AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1390330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390330 MtrunA17_Chr1g0190751 92.086 139 8 1 1 136 1 139 1.46e-74 218
Msa1390330 MtrunA17_Chr7g0274161 70.707 99 24 2 43 136 46 144 6.46e-41 133
Msa1390330 MtrunA17_Chr1g0202801 40.260 77 45 1 45 121 75 150 6.06e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390330 AT5G28750.1 59.048 105 38 2 33 132 38 142 8.80e-37 123
Msa1390330 AT5G52440.1 52.083 48 23 0 56 103 85 132 3.69e-11 59.3

Find 47 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTTTGTGCTTCTGTTTC+TGG 0.042249 tig0021333:-111335 None:intergenic
CCAACTTCGGGCAATTTCTT+AGG 0.195754 tig0021333:-111436 None:intergenic
TGTGCTTCTGTTTCTGGTTC+TGG 0.214291 tig0021333:-111329 None:intergenic
CATTATTGTCTTGATCTTCT+TGG 0.219177 tig0021333:-111868 None:intergenic
GAAATTTCTTCAGTAGAATT+AGG 0.222712 tig0021333:-111833 None:intergenic
AACGGTAATGATTAAAATTA+AGG 0.240068 tig0021333:+112223 Msa1390330:three_prime_UTR
CCCGAGCTTGTTGTTATTGC+AGG 0.253511 tig0021333:+111391 Msa1390330:CDS
TTTGGTTTGATTCTATTTGC+TGG 0.281151 tig0021333:-111181 None:intergenic
CGGTTGTTAGTTTGCGGATT+GGG 0.319646 tig0021333:-111120 None:intergenic
GCCGATGCTGCGACCAACTT+CGG 0.342708 tig0021333:-111449 None:intergenic
TTTACTTGCAACGCCTTCTT+CGG 0.349544 tig0021333:+111358 Msa1390330:CDS
AAGTGATGTATTGTTAGAAT+TGG 0.354759 tig0021333:-111293 None:intergenic
CCGATGCTGCGACCAACTTC+GGG 0.355688 tig0021333:-111448 None:intergenic
TAAGAAGGATAAGGTGGAAT+AGG 0.383721 tig0021333:-111266 None:intergenic
GTTAGAATTGGAAGCTAAGA+AGG 0.407354 tig0021333:-111281 None:intergenic
GTGGAATAGGATGAAGAGAT+TGG 0.421445 tig0021333:-111253 None:intergenic
GCGAATTAAAGAAGAAGAAA+GGG 0.424605 tig0021333:-111221 None:intergenic
CTTCTTCTTTAATTCGCCCT+AGG 0.426973 tig0021333:+111227 Msa1390330:CDS
CACCCACGGTTGTTAGTTTG+CGG 0.437480 tig0021333:-111126 None:intergenic
GGCGAATTAAAGAAGAAGAA+AGG 0.452383 tig0021333:-111222 None:intergenic
AACTGTCAAAAGCTTCCAAC+AGG 0.455252 tig0021333:+111474 Msa1390330:CDS
CCCGAAGTTGGTCGCAGCAT+CGG 0.463383 tig0021333:+111448 Msa1390330:CDS
ACGGTTGTTAGTTTGCGGAT+TGG 0.466644 tig0021333:-111121 None:intergenic
CCTAAGAAATTGCCCGAAGT+TGG 0.474122 tig0021333:+111436 Msa1390330:CDS
AAAATTAGTTGTTGATTCAG+TGG 0.476662 tig0021333:+112192 Msa1390330:three_prime_UTR
ATTGGAAGCTAAGAAGGATA+AGG 0.493246 tig0021333:-111275 None:intergenic
TGTTAGTTTGCGGATTGGGT+GGG 0.510064 tig0021333:-111116 None:intergenic
TGAAACCTTGTAGGCAGCAA+AGG 0.513076 tig0021333:+111784 Msa1390330:intron
TTGTTAGTTTGCGGATTGGG+TGG 0.519809 tig0021333:-111117 None:intergenic
TGCAACGCCTTCTTCGGATT+AGG 0.521226 tig0021333:+111364 Msa1390330:CDS
TTTCTTCTTCGTGGTAGTTG+AGG 0.532506 tig0021333:+112025 Msa1390330:three_prime_UTR
TCCTGCAATAACAACAAGCT+CGG 0.534091 tig0021333:-111392 None:intergenic
CAATAATGTTTCTAGTACAA+AGG 0.541741 tig0021333:+111883 Msa1390330:CDS
ATGAAGAGATTGGAAGCCTA+GGG 0.550257 tig0021333:-111243 None:intergenic
GATGAAGAGATTGGAAGCCT+AGG 0.550349 tig0021333:-111244 None:intergenic
CCTGCAATAACAACAAGCTC+GGG 0.555493 tig0021333:-111391 None:intergenic
AGGTAGTTAAAGAATAATTG+AGG 0.559563 tig0021333:+112078 Msa1390330:three_prime_UTR
GGAAGCTAAGAAGGATAAGG+TGG 0.578078 tig0021333:-111272 None:intergenic
GCTGGTTTCTGCTAAATGAG+TGG 0.591161 tig0021333:-111163 None:intergenic
GATTCAGTGGATTAGACCAA+CGG 0.606736 tig0021333:+112205 Msa1390330:three_prime_UTR
GGGCACGCCTAATCCGAAGA+AGG 0.614059 tig0021333:-111371 None:intergenic
TGTTACAAGGAACATGCGGT+AGG 0.633411 tig0021333:+112058 Msa1390330:three_prime_UTR
TTCTTAATAAAATTGTACCA+TGG 0.641755 tig0021333:+111943 Msa1390330:three_prime_UTR
AATCCGCAAACTAACAACCG+TGG 0.641967 tig0021333:+111123 Msa1390330:five_prime_UTR
ATCCGCAAACTAACAACCGT+GGG 0.642536 tig0021333:+111124 Msa1390330:five_prime_UTR
GTTCTAAATGCATAACACCA+TGG 0.652008 tig0021333:-111960 None:intergenic
ATAACAATTATCAACACCCA+CGG 0.688626 tig0021333:-111140 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTGAAATTGTTTTAT+AGG + tig0021333:111652-111671 Msa1390330:intron 10.0%
!!! TAAAATTGAAATTGTTTTAT+AGG + tig0021333:111652-111671 Msa1390330:intron 10.0%
!!! CAAATTTTTATTGTTTGTTT+GGG + tig0021333:111746-111765 Msa1390330:intron 15.0%
!!! ATCAACAACTAATTTTTTAA+AGG - tig0021333:112188-112207 None:intergenic 15.0%
!!! CAAATTTTTATTGTTTGTTT+GGG + tig0021333:111746-111765 Msa1390330:intron 15.0%
!!! ATCAACAACTAATTTTTTAA+AGG - tig0021333:112188-112207 None:intergenic 15.0%
!! AAATAGAATCAAACCAAAAA+TGG + tig0021333:111186-111205 Msa1390330:exon 20.0%
!! GCAATTTCTTATCTAATTAA+CGG + tig0021333:111573-111592 Msa1390330:intron 20.0%
!!! GTTTTTAATAATTCAGTTGA+AGG + tig0021333:111720-111739 Msa1390330:intron 20.0%
!!! GCAAATTTTTATTGTTTGTT+TGG + tig0021333:111745-111764 Msa1390330:intron 20.0%
!! TTCTTAATAAAATTGTACCA+TGG + tig0021333:111943-111962 Msa1390330:three_prime_UTR 20.0%
!!! ATCAACAACTATTTTTTGAA+AGG - tig0021333:112160-112179 None:intergenic 20.0%
!!! TTAATTTTAATCATTACCGT+TGG - tig0021333:112224-112243 None:intergenic 20.0%
!! AACGGTAATGATTAAAATTA+AGG + tig0021333:112223-112242 Msa1390330:three_prime_UTR 20.0%
!! AAATAGAATCAAACCAAAAA+TGG + tig0021333:111186-111205 Msa1390330:exon 20.0%
!! GCAATTTCTTATCTAATTAA+CGG + tig0021333:111573-111592 Msa1390330:intron 20.0%
!!! GTTTTTAATAATTCAGTTGA+AGG + tig0021333:111720-111739 Msa1390330:intron 20.0%
!!! GCAAATTTTTATTGTTTGTT+TGG + tig0021333:111745-111764 Msa1390330:intron 20.0%
!! TTCTTAATAAAATTGTACCA+TGG + tig0021333:111943-111962 Msa1390330:three_prime_UTR 20.0%
!!! ATCAACAACTATTTTTTGAA+AGG - tig0021333:112160-112179 None:intergenic 20.0%
!!! TTAATTTTAATCATTACCGT+TGG - tig0021333:112224-112243 None:intergenic 20.0%
!! AACGGTAATGATTAAAATTA+AGG + tig0021333:112223-112242 Msa1390330:three_prime_UTR 20.0%
! AAGTGATGTATTGTTAGAAT+TGG - tig0021333:111296-111315 None:intergenic 25.0%
! TTATCCTAAGAATGAGAAAA+TGG - tig0021333:111502-111521 None:intergenic 25.0%
!!! ATTAGATTTTGAAACCTTGT+AGG + tig0021333:111775-111794 Msa1390330:intron 25.0%
!!! ATTAGGTTCCTTTTTTAACT+CGG - tig0021333:111819-111838 None:intergenic 25.0%
! GAAATTTCTTCAGTAGAATT+AGG - tig0021333:111836-111855 None:intergenic 25.0%
!!! CAATAATGTTTCTAGTACAA+AGG + tig0021333:111883-111902 Msa1390330:CDS 25.0%
! ATGTTCCTTGTAACAAAAAA+AGG - tig0021333:112053-112072 None:intergenic 25.0%
! AGGTAGTTAAAGAATAATTG+AGG + tig0021333:112078-112097 Msa1390330:three_prime_UTR 25.0%
!!! AAAATTAGTTGTTGATTCAG+TGG + tig0021333:112192-112211 Msa1390330:three_prime_UTR 25.0%
! AAGTGATGTATTGTTAGAAT+TGG - tig0021333:111296-111315 None:intergenic 25.0%
! TTATCCTAAGAATGAGAAAA+TGG - tig0021333:111502-111521 None:intergenic 25.0%
!!! ATTAGATTTTGAAACCTTGT+AGG + tig0021333:111775-111794 Msa1390330:intron 25.0%
!!! ATTAGGTTCCTTTTTTAACT+CGG - tig0021333:111819-111838 None:intergenic 25.0%
! GAAATTTCTTCAGTAGAATT+AGG - tig0021333:111836-111855 None:intergenic 25.0%
!!! CAATAATGTTTCTAGTACAA+AGG + tig0021333:111883-111902 Msa1390330:CDS 25.0%
! ATGTTCCTTGTAACAAAAAA+AGG - tig0021333:112053-112072 None:intergenic 25.0%
! AGGTAGTTAAAGAATAATTG+AGG + tig0021333:112078-112097 Msa1390330:three_prime_UTR 25.0%
!!! AAAATTAGTTGTTGATTCAG+TGG + tig0021333:112192-112211 Msa1390330:three_prime_UTR 25.0%
ATAACAATTATCAACACCCA+CGG - tig0021333:111143-111162 None:intergenic 30.0%
!! TTTGGTTTGATTCTATTTGC+TGG - tig0021333:111184-111203 None:intergenic 30.0%
GCGAATTAAAGAAGAAGAAA+GGG - tig0021333:111224-111243 None:intergenic 30.0%
!! ATTTGTTGTGCCTAACATAT+AGG + tig0021333:111538-111557 Msa1390330:intron 30.0%
ATGTAGAACTCCTATATGTT+AGG - tig0021333:111551-111570 None:intergenic 30.0%
TCATTCGTTGTATTTGAATG+AGG + tig0021333:111696-111715 Msa1390330:intron 30.0%
CATTATTGTCTTGATCTTCT+TGG - tig0021333:111871-111890 None:intergenic 30.0%
!!! TCTCTTATTTTTCTTCTTCG+TGG + tig0021333:112016-112035 Msa1390330:three_prime_UTR 30.0%
!!! AGGTACCTTTTTTTGTTACA+AGG + tig0021333:112045-112064 Msa1390330:three_prime_UTR 30.0%
! TTTTTGTTACAAGGAACATG+CGG + tig0021333:112054-112073 Msa1390330:three_prime_UTR 30.0%
AAAAAGCTTCGAATTGCTTT+GGG - tig0021333:112111-112130 None:intergenic 30.0%
AAAAAAGCTTCGAATTGCTT+TGG - tig0021333:112112-112131 None:intergenic 30.0%
ATAACAATTATCAACACCCA+CGG - tig0021333:111143-111162 None:intergenic 30.0%
!! TTTGGTTTGATTCTATTTGC+TGG - tig0021333:111184-111203 None:intergenic 30.0%
GCGAATTAAAGAAGAAGAAA+GGG - tig0021333:111224-111243 None:intergenic 30.0%
!! ATTTGTTGTGCCTAACATAT+AGG + tig0021333:111538-111557 Msa1390330:intron 30.0%
ATGTAGAACTCCTATATGTT+AGG - tig0021333:111551-111570 None:intergenic 30.0%
TCATTCGTTGTATTTGAATG+AGG + tig0021333:111696-111715 Msa1390330:intron 30.0%
CATTATTGTCTTGATCTTCT+TGG - tig0021333:111871-111890 None:intergenic 30.0%
!!! TCTCTTATTTTTCTTCTTCG+TGG + tig0021333:112016-112035 Msa1390330:three_prime_UTR 30.0%
!!! AGGTACCTTTTTTTGTTACA+AGG + tig0021333:112045-112064 Msa1390330:three_prime_UTR 30.0%
! TTTTTGTTACAAGGAACATG+CGG + tig0021333:112054-112073 Msa1390330:three_prime_UTR 30.0%
AAAAAGCTTCGAATTGCTTT+GGG - tig0021333:112111-112130 None:intergenic 30.0%
AAAAAAGCTTCGAATTGCTT+TGG - tig0021333:112112-112131 None:intergenic 30.0%
! ACTGTGTCAAGAGTTTTCAA+TGG - tig0021333:111096-111115 None:intergenic 35.0%
!!! GAAAGTGTTGTCTCCATTTT+TGG - tig0021333:111202-111221 None:intergenic 35.0%
GGCGAATTAAAGAAGAAGAA+AGG - tig0021333:111225-111244 None:intergenic 35.0%
TAAGAAGGATAAGGTGGAAT+AGG - tig0021333:111269-111288 None:intergenic 35.0%
ATTGGAAGCTAAGAAGGATA+AGG - tig0021333:111278-111297 None:intergenic 35.0%
GTTAGAATTGGAAGCTAAGA+AGG - tig0021333:111284-111303 None:intergenic 35.0%
AATGAGAAAATGGAACCTGT+TGG - tig0021333:111492-111511 None:intergenic 35.0%
! GGTTCCATTTTCTCATTCTT+AGG + tig0021333:111495-111514 Msa1390330:intron 35.0%
! GTTTGAGACCGAGTTAAAAA+AGG + tig0021333:111808-111827 Msa1390330:CDS 35.0%
! GTTCTAAATGCATAACACCA+TGG - tig0021333:111963-111982 None:intergenic 35.0%
!!! GAAGCTTTTTTCTTTGAAGC+AGG + tig0021333:112121-112140 Msa1390330:three_prime_UTR 35.0%
! ACTGTGTCAAGAGTTTTCAA+TGG - tig0021333:111096-111115 None:intergenic 35.0%
!!! GAAAGTGTTGTCTCCATTTT+TGG - tig0021333:111202-111221 None:intergenic 35.0%
GGCGAATTAAAGAAGAAGAA+AGG - tig0021333:111225-111244 None:intergenic 35.0%
TAAGAAGGATAAGGTGGAAT+AGG - tig0021333:111269-111288 None:intergenic 35.0%
ATTGGAAGCTAAGAAGGATA+AGG - tig0021333:111278-111297 None:intergenic 35.0%
GTTAGAATTGGAAGCTAAGA+AGG - tig0021333:111284-111303 None:intergenic 35.0%
AATGAGAAAATGGAACCTGT+TGG - tig0021333:111492-111511 None:intergenic 35.0%
! GGTTCCATTTTCTCATTCTT+AGG + tig0021333:111495-111514 Msa1390330:intron 35.0%
! GTTTGAGACCGAGTTAAAAA+AGG + tig0021333:111808-111827 Msa1390330:CDS 35.0%
! GTTCTAAATGCATAACACCA+TGG - tig0021333:111963-111982 None:intergenic 35.0%
!!! GAAGCTTTTTTCTTTGAAGC+AGG + tig0021333:112121-112140 Msa1390330:three_prime_UTR 35.0%
CTTCTTCTTTAATTCGCCCT+AGG + tig0021333:111227-111246 Msa1390330:CDS 40.0%
ATGAAGAGATTGGAAGCCTA+GGG - tig0021333:111246-111265 None:intergenic 40.0%
GTGGAATAGGATGAAGAGAT+TGG - tig0021333:111256-111275 None:intergenic 40.0%
TTTACTTGCAACGCCTTCTT+CGG + tig0021333:111358-111377 Msa1390330:CDS 40.0%
TCCTGCAATAACAACAAGCT+CGG - tig0021333:111395-111414 None:intergenic 40.0%
AACTGTCAAAAGCTTCCAAC+AGG + tig0021333:111474-111493 Msa1390330:CDS 40.0%
TTTCTTCTTCGTGGTAGTTG+AGG + tig0021333:112025-112044 Msa1390330:three_prime_UTR 40.0%
!! GATTCAGTGGATTAGACCAA+CGG + tig0021333:112205-112224 Msa1390330:three_prime_UTR 40.0%
CTTCTTCTTTAATTCGCCCT+AGG + tig0021333:111227-111246 Msa1390330:CDS 40.0%
ATGAAGAGATTGGAAGCCTA+GGG - tig0021333:111246-111265 None:intergenic 40.0%
GTGGAATAGGATGAAGAGAT+TGG - tig0021333:111256-111275 None:intergenic 40.0%
TTTACTTGCAACGCCTTCTT+CGG + tig0021333:111358-111377 Msa1390330:CDS 40.0%
TCCTGCAATAACAACAAGCT+CGG - tig0021333:111395-111414 None:intergenic 40.0%
AACTGTCAAAAGCTTCCAAC+AGG + tig0021333:111474-111493 Msa1390330:CDS 40.0%
TTTCTTCTTCGTGGTAGTTG+AGG + tig0021333:112025-112044 Msa1390330:three_prime_UTR 40.0%
!! GATTCAGTGGATTAGACCAA+CGG + tig0021333:112205-112224 Msa1390330:three_prime_UTR 40.0%
!! TGTTAGTTTGCGGATTGGGT+GGG - tig0021333:111119-111138 None:intergenic 45.0%
!! TTGTTAGTTTGCGGATTGGG+TGG - tig0021333:111120-111139 None:intergenic 45.0%
!! CGGTTGTTAGTTTGCGGATT+GGG - tig0021333:111123-111142 None:intergenic 45.0%
!! ACGGTTGTTAGTTTGCGGAT+TGG - tig0021333:111124-111143 None:intergenic 45.0%
AATCCGCAAACTAACAACCG+TGG + tig0021333:111123-111142 Msa1390330:five_prime_UTR 45.0%
ATCCGCAAACTAACAACCGT+GGG + tig0021333:111124-111143 Msa1390330:five_prime_UTR 45.0%
! GCTGGTTTCTGCTAAATGAG+TGG - tig0021333:111166-111185 None:intergenic 45.0%
GATGAAGAGATTGGAAGCCT+AGG - tig0021333:111247-111266 None:intergenic 45.0%
GGAAGCTAAGAAGGATAAGG+TGG - tig0021333:111275-111294 None:intergenic 45.0%
!! TGTGCTTCTGTTTCTGGTTC+TGG - tig0021333:111332-111351 None:intergenic 45.0%
ACGCTTTGTGCTTCTGTTTC+TGG - tig0021333:111338-111357 None:intergenic 45.0%
CCTGCAATAACAACAAGCTC+GGG - tig0021333:111394-111413 None:intergenic 45.0%
CCAACTTCGGGCAATTTCTT+AGG - tig0021333:111439-111458 None:intergenic 45.0%
CCTAAGAAATTGCCCGAAGT+TGG + tig0021333:111436-111455 Msa1390330:CDS 45.0%
TGAAACCTTGTAGGCAGCAA+AGG + tig0021333:111784-111803 Msa1390330:intron 45.0%
AAACTCCTTTGCTGCCTACA+AGG - tig0021333:111792-111811 None:intergenic 45.0%
TGTTACAAGGAACATGCGGT+AGG + tig0021333:112058-112077 Msa1390330:three_prime_UTR 45.0%
!! TGTTAGTTTGCGGATTGGGT+GGG - tig0021333:111119-111138 None:intergenic 45.0%
!! TTGTTAGTTTGCGGATTGGG+TGG - tig0021333:111120-111139 None:intergenic 45.0%
!! CGGTTGTTAGTTTGCGGATT+GGG - tig0021333:111123-111142 None:intergenic 45.0%
!! ACGGTTGTTAGTTTGCGGAT+TGG - tig0021333:111124-111143 None:intergenic 45.0%
AATCCGCAAACTAACAACCG+TGG + tig0021333:111123-111142 Msa1390330:five_prime_UTR 45.0%
ATCCGCAAACTAACAACCGT+GGG + tig0021333:111124-111143 Msa1390330:five_prime_UTR 45.0%
! GCTGGTTTCTGCTAAATGAG+TGG - tig0021333:111166-111185 None:intergenic 45.0%
GATGAAGAGATTGGAAGCCT+AGG - tig0021333:111247-111266 None:intergenic 45.0%
GGAAGCTAAGAAGGATAAGG+TGG - tig0021333:111275-111294 None:intergenic 45.0%
!! TGTGCTTCTGTTTCTGGTTC+TGG - tig0021333:111332-111351 None:intergenic 45.0%
ACGCTTTGTGCTTCTGTTTC+TGG - tig0021333:111338-111357 None:intergenic 45.0%
CCTGCAATAACAACAAGCTC+GGG - tig0021333:111394-111413 None:intergenic 45.0%
CCAACTTCGGGCAATTTCTT+AGG - tig0021333:111439-111458 None:intergenic 45.0%
CCTAAGAAATTGCCCGAAGT+TGG + tig0021333:111436-111455 Msa1390330:CDS 45.0%
TGAAACCTTGTAGGCAGCAA+AGG + tig0021333:111784-111803 Msa1390330:intron 45.0%
AAACTCCTTTGCTGCCTACA+AGG - tig0021333:111792-111811 None:intergenic 45.0%
TGTTACAAGGAACATGCGGT+AGG + tig0021333:112058-112077 Msa1390330:three_prime_UTR 45.0%
! CACCCACGGTTGTTAGTTTG+CGG - tig0021333:111129-111148 None:intergenic 50.0%
TGCAACGCCTTCTTCGGATT+AGG + tig0021333:111364-111383 Msa1390330:CDS 50.0%
!! CCCGAGCTTGTTGTTATTGC+AGG + tig0021333:111391-111410 Msa1390330:CDS 50.0%
!!! GGAGTCGCTGCTCTTGTTTT+CGG + tig0021333:111412-111431 Msa1390330:CDS 50.0%
! CACCCACGGTTGTTAGTTTG+CGG - tig0021333:111129-111148 None:intergenic 50.0%
TGCAACGCCTTCTTCGGATT+AGG + tig0021333:111364-111383 Msa1390330:CDS 50.0%
!! CCCGAGCTTGTTGTTATTGC+AGG + tig0021333:111391-111410 Msa1390330:CDS 50.0%
!!! GGAGTCGCTGCTCTTGTTTT+CGG + tig0021333:111412-111431 Msa1390330:CDS 50.0%
GGGCACGCCTAATCCGAAGA+AGG - tig0021333:111374-111393 None:intergenic 60.0%
CCGATGCTGCGACCAACTTC+GGG - tig0021333:111451-111470 None:intergenic 60.0%
! CCCGAAGTTGGTCGCAGCAT+CGG + tig0021333:111448-111467 Msa1390330:CDS 60.0%
GCCGATGCTGCGACCAACTT+CGG - tig0021333:111452-111471 None:intergenic 60.0%
GGGCACGCCTAATCCGAAGA+AGG - tig0021333:111374-111393 None:intergenic 60.0%
CCGATGCTGCGACCAACTTC+GGG - tig0021333:111451-111470 None:intergenic 60.0%
! CCCGAAGTTGGTCGCAGCAT+CGG + tig0021333:111448-111467 Msa1390330:CDS 60.0%
GCCGATGCTGCGACCAACTT+CGG - tig0021333:111452-111471 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021333 gene 111068 112251 111068 ID=Msa1390330;Name=Msa1390330
tig0021333 mRNA 111068 112251 111068 ID=Msa1390330-mRNA-1;Parent=Msa1390330;Name=Msa1390330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=137|1|1|1|1|1|2|335|136
tig0021333 exon 111068 111495 111068 ID=Msa1390330-mRNA-1:exon:12087;Parent=Msa1390330-mRNA-1
tig0021333 exon 111797 112251 111797 ID=Msa1390330-mRNA-1:exon:12088;Parent=Msa1390330-mRNA-1
tig0021333 five_prime_UTR 111068 111204 111068 ID=Msa1390330-mRNA-1:five_prime_utr;Parent=Msa1390330-mRNA-1
tig0021333 CDS 111205 111495 111205 ID=Msa1390330-mRNA-1:cds;Parent=Msa1390330-mRNA-1
tig0021333 CDS 111797 111916 111797 ID=Msa1390330-mRNA-1:cds;Parent=Msa1390330-mRNA-1
tig0021333 three_prime_UTR 111917 112251 111917 ID=Msa1390330-mRNA-1:three_prime_utr;Parent=Msa1390330-mRNA-1
Gene Sequence

>Msa1390330

ATGGAGACAACACTTTCCCTTTCTTCTTCTTTAATTCGCCCTAGGCTTCCAATCTCTTCATCCTATTCCACCTTATCCTTCTTAGCTTCCAATTCTAACAATACATCACTTCTCTTGAAGAAAGCCAGAACCAGAAACAGAAGCACAAAGCGTTTTACTTGCAACGCCTTCTTCGGATTAGGCGTGCCCGAGCTTGTTGTTATTGCAGGAGTCGCTGCTCTTGTTTTCGGTCCTAAGAAATTGCCCGAAGTTGGTCGCAGCATCGGCAAAACTGTCAAAAGCTTCCAACAGGCAGCAAAGGAGTTTGAGACCGAGTTAAAAAAGGAACCTAATTCTACTGAAGAAATTTCTGTTGCGAATGACCAAGAAGATCAAGACAATAATGTTTCTAGTACAAAGGATAGTGTATGA

Protein sequence

>Msa1390330

METTLSLSSSLIRPRLPISSSYSTLSFLASNSNNTSLLLKKARTRNRSTKRFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSFQQAAKEFETELKKEPNSTEEISVANDQEDQDNNVSSTKDSV*