AlfalfaGEDB | Msa0260870

M. sativa cultivar zhongmu-4 / Msa0260870

KEGG: K05359
GO: GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223
PFAM: PF00800.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260870	XP_003596963.1	96.533	375	13	0	1	375	1	375	0.0	746

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260870	sp\|Q9SA96\|AROD1_ARATH	66.773	313	104	0	60	372	77	389	1.32e-154	443

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260870	A2Q4I2	96.533	375	13	0	1	375	1	375	0.0	746

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0260870	0.889127	3.197056e-73	-8.615850e-47
Msa0003340	Msa0260870	0.815692	8.114426e-52	-8.615850e-47
Msa0007810	Msa0260870	0.808187	3.502815e-50	-8.615850e-47
Msa0016380	Msa0260870	0.836478	9.138649e-57	-8.615850e-47
Msa0017300	Msa0260870	0.873281	1.660406e-67	-8.615850e-47
Msa0024500	Msa0260870	0.827422	1.578631e-54	-8.615850e-47
Msa0027030	Msa0260870	0.805037	1.619323e-49	-8.615850e-47
Msa0030760	Msa0260870	0.801608	8.310505e-49	-8.615850e-47
Msa0032890	Msa0260870	0.811698	6.146814e-51	-8.615850e-47
Msa0033190	Msa0260870	0.808126	3.610461e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260870	MtrunA17_Chr2g0322461	96.533	375	13	0	1	375	1	375	0.0	746
Msa0260870	MtrunA17_Chr4g0074991	67.197	314	103	0	62	375	80	393	2.26e-157	447
Msa0260870	MtrunA17_Chr2g0320971	58.242	364	146	3	13	374	62	421	2.80e-143	413
Msa0260870	MtrunA17_Chr4g0027131	63.399	306	110	1	71	374	103	408	1.90e-138	400
Msa0260870	MtrunA17_Chr4g0030101	61.300	323	118	2	52	374	58	373	2.22e-135	391

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260870	AT1G11790.1	66.773	313	104	0	60	372	77	389	1.35e-155	443
Msa0260870	AT1G08250.1	64.356	303	106	1	72	372	99	401	6.84e-140	404
Msa0260870	AT2G27820.1	62.951	305	111	1	72	374	104	408	3.88e-137	397
Msa0260870	AT3G07630.3	62.745	306	109	1	70	375	80	380	7.68e-132	382
Msa0260870	AT3G07630.2	62.745	306	109	1	70	375	80	380	7.68e-132	382
Msa0260870	AT3G07630.1	62.745	306	109	1	70	375	80	380	7.68e-132	382
Msa0260870	AT3G44720.1	58.958	307	122	2	72	374	108	414	1.46e-126	371
Msa0260870	AT5G22630.1	58.413	315	127	2	64	374	101	415	7.22e-123	361
Msa0260870	AT1G11790.2	62.302	252	95	0	60	311	77	328	2.28e-112	332

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Find 113 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGAACAGCACCCC+AGG	0.551093	2_2:-58792917	None:intergenic
AAAGTCGCCCACAAAGAAAT+CGG	0.470071	2_2:+58793065	Msa0260870:CDS
AACAAGAGATGCCATAGCCA+TGG	0.584871	2_2:-58788885	None:intergenic
AACCACATGCATCATTATCT+TGG	0.447822	2_2:-58789002	None:intergenic
AACCGCTTTAGAACATCTGC+AGG	0.560617	2_2:+58793355	Msa0260870:CDS
AAGATATATATTAGTTGTAT+TGG	0.339583	2_2:-58793995	None:intergenic
AAGTTGCAAGATCGACCCAA+GGG	0.636137	2_2:+58793801	Msa0260870:three_prime_UTR
AATAACCAAAGTTTCTATTT+TGG	0.111093	2_2:+58788760	Msa0260870:five_prime_UTR
AATAGAAACTTTGGTTATTT+TGG	0.010780	2_2:-58788756	None:intergenic
AATCAAAGTCAAGTGGGTAG+TGG	0.552304	2_2:+58789031	Msa0260870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAACCCAAAATAGAAACTT+TGG	-	chr2_2:58788768-58788787	None:intergenic	30.0%
AAGTGTGAGAAATGGAAAAA+GGG	-	chr2_2:58788790-58788809	None:intergenic	30.0%
AACTAATATGTACTCAACCA+TGG	-	chr2_2:58789392-58789411	None:intergenic	30.0%
AAGAAATAGATGACATTGAG+AGG	+	chr2_2:58789701-58789720	Msa0260870:intron	30.0%
AGAAATAGATGACATTGAGA+GGG	+	chr2_2:58789702-58789721	Msa0260870:intron	30.0%
AATACAAACTTCTCCTCATT+TGG	+	chr2_2:58789754-58789773	Msa0260870:intron	30.0%
ATACAAACTTCTCCTCATTT+GGG	+	chr2_2:58789755-58789774	Msa0260870:intron	30.0%
CTCAAAAATTGTATTGGAGA+AGG	+	chr2_2:58789782-58789801	Msa0260870:intron	30.0%
TTGGAGGGTTGAAAATATAA+GGG	-	chr2_2:58789946-58789965	None:intergenic	30.0%
TTTGGAGGGTTGAAAATATA+AGG	-	chr2_2:58789947-58789966	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	58788731	58794019	58788731	ID=Msa0260870;Name=Msa0260870
chr2_2	mRNA	58788731	58794019	58788731	ID=Msa0260870-mRNA-1;Parent=Msa0260870;Name=Msa0260870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=156\|1\|1\|1\|1\|1\|11\|431\|375
chr2_2	exon	58788731	58789100	58788731	ID=Msa0260870-mRNA-1:exon:18105;Parent=Msa0260870-mRNA-1
chr2_2	exon	58790434	58790501	58790434	ID=Msa0260870-mRNA-1:exon:18106;Parent=Msa0260870-mRNA-1
chr2_2	exon	58790588	58790680	58790588	ID=Msa0260870-mRNA-1:exon:18107;Parent=Msa0260870-mRNA-1
chr2_2	exon	58790801	58791001	58790801	ID=Msa0260870-mRNA-1:exon:18108;Parent=Msa0260870-mRNA-1
chr2_2	exon	58791477	58791557	58791477	ID=Msa0260870-mRNA-1:exon:18109;Parent=Msa0260870-mRNA-1
chr2_2	exon	58791651	58791746	58791651	ID=Msa0260870-mRNA-1:exon:18110;Parent=Msa0260870-mRNA-1
chr2_2	exon	58792724	58792801	58792724	ID=Msa0260870-mRNA-1:exon:18111;Parent=Msa0260870-mRNA-1
chr2_2	exon	58792887	58792976	58792887	ID=Msa0260870-mRNA-1:exon:18112;Parent=Msa0260870-mRNA-1
chr2_2	exon	58793061	58793128	58793061	ID=Msa0260870-mRNA-1:exon:18113;Parent=Msa0260870-mRNA-1
chr2_2	exon	58793295	58793376	58793295	ID=Msa0260870-mRNA-1:exon:18114;Parent=Msa0260870-mRNA-1
chr2_2	exon	58793532	58794019	58793532	ID=Msa0260870-mRNA-1:exon:18115;Parent=Msa0260870-mRNA-1
chr2_2	five_prime_UTR	58788731	58788886	58788731	ID=Msa0260870-mRNA-1:five_prime_utr;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58788887	58789100	58788887	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58790434	58790501	58790434	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58790588	58790680	58790588	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58790801	58791001	58790801	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58791477	58791557	58791477	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58791651	58791746	58791651	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58792724	58792801	58792724	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58792887	58792976	58792887	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58793061	58793128	58793061	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58793295	58793376	58793295	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	CDS	58793532	58793588	58793532	ID=Msa0260870-mRNA-1:cds;Parent=Msa0260870-mRNA-1
chr2_2	three_prime_UTR	58793589	58794019	58793589	ID=Msa0260870-mRNA-1:three_prime_utr;Parent=Msa0260870-mRNA-1

Gene Sequence

>Msa0260870

ATGGCTATGGCATCTCTTGTTGTACCAGGGCTCTCAAGTTCTCAACTTTATAGTCAAAATCATCTGAAAAGTGCACAAAAATGGGTTTTCCTTGGTGGGTTTTCTGTTAGAAGAGCCAAGATAATGATGCATGTGGTTGATCACAATCAAAGTCAAGTGGGTAGTGGTGGTGATGTCTCTTATGGATTGCATAAAGATTTGGTATCCCTTCCAAGGCCATTATCCATATCTGATATTGCGGCAGCTTCTGATGATCTTGCCAAAGTACGAATATCATATCAGGGGATACCAGGATCATACAGCGAGGATGCTGCACTTAAAGCTTACCCTAATTGTGAAACAATCTCATGCAGTGATTTTGAAGAGGCTTTTAAGGCTGTTGAGTTGTGGCTGGCTCATAAAGTTGTCATTCCAATTGAAAATACATCTGGTGGAAGCATTCACCGGAACTATGATTTACTTCTTCGTCATAGGCTTCACATTGTTGGCGAGGTGCAGTTGGCTACTAACCTCTCCCTCCTAGCTATGCCTGGTGTCAGAAAAGAGTTCCTTAAACGTGTTTTAAGTCATTCTCAGGCTCTTGCTTTAAGTGATACTTTCCTGAATAAATTAGGTGTTAGCAGAGAAAATGTTGATGATACAGCAGGTGCTGCTCAGATTGTAGCTTCAAATGGTCTGTACGATACTGGTGCTATTGCAAGCATTCGAGCTGCCAAAATCTATGGGCTTAATGTACTTGCAGAAGGAATCCAGGATGATTCTGAAATCATCAGTCGTTATCTTGTGCTTGCAAGGGATCCAATAATTCCAAGATCCAATAAGCCTTTTAAGACAAGCATTGTGTTTACACTGAATGAAGGTCCTGGGGTGCTGTTCAAGGTTTTGGCGGTATTTGCAATGAGGGACATAAATTTAACCAAGATCGAAAGTCGCCCACAAAGAAATCGGCCACTAAGAGTCGTTGACGACTCCAACACTGGAACTGCCAAATACTTTGATTACCTTTTCTATATTGATTTTGAGGCATCTATGACTGATCCCCGAGCACAAACCGCTTTAGAACATCTGCAGGAATTTGCGACATTTCTTCGAGTTCTTGGATGCTATCCCATAGATACAACCATATAG

Protein sequence

>Msa0260870

MAMASLVVPGLSSSQLYSQNHLKSAQKWVFLGGFSVRRAKIMMHVVDHNQSQVGSGGDVSYGLHKDLVSLPRPLSISDIAAASDDLAKVRISYQGIPGSYSEDAALKAYPNCETISCSDFEEAFKAVELWLAHKVVIPIENTSGGSIHRNYDLLLRHRLHIVGEVQLATNLSLLAMPGVRKEFLKRVLSHSQALALSDTFLNKLGVSRENVDDTAGAAQIVASNGLYDTGAIASIRAAKIYGLNVLAEGIQDDSEIISRYLVLARDPIIPRSNKPFKTSIVFTLNEGPGVLFKVLAVFAMRDINLTKIESRPQRNRPLRVVDDSNTGTAKYFDYLFYIDFEASMTDPRAQTALEHLQEFATFLRVLGCYPIDTTI*