Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178610 | sp|Q9SKI2|VPS2A_ARATH | 88.444 | 225 | 24 | 2 | 1 | 224 | 2 | 225 | 4.09e-126 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178610 | A0A072TY45 | 98.661 | 224 | 3 | 0 | 1 | 224 | 1 | 224 | 4.92e-157 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa1178610 | 0.802149 | 6.432350e-49 | -8.615850e-47 |
| Msa0012040 | Msa1178610 | 0.816183 | 6.305254e-52 | -8.615850e-47 |
| Msa0020930 | Msa1178610 | 0.800561 | 1.360578e-48 | -8.615850e-47 |
| Msa0044020 | Msa1178610 | 0.806385 | 8.441642e-50 | -8.615850e-47 |
| Msa0047980 | Msa1178610 | 0.803178 | 3.945225e-49 | -8.615850e-47 |
| Msa0050760 | Msa1178610 | 0.801738 | 7.815423e-49 | -8.615850e-47 |
| Msa0085360 | Msa1178610 | -0.807452 | 5.020940e-50 | -8.615850e-47 |
| Msa0089380 | Msa1178610 | 0.851461 | 8.744799e-61 | -8.615850e-47 |
| Msa0094100 | Msa1178610 | 0.804181 | 2.442951e-49 | -8.615850e-47 |
| Msa0094920 | Msa1178610 | 0.802699 | 4.956487e-49 | -8.615850e-47 |
| Msa0105420 | Msa1178610 | 0.814063 | 1.864516e-51 | -8.615850e-47 |
| Msa0110970 | Msa1178610 | 0.821197 | 4.589409e-53 | -8.615850e-47 |
| Msa0114540 | Msa1178610 | -0.800366 | 1.490643e-48 | -8.615850e-47 |
| Msa0119850 | Msa1178610 | 0.801961 | 7.031397e-49 | -8.615850e-47 |
| Msa0621490 | Msa1178610 | 0.800115 | 1.677046e-48 | -8.615850e-47 |
| Msa0621590 | Msa1178610 | 0.828691 | 7.808085e-55 | -8.615850e-47 |
| Msa0623080 | Msa1178610 | 0.827893 | 1.216580e-54 | -8.615850e-47 |
| Msa0623700 | Msa1178610 | 0.803439 | 3.483627e-49 | -8.615850e-47 |
| Msa0638280 | Msa1178610 | 0.828079 | 1.097089e-54 | -8.615850e-47 |
| Msa0638320 | Msa1178610 | 0.829496 | 4.982167e-55 | -8.615850e-47 |
| Msa0669850 | Msa1178610 | 0.805427 | 1.341718e-49 | -8.615850e-47 |
| Msa0677270 | Msa1178610 | 0.827922 | 1.197046e-54 | -8.615850e-47 |
| Msa0689010 | Msa1178610 | 0.814116 | 1.814388e-51 | -8.615850e-47 |
| Msa0693380 | Msa1178610 | 0.838195 | 3.322531e-57 | -8.615850e-47 |
| Msa0743260 | Msa1178610 | 0.803624 | 3.189500e-49 | -8.615850e-47 |
| Msa0756630 | Msa1178610 | -0.808581 | 2.887153e-50 | -8.615850e-47 |
| Msa0760380 | Msa1178610 | 0.808436 | 3.100105e-50 | -8.615850e-47 |
| Msa0788710 | Msa1178610 | 0.819739 | 9.913158e-53 | -8.615850e-47 |
| Msa0790510 | Msa1178610 | 0.804900 | 1.729834e-49 | -8.615850e-47 |
| Msa0124340 | Msa1178610 | 0.829437 | 5.150461e-55 | -8.615850e-47 |
| Msa0165220 | Msa1178610 | 0.801869 | 7.346809e-49 | -8.615850e-47 |
| Msa0184960 | Msa1178610 | 0.802353 | 5.840183e-49 | -8.615850e-47 |
| Msa0188630 | Msa1178610 | 0.819330 | 1.229205e-52 | -8.615850e-47 |
| Msa0191050 | Msa1178610 | 0.811315 | 7.443195e-51 | -8.615850e-47 |
| Msa0197660 | Msa1178610 | 0.806008 | 1.013222e-49 | -8.615850e-47 |
| Msa0217400 | Msa1178610 | 0.812641 | 3.827899e-51 | -8.615850e-47 |
| Msa0220580 | Msa1178610 | 0.803504 | 3.378101e-49 | -8.615850e-47 |
| Msa0222920 | Msa1178610 | 0.805367 | 1.381283e-49 | -8.615850e-47 |
| Msa0227400 | Msa1178610 | 0.812204 | 4.769137e-51 | -8.615850e-47 |
| Msa0230770 | Msa1178610 | 0.808702 | 2.719911e-50 | -8.615850e-47 |
| Msa0233350 | Msa1178610 | 0.817911 | 2.579720e-52 | -8.615850e-47 |
| Msa0372660 | Msa1178610 | 0.811641 | 6.324041e-51 | -8.615850e-47 |
| Msa0372670 | Msa1178610 | 0.814514 | 1.482341e-51 | -8.615850e-47 |
| Msa0380040 | Msa1178610 | 0.829252 | 5.712100e-55 | -8.615850e-47 |
| Msa0389340 | Msa1178610 | 0.800271 | 1.558690e-48 | -8.615850e-47 |
| Msa0402330 | Msa1178610 | 0.818491 | 1.906883e-52 | -8.615850e-47 |
| Msa0414950 | Msa1178610 | -0.828724 | 7.669247e-55 | -8.615850e-47 |
| Msa0426330 | Msa1178610 | 0.816826 | 4.526143e-52 | -8.615850e-47 |
| Msa0429290 | Msa1178610 | 0.818042 | 2.409214e-52 | -8.615850e-47 |
| Msa0431670 | Msa1178610 | 0.805012 | 1.639154e-49 | -8.615850e-47 |
| Msa0432770 | Msa1178610 | 0.820466 | 6.757043e-53 | -8.615850e-47 |
| Msa0442670 | Msa1178610 | 0.800836 | 1.195774e-48 | -8.615850e-47 |
| Msa0452960 | Msa1178610 | 0.800510 | 1.393283e-48 | -8.615850e-47 |
| Msa0467900 | Msa1178610 | -0.805533 | 1.274797e-49 | -8.615850e-47 |
| Msa0473240 | Msa1178610 | 0.803582 | 3.253799e-49 | -8.615850e-47 |
| Msa0475580 | Msa1178610 | 0.819155 | 1.346912e-52 | -8.615850e-47 |
| Msa0480000 | Msa1178610 | 0.809018 | 2.327541e-50 | -8.615850e-47 |
| Msa0480320 | Msa1178610 | 0.831330 | 1.775008e-55 | -8.615850e-47 |
| Msa0992490 | Msa1178610 | -0.801051 | 1.080514e-48 | -8.615850e-47 |
| Msa1029270 | Msa1178610 | 0.806375 | 8.481994e-50 | -8.615850e-47 |
| Msa1040890 | Msa1178610 | 0.829027 | 6.476469e-55 | -8.615850e-47 |
| Msa1046020 | Msa1178610 | 0.809052 | 2.289865e-50 | -8.615850e-47 |
| Msa1046060 | Msa1178610 | 0.810279 | 1.247275e-50 | -8.615850e-47 |
| Msa1075220 | Msa1178610 | -0.801666 | 8.085949e-49 | -8.615850e-47 |
| Msa1082500 | Msa1178610 | 0.848693 | 5.208931e-60 | -8.615850e-47 |
| Msa1083210 | Msa1178610 | 0.818402 | 1.996965e-52 | -8.615850e-47 |
| Msa1085920 | Msa1178610 | 0.807604 | 4.660884e-50 | -8.615850e-47 |
| Msa1090260 | Msa1178610 | 0.801114 | 1.048877e-48 | -8.615850e-47 |
| Msa1097840 | Msa1178610 | 0.802158 | 6.405478e-49 | -8.615850e-47 |
| Msa0239800 | Msa1178610 | 0.807747 | 4.345310e-50 | -8.615850e-47 |
| Msa0243710 | Msa1178610 | 0.807660 | 4.534471e-50 | -8.615850e-47 |
| Msa0244270 | Msa1178610 | 0.801557 | 8.513615e-49 | -8.615850e-47 |
| Msa0257250 | Msa1178610 | 0.803342 | 3.649119e-49 | -8.615850e-47 |
| Msa0258760 | Msa1178610 | 0.822521 | 2.266189e-53 | -8.615850e-47 |
| Msa0260210 | Msa1178610 | 0.801128 | 1.042002e-48 | -8.615850e-47 |
| Msa0265380 | Msa1178610 | 0.818778 | 1.640959e-52 | -8.615850e-47 |
| Msa0265820 | Msa1178610 | 0.806055 | 9.907356e-50 | -8.615850e-47 |
| Msa0270100 | Msa1178610 | 0.809953 | 1.466287e-50 | -8.615850e-47 |
| Msa0270270 | Msa1178610 | 0.822949 | 1.801939e-53 | -8.615850e-47 |
| Msa0282250 | Msa1178610 | 0.830693 | 2.543449e-55 | -8.615850e-47 |
| Msa0287650 | Msa1178610 | 0.801899 | 7.242371e-49 | -8.615850e-47 |
| Msa0289510 | Msa1178610 | 0.817830 | 2.690884e-52 | -8.615850e-47 |
| Msa0296560 | Msa1178610 | 0.804279 | 2.331155e-49 | -8.615850e-47 |
| Msa0296760 | Msa1178610 | 0.806530 | 7.864685e-50 | -8.615850e-47 |
| Msa0303360 | Msa1178610 | 0.815265 | 1.010316e-51 | -8.615850e-47 |
| Msa0311860 | Msa1178610 | 0.808281 | 3.344775e-50 | -8.615850e-47 |
| Msa0317510 | Msa1178610 | 0.809702 | 1.660471e-50 | -8.615850e-47 |
| Msa0323080 | Msa1178610 | 0.810897 | 9.172611e-51 | -8.615850e-47 |
| Msa0323180 | Msa1178610 | 0.804033 | 2.622596e-49 | -8.615850e-47 |
| Msa0335040 | Msa1178610 | 0.842326 | 2.768969e-58 | -8.615850e-47 |
| Msa0342360 | Msa1178610 | 0.807813 | 4.207615e-50 | -8.615850e-47 |
| Msa0344830 | Msa1178610 | 0.814684 | 1.359264e-51 | -8.615850e-47 |
| Msa0344870 | Msa1178610 | 0.804412 | 2.187457e-49 | -8.615850e-47 |
| Msa0347360 | Msa1178610 | 0.801236 | 9.904328e-49 | -8.615850e-47 |
| Msa0355270 | Msa1178610 | 0.818952 | 1.498370e-52 | -8.615850e-47 |
| Msa0356890 | Msa1178610 | -0.810179 | 1.311069e-50 | -8.615850e-47 |
| Msa1111110 | Msa1178610 | 0.801946 | 7.081633e-49 | -8.615850e-47 |
| Msa1113200 | Msa1178610 | 0.808851 | 2.527258e-50 | -8.615850e-47 |
| Msa1116130 | Msa1178610 | -0.815759 | 7.840362e-52 | -8.615850e-47 |
| Msa1124310 | Msa1178610 | 0.814929 | 1.199136e-51 | -8.615850e-47 |
| Msa1154710 | Msa1178610 | 0.801190 | 1.011854e-48 | -8.615850e-47 |
| Msa1170280 | Msa1178610 | 0.819874 | 9.233790e-53 | -8.615850e-47 |
| Msa1171870 | Msa1178610 | 0.821500 | 3.907342e-53 | -8.615850e-47 |
| Msa1178610 | Msa1187840 | 0.812938 | 3.294935e-51 | -8.615850e-47 |
| Msa1178610 | Msa1199560 | 0.811628 | 6.367274e-51 | -8.615850e-47 |
| Msa1178610 | Msa1199620 | 0.813075 | 3.074602e-51 | -8.615850e-47 |
| Msa1178610 | Msa1203250 | 0.814067 | 1.860365e-51 | -8.615850e-47 |
| Msa1178610 | Msa1206020 | 0.805051 | 1.608892e-49 | -8.615850e-47 |
| Msa1178610 | Msa1214270 | 0.832229 | 1.065200e-55 | -8.615850e-47 |
| Msa1178610 | Msa1214890 | 0.802370 | 5.794859e-49 | -8.615850e-47 |
| Msa1178610 | Msa1217830 | 0.812429 | 4.259211e-51 | -8.615850e-47 |
| Msa1178610 | Msa1233500 | 0.800992 | 1.111113e-48 | -8.615850e-47 |
| Msa1178610 | Msa1267260 | 0.801639 | 8.190384e-49 | -8.615850e-47 |
| Msa1178610 | Msa1270610 | 0.804124 | 2.510762e-49 | -8.615850e-47 |
| Msa1178610 | Msa1271210 | 0.800004 | 1.766543e-48 | -8.615850e-47 |
| Msa1178610 | Msa1271280 | 0.800922 | 1.148271e-48 | -8.615850e-47 |
| Msa1178610 | Msa1271300 | 0.800592 | 1.340418e-48 | -8.615850e-47 |
| Msa1178610 | Msa1279210 | 0.810666 | 1.029101e-50 | -8.615850e-47 |
| Msa1178610 | Msa1288170 | 0.800960 | 1.127984e-48 | -8.615850e-47 |
| Msa1178610 | Msa1300350 | -0.829033 | 6.453678e-55 | -8.615850e-47 |
| Msa1178610 | Msa1303160 | 0.804568 | 2.029032e-49 | -8.615850e-47 |
| Msa1178610 | Msa1304820 | 0.805734 | 1.157179e-49 | -8.615850e-47 |
| Msa1178610 | Msa1306430 | 0.824023 | 1.010476e-53 | -8.615850e-47 |
| Msa1178610 | Msa1314100 | 0.817520 | 3.160899e-52 | -8.615850e-47 |
| Msa1178610 | Msa1314340 | 0.829303 | 5.550809e-55 | -8.615850e-47 |
| Msa1178610 | Msa1322890 | 0.806493 | 8.009827e-50 | -8.615850e-47 |
| Msa1178610 | Msa1328700 | 0.816035 | 6.803497e-52 | -8.615850e-47 |
| Msa1178610 | Msa1328850 | 0.802184 | 6.328367e-49 | -8.615850e-47 |
| Msa1178610 | Msa1331910 | 0.810023 | 1.416620e-50 | -8.615850e-47 |
| Msa1178610 | Msa1340020 | 0.800089 | 1.697510e-48 | -8.615850e-47 |
| Msa1178610 | Msa1340650 | 0.837352 | 5.467578e-57 | -8.615850e-47 |
| Msa1178610 | Msa1351730 | 0.813883 | 2.042705e-51 | -8.615850e-47 |
| Msa1178610 | Msa1358870 | -0.805569 | 1.252810e-49 | -8.615850e-47 |
| Msa1178610 | Msa1369530 | 0.808398 | 3.158331e-50 | -8.615850e-47 |
| Msa1178610 | Msa1371430 | 0.816966 | 4.210001e-52 | -8.615850e-47 |
| Msa1178610 | Msa1384350 | 0.808040 | 3.764982e-50 | -8.615850e-47 |
| Msa1178610 | Msa1386230 | 0.819733 | 9.948189e-53 | -8.615850e-47 |
| Msa1178610 | Msa1392260 | 0.802796 | 4.732476e-49 | -8.615850e-47 |
| Msa1178610 | Msa1397810 | 0.804497 | 2.099703e-49 | -8.615850e-47 |
| Msa1178610 | Msa1403930 | -0.806408 | 8.347089e-50 | -8.615850e-47 |
| Msa1178610 | Msa1408790 | 0.808977 | 2.375593e-50 | -8.615850e-47 |
| Msa1178610 | Msa1415640 | 0.825303 | 5.044797e-54 | -8.615850e-47 |
| Msa1178610 | Msa1427060 | 0.805215 | 1.486553e-49 | -8.615850e-47 |
| Msa1178610 | Msa1427830 | 0.803329 | 3.672047e-49 | -8.615850e-47 |
| Msa1178610 | Msa1429900 | 0.811470 | 6.888851e-51 | -8.615850e-47 |
| Msa1178610 | Msa1431040 | 0.822863 | 1.886958e-53 | -8.615850e-47 |
| Msa1178610 | Msa1439960 | 0.801646 | 8.161106e-49 | -8.615850e-47 |
| Msa1178610 | Msa1440000 | 0.807065 | 6.064495e-50 | -8.615850e-47 |
| Msa1178610 | Msa1440600 | 0.803901 | 2.794558e-49 | -8.615850e-47 |
| Msa1178610 | Msa1441190 | 0.804559 | 2.038188e-49 | -8.615850e-47 |
| Msa1178610 | Msa1454110 | 0.802522 | 5.390013e-49 | -8.615850e-47 |
| Msa1178610 | Msa1460020 | 0.811674 | 6.219930e-51 | -8.615850e-47 |
| Msa0484780 | Msa1178610 | 0.830263 | 3.240125e-55 | -8.615850e-47 |
| Msa0488400 | Msa1178610 | 0.802241 | 6.160024e-49 | -8.615850e-47 |
| Msa0509390 | Msa1178610 | 0.818703 | 1.706686e-52 | -8.615850e-47 |
| Msa0515010 | Msa1178610 | 0.816169 | 6.350519e-52 | -8.615850e-47 |
| Msa0517330 | Msa1178610 | 0.801968 | 7.007861e-49 | -8.615850e-47 |
| Msa0517490 | Msa1178610 | 0.815303 | 9.904508e-52 | -8.615850e-47 |
| Msa0519220 | Msa1178610 | 0.820105 | 8.178813e-53 | -8.615850e-47 |
| Msa0521880 | Msa1178610 | 0.813816 | 2.113313e-51 | -8.615850e-47 |
| Msa0526890 | Msa1178610 | 0.811533 | 6.674495e-51 | -8.615850e-47 |
| Msa0535030 | Msa1178610 | 0.810737 | 9.935616e-51 | -8.615850e-47 |
| Msa0535060 | Msa1178610 | 0.811147 | 8.095334e-51 | -8.615850e-47 |
| Msa0562440 | Msa1178610 | 0.816929 | 4.291671e-52 | -8.615850e-47 |
| Msa0591770 | Msa1178610 | 0.806817 | 6.842142e-50 | -8.615850e-47 |
| Msa0593650 | Msa1178610 | 0.804358 | 2.244910e-49 | -8.615850e-47 |
| Msa0844240 | Msa1178610 | 0.807905 | 4.022507e-50 | -8.615850e-47 |
| Msa0850960 | Msa1178610 | 0.815174 | 1.058305e-51 | -8.615850e-47 |
| Msa0855430 | Msa1178610 | 0.831133 | 1.983879e-55 | -8.615850e-47 |
| Msa0863370 | Msa1178610 | 0.800494 | 1.403607e-48 | -8.615850e-47 |
| Msa0863870 | Msa1178610 | 0.811447 | 6.968005e-51 | -8.615850e-47 |
| Msa0870620 | Msa1178610 | 0.800246 | 1.576681e-48 | -8.615850e-47 |
| Msa0874500 | Msa1178610 | 0.808718 | 2.698909e-50 | -8.615850e-47 |
| Msa0874570 | Msa1178610 | 0.821977 | 3.030255e-53 | -8.615850e-47 |
| Msa0881020 | Msa1178610 | 0.800271 | 1.558822e-48 | -8.615850e-47 |
| Msa0882510 | Msa1178610 | 0.805574 | 1.250210e-49 | -8.615850e-47 |
| Msa0908170 | Msa1178610 | 0.805867 | 1.084884e-49 | -8.615850e-47 |
| Msa0909000 | Msa1178610 | -0.804191 | 2.431462e-49 | -8.615850e-47 |
| Msa0910980 | Msa1178610 | -0.806471 | 8.094886e-50 | -8.615850e-47 |
| Msa0927670 | Msa1178610 | 0.800259 | 1.567376e-48 | -8.615850e-47 |
| Msa0933440 | Msa1178610 | 0.802925 | 4.452164e-49 | -8.615850e-47 |
| Msa0944190 | Msa1178610 | 0.808664 | 2.771492e-50 | -8.615850e-47 |
| Msa0976250 | Msa1178610 | 0.822915 | 1.834552e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178610 | MtrunA17_Chr8g0343561 | 98.661 | 224 | 3 | 0 | 1 | 224 | 1 | 224 | 9.48e-161 | 443 |
| Msa1178610 | MtrunA17_Chr2g0300321 | 86.607 | 224 | 29 | 1 | 1 | 224 | 1 | 223 | 6.26e-120 | 340 |
| Msa1178610 | MtrunA17_Chr1g0183621 | 41.553 | 219 | 117 | 1 | 4 | 222 | 7 | 214 | 4.72e-52 | 167 |
| Msa1178610 | MtrunA17_Chr2g0303251 | 40.179 | 224 | 121 | 3 | 4 | 224 | 3 | 216 | 9.00e-45 | 149 |
| Msa1178610 | MtrunA17_Chr7g0261511 | 46.119 | 219 | 107 | 2 | 4 | 222 | 3 | 210 | 5.49e-43 | 144 |
| Msa1178610 | MtrunA17_Chr4g0028231 | 27.602 | 221 | 157 | 3 | 4 | 222 | 7 | 226 | 1.43e-18 | 80.9 |
| Msa1178610 | MtrunA17_Chr2g0330571 | 25.294 | 170 | 115 | 2 | 53 | 222 | 45 | 202 | 3.37e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178610 | AT2G06530.1 | 88.444 | 225 | 24 | 2 | 1 | 224 | 2 | 225 | 4.15e-127 | 358 |
| Msa1178610 | AT2G06530.2 | 89.268 | 205 | 20 | 2 | 21 | 224 | 1 | 204 | 4.03e-114 | 325 |
| Msa1178610 | AT1G03950.1 | 43.379 | 219 | 113 | 3 | 4 | 222 | 3 | 210 | 3.38e-54 | 173 |
| Msa1178610 | AT5G44560.1 | 39.367 | 221 | 133 | 1 | 4 | 224 | 3 | 222 | 7.12e-48 | 157 |
| Msa1178610 | AT5G44560.4 | 42.045 | 176 | 102 | 0 | 4 | 179 | 3 | 178 | 4.45e-45 | 149 |
| Msa1178610 | AT5G44560.2 | 40.000 | 200 | 119 | 1 | 25 | 224 | 4 | 202 | 7.15e-43 | 144 |
| Msa1178610 | AT5G44560.3 | 37.857 | 140 | 86 | 1 | 4 | 142 | 3 | 142 | 1.39e-26 | 100 |
| Msa1178610 | AT5G22950.1 | 28.704 | 216 | 149 | 3 | 11 | 222 | 14 | 228 | 2.62e-17 | 78.2 |
| Msa1178610 | AT1G17730.1 | 25.000 | 196 | 133 | 2 | 27 | 222 | 19 | 200 | 8.57e-13 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAGATTATAACAGAAAA+TGG | 0.267692 | 8_1:-11449708 | None:intergenic |
| ATGTGATGCGTAGGAATATT+TGG | 0.269014 | 8_1:+11449306 | Msa1178610:exon |
| GGGTGTTGCTTTGAGAATTC+AGG | 0.273393 | 8_1:+11448030 | Msa1178610:CDS |
| AGCGCTATTGCAAACAAAAT+TGG | 0.291580 | 8_1:+11446846 | Msa1178610:five_prime_UTR |
| GCTGATCTGACCGGTTTGTT+AGG | 0.304188 | 8_1:+11449628 | Msa1178610:three_prime_UTR |
| CAAGCTTAAATCACAACTTC+AGG | 0.310848 | 8_1:+11448009 | Msa1178610:CDS |
| AAATACCATTTGTCCTTGTT+TGG | 0.313748 | 8_1:-11447267 | None:intergenic |
| TACACAGATCTTATTAGAAT+TGG | 0.324529 | 8_1:+11449597 | Msa1178610:intron |
| CTGCGCCAGCAGCAAAGAAC+AGG | 0.338116 | 8_1:+11449202 | Msa1178610:CDS |
| GATTAATTATAACCTTAGTT+TGG | 0.338273 | 8_1:+11446788 | Msa1178610:five_prime_UTR |
| TGCTGCTGGCGCAGCGGTTG+AGG | 0.345574 | 8_1:-11449193 | None:intergenic |
| CTGATCTGACCGGTTTGTTA+GGG | 0.356969 | 8_1:+11449629 | Msa1178610:three_prime_UTR |
| TTAGGGTGCTGTGAGGGTTA+TGG | 0.358019 | 8_1:+11447943 | Msa1178610:intron |
| ATCATCATTGCCCGTTGGTT+CGG | 0.375176 | 8_1:-11449235 | None:intergenic |
| GCAACCCTGTTCTTTGCTGC+TGG | 0.393522 | 8_1:-11449207 | None:intergenic |
| GGAACTTGTTTCTGAGGTAA+TGG | 0.405606 | 8_1:+11448643 | Msa1178610:CDS |
| GAACTTGTTTCTGAGGTAAT+GGG | 0.408793 | 8_1:+11448644 | Msa1178610:CDS |
| AAGCAATGGGTCAAATGAAT+AGG | 0.409703 | 8_1:+11448558 | Msa1178610:CDS |
| TGCATTATCTTCTGTAAAGA+AGG | 0.410358 | 8_1:-11448593 | None:intergenic |
| GCAATTGATGATGCTTTAGA+AGG | 0.423361 | 8_1:+11448671 | Msa1178610:CDS |
| CTGAAATCTACTCAAGCAAT+GGG | 0.427818 | 8_1:+11448512 | Msa1178610:CDS |
| AGCAAAGAACAGGGTTGCTC+AGG | 0.453290 | 8_1:+11449212 | Msa1178610:CDS |
| GTTGCTCAGGCCGAACCAAC+GGG | 0.456495 | 8_1:+11449225 | Msa1178610:CDS |
| AGGGGAGGAAACGTAGATAT+AGG | 0.458061 | 8_1:+11449648 | Msa1178610:three_prime_UTR |
| CGTTTCCTCCCCTAACAAAC+CGG | 0.475871 | 8_1:-11449638 | None:intergenic |
| GAATGCCAAACAAGGACAAA+TGG | 0.480489 | 8_1:+11447262 | Msa1178610:CDS |
| AAAGGAGTTACTAAAGCAAT+GGG | 0.498174 | 8_1:+11448545 | Msa1178610:CDS |
| ATGAACTATAATCCAAACTA+AGG | 0.500638 | 8_1:-11446800 | None:intergenic |
| TGGAATAGATGATGATCTAC+AGG | 0.501443 | 8_1:+11449260 | Msa1178610:CDS |
| GCAGAGGGTATGGTATGGTT+AGG | 0.502559 | 8_1:+11449670 | Msa1178610:three_prime_UTR |
| GCAGCGGTTGAGGTTGATGC+AGG | 0.505074 | 8_1:-11449183 | None:intergenic |
| AGTCTATTAGAGAAATTGAA+AGG | 0.508512 | 8_1:+11447186 | Msa1178610:CDS |
| GGAAACGTAGATATAGGCAG+AGG | 0.509205 | 8_1:+11449654 | Msa1178610:three_prime_UTR |
| TGAAAGGCAGAATGAGAAGA+TGG | 0.511267 | 8_1:+11448622 | Msa1178610:CDS |
| AGATAATGCAAGAGTTTGAA+AGG | 0.512294 | 8_1:+11448606 | Msa1178610:CDS |
| AAGCTTAAATCACAACTTCA+GGG | 0.512790 | 8_1:+11448010 | Msa1178610:CDS |
| GTTACATTTGCTGATCTGAC+CGG | 0.513466 | 8_1:+11449619 | Msa1178610:three_prime_UTR |
| GAAAGGAGTTACTAAAGCAA+TGG | 0.516989 | 8_1:+11448544 | Msa1178610:CDS |
| TTTAGAAGGTGATGAAGAAG+AGG | 0.518323 | 8_1:+11448685 | Msa1178610:CDS |
| GAACCAACGGGCAATGATGA+TGG | 0.518414 | 8_1:+11449237 | Msa1178610:CDS |
| GGTTGCTCAGGCCGAACCAA+CGG | 0.520072 | 8_1:+11449224 | Msa1178610:CDS |
| TGCTGTGAGGGTTATGGCCA+AGG | 0.523944 | 8_1:+11447949 | Msa1178610:CDS |
| GCGAGTTCTGATAAGATCCT+TGG | 0.525743 | 8_1:-11447966 | None:intergenic |
| GTCTATTAGAGAAATTGAAA+GGG | 0.532893 | 8_1:+11447187 | Msa1178610:CDS |
| CCACCATCATCATTGCCCGT+TGG | 0.548023 | 8_1:-11449240 | None:intergenic |
| GTAGATATAGGCAGAGGGTA+TGG | 0.552002 | 8_1:+11449660 | Msa1178610:three_prime_UTR |
| AGGCTAGGTTAGATAACCTA+AGG | 0.562667 | 8_1:+11449280 | Msa1178610:CDS |
| AATTTGTTAGGGTGCTGTGA+GGG | 0.568995 | 8_1:+11447937 | Msa1178610:intron |
| AATCAAGTTCTTGATGAGAT+CGG | 0.569717 | 8_1:+11448728 | Msa1178610:CDS |
| CTAAGGAAAATGTGATGCGT+AGG | 0.571602 | 8_1:+11449297 | Msa1178610:exon |
| GAAGATGGAACTTGTTTCTG+AGG | 0.576457 | 8_1:+11448637 | Msa1178610:CDS |
| CAATTTGTTAGGGTGCTGTG+AGG | 0.590012 | 8_1:+11447936 | Msa1178610:intron |
| GTTCTTTGCTGCTGGCGCAG+CGG | 0.591986 | 8_1:-11449199 | None:intergenic |
| TGATCTGACCGGTTTGTTAG+GGG | 0.602062 | 8_1:+11449630 | Msa1178610:three_prime_UTR |
| GGCAGTAGAAAGACTCCCGC+AGG | 0.602338 | 8_1:+11446920 | Msa1178610:CDS |
| TGCGCCAGCAGCAAAGAACA+GGG | 0.604491 | 8_1:+11449203 | Msa1178610:CDS |
| GGAATTGCACAGTAGAGCAT+AGG | 0.604816 | 8_1:+11446867 | Msa1178610:five_prime_UTR |
| TATAGGCAGAGGGTATGGTA+TGG | 0.609581 | 8_1:+11449665 | Msa1178610:three_prime_UTR |
| ACTGAAATCTACTCAAGCAA+TGG | 0.611599 | 8_1:+11448511 | Msa1178610:CDS |
| GAAATCTACTCAAGCAATGG+GGG | 0.624835 | 8_1:+11448514 | Msa1178610:CDS |
| ATTAAGAAGAATGCCAAACA+AGG | 0.625704 | 8_1:+11447254 | Msa1178610:CDS |
| TAGATGATGATCTACAGGCT+AGG | 0.626372 | 8_1:+11449265 | Msa1178610:CDS |
| CCAACGGGCAATGATGATGG+TGG | 0.626681 | 8_1:+11449240 | Msa1178610:CDS |
| GAAACGTAGATATAGGCAGA+GGG | 0.628744 | 8_1:+11449655 | Msa1178610:three_prime_UTR |
| GGTATGGTATGGTTAGGTGA+AGG | 0.634683 | 8_1:+11449676 | Msa1178610:three_prime_UTR |
| TCTGACCGGTTTGTTAGGGG+AGG | 0.635845 | 8_1:+11449633 | Msa1178610:three_prime_UTR |
| GAAATTGAAAGGGAAAGACA+AGG | 0.636711 | 8_1:+11447197 | Msa1178610:CDS |
| CGGAATCGATATCAACTCTG+AGG | 0.660467 | 8_1:+11448748 | Msa1178610:CDS |
| TGAAATCTACTCAAGCAATG+GGG | 0.673116 | 8_1:+11448513 | Msa1178610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAATAATTTAATAC+TGG | + | chr8_1:11447026-11447045 | Msa1178610:intron | 10.0% |
| !! | AAAAACAATAATTTAATACT+GGG | + | chr8_1:11447027-11447046 | Msa1178610:intron | 10.0% |
| !!! | AAAATTGATAATTACTTTTA+GGG | + | chr8_1:11447746-11447765 | Msa1178610:intron | 10.0% |
| !! | TTCCTTAAATAAAAAACATT+AGG | + | chr8_1:11446760-11446779 | Msa1178610:five_prime_UTR | 15.0% |
| !!! | AATTTTCACTTTTAATCAAA+TGG | + | chr8_1:11446953-11446972 | Msa1178610:intron | 15.0% |
| !!! | ATTTTCACTTTTAATCAAAT+GGG | + | chr8_1:11446954-11446973 | Msa1178610:intron | 15.0% |
| !!! | CAAAATTGATAATTACTTTT+AGG | + | chr8_1:11447745-11447764 | Msa1178610:intron | 15.0% |
| !! | TTTGTAATTGATATATATCA+TGG | - | chr8_1:11449465-11449484 | None:intergenic | 15.0% |
| !!! | AAATGGGTAATTTTTAACTT+AGG | + | chr8_1:11446734-11446753 | Msa1178610:five_prime_UTR | 20.0% |
| !!! | CACCTAATGTTTTTTATTTA+AGG | - | chr8_1:11446765-11446784 | None:intergenic | 20.0% |
| !! | CTTAAATAAAAAACATTAGG+TGG | + | chr8_1:11446763-11446782 | Msa1178610:five_prime_UTR | 20.0% |
| !! | GATTAATTATAACCTTAGTT+TGG | + | chr8_1:11446788-11446807 | Msa1178610:five_prime_UTR | 20.0% |
| !!! | TTTTATTTGCTTTTCTAGTT+TGG | + | chr8_1:11447055-11447074 | Msa1178610:intron | 20.0% |
| !!! | AATTGAGTTTTTTGGTTAAT+GGG | + | chr8_1:11447100-11447119 | Msa1178610:intron | 20.0% |
| !!! | TTAGTTGTATATTTTGTTGT+AGG | + | chr8_1:11447344-11447363 | Msa1178610:intron | 20.0% |
| !! | CTAAAAACAAAAAACACTAA+TGG | + | chr8_1:11447563-11447582 | Msa1178610:intron | 20.0% |
| !! | ACATTCAAATTAAACCAAAA+CGG | - | chr8_1:11447629-11447648 | None:intergenic | 20.0% |
| !!! | TGTTTTAGTTTCATAGTTAA+CGG | + | chr8_1:11447646-11447665 | Msa1178610:intron | 20.0% |
| !!! | ATTGTGGTTTTAATATAGTA+GGG | + | chr8_1:11447849-11447868 | Msa1178610:intron | 20.0% |
| !!! | AGTTTTGTTTCAATTTGTTA+GGG | + | chr8_1:11447926-11447945 | Msa1178610:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | - | chr8_1:11448829-11448848 | None:intergenic | 20.0% |
| !! | AATAAGCTAAATACATCTTA+AGG | + | chr8_1:11448964-11448983 | Msa1178610:intron | 20.0% |
| !!! | ATATACGATCATTATTTTCA+TGG | - | chr8_1:11449349-11449368 | None:intergenic | 20.0% |
| !!! | TTTAGTCACATTTTATTTTC+AGG | + | chr8_1:11449384-11449403 | Msa1178610:three_prime_UTR | 20.0% |
| ! | ATGAACTATAATCCAAACTA+AGG | - | chr8_1:11446803-11446822 | None:intergenic | 25.0% |
| !! | TTCAATATGAGTTTTCTGTT+CGG | + | chr8_1:11446899-11446918 | Msa1178610:exon | 25.0% |
| ! | AAAATTTGAAGAATTACCTG+CGG | - | chr8_1:11446939-11446958 | None:intergenic | 25.0% |
| ! | GAAAAATTGTGACTTTGATT+AGG | + | chr8_1:11447077-11447096 | Msa1178610:intron | 25.0% |
| !!! | TGATTAGGAATTGAGTTTTT+TGG | + | chr8_1:11447092-11447111 | Msa1178610:intron | 25.0% |
| !!! | GAATTGAGTTTTTTGGTTAA+TGG | + | chr8_1:11447099-11447118 | Msa1178610:intron | 25.0% |
| ! | AGTCTATTAGAGAAATTGAA+AGG | + | chr8_1:11447186-11447205 | Msa1178610:CDS | 25.0% |
| ! | GTCTATTAGAGAAATTGAAA+GGG | + | chr8_1:11447187-11447206 | Msa1178610:CDS | 25.0% |
| ! | AACTAAGTGCAATAGAAAAA+TGG | - | chr8_1:11447330-11447349 | None:intergenic | 25.0% |
| ! | CAAAAAACACAATAATTGCA+GGG | - | chr8_1:11447387-11447406 | None:intergenic | 25.0% |
| !! | CAATAGTTTTTGAATTTGCA+AGG | - | chr8_1:11447447-11447466 | None:intergenic | 25.0% |
| ! | AAACAAAAAACACTAATGGT+AGG | + | chr8_1:11447567-11447586 | Msa1178610:intron | 25.0% |
| ! | AACAAAAAACACTAATGGTA+GGG | + | chr8_1:11447568-11447587 | Msa1178610:intron | 25.0% |
| !! | TAACGGTGTTAATTGTTATT+AGG | + | chr8_1:11447663-11447682 | Msa1178610:intron | 25.0% |
| !! | AACGGTGTTAATTGTTATTA+GGG | + | chr8_1:11447664-11447683 | Msa1178610:intron | 25.0% |
| !!! | TGAGAAGTTTATTGCTTTTA+AGG | + | chr8_1:11447826-11447845 | Msa1178610:intron | 25.0% |
| !!! | TTTATTGCTTTTAAGGATTG+TGG | + | chr8_1:11447833-11447852 | Msa1178610:intron | 25.0% |
| !!! | GATTGTGGTTTTAATATAGT+AGG | + | chr8_1:11447848-11447867 | Msa1178610:intron | 25.0% |
| !!! | GAGTTTTGTTTCAATTTGTT+AGG | + | chr8_1:11447925-11447944 | Msa1178610:intron | 25.0% |
| !! | TGTAAAACTTTTCAATCTGA+TGG | - | chr8_1:11447991-11448010 | None:intergenic | 25.0% |
| !!! | AATAATAGACTAGTCCTTTT+TGG | + | chr8_1:11448812-11448831 | Msa1178610:intron | 25.0% |
| ! | ACTTATTTGTGTTTATCTAC+TGG | - | chr8_1:11449046-11449065 | None:intergenic | 25.0% |
| ! | ACAAATAAGTCAATTCAAAC+AGG | + | chr8_1:11449056-11449075 | Msa1178610:intron | 25.0% |
| ! | AGAAGCTGTAACAATAATAA+TGG | + | chr8_1:11449113-11449132 | Msa1178610:intron | 25.0% |
| !!! | TCACATTTTATTTTCAGGTT+TGG | + | chr8_1:11449389-11449408 | Msa1178610:intron | 25.0% |
| ! | TACACAGATCTTATTAGAAT+TGG | + | chr8_1:11449597-11449616 | Msa1178610:intron | 25.0% |
| AAATTTGAAGAATTACCTGC+GGG | - | chr8_1:11446938-11446957 | None:intergenic | 30.0% | |
| !! | TTTTGGTTAATGGGTAGTTT+TGG | + | chr8_1:11447109-11447128 | Msa1178610:intron | 30.0% |
| ! | TTTTGTTAACAGAGCTTTTG+AGG | + | chr8_1:11447141-11447160 | Msa1178610:intron | 30.0% |
| ! | TTTGTTAACAGAGCTTTTGA+GGG | + | chr8_1:11447142-11447161 | Msa1178610:intron | 30.0% |
| !! | AGCTTTTGAGGGAAAATAAA+AGG | + | chr8_1:11447153-11447172 | Msa1178610:CDS | 30.0% |
| ATTAAGAAGAATGCCAAACA+AGG | + | chr8_1:11447254-11447273 | Msa1178610:CDS | 30.0% | |
| AAATACCATTTGTCCTTGTT+TGG | - | chr8_1:11447270-11447289 | None:intergenic | 30.0% | |
| CCAAAAAACACAATAATTGC+AGG | - | chr8_1:11447388-11447407 | None:intergenic | 30.0% | |
| !!! | CCTGCAATTATTGTGTTTTT+TGG | + | chr8_1:11447385-11447404 | Msa1178610:intron | 30.0% |
| CTCAAACAAAAGAACTTACA+CGG | - | chr8_1:11447418-11447437 | None:intergenic | 30.0% | |
| !!! | TGTTTTAACTACGTCATATG+CGG | + | chr8_1:11447465-11447484 | Msa1178610:intron | 30.0% |
| GTCTGTAACATTACTTAATC+AGG | - | chr8_1:11447513-11447532 | None:intergenic | 30.0% | |
| ! | TCGTTGTATTATATCCGTTT+TGG | + | chr8_1:11447612-11447631 | Msa1178610:intron | 30.0% |
| ! | TGTAAGTAACTGTGTTGTTA+AGG | + | chr8_1:11447693-11447712 | Msa1178610:intron | 30.0% |
| ! | GTAAGTAACTGTGTTGTTAA+GGG | + | chr8_1:11447694-11447713 | Msa1178610:intron | 30.0% |
| GAACAGGTATGTAATATGTT+TGG | + | chr8_1:11447883-11447902 | Msa1178610:intron | 30.0% | |
| GGTATGTAATATGTTTGGTT+TGG | + | chr8_1:11447888-11447907 | Msa1178610:intron | 30.0% | |
| AAGCTTAAATCACAACTTCA+GGG | + | chr8_1:11448010-11448029 | Msa1178610:CDS | 30.0% | |
| AACTTATCTGCTAAAATCCT+AGG | - | chr8_1:11448119-11448138 | None:intergenic | 30.0% | |
| TTTCATGCTCATTCATACTA+TGG | + | chr8_1:11448377-11448396 | Msa1178610:intron | 30.0% | |
| AAAGGAGTTACTAAAGCAAT+GGG | + | chr8_1:11448545-11448564 | Msa1178610:CDS | 30.0% | |
| TGCATTATCTTCTGTAAAGA+AGG | - | chr8_1:11448596-11448615 | None:intergenic | 30.0% | |
| AGATAATGCAAGAGTTTGAA+AGG | + | chr8_1:11448606-11448625 | Msa1178610:CDS | 30.0% | |
| AATCAAGTTCTTGATGAGAT+CGG | + | chr8_1:11448728-11448747 | Msa1178610:CDS | 30.0% | |
| AATGTTTGATGCGATAAAAG+AGG | - | chr8_1:11449518-11449537 | None:intergenic | 30.0% | |
| AGCGCTATTGCAAACAAAAT+TGG | + | chr8_1:11446846-11446865 | Msa1178610:five_prime_UTR | 35.0% | |
| GAAATTGAAAGGGAAAGACA+AGG | + | chr8_1:11447197-11447216 | Msa1178610:CDS | 35.0% | |
| CCACTAGTAATGAAAGAAGA+AGG | - | chr8_1:11447302-11447321 | None:intergenic | 35.0% | |
| CCTTCTTCTTTCATTACTAG+TGG | + | chr8_1:11447299-11447318 | Msa1178610:intron | 35.0% | |
| GCTACATGGCGTATTATATT+GGG | - | chr8_1:11447491-11447510 | None:intergenic | 35.0% | |
| CATTACTTAATCAGGCTACA+TGG | - | chr8_1:11447505-11447524 | None:intergenic | 35.0% | |
| !! | TAGGGTGTTGTTATTTGAAC+AGG | + | chr8_1:11447867-11447886 | Msa1178610:intron | 35.0% |
| CAAGCTTAAATCACAACTTC+AGG | + | chr8_1:11448009-11448028 | Msa1178610:CDS | 35.0% | |
| !! | GGATTTTAGCAGATAAGTTG+AGG | + | chr8_1:11448120-11448139 | Msa1178610:intron | 35.0% |
| ! | TGAGCATGAAAGTATACACA+AGG | - | chr8_1:11448368-11448387 | None:intergenic | 35.0% |
| TGTCTACAATTAATCTCAGG+AGG | - | chr8_1:11448492-11448511 | None:intergenic | 35.0% | |
| CAGTGTCTACAATTAATCTC+AGG | - | chr8_1:11448495-11448514 | None:intergenic | 35.0% | |
| ACTGAAATCTACTCAAGCAA+TGG | + | chr8_1:11448511-11448530 | Msa1178610:CDS | 35.0% | |
| CTGAAATCTACTCAAGCAAT+GGG | + | chr8_1:11448512-11448531 | Msa1178610:CDS | 35.0% | |
| TGAAATCTACTCAAGCAATG+GGG | + | chr8_1:11448513-11448532 | Msa1178610:CDS | 35.0% | |
| GAAAGGAGTTACTAAAGCAA+TGG | + | chr8_1:11448544-11448563 | Msa1178610:CDS | 35.0% | |
| AAGCAATGGGTCAAATGAAT+AGG | + | chr8_1:11448558-11448577 | Msa1178610:CDS | 35.0% | |
| !! | GAACTTGTTTCTGAGGTAAT+GGG | + | chr8_1:11448644-11448663 | Msa1178610:CDS | 35.0% |
| !! | GCAATTGATGATGCTTTAGA+AGG | + | chr8_1:11448671-11448690 | Msa1178610:CDS | 35.0% |
| TTTAGAAGGTGATGAAGAAG+AGG | + | chr8_1:11448685-11448704 | Msa1178610:CDS | 35.0% | |
| !! | CTTATTTTCATAAGCTCGCT+AGG | - | chr8_1:11448950-11448969 | None:intergenic | 35.0% |
| TACAGCTTCTTTCTAAGCTA+GGG | - | chr8_1:11449103-11449122 | None:intergenic | 35.0% | |
| TTACAGCTTCTTTCTAAGCT+AGG | - | chr8_1:11449104-11449123 | None:intergenic | 35.0% | |
| TGGAATAGATGATGATCTAC+AGG | + | chr8_1:11449260-11449279 | Msa1178610:CDS | 35.0% | |
| ATGTGATGCGTAGGAATATT+TGG | + | chr8_1:11449306-11449325 | Msa1178610:exon | 35.0% | |
| GAATGCCAAACAAGGACAAA+TGG | + | chr8_1:11447262-11447281 | Msa1178610:CDS | 40.0% | |
| GGCTACATGGCGTATTATAT+TGG | - | chr8_1:11447492-11447511 | None:intergenic | 40.0% | |
| !! | AATTTGTTAGGGTGCTGTGA+GGG | + | chr8_1:11447937-11447956 | Msa1178610:intron | 40.0% |
| TTGAAGCTTATTGTGCTCCT+AGG | + | chr8_1:11448099-11448118 | Msa1178610:intron | 40.0% | |
| CTCGTTATGTATCTGCAATG+AGG | - | chr8_1:11448345-11448364 | None:intergenic | 40.0% | |
| GAAATCTACTCAAGCAATGG+GGG | + | chr8_1:11448514-11448533 | Msa1178610:CDS | 40.0% | |
| TGAAAGGCAGAATGAGAAGA+TGG | + | chr8_1:11448622-11448641 | Msa1178610:CDS | 40.0% | |
| !! | GAAGATGGAACTTGTTTCTG+AGG | + | chr8_1:11448637-11448656 | Msa1178610:CDS | 40.0% |
| !! | GGAACTTGTTTCTGAGGTAA+TGG | + | chr8_1:11448643-11448662 | Msa1178610:CDS | 40.0% |
| ACAGCTTCTTTCTAAGCTAG+GGG | - | chr8_1:11449102-11449121 | None:intergenic | 40.0% | |
| TAGATGATGATCTACAGGCT+AGG | + | chr8_1:11449265-11449284 | Msa1178610:CDS | 40.0% | |
| AGGCTAGGTTAGATAACCTA+AGG | + | chr8_1:11449280-11449299 | Msa1178610:CDS | 40.0% | |
| ! | CTACGCATCACATTTTCCTT+AGG | - | chr8_1:11449299-11449318 | None:intergenic | 40.0% |
| CTAAGGAAAATGTGATGCGT+AGG | + | chr8_1:11449297-11449316 | Msa1178610:exon | 40.0% | |
| ! | GTTACATTTGCTGATCTGAC+CGG | + | chr8_1:11449619-11449638 | Msa1178610:three_prime_UTR | 40.0% |
| GAAACGTAGATATAGGCAGA+GGG | + | chr8_1:11449655-11449674 | Msa1178610:three_prime_UTR | 40.0% | |
| GGAATTGCACAGTAGAGCAT+AGG | + | chr8_1:11446867-11446886 | Msa1178610:five_prime_UTR | 45.0% | |
| !! | CAATTTGTTAGGGTGCTGTG+AGG | + | chr8_1:11447936-11447955 | Msa1178610:intron | 45.0% |
| ! | GCGAGTTCTGATAAGATCCT+TGG | - | chr8_1:11447969-11447988 | None:intergenic | 45.0% |
| !! | GGGTGTTGCTTTGAGAATTC+AGG | + | chr8_1:11448030-11448049 | Msa1178610:CDS | 45.0% |
| TGACAAGTATCCGACATGTG+TGG | + | chr8_1:11448213-11448232 | Msa1178610:intron | 45.0% | |
| GACAAGTATCCGACATGTGT+GGG | + | chr8_1:11448214-11448233 | Msa1178610:intron | 45.0% | |
| CGGAATCGATATCAACTCTG+AGG | + | chr8_1:11448748-11448767 | Msa1178610:CDS | 45.0% | |
| ! | ATCATCATTGCCCGTTGGTT+CGG | - | chr8_1:11449238-11449257 | None:intergenic | 45.0% |
| !! | CTGATCTGACCGGTTTGTTA+GGG | + | chr8_1:11449629-11449648 | Msa1178610:three_prime_UTR | 45.0% |
| !! | TGATCTGACCGGTTTGTTAG+GGG | + | chr8_1:11449630-11449649 | Msa1178610:three_prime_UTR | 45.0% |
| AGGGGAGGAAACGTAGATAT+AGG | + | chr8_1:11449648-11449667 | Msa1178610:three_prime_UTR | 45.0% | |
| GGAAACGTAGATATAGGCAG+AGG | + | chr8_1:11449654-11449673 | Msa1178610:three_prime_UTR | 45.0% | |
| GTAGATATAGGCAGAGGGTA+TGG | + | chr8_1:11449660-11449679 | Msa1178610:three_prime_UTR | 45.0% | |
| ! | TATAGGCAGAGGGTATGGTA+TGG | + | chr8_1:11449665-11449684 | Msa1178610:three_prime_UTR | 45.0% |
| GGTATGGTATGGTTAGGTGA+AGG | + | chr8_1:11449676-11449695 | Msa1178610:three_prime_UTR | 45.0% | |
| !! | TTAAAAATTATAAATTTAAC+AGG | - | chr8_1:11448429-11448448 | None:intergenic | 5.0% |
| !! | TTAGGGTGCTGTGAGGGTTA+TGG | + | chr8_1:11447943-11447962 | Msa1178610:intron | 50.0% |
| TATCCGACATGTGTGGGCAT+TGG | + | chr8_1:11448220-11448239 | Msa1178610:intron | 50.0% | |
| ATCCGACATGTGTGGGCATT+GGG | + | chr8_1:11448221-11448240 | Msa1178610:intron | 50.0% | |
| ! | CGATGTGTAAGTGTCGTGTC+CGG | + | chr8_1:11448299-11448318 | Msa1178610:intron | 50.0% |
| TCCGGTATCCATGTCTCTGT+CGG | + | chr8_1:11448317-11448336 | Msa1178610:intron | 50.0% | |
| ACCGACAGAGACATGGATAC+CGG | - | chr8_1:11448321-11448340 | None:intergenic | 50.0% | |
| AGCAAAGAACAGGGTTGCTC+AGG | + | chr8_1:11449212-11449231 | Msa1178610:CDS | 50.0% | |
| GAACCAACGGGCAATGATGA+TGG | + | chr8_1:11449237-11449256 | Msa1178610:CDS | 50.0% | |
| !! | GCTGATCTGACCGGTTTGTT+AGG | + | chr8_1:11449628-11449647 | Msa1178610:three_prime_UTR | 50.0% |
| CGTTTCCTCCCCTAACAAAC+CGG | - | chr8_1:11449641-11449660 | None:intergenic | 50.0% | |
| ! | GCAGAGGGTATGGTATGGTT+AGG | + | chr8_1:11449670-11449689 | Msa1178610:three_prime_UTR | 50.0% |
| TGCTGTGAGGGTTATGGCCA+AGG | + | chr8_1:11447949-11447968 | Msa1178610:CDS | 55.0% | |
| TGCCCAATGCCCACACATGT+CGG | - | chr8_1:11448226-11448245 | None:intergenic | 55.0% | |
| !! | ATGAGGCACCGACAGAGACA+TGG | - | chr8_1:11448328-11448347 | None:intergenic | 55.0% |
| GCAATGGGGGACGCTATGAA+AGG | + | chr8_1:11448527-11448546 | Msa1178610:CDS | 55.0% | |
| TGCGCCAGCAGCAAAGAACA+GGG | + | chr8_1:11449203-11449222 | Msa1178610:CDS | 55.0% | |
| GCAACCCTGTTCTTTGCTGC+TGG | - | chr8_1:11449210-11449229 | None:intergenic | 55.0% | |
| CCACCATCATCATTGCCCGT+TGG | - | chr8_1:11449243-11449262 | None:intergenic | 55.0% | |
| !! | CCAACGGGCAATGATGATGG+TGG | + | chr8_1:11449240-11449259 | Msa1178610:CDS | 55.0% |
| !! | TCTGACCGGTTTGTTAGGGG+AGG | + | chr8_1:11449633-11449652 | Msa1178610:three_prime_UTR | 55.0% |
| GGCAGTAGAAAGACTCCCGC+AGG | + | chr8_1:11446920-11446939 | Msa1178610:CDS | 60.0% | |
| !! | GCAGCGGTTGAGGTTGATGC+AGG | - | chr8_1:11449186-11449205 | None:intergenic | 60.0% |
| GTTCTTTGCTGCTGGCGCAG+CGG | - | chr8_1:11449202-11449221 | None:intergenic | 60.0% | |
| CTGCGCCAGCAGCAAAGAAC+AGG | + | chr8_1:11449202-11449221 | Msa1178610:CDS | 60.0% | |
| GGTTGCTCAGGCCGAACCAA+CGG | + | chr8_1:11449224-11449243 | Msa1178610:CDS | 60.0% | |
| GTTGCTCAGGCCGAACCAAC+GGG | + | chr8_1:11449225-11449244 | Msa1178610:CDS | 60.0% | |
| TGCTGCTGGCGCAGCGGTTG+AGG | - | chr8_1:11449196-11449215 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 11446720 | 11449726 | 11446720 | ID=Msa1178610;Name=Msa1178610 |
| chr8_1 | mRNA | 11446720 | 11449726 | 11446720 | ID=Msa1178610-mRNA-1;Parent=Msa1178610;Name=Msa1178610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=185|1|1|1|0.8|0.66|6|217|224 |
| chr8_1 | exon | 11446720 | 11446941 | 11446720 | ID=Msa1178610-mRNA-1:exon:4047;Parent=Msa1178610-mRNA-1 |
| chr8_1 | exon | 11447153 | 11447283 | 11447153 | ID=Msa1178610-mRNA-1:exon:4048;Parent=Msa1178610-mRNA-1 |
| chr8_1 | exon | 11447947 | 11448051 | 11447947 | ID=Msa1178610-mRNA-1:exon:4049;Parent=Msa1178610-mRNA-1 |
| chr8_1 | exon | 11448509 | 11448769 | 11448509 | ID=Msa1178610-mRNA-1:exon:4050;Parent=Msa1178610-mRNA-1 |
| chr8_1 | exon | 11449171 | 11449405 | 11449171 | ID=Msa1178610-mRNA-1:exon:4051;Parent=Msa1178610-mRNA-1 |
| chr8_1 | exon | 11449604 | 11449726 | 11449604 | ID=Msa1178610-mRNA-1:exon:4052;Parent=Msa1178610-mRNA-1 |
| chr8_1 | five_prime_UTR | 11446720 | 11446904 | 11446720 | ID=Msa1178610-mRNA-1:five_prime_utr;Parent=Msa1178610-mRNA-1 |
| chr8_1 | CDS | 11446905 | 11446941 | 11446905 | ID=Msa1178610-mRNA-1:cds;Parent=Msa1178610-mRNA-1 |
| chr8_1 | CDS | 11447153 | 11447283 | 11447153 | ID=Msa1178610-mRNA-1:cds;Parent=Msa1178610-mRNA-1 |
| chr8_1 | CDS | 11447947 | 11448051 | 11447947 | ID=Msa1178610-mRNA-1:cds;Parent=Msa1178610-mRNA-1 |
| chr8_1 | CDS | 11448509 | 11448769 | 11448509 | ID=Msa1178610-mRNA-1:cds;Parent=Msa1178610-mRNA-1 |
| chr8_1 | CDS | 11449171 | 11449311 | 11449171 | ID=Msa1178610-mRNA-1:cds;Parent=Msa1178610-mRNA-1 |
| chr8_1 | three_prime_UTR | 11449312 | 11449405 | 11449312 | ID=Msa1178610-mRNA-1:three_prime_utr;Parent=Msa1178610-mRNA-1 |
| chr8_1 | three_prime_UTR | 11449604 | 11449726 | 11449604 | ID=Msa1178610-mRNA-1:three_prime_utr;Parent=Msa1178610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
