_2:-77801927 Msa0094560:CDS
TATTATAGAGGAAGGATAAG+GGG 0.586147 1_2:+77802668 None:intergenic
TCATGCATATCAGGTGCTGA+TGG 0.589848 1_2:-77799340 Msa0094560:three_prime_UTR
GGAGAGAGAAAGACCTGTGA+GGG 0.590470 1_2:+77802632 None:intergenic
TGGACCAATAATCGGTAGAA+GGG 0.591088 1_2:+77799733 None:intergenic
TCATCCATCTTCAACTTCGT+CGG 0.591398 1_2:-77799793 Msa0094560:CDS
ATATGAACGTGAAATATCGA+TGG 0.594272 1_2:+77802847 None:intergenic
CAAAGTAGGAAAGGAAGACA+AGG 0.595973 1_2:-77801903 Msa0094560:intron
GAAGGACAGTGTTGTAGTGA+TGG 0.596070 1_2:-77799247 Msa0094560:three_prime_UTR
GCAGAAGGGAAGGACAAAGT+AGG 0.597553 1_2:-77801917 Msa0094560:CDS
GGTGTTGTTAGTGTTTGTAG+GGG 0.599101 1_2:+77802776 None:intergenic
GTTCGGAGTTTGGTTCGGTG+GGG 0.599227 1_2:+77802268 None:intergenic
GGTTTCTGATGCAGAATCTG+TGG 0.599958 1_2:+77799851 None:intergenic
TCATGTTATAGGAAGAGTAG+TGG 0.600719 1_2:-77800691 Msa0094560:intron
ATTGGCGTTTGAAACAGACT+TGG 0.602086 1_2:+77799381 None:intergenic
GTTCGGTGGGGTAGCCACCA+GGG 0.604192 1_2:+77802280 None:intergenic
ATTATATATATCATTGTCGG+TGG 0.604777 1_2:+77802335 None:intergenic
CTGTGTGGGTGCACACGTTG+CGG 0.605215 1_2:+77802371 None:intergenic
GAGGAGCATCAATTTACAGA+GGG 0.606917 1_2:-77800660 Msa0094560:CDS
ATTGTGGGGATTATCACTGT+TGG 0.607060 1_2:+77799623 None:intergenic
AATTTGTTGCTTCTCTACGA+AGG 0.609124 1_2:-77800817 Msa0094560:intron
ACAAACCTCTCCATATTCAC+CGG 0.611418 1_2:-77802450 Msa0094560:CDS
ATGATGAAAGTGTTGAAGGA+AGG 0.612896 1_2:-77799269 Msa0094560:three_prime_UTR
TCACCAGAGGCAACAGATGG+AGG 0.617655 1_2:-77802477 Msa0094560:CDS
TGCAAAGCAATAGAATCAGA+AGG 0.621670 1_2:-77799207 Msa0094560:three_prime_UTR
AATAGAATCAGAAGGAAACA+AGG 0.627213 1_2:-77799199 Msa0094560:three_prime_UTR
TCCAGGAAGCAGCAACGCCG+TGG 0.632938 1_2:-77802505 Msa0094560:intron
CGCCGTGGAAGCTTCACCAG+AGG 0.633581 1_2:-77802490 Msa0094560:CDS
CCTGTGAGGGTGAGAGATGG+TGG 0.636945 1_2:+77802645 None:intergenic
GGAAAACTGCTGAAGCTGTG+TGG 0.638121 1_2:+77802356 None:intergenic
TGTGGGTGCACACGTTGCGG+CGG 0.646698 1_2:+77802374 None:intergenic
TGGTGCAGACACCACCAGCA+TGG 0.647953 1_2:-77800493 Msa0094560:intron
AAAATCCATGTTGAATGGTG+TGG 0.648019 1_2:+77799668 None:intergenic
ACTTACCGGAAAGTTGGTAG+TGG 0.649056 1_2:+77801010 None:intergenic
ATGGGACAATAGTTGCAGAA+GGG 0.651127 1_2:-77801931 Msa0094560:CDS
GCGTTGTCCGAAGGTATCAA+CGG 0.652510 1_2:+77802221 None:intergenic
AGTACATACTGAAAGTGCCA+AGG 0.656101 1_2:+77800422 None:intergenic
GGTGACACCGCGATAGATGG+AGG 0.661765 1_2:+77802197 None:intergenic
AGACCTGTGAGGGTGAGAGA+TGG 0.662144 1_2:+77802642 None:intergenic
TGAATAATAGTACACAACAA+TGG 0.675034 1_2:+77798957 None:intergenic
ATAGCTGCTTGCTTCCCTGG+TGG 0.677407 1_2:-77802294 Msa0094560:CDS
CTTGCTGCTCTCAAGTACTG+GGG 0.677546 1_2:-77801041 Msa0094560:CDS
GGCTGCCGGTGAATATGGAG+AGG 0.695158 1_2:+77802445 None:intergenic
CAACGCACCTCCATCTATCG+CGG 0.695636 1_2:-77802204 Msa0094560:CDS
AGAGGAGCATCAATTTACAG+AGG 0.704191 1_2:-77800661 Msa0094560:CDS
GGGAGAGAGAAAGACCTGTG+AGG 0.704212 1_2:+77802631 None:intergenic
AAATTGAAGACTTAAAACAA+AGG 0.710279 1_2:+77799100 None:intergenic
AGGAGCATCAATTTACAGAG+GGG 0.728920 1_2:-77800659 Msa0094560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAAATTTTTAAAAAAA+TGG + chr1_2:77801608-77801627 None:intergenic 0.0%
!!! TTTGTTTTTTGTTATAATTT+AGG - chr1_2:77800697-77800716 Msa0094560:intron 10.0%
!!! AAATTATATGAATAGTTTTA+TGG - chr1_2:77801071-77801090 Msa0094560:CDS 10.0%
!! TTATTTATAGTATACTATAA+AGG - chr1_2:77801507-77801526 Msa0094560:intron 10.0%
!! TATTTATAGTATACTATAAA+GGG - chr1_2:77801508-77801527 Msa0094560:intron 10.0%
!! TATATTATTATTATGTCATT+AGG + chr1_2:77801665-77801684 None:intergenic 10.0%
!! TAAATTGAAAAAAAATGATT+AGG + chr1_2:77801757-77801776 None:intergenic 10.0%
!! TTACTATTTAAAGAAAATAT+TGG + chr1_2:77802321-77802340 None:intergenic 10.0%
!! TGAAAGATTATTTATATGTA+GGG - chr1_2:77799941-77799960 Msa0094560:CDS 15.0%
!! TAGTAGTATAAATTTGAATA+AGG - chr1_2:77800021-77800040 Msa0094560:intron 15.0%
!! TTATTATGATCAAAATAGAT+CGG - chr1_2:77800376-77800395 Msa0094560:intron 15.0%
!! CATTATACAGTAAAATAAAA+GGG + chr1_2:77800841-77800860 None:intergenic 15.0%
!!! AATGTTTTACATTTTTTTGT+TGG - chr1_2:77800896-77800915 Msa0094560:intron 15.0%
!! AAACAGTTTAATAAAAAAAC+TGG + chr1_2:77801555-77801574 None:intergenic 15.0%
!! AAAATTGAAAAACACAAAAA+AGG + chr1_2:77802729-77802748 None:intergenic 15.0%
!!! TTTTTGTGTTTTTCAATTTT+TGG - chr1_2:77802729-77802748 Msa0094560:CDS 15.0%
!!! CTTTTTTTTTTTTCATTTCC+AGG - chr1_2:77799279-77799298 Msa0094560:three_prime_UTR 20.0%
!! GGAATTATATATATCATTGT+CGG + chr1_2:77799472-77799491 None:intergenic 20.0%
!! GTGAAAGATTATTTATATGT+AGG - chr1_2:77799940-77799959 Msa0094560:CDS 20.0%
!! TATTATGATCAAAATAGATC+GGG - chr1_2:77800377-77800396 Msa0094560:intron 20.0%
!!! TAATCATTTAGCTCATAAAA+TGG - chr1_2:77800670-77800689 Msa0094560:CDS 20.0%
!!! GTTTTTTGTTATAATTTAGG+TGG - chr1_2:77800700-77800719 Msa0094560:intron 20.0%
!! GCATTATACAGTAAAATAAA+AGG + chr1_2:77800842-77800861 None:intergenic 20.0%
!!! TTTATTTTCCTTCATGTTAT+AGG - chr1_2:77801099-77801118 Msa0094560:intron 20.0%
!! CACAAAAAATTAAAACTCAA+AGG + chr1_2:77801184-77801203 None:intergenic 20.0%
!!! CTTTGAGTTTTAATTTTTTG+TGG - chr1_2:77801182-77801201 Msa0094560:intron 20.0%
!!! TGATAAATTCATATTCGTTT+TGG - chr1_2:77801207-77801226 Msa0094560:intron 20.0%
!!! TTGAAACAACTTTAATTTGT+TGG - chr1_2:77801288-77801307 Msa0094560:intron 20.0%
!! TAAAAAAATATTAGATGGGT+CGG + chr1_2:77801490-77801509 None:intergenic 20.0%
!! AATAAAAAAACTGGCAAAAA+TGG + chr1_2:77801546-77801565 None:intergenic 20.0%
!! AAATTGAAGACTTAAAACAA+AGG + chr1_2:77802704-77802723 None:intergenic 20.0%
!! ACATGATTTATGAGTATAAT+GGG - chr1_2:77802783-77802802 Msa0094560:CDS 20.0%
!!! CCATAGTTTGATTTTGTTTT+TGG + chr1_2:77798987-77799006 None:intergenic 25.0%
! CCAAAAACAAAATCAAACTA+TGG - chr1_2:77798984-77799003 Msa0094560:three_prime_UTR 25.0%
! AGGATTAGGAAAGTTATTAT+TGG + chr1_2:77799070-77799089 None:intergenic 25.0%
! ATTATATATATCATTGTCGG+TGG + chr1_2:77799469-77799488 None:intergenic 25.0%
! AAAAAGCTAGCCAAAATATA+TGG - chr1_2:77799694-77799713 Msa0094560:CDS 25.0%
!! TTGTCTATGTCCATATATTT+TGG + chr1_2:77799707-77799726 None:intergenic 25.0%
!! TGATAATTTTCAGACATAGA+TGG - chr1_2:77799824-77799843 Msa0094560:CDS 25.0%
! ATTATTTATATGTAGGGACT+AGG - chr1_2:77799947-77799966 Msa0094560:CDS 25.0%
! TTATTTATATGTAGGGACTA+GGG - chr1_2:77799948-77799967 Msa0094560:CDS 25.0%
!! ATCTTTTGCTTCAGTTTATT+TGG - chr1_2:77800483-77800502 Msa0094560:CDS 25.0%
!! TCTTTTGCTTCAGTTTATTT+GGG - chr1_2:77800484-77800503 Msa0094560:CDS 25.0%
!!! ACCAAATCATCATTTTGTTT+TGG - chr1_2:77800563-77800582 Msa0094560:intron 25.0%
! GATTATTTGTACAAACTTAC+CGG + chr1_2:77800808-77800827 None:intergenic 25.0%
! ACATTTATGAAAACCGTTAA+AGG + chr1_2:77800881-77800900 None:intergenic 25.0%
! AATCTAATGATATACACTAG+GGG + chr1_2:77801233-77801252 None:intergenic 25.0%
! GAATCTAATGATATACACTA+GGG + chr1_2:77801234-77801253 None:intergenic 25.0%
! AGAATCTAATGATATACACT+AGG + chr1_2:77801235-77801254 None:intergenic 25.0%
! TGATGTCAATATATGGATAA+TGG + chr1_2:77801408-77801427 None:intergenic 25.0%
! TGTATAGTGATGTCAATATA+TGG + chr1_2:77801415-77801434 None:intergenic 25.0%
! TTATTTGATAAACCTCCTAT+GGG + chr1_2:77801916-77801935 None:intergenic 25.0%
! TTTCAGCAACAAAATATGAA+CGG - chr1_2:77802231-77802250 Msa0094560:CDS 25.0%
! AATAGTAGTAGTTATGAGAA+TGG - chr1_2:77802339-77802358 Msa0094560:CDS 25.0%
! GACATGATTTATGAGTATAA+TGG - chr1_2:77802782-77802801 Msa0094560:CDS 25.0%
!!! ACAATGAAATGGATTACAAA+AGG + chr1_2:77802817-77802836 None:intergenic 25.0%
! TGAATAATAGTACACAACAA+TGG + chr1_2:77802847-77802866 None:intergenic 25.0%
ATATGAACGTGAAATATCGA+TGG + chr1_2:77798957-77798976 None:intergenic 30.0%
TATTATAGAGGAAGGATAAG+GGG + chr1_2:77799136-77799155 None:intergenic 30.0%
GTATTATAGAGGAAGGATAA+GGG + chr1_2:77799137-77799156 None:intergenic 30.0%
TTAGAGAGAAACTGAGATAT+TGG + chr1_2:77799237-77799256 None:intergenic 30.0%
!!! AAGGTATCAACGGTTTTTTT+AGG + chr1_2:77799573-77799592 None:intergenic 30.0%
AAAAAAACCGTTGATACCTT+CGG - chr1_2:77799573-77799592 Msa0094560:CDS 30.0%
! AATTTTCAGACATAGATGGA+CGG - chr1_2:77799828-77799847 Msa0094560:CDS 30.0%
TCTTTAACTCCCATTTATTC+CGG + chr1_2:77800145-77800164 None:intergenic 30.0%
TTCAAAACCATTCTCAATCA+AGG - chr1_2:77800197-77800216 Msa0094560:intron 30.0%
CAGGTACAAAAGCAAAAAAA+AGG + chr1_2:77800435-77800454 None:intergenic 30.0%
!!! CTTTTTTTTGCTTTTGTACC+TGG - chr1_2:77800433-77800452 Msa0094560:CDS 30.0%
GCCAAAACAAAATGATGATT+TGG + chr1_2:77800567-77800586 None:intergenic 30.0%
CATTAAAATGTACATGAAGC+AGG + chr1_2:77800597-77800616 None:intergenic 30.0%
TAATTTAGGTGGCTATGATA+AGG - chr1_2:77800711-77800730 Msa0094560:intron 30.0%
ATTGCAGCAATCAAATTTAG+AGG - chr1_2:77801823-77801842 Msa0094560:intron 30.0%
CTTATTTGATAAACCTCCTA+TGG + chr1_2:77801917-77801936 None:intergenic 30.0%
!!! TTGAATTGGTTCGTTGATTT+TGG + chr1_2:77801974-77801993 None:intergenic 30.0%
TCTATTTCGTCAGATTGAAT+TGG + chr1_2:77801988-77802007 None:intergenic 30.0%
GAGAATATTGGACCAATAAT+CGG + chr1_2:77802079-77802098 None:intergenic 30.0%
GATTATTGGTCCAATATTCT+CGG - chr1_2:77802078-77802097 Msa0094560:intron 30.0%
TTATCACTGTTGGTATTTGA+AGG + chr1_2:77802171-77802190 None:intergenic 30.0%
TATGAGAATGGTACTAGTTA+TGG - chr1_2:77802351-77802370 Msa0094560:CDS 30.0%
AATGGTACTAGTTATGGAAA+TGG - chr1_2:77802357-77802376 Msa0094560:CDS 30.0%
GTTATGGAAATGGAAATAAC+TGG - chr1_2:77802367-77802386 Msa0094560:CDS 30.0%
AATAGAATCAGAAGGAAACA+AGG - chr1_2:77802602-77802621 Msa0094560:intron 30.0%
TGTAATCCATTTCATTGTGT+TGG - chr1_2:77802819-77802838 Msa0094560:exon 30.0%
! TGAAGCTTAGTTGGTTTCTT+TGG + chr1_2:77798931-77798950 None:intergenic 35.0%
!! AGGTGTTGTTAGTGTTTGTA+GGG + chr1_2:77799029-77799048 None:intergenic 35.0%
GGTATTATAGAGGAAGGATA+AGG + chr1_2:77799138-77799157 None:intergenic 35.0%
! AGCTATTGTTTTCTTCAGCT+CGG + chr1_2:77799493-77799512 None:intergenic 35.0%
!! TTTTTAGGAGAAGGCTTTTG+AGG + chr1_2:77799558-77799577 None:intergenic 35.0%
!!! TCAACGGTTTTTTTAGGAGA+AGG + chr1_2:77799567-77799586 None:intergenic 35.0%
AAACATGCACTAAACATACC+TGG + chr1_2:77799628-77799647 None:intergenic 35.0%
! ATTTTCAGACATAGATGGAC+GGG - chr1_2:77799829-77799848 Msa0094560:CDS 35.0%
GAGATATGAAGCACATCTAT+GGG - chr1_2:77799852-77799871 Msa0094560:CDS 35.0%
TCTGAATCCTTGATTGAGAA+TGG + chr1_2:77800207-77800226 None:intergenic 35.0%
! TGAACTTTGAAGATTCTGAC+CGG - chr1_2:77800408-77800427 Msa0094560:intron 35.0%
ACAAAAGCAAAAAAAAGGCC+CGG + chr1_2:77800430-77800449 None:intergenic 35.0%
AACTATTCACGCTCCTTTAA+CGG - chr1_2:77800865-77800884 Msa0094560:CDS 35.0%
TCAGATTTCCAACTATGAGA+AGG - chr1_2:77800928-77800947 Msa0094560:intron 35.0%
ATCAATCTCCTTCTCATAGT+TGG + chr1_2:77800939-77800958 None:intergenic 35.0%
!! AATTTGTTGCTTCTCTACGA+AGG - chr1_2:77800984-77801003 Msa0094560:intron 35.0%
CTACTCTTCCTATAACATGA+AGG + chr1_2:77801110-77801129 None:intergenic 35.0%
TCATGTTATAGGAAGAGTAG+TGG - chr1_2:77801110-77801129 Msa0094560:intron 35.0%
GTCTGCATGCTAGTAATTTA+TGG - chr1_2:77801702-77801721 Msa0094560:intron 35.0%
!! AGGGTCTTGTTTAATAGGTA+AGG + chr1_2:77802052-77802071 None:intergenic 35.0%
!! GTAGAAGGGTCTTGTTTAAT+AGG + chr1_2:77802057-77802076 None:intergenic 35.0%
ATTATGGAAGCCGAGAATAT+TGG + chr1_2:77802091-77802110 None:intergenic 35.0%
AAAATCCATGTTGAATGGTG+TGG + chr1_2:77802136-77802155 None:intergenic 35.0%
GCAGAAAAATCCATGTTGAA+TGG + chr1_2:77802141-77802160 None:intergenic 35.0%
ACTGAAAAATGCTGCATTGT+GGG + chr1_2:77802196-77802215 None:intergenic 35.0%
!! GAAAATATTGGTGTTGCGAA+TGG + chr1_2:77802309-77802328 None:intergenic 35.0%
GGAAATGGAAATAACTGGAT+TGG - chr1_2:77802372-77802391 Msa0094560:CDS 35.0%
CTGTTTCAAACGCCAATATT+TGG - chr1_2:77802426-77802445 Msa0094560:CDS 35.0%
TCAAACGCCAATATTTGGAA+TGG - chr1_2:77802431-77802450 Msa0094560:CDS 35.0%
GCTCATTCCATTCCAAATAT+TGG + chr1_2:77802441-77802460 None:intergenic 35.0%
!! GATGATGATGAAAGTGTTGA+AGG - chr1_2:77802528-77802547 Msa0094560:intron 35.0%
!! ATGATGAAAGTGTTGAAGGA+AGG - chr1_2:77802532-77802551 Msa0094560:intron 35.0%
TGCAAAGCAATAGAATCAGA+AGG - chr1_2:77802594-77802613 Msa0094560:intron 35.0%
ATGGTACCAACACAATGAAA+TGG + chr1_2:77802828-77802847 None:intergenic 35.0%
! GTGTTGTTAGTGTTTGTAGG+GGG + chr1_2:77799027-77799046 None:intergenic 40.0%
!! GGTGTTGTTAGTGTTTGTAG+GGG + chr1_2:77799028-77799047 None:intergenic 40.0%
!! GAGGTGTTGTTAGTGTTTGT+AGG + chr1_2:77799030-77799049 None:intergenic 40.0%
ATTGGAAAGAGAGAAAGCGA+GGG + chr1_2:77799052-77799071 None:intergenic 40.0%
TATTGGAAAGAGAGAAAGCG+AGG + chr1_2:77799053-77799072 None:intergenic 40.0%
! GATGGTGGTATTATAGAGGA+AGG + chr1_2:77799144-77799163 None:intergenic 40.0%
! GAGAGATGGTGGTATTATAG+AGG + chr1_2:77799148-77799167 None:intergenic 40.0%
ACAAACCTCTCCATATTCAC+CGG - chr1_2:77799351-77799370 Msa0094560:exon 40.0%
! TTTTCAGACATAGATGGACG+GGG - chr1_2:77799830-77799849 Msa0094560:CDS 40.0%
GGAGATATGAAGCACATCTA+TGG - chr1_2:77799851-77799870 Msa0094560:CDS 40.0%
TATGGGACAATAGTTGCAGA+AGG - chr1_2:77799869-77799888 Msa0094560:CDS 40.0%
ATGGGACAATAGTTGCAGAA+GGG - chr1_2:77799870-77799889 Msa0094560:CDS 40.0%
CAAAGTAGGAAAGGAAGACA+AGG - chr1_2:77799898-77799917 Msa0094560:CDS 40.0%
ATCACAAACACTAGATCTCG+TGG + chr1_2:77800093-77800112 None:intergenic 40.0%
ACGAGATCTAGTGTTTGTGA+TGG - chr1_2:77800092-77800111 Msa0094560:intron 40.0%
CGAGATCTAGTGTTTGTGAT+GGG - chr1_2:77800093-77800112 Msa0094560:intron 40.0%
! ATCTAGTGTTTGTGATGGGA+AGG - chr1_2:77800097-77800116 Msa0094560:intron 40.0%
! TCTAGTGTTTGTGATGGGAA+GGG - chr1_2:77800098-77800117 Msa0094560:intron 40.0%
GATCAAAATAGATCGGGTGT+TGG - chr1_2:77800383-77800402 Msa0094560:intron 40.0%
! GAACTTTGAAGATTCTGACC+GGG - chr1_2:77800409-77800428 Msa0094560:intron 40.0%
GTACAAACTTACCGGAAAGT+TGG + chr1_2:77800800-77800819 None:intergenic 40.0%
AAGAGTAGTGGTTTCTCAAG+AGG - chr1_2:77801122-77801141 Msa0094560:intron 40.0%
!! AGAGGAGCATCAATTTACAG+AGG - chr1_2:77801140-77801159 Msa0094560:intron 40.0%
!! GAGGAGCATCAATTTACAGA+GGG - chr1_2:77801141-77801160 Msa0094560:intron 40.0%
!! AGGAGCATCAATTTACAGAG+GGG - chr1_2:77801142-77801161 Msa0094560:intron 40.0%
CAATTTACAGAGGGGTAACA+AGG - chr1_2:77801150-77801169 Msa0094560:intron 40.0%
! AAGGTAGAGGTCTTTGTTTC+CGG + chr1_2:77801363-77801382 None:intergenic 40.0%
!! AGTACATACTGAAAGTGCCA+AGG + chr1_2:77801382-77801401 None:intergenic 40.0%
GCAAATAGTTCTCTTCCCAT+AGG - chr1_2:77801898-77801917 Msa0094560:intron 40.0%
AATAGTTCTCTTCCCATAGG+AGG - chr1_2:77801901-77801920 Msa0094560:intron 40.0%
TCATCCATCTTCAACTTCGT+CGG - chr1_2:77802008-77802027 Msa0094560:intron 40.0%
! AAGACCCTTCTACCGATTAT+TGG - chr1_2:77802064-77802083 Msa0094560:intron 40.0%
TGGACCAATAATCGGTAGAA+GGG + chr1_2:77802071-77802090 None:intergenic 40.0%
TTGGACCAATAATCGGTAGA+AGG + chr1_2:77802072-77802091 None:intergenic 40.0%
TACTACCACACCATTCAACA+TGG - chr1_2:77802128-77802147 Msa0094560:intron 40.0%
ATTGTGGGGATTATCACTGT+TGG + chr1_2:77802181-77802200 None:intergenic 40.0%
CTGAAAAATGCTGCATTGTG+GGG + chr1_2:77802195-77802214 None:intergenic 40.0%
CACTGAAAAATGCTGCATTG+TGG + chr1_2:77802197-77802216 None:intergenic 40.0%
!! CACAATGCAGCATTTTTCAG+TGG - chr1_2:77802195-77802214 Msa0094560:CDS 40.0%
CAAAATATGAACGGAAGCAG+TGG - chr1_2:77802240-77802259 Msa0094560:CDS 40.0%
TGACGACGAAGATGAAGAAT+TGG + chr1_2:77802268-77802287 None:intergenic 40.0%
! ATTGGCGTTTGAAACAGACT+TGG + chr1_2:77802423-77802442 None:intergenic 40.0%
!! TGAAAGTGTTGAAGGAAGGA+AGG - chr1_2:77802536-77802555 Msa0094560:intron 40.0%
GAAGATGAGTGGGAAGGATT+AGG + chr1_2:77799084-77799103 None:intergenic 45.0%
TGAAGGAGTGGAAAAGAGAG+AGG + chr1_2:77799113-77799132 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGATA+GGG + chr1_2:77799193-77799212 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGAT+AGG + chr1_2:77799194-77799213 None:intergenic 45.0%
GGTGAATATGGAGAGGTTTG+TGG + chr1_2:77799352-77799371 None:intergenic 45.0%
CTAAGAAGTCCTCGAACTTG+TGG + chr1_2:77799380-77799399 None:intergenic 45.0%
CACAAGTTCGAGGACTTCTT+AGG - chr1_2:77799378-77799397 Msa0094560:CDS 45.0%
GAAAACTGCTGAAGCTGTGT+GGG + chr1_2:77799447-77799466 None:intergenic 45.0%
TTGAGGTTCGGAGTTTGGTT+CGG + chr1_2:77799541-77799560 None:intergenic 45.0%
!!! AGGAGAAGGCTTTTGAGGTT+CGG + chr1_2:77799553-77799572 None:intergenic 45.0%
CAGTGAGTTTAACAGAGTCG+AGG - chr1_2:77799655-77799674 Msa0094560:CDS 45.0%
GACAATAGTTGCAGAAGGGA+AGG - chr1_2:77799874-77799893 Msa0094560:CDS 45.0%
AGGGAAGGACAAAGTAGGAA+AGG - chr1_2:77799889-77799908 Msa0094560:CDS 45.0%
ATTGTGTCTAACGTGCGCTA+TGG - chr1_2:77800044-77800063 Msa0094560:intron 45.0%
TGACCACTGACCGGAATAAA+TGG - chr1_2:77800132-77800151 Msa0094560:intron 45.0%
GACCACTGACCGGAATAAAT+GGG - chr1_2:77800133-77800152 Msa0094560:intron 45.0%
TGACAGTGTGACTGATGCAT+TGG + chr1_2:77800308-77800327 None:intergenic 45.0%
CGAATCAGCAATCATTCACC+AGG + chr1_2:77800454-77800473 None:intergenic 45.0%
!! GGTGAATGATTGCTGATTCG+TGG - chr1_2:77800454-77800473 Msa0094560:CDS 45.0%
ATCTTGCTGCTCTCAAGTAC+TGG - chr1_2:77800758-77800777 Msa0094560:intron 45.0%
TCTTGCTGCTCTCAAGTACT+GGG - chr1_2:77800759-77800778 Msa0094560:intron 45.0%
AACGACCACTACCAACTTTC+CGG - chr1_2:77800786-77800805 Msa0094560:intron 45.0%
!! ACTTACCGGAAAGTTGGTAG+TGG + chr1_2:77800794-77800813 None:intergenic 45.0%
GGAAACAAAGACCTCTACCT+TGG - chr1_2:77801362-77801381 Msa0094560:intron 45.0%
!! TACTGAAAGTGCCAAGGTAG+AGG + chr1_2:77801376-77801395 None:intergenic 45.0%
GGTTTCTGATGCAGAATCTG+TGG + chr1_2:77801953-77801972 None:intergenic 45.0%
CAGCACTGCTAGGGTTATTA+TGG + chr1_2:77802107-77802126 None:intergenic 45.0%
TGGTAGTAACAGCACTGCTA+GGG + chr1_2:77802116-77802135 None:intergenic 45.0%
!! GCAGCATTTTTCAGTGGATC+AGG - chr1_2:77802201-77802220 Msa0094560:CDS 45.0%
!! GACTTGGCTTTGCATGTGTT+TGG + chr1_2:77802407-77802426 None:intergenic 45.0%
GGAATGAGCTCATGCATATC+AGG - chr1_2:77802452-77802471 Msa0094560:CDS 45.0%
!! TCATGCATATCAGGTGCTGA+TGG - chr1_2:77802461-77802480 Msa0094560:CDS 45.0%
GAAGGACAGTGTTGTAGTGA+TGG - chr1_2:77802554-77802573 Msa0094560:intron 45.0%
!! TAAATAAAAAAATATTAGAT+GGG + chr1_2:77801494-77801513 None:intergenic 5.0%
!! ATAAATAAAAAAATATTAGA+TGG + chr1_2:77801495-77801514 None:intergenic 5.0%
!! AAAATTTATTATTGATATAT+TGG - chr1_2:77801616-77801635 Msa0094560:intron 5.0%
!!! TCAATTTAATTTATAAATTT+AGG - chr1_2:77801769-77801788 Msa0094560:intron 5.0%
! CGATGGCGTTGAAGCTTAGT+TGG + chr1_2:77798940-77798959 None:intergenic 50.0%
GTTTGTAGGGGGTGAAGAAG+AGG + chr1_2:77799016-77799035 None:intergenic 50.0%
TGAGAGGAAGATGAGTGGGA+AGG + chr1_2:77799090-77799109 None:intergenic 50.0%
GAGGTGAGAGGAAGATGAGT+GGG + chr1_2:77799094-77799113 None:intergenic 50.0%
AGAGGTGAGAGGAAGATGAG+TGG + chr1_2:77799095-77799114 None:intergenic 50.0%
GTGGAAAAGAGAGAGGTGAG+AGG + chr1_2:77799106-77799125 None:intergenic 50.0%
AAGGATAAGGGGTGAAGGAG+TGG + chr1_2:77799125-77799144 None:intergenic 50.0%
AGAGGAAGGATAAGGGGTGA+AGG + chr1_2:77799130-77799149 None:intergenic 50.0%
GGAGAGAGAAAGACCTGTGA+GGG + chr1_2:77799172-77799191 None:intergenic 50.0%
GGCTGTTCTTGTTGGTGCAA+CGG + chr1_2:77799409-77799428 None:intergenic 50.0%
GGAAAACTGCTGAAGCTGTG+TGG + chr1_2:77799448-77799467 None:intergenic 50.0%
ACAATAGCTGCTTGCTTCCC+TGG - chr1_2:77799504-77799523 Msa0094560:CDS 50.0%
!!! GGCTTTTGAGGTTCGGAGTT+TGG + chr1_2:77799546-77799565 None:intergenic 50.0%
!! GCGTTGTCCGAAGGTATCAA+CGG + chr1_2:77799583-77799602 None:intergenic 50.0%
GCAGAAGGGAAGGACAAAGT+AGG - chr1_2:77799884-77799903 Msa0094560:CDS 50.0%
TGTCTAACGTGCGCTATGGA+TGG - chr1_2:77800048-77800067 Msa0094560:intron 50.0%
GATGGTACACGGGCAAAAGT+GGG - chr1_2:77800066-77800085 Msa0094560:intron 50.0%
CAGTGAATGTGACCACTGAC+CGG - chr1_2:77800123-77800142 Msa0094560:intron 50.0%
CTCCCATTTATTCCGGTCAG+TGG + chr1_2:77800138-77800157 None:intergenic 50.0%
! CTTGCTGCTCTCAAGTACTG+GGG - chr1_2:77800760-77800779 Msa0094560:intron 50.0%
!! GGAAAGTTGGTAGTGGTCGT+TGG + chr1_2:77800787-77800806 None:intergenic 50.0%
TGCCTATTCTTGCCTGCCAT+CGG + chr1_2:77801334-77801353 None:intergenic 50.0%
GCAAGAATAGGCAGAGTTGC+CGG - chr1_2:77801341-77801360 Msa0094560:intron 50.0%
GTTGCCGACGAAGTTGAAGA+TGG + chr1_2:77802015-77802034 None:intergenic 50.0%
GTGGTAGTAACAGCACTGCT+AGG + chr1_2:77802117-77802136 None:intergenic 50.0%
GGAAAGAGAGAAAGCGAGGG+AGG + chr1_2:77799049-77799068 None:intergenic 55.0%
AGACCTGTGAGGGTGAGAGA+TGG + chr1_2:77799162-77799181 None:intergenic 55.0%
GGGAGAGAGAAAGACCTGTG+AGG + chr1_2:77799173-77799192 None:intergenic 55.0%
TGCCTCTGGTGAAGCTTCCA+CGG + chr1_2:77799316-77799335 None:intergenic 55.0%
GCTTCACCAGAGGCAACAGA+TGG - chr1_2:77799321-77799340 Msa0094560:three_prime_UTR 55.0%
TCACCAGAGGCAACAGATGG+AGG - chr1_2:77799324-77799343 Msa0094560:three_prime_UTR 55.0%
GTTCCTCCATCTGTTGCCTC+TGG + chr1_2:77799330-77799349 None:intergenic 55.0%
CTTGTGGCTGCCGGTGAATA+TGG + chr1_2:77799364-77799383 None:intergenic 55.0%
ATAGCTGCTTGCTTCCCTGG+TGG - chr1_2:77799507-77799526 Msa0094560:CDS 55.0%
!! GTTCGGAGTTTGGTTCGGTG+GGG + chr1_2:77799536-77799555 None:intergenic 55.0%
!! GGTTCGGAGTTTGGTTCGGT+GGG + chr1_2:77799537-77799556 None:intergenic 55.0%
!! AGGTTCGGAGTTTGGTTCGG+TGG + chr1_2:77799538-77799557 None:intergenic 55.0%
CAACGCACCTCCATCTATCG+CGG - chr1_2:77799597-77799616 Msa0094560:CDS 55.0%
CGTGCGCTATGGATGGTACA+CGG - chr1_2:77800055-77800074 Msa0094560:intron 55.0%
GTGCGCTATGGATGGTACAC+GGG - chr1_2:77800056-77800075 Msa0094560:intron 55.0%
GGATGGTACACGGGCAAAAG+TGG - chr1_2:77800065-77800084 Msa0094560:intron 55.0%
CGGTCAGTGGTCACATTCAC+TGG + chr1_2:77800125-77800144 None:intergenic 55.0%
CCTGTGAGGGTGAGAGATGG+TGG + chr1_2:77799159-77799178 None:intergenic 60.0%
CCACCATCTCTCACCCTCAC+AGG - chr1_2:77799156-77799175 Msa0094560:three_prime_UTR 60.0%
GGCTGCCGGTGAATATGGAG+AGG + chr1_2:77799359-77799378 None:intergenic 60.0%
GTCCTCGAACTTGTGGCTGC+CGG + chr1_2:77799373-77799392 None:intergenic 60.0%
GTTGCGGCGGCTGTTCTTGT+TGG + chr1_2:77799417-77799436 None:intergenic 60.0%
CTGTGTGGGTGCACACGTTG+CGG + chr1_2:77799433-77799452 None:intergenic 60.0%
! GATGGAGGTGCGTTGTCCGA+AGG + chr1_2:77799592-77799611 None:intergenic 60.0%
GGTGACACCGCGATAGATGG+AGG + chr1_2:77799607-77799626 None:intergenic 60.0%
CCTGGTGACACCGCGATAGA+TGG + chr1_2:77799610-77799629 None:intergenic 60.0%
!! CCATCTATCGCGGTGTCACC+AGG - chr1_2:77799607-77799626 Msa0094560:CDS 60.0%
TGGTGCAGACACCACCAGCA+TGG - chr1_2:77801308-77801327 Msa0094560:intron 60.0%
GGCCGATGGCAGGCAAGAAT+AGG - chr1_2:77801329-77801348 Msa0094560:intron 60.0%
TCCAGGAAGCAGCAACGCCG+TGG - chr1_2:77799296-77799315 Msa0094560:three_prime_UTR 65.0%
! TCCACGGCGTTGCTGCTTCC+TGG + chr1_2:77799300-77799319 None:intergenic 65.0%
CGCCGTGGAAGCTTCACCAG+AGG - chr1_2:77799311-77799330 Msa0094560:three_prime_UTR 65.0%
CACCGGCAGCCACAAGTTCG+AGG - chr1_2:77799368-77799387 Msa0094560:CDS 65.0%
TGTGGGTGCACACGTTGCGG+CGG + chr1_2:77799430-77799449 None:intergenic 65.0%
! GTTCGGTGGGGTAGCCACCA+GGG + chr1_2:77799524-77799543 None:intergenic 65.0%
GACACCACCAGCATGGCCGA+TGG - chr1_2:77801315-77801334 Msa0094560:intron 65.0%
TTGCCTGCCATCGGCCATGC+TGG + chr1_2:77801325-77801344 None:intergenic 65.0%
!! GGTTCGGTGGGGTAGCCACC+AGG + chr1_2:77799525-77799544 None:intergenic 70.0%
CCTGCCATCGGCCATGCTGG+TGG + chr1_2:77801322-77801341 None:intergenic 70.0%
CCACCAGCATGGCCGATGGC+AGG - chr1_2:77801319-77801338 Msa0094560:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77798897 77802926 77798897 ID=Msa0094560;Name=Msa0094560
chr1_2 mRNA 77798897 77802926 77798897 ID=Msa0094560-mRNA-1;Parent=Msa0094560;Name=Msa0094560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=106|0.85|1|1|1|1|8|468|514
chr1_2 exon 77798897 77800032 77798897 ID=Msa0094560-mRNA-1:exon:27648;Parent=Msa0094560-mRNA-1
chr1_2 exon 77800431 77800507 77800431 ID=Msa0094560-mRNA-1:exon:27647;Parent=Msa0094560-mRNA-1
chr1_2 exon 77800652 77800702 77800652 ID=Msa0094560-mRNA-1:exon:27646;Parent=Msa0094560-mRNA-1
chr1_2 exon 77800818 77800891 77800818 ID=Msa0094560-mRNA-1:exon:27645;Parent=Msa0094560-mRNA-1
chr1_2 exon 77801016 77801104 77801016 ID=Msa0094560-mRNA-1:exon:27644;Parent=Msa0094560-mRNA-1
chr1_2 exon 77801904 77801986 77801904 ID=Msa0094560-mRNA-1:exon:27643;Parent=Msa0094560-mRNA-1
chr1_2 exon 77802195 77802522 77802195 ID=Msa0094560-mRNA-1:exon:27642;Parent=Msa0094560-mRNA-1
chr1_2 exon 77802646 77802926 77802646 ID=Msa0094560-mRNA-1:exon:27641;Parent=Msa0094560-mRNA-1
chr1_2 five_prime_UTR 77802821 77802926 77802821 ID=Msa0094560-mRNA-1:five_prime_utr;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77802646 77802820 77802646 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77802195 77802522 77802195 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77801904 77801986 77801904 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77801016 77801104 77801016 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77800818 77800891 77800818 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77800652 77800702 77800652 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77800431 77800507 77800431 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 CDS 77799365 77800032 77799365 ID=Msa0094560-mRNA-1:cds;Parent=Msa0094560-mRNA-1
chr1_2 three_prime_UTR 77798897 77799364 77798897 ID=Msa0094560-mRNA-1:three_prime_utr;Parent=Msa0094560-mRNA-1
Gene Sequence

>Msa0094560

ATGGACAAATCCTCTTCTTCACCCCCTACAAACACTAACAACACCTCCCTCGCTTTCTCTCTTTCCAATAATAACTTTCCTAATCCTTCCCACTCATCTTCCTCTCACCTCTCTCTTTTCCACTCCTTCACCCCTTATCCTTCCTCTATAATACCACCATCTCTCACCCTCACAGGAAGCAGCAACGCCGTGGAAGCTTCACCAGAGGCAACAGATGGAGGAACCACAAACCTCTCCATATTCACCGGCAGCCACAAGTTCGAGGACTTCTTAGGAAGCTCCGTTGCACCAACAAGAACAGCCGCCGCAACGTGTGCACCCACACAGCTTCAGCAGTTTTCCACCGACAATGATATATATAATTCCGAGCTGAAGAAAACAATAGCTGCTTGCTTCCCTGGTGGCTACCCCACCGAACCAAACTCCGAACCTCAAAAGCCTTCTCCTAAAAAAACCGTTGATACCTTCGGACAACGCACCTCCATCTATCGCGGTGTCACCAGACATAGATGGACGGGGAGATATGAAGCACATCTATGGGACAATAGTTGCAGAAGGGAAGGACAAAGTAGGAAAGGAAGACAAGGTGGCTATGATAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACGACCACTACCAACTTTCCGATTTCCAACTATGAGAAGGAGATTGATGACATGAAGAACATGACTAGACAAGAATTTGTTGCTTCTCTACGAAGGAAGAGTAGTGGTTTCTCAAGAGGAGCATCAATTTACAGAGGGGTAACAAGACACCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAAGAAGCTGCAGAAGCGTATGATATTGCAGCAATCAAATTTAGAGGACTAAATGCAGTAACAAATTTTGACATGAGTCGCTACGACGTAAAGAGTATTGCAAATAGTTCTCTTCCCATAGGAGGTTTATCAAATAAGAACAACAAAAATTCCACAGATTCTGCATCAGAAACCAAAATCAACGAACCAATTCAATCTGACGAAATAGATCATCCATCTTCAACTTCGTCGGCAACAACTTTAAGCTTCGCCTTACCTATTAAACAAGACCCTTCTACCGATTATTGGTCCAATATTCTCGGCTTCCATAATAACCCTAGCAGTGCTGTTACTACCACACCATTCAACATGGATTTTTCTGCTCATGCACCTTCAAATACCAACAGTGATAATCCCCACAATGCAGCATTTTTCAGTGGATCAGGTATATTTTTTCAGCAACAAAATATGAACGGAAGCAGTGGTTCCAATTCTTCATCTTCGTCGTCAGCTTCAACGAGTTCAATTCCATTCGCAACACCAATATTTTCTTTAAATAGTAATAGTAGTAGTTATGAGAATGGTACTAGTTATGGAAATGGAAATAACTGGATTGGACACACATTCCAAACACATGCAAAGCCAAGTCTGTTTCAAACGCCAATATTTGGAATGGAATGA
Protein sequence

>Msa0094560

MDKSSSSPPTNTNNTSLAFSLSNNNFPNPSHSSSSHLSLFHSFTPYPSSIIPPSLTLTGSSNAVEASPEATDGGTTNLSIFTGSHKFEDFLGSSVAPTRTAAATCAPTQLQQFSTDNDIYNSELKKTIAACFPGGYPTEPNSEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKEIDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSASETKINEPIQSDEIDHPSSTSSATTLSFALPIKQDPSTDYWSNILGFHNNPSSAVTTTPFNMDFSAHAPSNTNSDNPHNAAFFSGSGIFFQQQNMNGSSGSNSSSSSSASTSSIPFATPIFSLNSNSSSYENGTSYGNGNNWIGHTFQTHAKPSLFQTPIFGME*