AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0450880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450880 MtrunA17_Chr3g0095391 95.339 472 18 1 1 472 1 468 0.0 911
Msa0450880 MtrunA17_Chr1g0182791 32.737 559 248 22 1 475 1 515 7.54e-53 187
Msa0450880 MtrunA17_Chr7g0262691 44.813 241 95 7 262 468 202 438 6.44e-42 156
Msa0450880 MtrunA17_Chr1g0193321 58.333 144 53 4 253 391 402 543 3.44e-35 140
Msa0450880 MtrunA17_Chr7g0271251 36.424 302 136 11 152 405 245 538 8.64e-29 120
Msa0450880 MtrunA17_Chr1g0153241 58.000 100 38 2 291 388 65 162 4.39e-27 110
Msa0450880 MtrunA17_Chr7g0270871 49.107 112 49 3 287 390 173 284 2.95e-23 101
Msa0450880 MtrunA17_Chr5g0402031 68.571 70 20 1 322 391 114 181 3.74e-22 97.8
Msa0450880 MtrunA17_Chr3g0095411 97.619 42 1 0 474 515 1 42 5.18e-21 86.3
Msa0450880 MtrunA17_Chr7g0231461 45.600 125 55 3 256 375 243 359 4.46e-20 93.2
Msa0450880 MtrunA17_Chr4g0074161 57.143 63 27 0 315 377 208 270 2.85e-17 84.0
Msa0450880 MtrunA17_Chr1g0190731 53.968 63 29 0 315 377 195 257 1.06e-15 78.6
Msa0450880 MtrunA17_Chr5g0393721 44.304 79 37 2 308 379 217 295 8.81e-14 72.8
Msa0450880 MtrunA17_Chr1g0207311 37.500 88 45 2 300 377 178 265 1.67e-12 68.2
Msa0450880 MtrunA17_Chr1g0152131 39.450 109 61 3 270 377 221 325 3.93e-12 68.2
Msa0450880 MtrunA17_Chr3g0131771 47.945 73 36 2 315 385 149 221 4.77e-12 67.4
Msa0450880 MtrunA17_Chr5g0421111 34.211 152 83 6 315 449 367 518 5.49e-12 68.2
Msa0450880 MtrunA17_Chr3g0134741 34.694 98 51 3 315 407 231 320 6.45e-12 67.0
Msa0450880 MtrunA17_Chr7g0234761 50.000 64 31 1 315 377 319 382 1.14e-11 67.0
Msa0450880 MtrunA17_Chr6g0484271 33.333 153 79 5 233 375 79 218 1.30e-11 65.5
Msa0450880 MtrunA17_Chr3g0144641 50.000 64 31 1 315 377 193 256 1.62e-11 66.2
Msa0450880 MtrunA17_Chr1g0152651 44.118 68 33 1 315 377 276 343 1.92e-11 65.9
Msa0450880 MtrunA17_Chr8g0339091 50.000 64 31 1 315 377 293 356 1.98e-11 66.2
Msa0450880 MtrunA17_Chr1g0174161 31.132 106 71 2 315 418 162 267 2.89e-11 64.7
Msa0450880 MtrunA17_Chr8g0365941 36.196 163 71 10 315 452 307 461 2.95e-11 65.9
Msa0450880 MtrunA17_Chr8g0385911 43.243 74 40 2 315 386 147 220 4.19e-11 64.3
Msa0450880 MtrunA17_Chr8g0363921 46.875 64 33 1 315 377 153 216 5.27e-11 63.5
Msa0450880 MtrunA17_Chr4g0035101 48.438 64 32 1 315 377 145 208 7.35e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450880 AT2G43010.2 35.785 503 226 18 8 498 6 423 3.62e-62 210
Msa0450880 AT2G43010.1 35.644 505 226 19 8 498 6 425 3.19e-60 205
Msa0450880 AT2G43010.3 35.644 505 226 19 8 498 13 432 5.02e-60 204
Msa0450880 AT2G43010.5 35.842 505 225 20 8 498 48 467 7.53e-60 205
Msa0450880 AT2G43010.4 35.789 475 210 17 8 472 6 395 6.97e-57 195
Msa0450880 AT3G59060.3 44.144 333 115 14 195 497 146 437 3.57e-46 167
Msa0450880 AT3G59060.2 44.144 333 115 14 195 497 146 437 3.57e-46 167
Msa0450880 AT3G59060.4 44.144 333 115 14 195 497 146 437 3.57e-46 167
Msa0450880 AT3G59060.1 44.411 331 115 14 195 497 146 435 7.92e-46 166
Msa0450880 AT2G20180.4 37.300 437 191 18 1 410 1 381 7.68e-45 165
Msa0450880 AT2G20180.6 37.300 437 191 18 1 410 1 381 7.68e-45 165
Msa0450880 AT2G20180.2 37.300 437 191 18 1 410 1 381 7.68e-45 165
Msa0450880 AT2G20180.3 37.300 437 191 18 1 410 1 381 7.68e-45 165
Msa0450880 AT2G20180.8 35.678 398 179 17 1 377 1 342 5.06e-39 145
Msa0450880 AT2G20180.7 38.352 352 147 13 74 410 14 310 1.00e-37 144
Msa0450880 AT2G20180.1 38.352 352 147 13 74 410 14 310 1.00e-37 144
Msa0450880 AT2G20180.5 38.352 352 147 13 74 410 14 310 1.00e-37 144
Msa0450880 AT1G09530.3 33.641 434 197 20 19 392 18 420 5.77e-35 138
Msa0450880 AT1G09530.2 33.641 434 197 20 19 392 18 420 5.77e-35 138
Msa0450880 AT1G09530.5 33.641 434 197 20 19 392 18 420 5.77e-35 138
Msa0450880 AT1G09530.1 33.641 434 197 20 19 392 18 420 5.77e-35 138
Msa0450880 AT1G09530.4 33.641 434 197 20 19 392 18 420 5.77e-35 138
Msa0450880 AT1G09530.6 33.641 434 197 20 19 392 18 420 5.77e-35 138
Msa0450880 AT4G28800.1 28.355 462 237 14 27 463 19 411 5.22e-29 120
Msa0450880 AT4G28800.2 28.139 462 232 15 27 463 31 417 3.06e-27 114
Msa0450880 AT5G67110.1 48.529 136 48 3 254 387 48 163 2.79e-26 106
Msa0450880 AT4G28790.1 28.750 400 214 14 27 408 24 370 4.66e-25 107
Msa0450880 AT4G36930.1 73.611 72 17 1 319 388 197 268 5.95e-25 107
Msa0450880 AT4G28815.2 42.391 184 71 10 301 473 53 212 1.01e-24 103
Msa0450880 AT4G28815.1 42.391 184 71 10 301 473 129 288 2.02e-24 103
Msa0450880 AT2G46970.2 41.379 174 81 7 254 414 133 298 2.86e-24 105
Msa0450880 AT2G46970.3 41.379 174 81 7 254 414 142 307 3.32e-24 105
Msa0450880 AT2G46970.1 41.520 171 79 7 257 414 167 329 4.63e-24 105
Msa0450880 AT4G00050.2 44.828 145 50 5 240 375 44 167 1.83e-22 98.2
Msa0450880 AT4G00050.3 44.828 145 50 5 240 375 146 269 4.33e-22 98.6
Msa0450880 AT4G00050.1 44.828 145 50 5 240 375 146 269 5.05e-22 98.6
Msa0450880 AT2G24260.2 58.730 63 26 0 315 377 37 99 1.08e-18 86.3
Msa0450880 AT2G24260.1 58.730 63 26 0 315 377 140 202 4.70e-18 86.3
Msa0450880 AT4G28790.2 27.147 361 196 11 27 373 24 331 5.72e-18 85.9
Msa0450880 AT5G58010.1 54.054 74 31 1 304 377 93 163 6.52e-18 84.7
Msa0450880 AT4G30980.1 57.143 63 27 0 315 377 132 194 1.24e-17 84.3
Msa0450880 AT4G30980.2 57.143 63 27 0 315 377 180 242 3.17e-17 84.0
Msa0450880 AT3G62090.1 49.474 95 45 3 308 400 160 253 8.96e-17 82.4
Msa0450880 AT3G62090.2 49.474 95 45 3 308 400 177 270 1.11e-16 82.0
Msa0450880 AT4G28811.1 36.992 246 123 6 248 474 295 527 1.16e-16 83.2
Msa0450880 AT1G26260.3 33.333 165 92 5 260 406 103 267 1.22e-14 75.9
Msa0450880 AT1G26260.4 33.333 165 92 5 260 406 154 318 1.51e-14 75.9
Msa0450880 AT1G26260.1 33.333 165 92 5 260 406 154 318 1.51e-14 75.9
Msa0450880 AT1G26260.6 33.333 165 92 5 260 406 154 318 1.51e-14 75.9
Msa0450880 AT1G26260.2 33.333 165 92 5 260 406 154 318 1.51e-14 75.9
Msa0450880 AT1G26260.5 33.333 165 92 5 260 406 132 296 1.67e-14 75.5
Msa0450880 AT1G68240.1 38.710 124 67 4 315 432 63 183 5.84e-14 70.9
Msa0450880 AT5G61270.2 46.078 102 53 2 287 387 47 147 2.31e-13 70.9
Msa0450880 AT5G61270.3 46.078 102 53 2 287 387 47 147 2.31e-13 70.9
Msa0450880 AT5G61270.1 46.078 102 53 2 287 387 135 235 2.40e-13 72.0
Msa0450880 AT4G33880.1 35.652 115 57 4 296 403 247 351 4.41e-13 71.2
Msa0450880 AT5G43175.1 40.789 76 40 1 307 377 126 201 5.01e-13 68.9
Msa0450880 AT1G68240.2 39.091 110 61 3 315 418 63 172 5.25e-13 67.8
Msa0450880 AT1G02340.1 36.667 120 52 3 281 400 113 208 5.97e-13 70.1
Msa0450880 AT1G02340.2 36.667 120 52 3 281 400 106 201 6.95e-13 69.7
Msa0450880 AT5G50915.1 29.358 218 100 8 238 415 53 256 1.26e-12 68.9
Msa0450880 AT5G50915.2 29.358 218 100 8 238 415 53 256 1.26e-12 68.9
Msa0450880 AT2G14760.1 38.710 93 49 2 290 377 217 306 1.44e-12 69.3
Msa0450880 AT1G27740.1 36.449 107 59 3 291 391 148 251 1.66e-12 68.2
Msa0450880 AT5G50915.3 29.279 222 95 9 238 415 53 256 1.83e-12 68.2
Msa0450880 AT5G50915.4 29.279 222 95 9 238 415 53 256 1.83e-12 68.2
Msa0450880 AT2G18300.3 30.808 198 113 7 274 448 129 325 4.52e-12 68.2
Msa0450880 AT2G18300.2 30.808 198 113 7 274 448 129 325 4.82e-12 67.8
Msa0450880 AT2G14760.3 42.647 68 34 1 315 377 252 319 1.23e-11 66.6
Msa0450880 AT3G23690.1 33.333 144 87 4 239 377 117 256 1.32e-11 66.6
Msa0450880 AT4G34530.1 48.438 64 32 1 315 377 174 237 1.71e-11 66.2
Msa0450880 AT3G07340.2 39.216 102 43 3 292 377 225 323 2.00e-11 66.6
Msa0450880 AT3G07340.1 39.216 102 43 3 292 377 225 323 2.02e-11 66.6
Msa0450880 AT1G68920.3 39.286 112 58 5 315 418 304 413 3.01e-11 66.2
Msa0450880 AT1G68920.1 39.286 112 58 5 315 418 305 414 3.10e-11 66.2
Msa0450880 AT1G68920.4 39.286 112 58 5 315 418 305 414 3.10e-11 66.2
Msa0450880 AT1G68920.2 39.286 112 58 5 315 418 305 414 3.10e-11 66.2
Msa0450880 AT2G18300.1 30.653 199 110 8 274 448 129 323 3.61e-11 65.1
Msa0450880 AT5G48560.2 50.000 64 31 1 315 377 303 366 3.79e-11 65.9
Msa0450880 AT5G67110.2 40.367 109 44 3 254 362 48 135 3.95e-11 61.6
Msa0450880 AT5G48560.1 50.000 64 31 1 315 377 303 366 4.48e-11 65.5
Msa0450880 AT4G36540.2 36.697 109 60 3 277 377 99 206 6.66e-11 63.9
Msa0450880 AT4G36540.1 36.697 109 60 3 277 377 99 206 6.71e-11 63.9
Msa0450880 AT1G10120.2 48.438 64 32 1 315 377 208 271 6.75e-11 64.7
Msa0450880 AT1G10120.1 48.438 64 32 1 315 377 208 271 6.75e-11 64.7
Msa0450880 AT5G67110.3 37.500 136 41 4 254 387 48 141 7.87e-11 62.0

Find 135 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGATCATCTTAAAATTT+AGG 0.159860 3_3:-37320299 None:intergenic
ACCGTTCCTGATTGGAATTT+TGG 0.193756 3_3:+37317499 Msa0450880:CDS
GGCAAGTGTTCAAGGAAATA+AGG 0.207090 3_3:-37320495 None:intergenic
TTATATAACAATGAAGAAAT+TGG 0.215837 3_3:+37320419 Msa0450880:three_prime_UTR
AACAATGAAGAAATTGGTTT+TGG 0.267766 3_3:+37320425 Msa0450880:three_prime_UTR
TACTTCATCTTCTGGTGGTT+CGG 0.273371 3_3:+37318366 Msa0450880:CDS
GTTACTCCATAGGTTCTTCT+AGG 0.280860 3_3:-37320108 None:intergenic
GAACTTGTTTCTTATTTGTT+TGG 0.281722 3_3:-37317727 None:intergenic
TGATGCTGTGGGTGGCAAAA+TGG 0.294348 3_3:+37319885 Msa0450880:CDS
CATTGGTCCACTGCTATTGC+TGG 0.300560 3_3:-37319842 None:intergenic
TGTTCAAGTGGATCCTCAAT+AGG 0.303381 3_3:-37317857 None:intergenic
GAGTCTAAATGTGAAATAAA+AGG 0.312754 3_3:+37320372 Msa0450880:three_prime_UTR
AGGCACCTAAAACAGGATTT+TGG 0.314829 3_3:-37319356 None:intergenic
ATCACTTCAGTTACAACTTC+AGG 0.334793 3_3:+37319065 Msa0450880:CDS
ACGAACTTGTGGAGCTTCTA+TGG 0.337832 3_3:+37317678 Msa0450880:CDS
AAGGTGGAAGTTCAGATAAA+AGG 0.339660 3_3:-37317895 None:intergenic
TAAATCAGCCGTGAGGAAAA+AGG 0.343366 3_3:+37318588 Msa0450880:CDS
GGGTATCAAGCAACGGTGTT+TGG 0.343568 3_3:+37318245 Msa0450880:CDS
CATCTTGATCCTGTTGGACT+TGG 0.357855 3_3:-37318216 None:intergenic
GTTTATAAATAGAGGCAATT+AGG 0.360186 3_3:+37320271 Msa0450880:three_prime_UTR
CTGTGTGTGTCCTTATGCTT+TGG 0.363689 3_3:-37316683 None:intergenic
ACTTCATCTTCTGGTGGTTC+GGG 0.366507 3_3:+37318367 Msa0450880:CDS
AAGATGATGAAACTGTTTCA+TGG 0.378684 3_3:+37317822 Msa0450880:CDS
GTTGTTTCTTTGCAATGAAT+CGG 0.393694 3_3:-37318014 None:intergenic
GAAAATATGTTTATAAATAG+AGG 0.394472 3_3:+37320263 Msa0450880:three_prime_UTR
ATGTTTGCTGTTCCACTCAT+TGG 0.397921 3_3:-37319859 None:intergenic
TGCTTACATCTTGATCCTGT+TGG 0.402600 3_3:-37318222 None:intergenic
TTTGTTGCTGGTTACTCCAT+AGG 0.402807 3_3:-37320118 None:intergenic
GACGGATCCAGAGGCATTCT+CGG 0.403301 3_3:-37319294 None:intergenic
GCAAGTGTTCAAGGAAATAA+GGG 0.408689 3_3:-37320494 None:intergenic
TGGCACGTTAATGTCTGGTT+TGG 0.412714 3_3:-37319336 None:intergenic
GGTGCAAATAGGTACTGGTT+TGG 0.413855 3_3:+37317446 Msa0450880:intron
TCAGCACTATATGTCACAAA+TGG 0.421098 3_3:+37319218 Msa0450880:CDS
TGATGCAGAGGCGAAGAGAT+AGG 0.422904 3_3:+37318751 Msa0450880:intron
AGACCAATATGCTCGTTACA+TGG 0.423165 3_3:+37319416 Msa0450880:CDS
TTGTTATATAATTTCAATGA+AGG 0.423411 3_3:-37320407 None:intergenic
GTCATGACTTCTAGTAGATA+AGG 0.426415 3_3:-37318413 None:intergenic
TAATATGAGAACAATATTAG+AGG 0.432266 3_3:-37319940 None:intergenic
TCTTATGCAAAATGCTTCTC+AGG 0.438287 3_3:+37319446 Msa0450880:CDS
ACAATTCCTCGGCATGAGAA+TGG 0.443028 3_3:+37318316 Msa0450880:CDS
CTCACACTTTCCAAAGCATA+AGG 0.443353 3_3:+37316673 Msa0450880:five_prime_UTR
TGAACAACACCGTTCCTGAT+TGG 0.444912 3_3:+37317491 Msa0450880:CDS
TTGTTTCTTTGCAATGAATC+GGG 0.448535 3_3:-37318013 None:intergenic
CGGAAGCAACCAAGTCCAAC+AGG 0.451058 3_3:+37318207 Msa0450880:CDS
CCATATCTGTACATATTCAT+TGG 0.451704 3_3:-37319781 None:intergenic
GTAGATGCTAAAGTAACATT+GGG 0.457098 3_3:-37318088 None:intergenic
TAGTTGAAGGCACCTAAAAC+AGG 0.459214 3_3:-37319363 None:intergenic
CTATATGTCACAAATGGGTA+TGG 0.459276 3_3:+37319224 Msa0450880:CDS
GATCATCTTAAAATTTAGGT+TGG 0.466929 3_3:-37320295 None:intergenic
CAATTCCTCGGCATGAGAAT+GGG 0.468759 3_3:+37318317 Msa0450880:CDS
AGCCCATGTAACGAGCATAT+TGG 0.469698 3_3:-37319419 None:intergenic
GGTACTGGTTTGGTTCAGTT+CGG 0.469938 3_3:+37317456 Msa0450880:intron
GTTCAAGTGGATCCTCAATA+GGG 0.473250 3_3:-37317856 None:intergenic
AACAGGATCAAGATGTAAGC+AGG 0.473432 3_3:+37318224 Msa0450880:CDS
TCGGCATGAGAATGGGAAAT+CGG 0.473920 3_3:+37318324 Msa0450880:CDS
GATCCTCAATAGGGTATTGT+TGG 0.475150 3_3:-37317847 None:intergenic
GAACATAATTCTTGTTCAAG+TGG 0.477770 3_3:-37317869 None:intergenic
AACAACGATTTGTGTGGATC+CGG 0.480481 3_3:+37318031 Msa0450880:CDS
ATAGGAAATTCCTGAACAAA+AGG 0.481459 3_3:-37317962 None:intergenic
GCAATTACCGAGAATGCCTC+TGG 0.483577 3_3:+37319287 Msa0450880:CDS
TGTTCAGGAATTTCCTATGT+CGG 0.485624 3_3:+37317967 Msa0450880:CDS
TAGGTAATGTGGATGGGATC+TGG 0.490326 3_3:+37319168 Msa0450880:intron
CCAATGAATATGTACAGATA+TGG 0.491789 3_3:+37319781 Msa0450880:CDS
TGTAGATGCTAAAGTAACAT+TGG 0.495901 3_3:-37318089 None:intergenic
CATGACACCGATGATGCTAC+CGG 0.496261 3_3:+37319191 Msa0450880:CDS
TTCTGTTAGGTAATGTGGAT+GGG 0.497202 3_3:+37319162 Msa0450880:intron
TTTCTGTTAGGTAATGTGGA+TGG 0.497338 3_3:+37319161 Msa0450880:intron
GATCTTTCTGTTAGGTAATG+TGG 0.500720 3_3:+37319157 Msa0450880:intron
AGTTCATAATCTTTCAGAAA+GGG 0.500729 3_3:+37318654 Msa0450880:CDS
GATGCTGTGGGTGGCAAAAT+GGG 0.501876 3_3:+37319886 Msa0450880:CDS
GGTGGTTCGGGAAGTAGTCT+TGG 0.502929 3_3:+37318379 Msa0450880:CDS
TCACTCCCAAAATTCCAATC+AGG 0.503469 3_3:-37317505 None:intergenic
GGCGTCTCAGCGGTCAGGGT+CGG 0.510720 3_3:+37318609 Msa0450880:CDS
ACATATATTTATAGTTGAGC+TGG 0.511215 3_3:-37320151 None:intergenic
GGAATTCCTAGAAGAACCTA+TGG 0.512827 3_3:+37320102 Msa0450880:three_prime_UTR
TTGAAAGACTCGACATTACA+AGG 0.516339 3_3:-37317914 None:intergenic
GAATGGGAAATCGGAGATGT+TGG 0.520509 3_3:+37318333 Msa0450880:CDS
AATCAAAAGAAGCAACCTAC+GGG 0.523357 3_3:+37317541 Msa0450880:CDS
ACTCATACCTCACAGTAGTA+AGG 0.524016 3_3:+37318803 Msa0450880:CDS
CAGCACTATATGTCACAAAT+GGG 0.528954 3_3:+37319219 Msa0450880:CDS
GACATATAGTGCTGATATCC+CGG 0.534372 3_3:-37319210 None:intergenic
GTTACTTTAGCATCTACAAA+CGG 0.535195 3_3:+37318094 Msa0450880:CDS
GGCATTCTCGGTAATTGCAT+CGG 0.543563 3_3:-37319282 None:intergenic
TGAAACCTCGGAGCCGACAT+AGG 0.544656 3_3:-37317980 None:intergenic
ATAGAAGCTCCACAAGTTCG+TGG 0.546102 3_3:-37317676 None:intergenic
TGATATCCCGGTAGCATCAT+CGG 0.547358 3_3:-37319198 None:intergenic
AGCGGTCAGGGTCGGCTCGT+AGG 0.550460 3_3:+37318617 Msa0450880:CDS
TTACAGGTTAATTAGTCTAG+AGG 0.560592 3_3:+37320081 Msa0450880:three_prime_UTR
CAAAGAAACAACGATTTGTG+TGG 0.566041 3_3:+37318025 Msa0450880:CDS
GACAATAGAGAAGTATGTGT+TGG 0.566323 3_3:-37319913 None:intergenic
GCATATTGGTCTGAAAGAGC+AGG 0.571879 3_3:-37319405 None:intergenic
AAGTTCATAATCTTTCAGAA+AGG 0.571933 3_3:+37318653 Msa0450880:CDS
ATTGGTCCACTGCTATTGCT+GGG 0.572900 3_3:-37319841 None:intergenic
CGATTTGTGTGGATCCGGCA+AGG 0.573793 3_3:+37318036 Msa0450880:CDS
GTGGAGCTTCTATGGCAGAA+TGG 0.575038 3_3:+37317686 Msa0450880:CDS
CATCAGCAAGTCAGAAACAA+AGG 0.580980 3_3:+37316778 Msa0450880:five_prime_UTR
AAAAGGCGTCTCAGCGGTCA+GGG 0.585213 3_3:+37318605 Msa0450880:CDS
CCAGAAGATGAAGTAAAAGC+AGG 0.586941 3_3:-37318358 None:intergenic
GATCCAACAATACCCTATTG+AGG 0.587994 3_3:+37317844 Msa0450880:CDS
TATATGTCACAAATGGGTAT+GGG 0.594345 3_3:+37319225 Msa0450880:CDS
TGGCGTCTGAGACGAAGAAA+CGG 0.594801 3_3:-37319316 None:intergenic
CCCAAAATTCCAATCAGGAA+CGG 0.594898 3_3:-37317500 None:intergenic
CAATCAAAAGAAGCAACCTA+CGG 0.595725 3_3:+37317540 Msa0450880:CDS
ATGACACCGATGATGCTACC+GGG 0.598634 3_3:+37319192 Msa0450880:CDS
TTAAGATGATCTATTCGTTG+CGG 0.601252 3_3:+37320307 Msa0450880:three_prime_UTR
CAAAGCATCGATGTTAGAAG+AGG 0.601358 3_3:+37319026 Msa0450880:CDS
AGCAAACATTAATGATGCTG+TGG 0.601820 3_3:+37319873 Msa0450880:CDS
GATTTCCCATTCTCATGCCG+AGG 0.602580 3_3:-37318322 None:intergenic
GACCAATATGCTCGTTACAT+GGG 0.602605 3_3:+37319417 Msa0450880:CDS
GATGGATGTTGAAGATTCAG+TGG 0.609243 3_3:+37318450 Msa0450880:CDS
AAGTGGAGGAAAGGAAGGTG+TGG 0.614821 3_3:-37319253 None:intergenic
GGAAATTCCTGAACAAAAGG+CGG 0.618190 3_3:-37317959 None:intergenic
ATGTTCAGAGAACAATTCCT+CGG 0.618230 3_3:+37318305 Msa0450880:CDS
CTGTGGGTGGCAAAATGGGT+AGG 0.622005 3_3:+37319890 Msa0450880:CDS
GAGTGTTCGACGATGACAGT+TGG 0.633825 3_3:+37318172 Msa0450880:CDS
CAGGTTGGACCACGAACTTG+TGG 0.633914 3_3:+37317667 Msa0450880:intron
GAAGAAACGGACGGATCCAG+AGG 0.636646 3_3:-37319303 None:intergenic
GGAACATGATGATGAAACCT+CGG 0.639628 3_3:-37317992 None:intergenic
ACAGGATCAAGATGTAAGCA+GGG 0.649737 3_3:+37318225 Msa0450880:CDS
AGATTCAGTGGAACAAAGCG+AGG 0.656069 3_3:+37318462 Msa0450880:CDS
GTAAGCAGGGTATCAAGCAA+CGG 0.657240 3_3:+37318238 Msa0450880:CDS
ACAGTTGGTTCGAGTTATTG+CGG 0.658618 3_3:+37318187 Msa0450880:CDS
AACATTAATGATGCTGTGGG+TGG 0.661408 3_3:+37319877 Msa0450880:CDS
AATAGCAGTGGACCAATGAG+TGG 0.668226 3_3:+37319847 Msa0450880:CDS
GGTCCACTGCTATTGCTGGG+TGG 0.669356 3_3:-37319838 None:intergenic
ATTCCACCCAGCAATAGCAG+TGG 0.670400 3_3:+37319835 Msa0450880:CDS
AATTTCCTATGTCGGCTCCG+AGG 0.681257 3_3:+37317975 Msa0450880:CDS
GTCTGAGACGAAGAAACGGA+CGG 0.684136 3_3:-37319312 None:intergenic
GCAAACATTAATGATGCTGT+GGG 0.698935 3_3:+37319874 Msa0450880:CDS
ATATTGAACACACACCCCGT+AGG 0.701976 3_3:-37317556 None:intergenic
GATTATGAACTTCAGCAGCG+CGG 0.709911 3_3:-37318642 None:intergenic
TGACAAACCTTACTACTGTG+AGG 0.713524 3_3:-37318810 None:intergenic
CAGAACTTAAATCAGCCGTG+AGG 0.748263 3_3:+37318581 Msa0450880:CDS
ATCAAAAGAAGCAACCTACG+GGG 0.753059 3_3:+37317542 Msa0450880:CDS
AAAGACTCGACATTACAAGG+TGG 0.771998 3_3:-37317911 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGAATAAAAAATTTAAA+GGG - chr3_3:37317284-37317303 None:intergenic 10.0%
!! AAAAGGAATAAAAAATTTAA+AGG - chr3_3:37317285-37317304 None:intergenic 10.0%
!!! GATTTTAATATTGATAAAAA+AGG - chr3_3:37317302-37317321 None:intergenic 10.0%
!! TAGTTTAATCAAATTTAATT+TGG - chr3_3:37317612-37317631 None:intergenic 10.0%
!! AATGTGAATGTTATAAATAA+TGG + chr3_3:37316866-37316885 Msa0450880:intron 15.0%
!!! TTCTTATTTTCTTCTTTTTA+AGG + chr3_3:37316984-37317003 Msa0450880:intron 15.0%
!!! TATTTTATTCTTCTACTTAA+TGG + chr3_3:37317361-37317380 Msa0450880:intron 15.0%
!!! AAACTAATTTTCTTTCATTT+TGG + chr3_3:37317425-37317444 Msa0450880:intron 15.0%
!!! AAATTTTAGAGACAAAATTA+CGG + chr3_3:37318123-37318142 Msa0450880:CDS 15.0%
!! GAAAATATGTTTATAAATAG+AGG + chr3_3:37320263-37320282 Msa0450880:three_prime_UTR 15.0%
!! AATAGATCATCTTAAAATTT+AGG - chr3_3:37320302-37320321 None:intergenic 15.0%
!! TTGTTATATAATTTCAATGA+AGG - chr3_3:37320410-37320429 None:intergenic 15.0%
!! TTATATAACAATGAAGAAAT+TGG + chr3_3:37320419-37320438 Msa0450880:three_prime_UTR 15.0%
!! ATAACATTCACATTTAGATA+AGG - chr3_3:37316860-37316879 None:intergenic 20.0%
!! AACATTAAACACAACAAATT+AGG - chr3_3:37317071-37317090 None:intergenic 20.0%
!!! AATCTCATGCATATTTTAAA+TGG + chr3_3:37317327-37317346 Msa0450880:intron 20.0%
!!! AATTTTAGAGACAAAATTAC+GGG + chr3_3:37318124-37318143 Msa0450880:CDS 20.0%
!! AATTGCGTATAAAAAAAACA+TGG - chr3_3:37318841-37318860 None:intergenic 20.0%
!! TGTGATTAAATCATACAAAA+TGG - chr3_3:37318965-37318984 None:intergenic 20.0%
!!! AATTTTTTGATCTTTCTGTT+AGG + chr3_3:37319149-37319168 Msa0450880:intron 20.0%
!! TTTCCATAGGTAAATTATAA+GGG - chr3_3:37319726-37319745 None:intergenic 20.0%
!! ATTTCCATAGGTAAATTATA+AGG - chr3_3:37319727-37319746 None:intergenic 20.0%
!! AAGGTAAAATTAATTTCCAT+AGG - chr3_3:37319739-37319758 None:intergenic 20.0%
!!! ATTAATTTTACCTTGTATGT+TGG + chr3_3:37319745-37319764 Msa0450880:intron 20.0%
!! TAATATGAGAACAATATTAG+AGG - chr3_3:37319943-37319962 None:intergenic 20.0%
!!! TATACAAGTGACTTATTTTT+TGG + chr3_3:37320202-37320221 Msa0450880:three_prime_UTR 20.0%
!!! ATACAAGTGACTTATTTTTT+GGG + chr3_3:37320203-37320222 Msa0450880:three_prime_UTR 20.0%
!! AAATCTATTTTGCTCAGTTT+AGG + chr3_3:37316814-37316833 Msa0450880:five_prime_UTR 25.0%
!! TTTTTATGATCTTTCTCTTC+TGG + chr3_3:37317106-37317125 Msa0450880:intron 25.0%
!! TTTTATGATCTTTCTCTTCT+GGG + chr3_3:37317107-37317126 Msa0450880:intron 25.0%
!!! AGAGTTATTTCTCCAATTTT+GGG + chr3_3:37317165-37317184 Msa0450880:intron 25.0%
!! GAACTTGTTTCTTATTTGTT+TGG - chr3_3:37317730-37317749 None:intergenic 25.0%
! AAGTTCATAATCTTTCAGAA+AGG + chr3_3:37318653-37318672 Msa0450880:CDS 25.0%
! AGTTCATAATCTTTCAGAAA+GGG + chr3_3:37318654-37318673 Msa0450880:CDS 25.0%
!!! CGCAAAATTTTAGAAAACAT+CGG - chr3_3:37318707-37318726 None:intergenic 25.0%
!!! TGCTAGTGGTTAATTTTTTA+AGG + chr3_3:37318860-37318879 Msa0450880:intron 25.0%
!! AATCGATAGTTTTCTATACA+CGG - chr3_3:37318940-37318959 None:intergenic 25.0%
! TTTGTATGATTTAATCACAG+TGG + chr3_3:37318966-37318985 Msa0450880:intron 25.0%
! ATATGCAAGAGATTATTGTA+TGG - chr3_3:37319104-37319123 None:intergenic 25.0%
! AAAATTTCTTTAGCAATGTG+AGG - chr3_3:37319135-37319154 None:intergenic 25.0%
! AGACTATTTAGAAGATCTTA+CGG + chr3_3:37319525-37319544 Msa0450880:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3_3:37319571-37319590 None:intergenic 25.0%
! AAACTATCATGAAGAACTTA+TGG - chr3_3:37319595-37319614 None:intergenic 25.0%
!! TTAAGTTAGTTTATCCAAAC+AGG + chr3_3:37319681-37319700 Msa0450880:intron 25.0%
!! TAAGTTAGTTTATCCAAACA+GGG + chr3_3:37319682-37319701 Msa0450880:intron 25.0%
! TTCCATAGGTAAATTATAAG+GGG - chr3_3:37319725-37319744 None:intergenic 25.0%
!!! TTACTTGTCATTTTGTTTAC+AGG + chr3_3:37320065-37320084 Msa0450880:three_prime_UTR 25.0%
! ACATATATTTATAGTTGAGC+TGG - chr3_3:37320154-37320173 None:intergenic 25.0%
! GTTTATAAATAGAGGCAATT+AGG + chr3_3:37320271-37320290 Msa0450880:three_prime_UTR 25.0%
! GATCATCTTAAAATTTAGGT+TGG - chr3_3:37320298-37320317 None:intergenic 25.0%
! GAGTCTAAATGTGAAATAAA+AGG + chr3_3:37320372-37320391 Msa0450880:three_prime_UTR 25.0%
!!! AACAATGAAGAAATTGGTTT+TGG + chr3_3:37320425-37320444 Msa0450880:three_prime_UTR 25.0%
!!! GAGAGTTATTTCTCCAATTT+TGG + chr3_3:37317164-37317183 Msa0450880:intron 30.0%
AATTTCAAGAGTCCCAAAAT+TGG - chr3_3:37317180-37317199 None:intergenic 30.0%
!!! AATTTTGGGACTCTTGAAAT+TGG + chr3_3:37317179-37317198 Msa0450880:intron 30.0%
ACTCTTGAAATTGGAATTCT+TGG + chr3_3:37317188-37317207 Msa0450880:intron 30.0%
TTAAGAGTTTAGATCATGTG+TGG - chr3_3:37317260-37317279 None:intergenic 30.0%
TGGAGTCAAATTCTACTTAA+AGG + chr3_3:37317381-37317400 Msa0450880:intron 30.0%
!! TCTTTCATTTTGGTGCAAAT+AGG + chr3_3:37317435-37317454 Msa0450880:intron 30.0%
AACCATGTGTTTAACATTAC+AGG + chr3_3:37317648-37317667 Msa0450880:intron 30.0%
AACCTGTAATGTTAAACACA+TGG - chr3_3:37317653-37317672 None:intergenic 30.0%
ATGTGTTTAACATTACAGGT+TGG + chr3_3:37317652-37317671 Msa0450880:intron 30.0%
AAGATGATGAAACTGTTTCA+TGG + chr3_3:37317822-37317841 Msa0450880:CDS 30.0%
GAACATAATTCTTGTTCAAG+TGG - chr3_3:37317872-37317891 None:intergenic 30.0%
ATAGGAAATTCCTGAACAAA+AGG - chr3_3:37317965-37317984 None:intergenic 30.0%
! TTGTTTCTTTGCAATGAATC+GGG - chr3_3:37318016-37318035 None:intergenic 30.0%
!! GTTGTTTCTTTGCAATGAAT+CGG - chr3_3:37318017-37318036 None:intergenic 30.0%
AGAAAAATTTACAACCTTGC+CGG - chr3_3:37318053-37318072 None:intergenic 30.0%
GTAGATGCTAAAGTAACATT+GGG - chr3_3:37318091-37318110 None:intergenic 30.0%
TGTAGATGCTAAAGTAACAT+TGG - chr3_3:37318092-37318111 None:intergenic 30.0%
! GTTACTTTAGCATCTACAAA+CGG + chr3_3:37318094-37318113 Msa0450880:CDS 30.0%
!!! ACATCATTTTTGACTTGTTC+AGG - chr3_3:37318289-37318308 None:intergenic 30.0%
AAGTAAAAAGATAGAGTGCA+CGG - chr3_3:37318493-37318512 None:intergenic 30.0%
TTCACTGAGTTATGATTTGA+CGG + chr3_3:37318541-37318560 Msa0450880:intron 30.0%
ATTTGACGGTTTGTGTTAAT+AGG + chr3_3:37318555-37318574 Msa0450880:intron 30.0%
ATAATCTTTCAGAAAGGGTA+AGG + chr3_3:37318659-37318678 Msa0450880:intron 30.0%
! TTTTTATACGCAATTGCTAG+TGG + chr3_3:37318846-37318865 Msa0450880:intron 30.0%
!! ACAAAGAATTTGTTACTAGC+AGG + chr3_3:37318885-37318904 Msa0450880:intron 30.0%
TATATGTCACAAATGGGTAT+GGG + chr3_3:37319225-37319244 Msa0450880:CDS 30.0%
TCTTAAATTTAGACCCTGTT+TGG - chr3_3:37319698-37319717 None:intergenic 30.0%
CAAAATAGTACCAACATACA+AGG - chr3_3:37319758-37319777 None:intergenic 30.0%
CCATATCTGTACATATTCAT+TGG - chr3_3:37319784-37319803 None:intergenic 30.0%
CCAATGAATATGTACAGATA+TGG + chr3_3:37319781-37319800 Msa0450880:CDS 30.0%
! TTGACTATTTTGTACAGCTT+GGG - chr3_3:37319809-37319828 None:intergenic 30.0%
! TTTGACTATTTTGTACAGCT+TGG - chr3_3:37319810-37319829 None:intergenic 30.0%
! TTACAGGTTAATTAGTCTAG+AGG + chr3_3:37320081-37320100 Msa0450880:three_prime_UTR 30.0%
TTAAGATGATCTATTCGTTG+CGG + chr3_3:37320307-37320326 Msa0450880:three_prime_UTR 30.0%
AGAAAAAGCAGGAACAAACA+AGG + chr3_3:37316723-37316742 Msa0450880:five_prime_UTR 35.0%
!! ATTTTGGTGCAAATAGGTAC+TGG + chr3_3:37317441-37317460 Msa0450880:intron 35.0%
CAATCAAAAGAAGCAACCTA+CGG + chr3_3:37317540-37317559 Msa0450880:CDS 35.0%
AATCAAAAGAAGCAACCTAC+GGG + chr3_3:37317541-37317560 Msa0450880:CDS 35.0%
AAGGTGGAAGTTCAGATAAA+AGG - chr3_3:37317898-37317917 None:intergenic 35.0%
TTGAAAGACTCGACATTACA+AGG - chr3_3:37317917-37317936 None:intergenic 35.0%
TGTTCAGGAATTTCCTATGT+CGG + chr3_3:37317967-37317986 Msa0450880:CDS 35.0%
CAAAGAAACAACGATTTGTG+TGG + chr3_3:37318025-37318044 Msa0450880:CDS 35.0%
!!! ATTTTTGACTTGTTCAGGCT+CGG - chr3_3:37318284-37318303 None:intergenic 35.0%
ATGTTCAGAGAACAATTCCT+CGG + chr3_3:37318305-37318324 Msa0450880:CDS 35.0%
GTCATGACTTCTAGTAGATA+AGG - chr3_3:37318416-37318435 None:intergenic 35.0%
CTAGAAGTCATGACAAAAAG+AGG + chr3_3:37318422-37318441 Msa0450880:CDS 35.0%
TGACAAAAAGAGGAAAGTGA+TGG + chr3_3:37318432-37318451 Msa0450880:CDS 35.0%
AAACATCGGTCTATCTAGAA+AGG - chr3_3:37318693-37318712 None:intergenic 35.0%
!!! TGCGCTTACAAAAAGTGTTT+TGG + chr3_3:37318723-37318742 Msa0450880:intron 35.0%
!!! GTTTTGGTTTATTGATGCAG+AGG + chr3_3:37318739-37318758 Msa0450880:intron 35.0%
TATACACGGTTAAATTGACG+CGG - chr3_3:37318926-37318945 None:intergenic 35.0%
ATCACTTCAGTTACAACTTC+AGG + chr3_3:37319065-37319084 Msa0450880:CDS 35.0%
GATCTTTCTGTTAGGTAATG+TGG + chr3_3:37319157-37319176 Msa0450880:intron 35.0%
TTTCTGTTAGGTAATGTGGA+TGG + chr3_3:37319161-37319180 Msa0450880:intron 35.0%
TTCTGTTAGGTAATGTGGAT+GGG + chr3_3:37319162-37319181 Msa0450880:intron 35.0%
TCAGCACTATATGTCACAAA+TGG + chr3_3:37319218-37319237 Msa0450880:CDS 35.0%
CAGCACTATATGTCACAAAT+GGG + chr3_3:37319219-37319238 Msa0450880:CDS 35.0%
CTATATGTCACAAATGGGTA+TGG + chr3_3:37319224-37319243 Msa0450880:CDS 35.0%
!! AATTGCATCGGATTTTGAAG+TGG - chr3_3:37319273-37319292 None:intergenic 35.0%
!! CATCTGATTTTGGTAGTTGA+AGG - chr3_3:37319379-37319398 None:intergenic 35.0%
! CAGGATTTTGCATCTGATTT+TGG - chr3_3:37319389-37319408 None:intergenic 35.0%
TCTTATGCAAAATGCTTCTC+AGG + chr3_3:37319446-37319465 Msa0450880:CDS 35.0%
AAAATGCTTCTCAGGTACTT+GGG + chr3_3:37319454-37319473 Msa0450880:intron 35.0%
AGTCTCTCAAGTGTTTATGT+CGG - chr3_3:37319510-37319529 None:intergenic 35.0%
CTCCCCTTATAATTTACCTA+TGG + chr3_3:37319720-37319739 Msa0450880:intron 35.0%
! TGACTATTTTGTACAGCTTG+GGG - chr3_3:37319808-37319827 None:intergenic 35.0%
AGCAAACATTAATGATGCTG+TGG + chr3_3:37319873-37319892 Msa0450880:CDS 35.0%
GCAAACATTAATGATGCTGT+GGG + chr3_3:37319874-37319893 Msa0450880:CDS 35.0%
! GACAATAGAGAAGTATGTGT+TGG - chr3_3:37319916-37319935 None:intergenic 35.0%
!! GGCAAACATATTTTTGTTGC+TGG - chr3_3:37320133-37320152 None:intergenic 35.0%
GCAAGTGTTCAAGGAAATAA+GGG - chr3_3:37320497-37320516 None:intergenic 35.0%
CTCACACTTTCCAAAGCATA+AGG + chr3_3:37316673-37316692 Msa0450880:five_prime_UTR 40.0%
!!! CCTGCTTTTTCTTCTGTGTT+TGG - chr3_3:37316715-37316734 None:intergenic 40.0%
CCAAACACAGAAGAAAAAGC+AGG + chr3_3:37316712-37316731 Msa0450880:five_prime_UTR 40.0%
CATCAGCAAGTCAGAAACAA+AGG + chr3_3:37316778-37316797 Msa0450880:five_prime_UTR 40.0%
! ACCGTTCCTGATTGGAATTT+TGG + chr3_3:37317499-37317518 Msa0450880:CDS 40.0%
CCCAAAATTCCAATCAGGAA+CGG - chr3_3:37317503-37317522 None:intergenic 40.0%
! CCGTTCCTGATTGGAATTTT+GGG + chr3_3:37317500-37317519 Msa0450880:CDS 40.0%
TCACTCCCAAAATTCCAATC+AGG - chr3_3:37317508-37317527 None:intergenic 40.0%
! CGTAGGTTGCTTCTTTTGAT+TGG - chr3_3:37317542-37317561 None:intergenic 40.0%
ATCAAAAGAAGCAACCTACG+GGG + chr3_3:37317542-37317561 Msa0450880:CDS 40.0%
GATCCAACAATACCCTATTG+AGG + chr3_3:37317844-37317863 Msa0450880:CDS 40.0%
!! GATCCTCAATAGGGTATTGT+TGG - chr3_3:37317850-37317869 None:intergenic 40.0%
GTTCAAGTGGATCCTCAATA+GGG - chr3_3:37317859-37317878 None:intergenic 40.0%
TGTTCAAGTGGATCCTCAAT+AGG - chr3_3:37317860-37317879 None:intergenic 40.0%
AAAGACTCGACATTACAAGG+TGG - chr3_3:37317914-37317933 None:intergenic 40.0%
!! AAAGGCGGTTTTGTATTCGT+CGG - chr3_3:37317947-37317966 None:intergenic 40.0%
! TACAAAACCGCCTTTTGTTC+AGG + chr3_3:37317952-37317971 Msa0450880:CDS 40.0%
GGAAATTCCTGAACAAAAGG+CGG - chr3_3:37317962-37317981 None:intergenic 40.0%
! GGAACATGATGATGAAACCT+CGG - chr3_3:37317995-37318014 None:intergenic 40.0%
AACAACGATTTGTGTGGATC+CGG + chr3_3:37318031-37318050 Msa0450880:CDS 40.0%
!! ACAGTTGGTTCGAGTTATTG+CGG + chr3_3:37318187-37318206 Msa0450880:CDS 40.0%
TGCTTACATCTTGATCCTGT+TGG - chr3_3:37318225-37318244 None:intergenic 40.0%
AACAGGATCAAGATGTAAGC+AGG + chr3_3:37318224-37318243 Msa0450880:CDS 40.0%
ACAGGATCAAGATGTAAGCA+GGG + chr3_3:37318225-37318244 Msa0450880:CDS 40.0%
CCAGAAGATGAAGTAAAAGC+AGG - chr3_3:37318361-37318380 None:intergenic 40.0%
!! CCTGCTTTTACTTCATCTTC+TGG + chr3_3:37318358-37318377 Msa0450880:CDS 40.0%
! GCTTTTACTTCATCTTCTGG+TGG + chr3_3:37318361-37318380 Msa0450880:CDS 40.0%
TACTTCATCTTCTGGTGGTT+CGG + chr3_3:37318366-37318385 Msa0450880:CDS 40.0%
GATGGATGTTGAAGATTCAG+TGG + chr3_3:37318450-37318469 Msa0450880:CDS 40.0%
TAAATCAGCCGTGAGGAAAA+AGG + chr3_3:37318588-37318607 Msa0450880:CDS 40.0%
ACTCATACCTCACAGTAGTA+AGG + chr3_3:37318803-37318822 Msa0450880:CDS 40.0%
TGACAAACCTTACTACTGTG+AGG - chr3_3:37318813-37318832 None:intergenic 40.0%
GTTAAATTGACGCGGATTCA+GGG - chr3_3:37318918-37318937 None:intergenic 40.0%
!! CAAAGCATCGATGTTAGAAG+AGG + chr3_3:37319026-37319045 Msa0450880:CDS 40.0%
!! GACATATAGTGCTGATATCC+CGG - chr3_3:37319213-37319232 None:intergenic 40.0%
!!! TTTTGAAGTGGAGGAAAGGA+AGG - chr3_3:37319261-37319280 None:intergenic 40.0%
!! GATTTTGGCACGTTAATGTC+TGG - chr3_3:37319344-37319363 None:intergenic 40.0%
! ACGTGCCAAAATCCTGTTTT+AGG + chr3_3:37319351-37319370 Msa0450880:CDS 40.0%
! AGGCACCTAAAACAGGATTT+TGG - chr3_3:37319359-37319378 None:intergenic 40.0%
!! TAGTTGAAGGCACCTAAAAC+AGG - chr3_3:37319366-37319385 None:intergenic 40.0%
AGACCAATATGCTCGTTACA+TGG + chr3_3:37319416-37319435 Msa0450880:CDS 40.0%
GACCAATATGCTCGTTACAT+GGG + chr3_3:37319417-37319436 Msa0450880:CDS 40.0%
CAAAATGCTTCTCAGGTACT+TGG + chr3_3:37319453-37319472 Msa0450880:intron 40.0%
AAATGCTTCTCAGGTACTTG+GGG + chr3_3:37319455-37319474 Msa0450880:intron 40.0%
!! ATGTTTGCTGTTCCACTCAT+TGG - chr3_3:37319862-37319881 None:intergenic 40.0%
AACATTAATGATGCTGTGGG+TGG + chr3_3:37319877-37319896 Msa0450880:CDS 40.0%
GGAATTCCTAGAAGAACCTA+TGG + chr3_3:37320102-37320121 Msa0450880:three_prime_UTR 40.0%
GTTACTCCATAGGTTCTTCT+AGG - chr3_3:37320111-37320130 None:intergenic 40.0%
! TTTGTTGCTGGTTACTCCAT+AGG - chr3_3:37320121-37320140 None:intergenic 40.0%
GGCAAGTGTTCAAGGAAATA+AGG - chr3_3:37320498-37320517 None:intergenic 40.0%
CTGTGTGTGTCCTTATGCTT+TGG - chr3_3:37316686-37316705 None:intergenic 45.0%
!! GGTGCAAATAGGTACTGGTT+TGG + chr3_3:37317446-37317465 Msa0450880:intron 45.0%
!! GGTACTGGTTTGGTTCAGTT+CGG + chr3_3:37317456-37317475 Msa0450880:intron 45.0%
TGAACAACACCGTTCCTGAT+TGG + chr3_3:37317491-37317510 Msa0450880:CDS 45.0%
ATATTGAACACACACCCCGT+AGG - chr3_3:37317559-37317578 None:intergenic 45.0%
ATAGAAGCTCCACAAGTTCG+TGG - chr3_3:37317679-37317698 None:intergenic 45.0%
ACGAACTTGTGGAGCTTCTA+TGG + chr3_3:37317678-37317697 Msa0450880:CDS 45.0%
CATCTTGATCCTGTTGGACT+TGG - chr3_3:37318219-37318238 None:intergenic 45.0%
! GTAAGCAGGGTATCAAGCAA+CGG + chr3_3:37318238-37318257 Msa0450880:CDS 45.0%
ACAATTCCTCGGCATGAGAA+TGG + chr3_3:37318316-37318335 Msa0450880:CDS 45.0%
CAATTCCTCGGCATGAGAAT+GGG + chr3_3:37318317-37318336 Msa0450880:CDS 45.0%
TCGGCATGAGAATGGGAAAT+CGG + chr3_3:37318324-37318343 Msa0450880:CDS 45.0%
GAATGGGAAATCGGAGATGT+TGG + chr3_3:37318333-37318352 Msa0450880:CDS 45.0%
ACTTCATCTTCTGGTGGTTC+GGG + chr3_3:37318367-37318386 Msa0450880:CDS 45.0%
AGATTCAGTGGAACAAAGCG+AGG + chr3_3:37318462-37318481 Msa0450880:CDS 45.0%
CAGAACTTAAATCAGCCGTG+AGG + chr3_3:37318581-37318600 Msa0450880:CDS 45.0%
GATTATGAACTTCAGCAGCG+CGG - chr3_3:37318645-37318664 None:intergenic 45.0%
GGTTAAATTGACGCGGATTC+AGG - chr3_3:37318919-37318938 None:intergenic 45.0%
TAGGTAATGTGGATGGGATC+TGG + chr3_3:37319168-37319187 Msa0450880:intron 45.0%
TGATATCCCGGTAGCATCAT+CGG - chr3_3:37319201-37319220 None:intergenic 45.0%
!!! CGGATTTTGAAGTGGAGGAA+AGG - chr3_3:37319265-37319284 None:intergenic 45.0%
!!! TGCATCGGATTTTGAAGTGG+AGG - chr3_3:37319270-37319289 None:intergenic 45.0%
GGCATTCTCGGTAATTGCAT+CGG - chr3_3:37319285-37319304 None:intergenic 45.0%
TGGCACGTTAATGTCTGGTT+TGG - chr3_3:37319339-37319358 None:intergenic 45.0%
! GCATATTGGTCTGAAAGAGC+AGG - chr3_3:37319408-37319427 None:intergenic 45.0%
AGCCCATGTAACGAGCATAT+TGG - chr3_3:37319422-37319441 None:intergenic 45.0%
! TCAGGTACTTGGGGTTTGTT+TGG + chr3_3:37319464-37319483 Msa0450880:intron 45.0%
ATTGGTCCACTGCTATTGCT+GGG - chr3_3:37319844-37319863 None:intergenic 45.0%
AATAGCAGTGGACCAATGAG+TGG + chr3_3:37319847-37319866 Msa0450880:CDS 45.0%
GTGGAGCTTCTATGGCAGAA+TGG + chr3_3:37317686-37317705 Msa0450880:CDS 50.0%
!! AATTTCCTATGTCGGCTCCG+AGG + chr3_3:37317975-37317994 Msa0450880:CDS 50.0%
GAGTGTTCGACGATGACAGT+TGG + chr3_3:37318172-37318191 Msa0450880:CDS 50.0%
GGGTATCAAGCAACGGTGTT+TGG + chr3_3:37318245-37318264 Msa0450880:CDS 50.0%
GATTTCCCATTCTCATGCCG+AGG - chr3_3:37318325-37318344 None:intergenic 50.0%
! CTGAGACGCCTTTTTCCTCA+CGG - chr3_3:37318599-37318618 None:intergenic 50.0%
!! TGAGGAAAAAGGCGTCTCAG+CGG + chr3_3:37318599-37318618 Msa0450880:CDS 50.0%
TGATGCAGAGGCGAAGAGAT+AGG + chr3_3:37318751-37318770 Msa0450880:intron 50.0%
CATGACACCGATGATGCTAC+CGG + chr3_3:37319191-37319210 Msa0450880:CDS 50.0%
ATGACACCGATGATGCTACC+GGG + chr3_3:37319192-37319211 Msa0450880:CDS 50.0%
AAGTGGAGGAAAGGAAGGTG+TGG - chr3_3:37319256-37319275 None:intergenic 50.0%
GCAATTACCGAGAATGCCTC+TGG + chr3_3:37319287-37319306 Msa0450880:CDS 50.0%
! GTCTGAGACGAAGAAACGGA+CGG - chr3_3:37319315-37319334 None:intergenic 50.0%
! TGGCGTCTGAGACGAAGAAA+CGG - chr3_3:37319319-37319338 None:intergenic 50.0%
ATTCCACCCAGCAATAGCAG+TGG + chr3_3:37319835-37319854 Msa0450880:CDS 50.0%
CATTGGTCCACTGCTATTGC+TGG - chr3_3:37319845-37319864 None:intergenic 50.0%
TGATGCTGTGGGTGGCAAAA+TGG + chr3_3:37319885-37319904 Msa0450880:CDS 50.0%
GATGCTGTGGGTGGCAAAAT+GGG + chr3_3:37319886-37319905 Msa0450880:CDS 50.0%
! CAGGTTGGACCACGAACTTG+TGG + chr3_3:37317667-37317686 Msa0450880:intron 55.0%
TGAAACCTCGGAGCCGACAT+AGG - chr3_3:37317983-37318002 None:intergenic 55.0%
CGATTTGTGTGGATCCGGCA+AGG + chr3_3:37318036-37318055 Msa0450880:CDS 55.0%
CGGAAGCAACCAAGTCCAAC+AGG + chr3_3:37318207-37318226 Msa0450880:CDS 55.0%
! GGTGGTTCGGGAAGTAGTCT+TGG + chr3_3:37318379-37318398 Msa0450880:CDS 55.0%
!! AAAAAGGCGTCTCAGCGGTC+AGG + chr3_3:37318604-37318623 Msa0450880:CDS 55.0%
!! AAAAGGCGTCTCAGCGGTCA+GGG + chr3_3:37318605-37318624 Msa0450880:CDS 55.0%
!! GACGGATCCAGAGGCATTCT+CGG - chr3_3:37319297-37319316 None:intergenic 55.0%
GAAGAAACGGACGGATCCAG+AGG - chr3_3:37319306-37319325 None:intergenic 55.0%
CTGTGGGTGGCAAAATGGGT+AGG + chr3_3:37319890-37319909 Msa0450880:CDS 55.0%
GGTCCACTGCTATTGCTGGG+TGG - chr3_3:37319841-37319860 None:intergenic 60.0%
GGCGTCTCAGCGGTCAGGGT+CGG + chr3_3:37318609-37318628 Msa0450880:CDS 70.0%
!! AGCGGTCAGGGTCGGCTCGT+AGG + chr3_3:37318617-37318636 Msa0450880:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 37316661 37320522 37316661 ID=Msa0450880;Name=Msa0450880
chr3_3 mRNA 37316661 37320522 37316661 ID=Msa0450880-mRNA-1;Parent=Msa0450880;Name=Msa0450880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=208|1|1|1|0.85|0.75|8|583|524
chr3_3 exon 37316661 37316835 37316661 ID=Msa0450880-mRNA-1:exon:6767;Parent=Msa0450880-mRNA-1
chr3_3 exon 37317457 37317563 37317457 ID=Msa0450880-mRNA-1:exon:6768;Parent=Msa0450880-mRNA-1
chr3_3 exon 37317670 37318483 37317670 ID=Msa0450880-mRNA-1:exon:6769;Parent=Msa0450880-mRNA-1
chr3_3 exon 37318577 37318675 37318577 ID=Msa0450880-mRNA-1:exon:6770;Parent=Msa0450880-mRNA-1
chr3_3 exon 37318759 37318824 37318759 ID=Msa0450880-mRNA-1:exon:6771;Parent=Msa0450880-mRNA-1
chr3_3 exon 37319021 37319086 37319021 ID=Msa0450880-mRNA-1:exon:6772;Parent=Msa0450880-mRNA-1
chr3_3 exon 37319171 37319467 37319171 ID=Msa0450880-mRNA-1:exon:6773;Parent=Msa0450880-mRNA-1
chr3_3 exon 37319781 37320522 37319781 ID=Msa0450880-mRNA-1:exon:6774;Parent=Msa0450880-mRNA-1
chr3_3 five_prime_UTR 37316661 37316835 37316661 ID=Msa0450880-mRNA-1:five_prime_utr;Parent=Msa0450880-mRNA-1
chr3_3 five_prime_UTR 37317457 37317489 37317457 ID=Msa0450880-mRNA-1:five_prime_utr;Parent=Msa0450880-mRNA-1
chr3_3 CDS 37317490 37317563 37317490 ID=Msa0450880-mRNA-1:cds;Parent=Msa0450880-mRNA-1
chr3_3 CDS 37317670 37318483 37317670 ID=Msa0450880-mRNA-1:cds;Parent=Msa0450880-mRNA-1
chr3_3 CDS 37318577 37318675 37318577 ID=Msa0450880-mRNA-1:cds;Parent=Msa0450880-mRNA-1
chr3_3 CDS 37318759 37318824 37318759 ID=Msa0450880-mRNA-1:cds;Parent=Msa0450880-mRNA-1
chr3_3 CDS 37319021 37319086 37319021 ID=Msa0450880-mRNA-1:cds;Parent=Msa0450880-mRNA-1
chr3_3 CDS 37319171 37319467 37319171 ID=Msa0450880-mRNA-1:cds;Parent=Msa0450880-mRNA-1
chr3_3 CDS 37319781 37319939 37319781 ID=Msa0450880-mRNA-1:cds;Parent=Msa0450880-mRNA-1
chr3_3 three_prime_UTR 37319940 37320522 37319940 ID=Msa0450880-mRNA-1:three_prime_utr;Parent=Msa0450880-mRNA-1
Gene Sequence

>Msa0450880

ATGAACAACACCGTTCCTGATTGGAATTTTGGGAGTGATAGTTTTGTCACCAATCAAAAGAAGCAACCTACGGGGTTGGACCACGAACTTGTGGAGCTTCTATGGCAGAATGGTCAAGTAGTATTGAATAGCCAAACAAATAAGAAACAAGTTCTGAATTCAAATACAATCAATTCAAGACAAGTTCATAAGAATCTTCAATCAACAACTTTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAACCTTTTATCTGAACTTCCACCTTGTAATGTCGAGTCTTTCAATTCGCAACCGACGAATACAAAACCGCCTTTTGTTCAGGAATTTCCTATGTCGGCTCCGAGGTTTCATCATCATGTTCCCGATTCATTGCAAAGAAACAACGATTTGTGTGGATCCGGCAAGGTTGTAAATTTTTCTCACTTTTCAAGACTTCCCAATGTTACTTTAGCATCTACAAACGGCGATGCAAATTTTAGAGACAAAATTACGGGTAATCTGTCACAATGTGATGTTAGAGAGTGTTCGACGATGACAGTTGGTTCGAGTTATTGCGGAAGCAACCAAGTCCAACAGGATCAAGATGTAAGCAGGGTATCAAGCAACGGTGTTTGGACTAATTTATCGACCGAGCCTGAACAAGTCAAAAATGATGTTCAGAGAACAATTCCTCGGCATGAGAATGGGAAATCGGAGATGTTGGAACCTGCTTTTACTTCATCTTCTGGTGGTTCGGGAAGTAGTCTTGGAAAAACTTGTTCCTTATCTACTAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAGTGGAACAAAGCGAGGATACAGAACTTAAATCAGCCGTGAGGAAAAAGGCGTCTCAGCGGTCAGGGTCGGCTCGTAGGAACCGCGCTGCTGAAGTTCATAATCTTTCAGAAAGGAGGCGAAGAGATAGGATTAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCGATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGACACCGATGATGCTACCGGGATATCAGCACTATATGTCACAAATGGGTATGGGAATGACCACACCTTCCTTTCCTCCACTTCAAAATCCGATGCAATTACCGAGAATGCCTCTGGATCCGTCCGTTTCTTCGTCTCAGACGCCAAACCAGACATTAACGTGCCAAAATCCTGTTTTAGGTGCCTTCAACTACCAAAATCAGATGCAAAATCCTGCTCTTTCAGACCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCACCCAGCAATAGCAGTGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTGGGTGGCAAAATGGGTAGGCCAACACATACTTCTCTATTGTCATAG
Protein sequence

>Msa0450880

MNNTVPDWNFGSDSFVTNQKKQPTGLDHELVELLWQNGQVVLNSQTNKKQVLNSNTINSRQVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPLEQELCSNLLSELPPCNVESFNSQPTNTKPPFVQEFPMSAPRFHHHVPDSLQRNNDLCGSGKVVNFSHFSRLPNVTLASTNGDANFRDKITGNLSQCDVRECSTMTVGSSYCGSNQVQQDQDVSRVSSNGVWTNLSTEPEQVKNDVQRTIPRHENGKSEMLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSVEQSEDTELKSAVRKKASQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHYMSQMGMGMTTPSFPPLQNPMQLPRMPLDPSVSSSQTPNQTLTCQNPVLGAFNYQNQMQNPALSDQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPPSNSSGPMSGTANINDAVGGKMGRPTHTSLLS*