Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455620 | XP_013442459.1 | 90.676 | 547 | 48 | 3 | 1 | 544 | 1 | 547 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455620 | sp|Q9LI74|CHUP1_ARATH | 27.671 | 571 | 301 | 13 | 1 | 474 | 1 | 556 | 1.28e-39 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455620 | A0A072TG04 | 90.676 | 547 | 48 | 3 | 1 | 544 | 1 | 547 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1455620 | 0.848130 | 7.456773e-60 | -8.615850e-47 |
| Msa0011720 | Msa1455620 | 0.805024 | 1.630012e-49 | -8.615850e-47 |
| Msa0017120 | Msa1455620 | 0.835426 | 1.690091e-56 | -8.615850e-47 |
| Msa0024680 | Msa1455620 | 0.810614 | 1.056150e-50 | -8.615850e-47 |
| Msa0027540 | Msa1455620 | 0.820123 | 8.100648e-53 | -8.615850e-47 |
| Msa0030000 | Msa1455620 | 0.825095 | 5.649942e-54 | -8.615850e-47 |
| Msa0030730 | Msa1455620 | 0.800141 | 1.656322e-48 | -8.615850e-47 |
| Msa0044710 | Msa1455620 | 0.800732 | 1.255385e-48 | -8.615850e-47 |
| Msa0050430 | Msa1455620 | 0.808595 | 2.866835e-50 | -8.615850e-47 |
| Msa0060600 | Msa1455620 | 0.808260 | 3.379155e-50 | -8.615850e-47 |
| Msa0065390 | Msa1455620 | 0.824966 | 6.059487e-54 | -8.615850e-47 |
| Msa0068410 | Msa1455620 | 0.809680 | 1.678333e-50 | -8.615850e-47 |
| Msa0075310 | Msa1455620 | 0.827146 | 1.837538e-54 | -8.615850e-47 |
| Msa0079250 | Msa1455620 | 0.801979 | 6.974325e-49 | -8.615850e-47 |
| Msa0089210 | Msa1455620 | 0.807300 | 5.406896e-50 | -8.615850e-47 |
| Msa0091770 | Msa1455620 | 0.803020 | 4.253979e-49 | -8.615850e-47 |
| Msa0094420 | Msa1455620 | 0.809888 | 1.514137e-50 | -8.615850e-47 |
| Msa0103060 | Msa1455620 | 0.804697 | 1.907312e-49 | -8.615850e-47 |
| Msa0105340 | Msa1455620 | 0.813994 | 1.931335e-51 | -8.615850e-47 |
| Msa0105420 | Msa1455620 | 0.814777 | 1.296264e-51 | -8.615850e-47 |
| Msa0110710 | Msa1455620 | 0.824700 | 7.003222e-54 | -8.615850e-47 |
| Msa0113160 | Msa1455620 | 0.818238 | 2.176099e-52 | -8.615850e-47 |
| Msa0114250 | Msa1455620 | 0.815072 | 1.114641e-51 | -8.615850e-47 |
| Msa0120330 | Msa1455620 | 0.814339 | 1.620593e-51 | -8.615850e-47 |
| Msa1349360 | Msa1455620 | 0.802767 | 4.797897e-49 | -8.615850e-47 |
| Msa1352290 | Msa1455620 | 0.804186 | 2.437199e-49 | -8.615850e-47 |
| Msa1367940 | Msa1455620 | 0.816058 | 6.724124e-52 | -8.615850e-47 |
| Msa1374440 | Msa1455620 | 0.821417 | 4.083880e-53 | -8.615850e-47 |
| Msa1379990 | Msa1455620 | 0.839270 | 1.751721e-57 | -8.615850e-47 |
| Msa1381130 | Msa1455620 | 0.833859 | 4.187051e-56 | -8.615850e-47 |
| Msa1382720 | Msa1455620 | 0.804848 | 1.773890e-49 | -8.615850e-47 |
| Msa1397540 | Msa1455620 | 0.814188 | 1.749757e-51 | -8.615850e-47 |
| Msa1405770 | Msa1455620 | 0.811154 | 8.066691e-51 | -8.615850e-47 |
| Msa1422270 | Msa1455620 | 0.816462 | 5.461309e-52 | -8.615850e-47 |
| Msa1431000 | Msa1455620 | 0.808566 | 2.908532e-50 | -8.615850e-47 |
| Msa1431730 | Msa1455620 | 0.805770 | 1.137122e-49 | -8.615850e-47 |
| Msa1435470 | Msa1455620 | 0.818045 | 2.406099e-52 | -8.615850e-47 |
| Msa1447560 | Msa1455620 | 0.807503 | 4.896366e-50 | -8.615850e-47 |
| Msa1454110 | Msa1455620 | 0.811623 | 6.383410e-51 | -8.615850e-47 |
| Msa1455620 | Msa1456650 | 0.805366 | 1.381753e-49 | -8.615850e-47 |
| Msa1455620 | Msa1456810 | 0.821546 | 3.811690e-53 | -8.615850e-47 |
| Msa1455620 | Msa1458920 | 0.823306 | 1.487138e-53 | -8.615850e-47 |
| Msa1455620 | Msa1463810 | 0.813833 | 2.095349e-51 | -8.615850e-47 |
| Msa1455620 | Msa1464560 | 0.817374 | 3.408644e-52 | -8.615850e-47 |
| Msa0605620 | Msa1455620 | 0.814008 | 1.916711e-51 | -8.615850e-47 |
| Msa0606060 | Msa1455620 | 0.826798 | 2.225953e-54 | -8.615850e-47 |
| Msa0607280 | Msa1455620 | 0.805940 | 1.047485e-49 | -8.615850e-47 |
| Msa0607500 | Msa1455620 | 0.800389 | 1.474593e-48 | -8.615850e-47 |
| Msa0614230 | Msa1455620 | 0.804884 | 1.743194e-49 | -8.615850e-47 |
| Msa0619330 | Msa1455620 | 0.832227 | 1.065943e-55 | -8.615850e-47 |
| Msa0619980 | Msa1455620 | 0.839790 | 1.283716e-57 | -8.615850e-47 |
| Msa0620750 | Msa1455620 | 0.804299 | 2.308723e-49 | -8.615850e-47 |
| Msa0622390 | Msa1455620 | 0.825854 | 3.734665e-54 | -8.615850e-47 |
| Msa0624730 | Msa1455620 | 0.808442 | 3.090791e-50 | -8.615850e-47 |
| Msa0626230 | Msa1455620 | 0.800069 | 1.713633e-48 | -8.615850e-47 |
| Msa0642650 | Msa1455620 | 0.803296 | 3.730480e-49 | -8.615850e-47 |
| Msa0647000 | Msa1455620 | 0.824933 | 6.169336e-54 | -8.615850e-47 |
| Msa0650650 | Msa1455620 | 0.806446 | 8.194275e-50 | -8.615850e-47 |
| Msa0650740 | Msa1455620 | 0.804959 | 1.681777e-49 | -8.615850e-47 |
| Msa0652980 | Msa1455620 | 0.806202 | 9.222904e-50 | -8.615850e-47 |
| Msa0653710 | Msa1455620 | 0.820452 | 6.806897e-53 | -8.615850e-47 |
| Msa0654060 | Msa1455620 | 0.814125 | 1.806428e-51 | -8.615850e-47 |
| Msa0663090 | Msa1455620 | 0.874114 | 8.698885e-68 | -8.615850e-47 |
| Msa0674220 | Msa1455620 | 0.809480 | 1.852835e-50 | -8.615850e-47 |
| Msa0681890 | Msa1455620 | 0.817498 | 3.197040e-52 | -8.615850e-47 |
| Msa0686610 | Msa1455620 | 0.825489 | 4.559740e-54 | -8.615850e-47 |
| Msa0695370 | Msa1455620 | 0.807925 | 3.983679e-50 | -8.615850e-47 |
| Msa0706370 | Msa1455620 | 0.813678 | 2.266294e-51 | -8.615850e-47 |
| Msa0707780 | Msa1455620 | 0.815755 | 7.857293e-52 | -8.615850e-47 |
| Msa0709480 | Msa1455620 | 0.806531 | 7.860918e-50 | -8.615850e-47 |
| Msa0719340 | Msa1455620 | 0.807378 | 5.204200e-50 | -8.615850e-47 |
| Msa0724050 | Msa1455620 | 0.821079 | 4.884255e-53 | -8.615850e-47 |
| Msa0725480 | Msa1455620 | -0.801383 | 9.239995e-49 | -8.615850e-47 |
| Msa0726610 | Msa1455620 | 0.821717 | 3.479828e-53 | -8.615850e-47 |
| Msa0733000 | Msa1455620 | 0.819856 | 9.321203e-53 | -8.615850e-47 |
| Msa0739610 | Msa1455620 | 0.800868 | 1.177446e-48 | -8.615850e-47 |
| Msa0743640 | Msa1455620 | 0.818585 | 1.815712e-52 | -8.615850e-47 |
| Msa0754860 | Msa1455620 | 0.813106 | 3.027745e-51 | -8.615850e-47 |
| Msa0763880 | Msa1455620 | 0.818648 | 1.757013e-52 | -8.615850e-47 |
| Msa0763910 | Msa1455620 | 0.807645 | 4.569082e-50 | -8.615850e-47 |
| Msa0772150 | Msa1455620 | 0.817352 | 3.448290e-52 | -8.615850e-47 |
| Msa0789270 | Msa1455620 | 0.815869 | 7.409558e-52 | -8.615850e-47 |
| Msa0789280 | Msa1455620 | 0.813624 | 2.329698e-51 | -8.615850e-47 |
| Msa0789290 | Msa1455620 | 0.810250 | 1.265454e-50 | -8.615850e-47 |
| Msa0789300 | Msa1455620 | 0.810099 | 1.363985e-50 | -8.615850e-47 |
| Msa0810020 | Msa1455620 | 0.829033 | 6.456149e-55 | -8.615850e-47 |
| Msa0811510 | Msa1455620 | 0.822522 | 2.265123e-53 | -8.615850e-47 |
| Msa0820670 | Msa1455620 | 0.811894 | 5.570652e-51 | -8.615850e-47 |
| Msa0824770 | Msa1455620 | 0.825321 | 4.997402e-54 | -8.615850e-47 |
| Msa0833940 | Msa1455620 | 0.820735 | 5.862131e-53 | -8.615850e-47 |
| Msa0837990 | Msa1455620 | 0.802227 | 6.199981e-49 | -8.615850e-47 |
| Msa0125230 | Msa1455620 | 0.803229 | 3.851113e-49 | -8.615850e-47 |
| Msa0135980 | Msa1455620 | 0.805455 | 1.323870e-49 | -8.615850e-47 |
| Msa0141550 | Msa1455620 | 0.800967 | 1.124241e-48 | -8.615850e-47 |
| Msa0141670 | Msa1455620 | 0.822164 | 2.742689e-53 | -8.615850e-47 |
| Msa0142870 | Msa1455620 | 0.816840 | 4.493947e-52 | -8.615850e-47 |
| Msa0146020 | Msa1455620 | 0.834280 | 3.284261e-56 | -8.615850e-47 |
| Msa0149500 | Msa1455620 | 0.811494 | 6.807562e-51 | -8.615850e-47 |
| Msa0151690 | Msa1455620 | 0.811937 | 5.452131e-51 | -8.615850e-47 |
| Msa0157020 | Msa1455620 | 0.819805 | 9.576756e-53 | -8.615850e-47 |
| Msa0162050 | Msa1455620 | 0.802999 | 4.296914e-49 | -8.615850e-47 |
| Msa0164360 | Msa1455620 | 0.805771 | 1.136652e-49 | -8.615850e-47 |
| Msa0168100 | Msa1455620 | 0.814106 | 1.823874e-51 | -8.615850e-47 |
| Msa0182930 | Msa1455620 | 0.800705 | 1.271388e-48 | -8.615850e-47 |
| Msa0185390 | Msa1455620 | 0.837069 | 6.458794e-57 | -8.615850e-47 |
| Msa0194570 | Msa1455620 | 0.811809 | 5.814178e-51 | -8.615850e-47 |
| Msa0207000 | Msa1455620 | 0.831391 | 1.714299e-55 | -8.615850e-47 |
| Msa0208520 | Msa1455620 | 0.912775 | 1.322666e-83 | -8.615850e-47 |
| Msa0222070 | Msa1455620 | 0.805213 | 1.487970e-49 | -8.615850e-47 |
| Msa0222120 | Msa1455620 | 0.807078 | 6.025222e-50 | -8.615850e-47 |
| Msa0227490 | Msa1455620 | 0.817094 | 3.941234e-52 | -8.615850e-47 |
| Msa0227500 | Msa1455620 | 0.813746 | 2.189506e-51 | -8.615850e-47 |
| Msa0230400 | Msa1455620 | 0.801392 | 9.202488e-49 | -8.615850e-47 |
| Msa0235890 | Msa1455620 | 0.813332 | 2.700761e-51 | -8.615850e-47 |
| Msa1254190 | Msa1455620 | 0.803255 | 3.804509e-49 | -8.615850e-47 |
| Msa1265960 | Msa1455620 | 0.804247 | 2.366875e-49 | -8.615850e-47 |
| Msa1284030 | Msa1455620 | 0.813655 | 2.293127e-51 | -8.615850e-47 |
| Msa1303720 | Msa1455620 | 0.809063 | 2.277288e-50 | -8.615850e-47 |
| Msa1303780 | Msa1455620 | 0.810862 | 9.333108e-51 | -8.615850e-47 |
| Msa1323060 | Msa1455620 | 0.836004 | 1.205935e-56 | -8.615850e-47 |
| Msa1327760 | Msa1455620 | 0.802690 | 4.976788e-49 | -8.615850e-47 |
| Msa1327820 | Msa1455620 | 0.815229 | 1.028697e-51 | -8.615850e-47 |
| Msa1341930 | Msa1455620 | 0.812408 | 4.304291e-51 | -8.615850e-47 |
| Msa1343820 | Msa1455620 | 0.801961 | 7.032723e-49 | -8.615850e-47 |
| Msa0371070 | Msa1455620 | 0.804018 | 2.641419e-49 | -8.615850e-47 |
| Msa0378340 | Msa1455620 | 0.806299 | 8.801170e-50 | -8.615850e-47 |
| Msa0426330 | Msa1455620 | 0.810003 | 1.430604e-50 | -8.615850e-47 |
| Msa0427050 | Msa1455620 | 0.800501 | 1.399055e-48 | -8.615850e-47 |
| Msa0427690 | Msa1455620 | 0.807646 | 4.566042e-50 | -8.615850e-47 |
| Msa0436460 | Msa1455620 | 0.835214 | 1.911124e-56 | -8.615850e-47 |
| Msa0988480 | Msa1455620 | 0.836086 | 1.149845e-56 | -8.615850e-47 |
| Msa0990520 | Msa1455620 | 0.819900 | 9.108816e-53 | -8.615850e-47 |
| Msa1002040 | Msa1455620 | 0.830472 | 2.881098e-55 | -8.615850e-47 |
| Msa1015060 | Msa1455620 | 0.810810 | 9.577961e-51 | -8.615850e-47 |
| Msa1018790 | Msa1455620 | 0.819017 | 1.447933e-52 | -8.615850e-47 |
| Msa1038320 | Msa1455620 | 0.813249 | 2.816819e-51 | -8.615850e-47 |
| Msa1043870 | Msa1455620 | 0.810266 | 1.255573e-50 | -8.615850e-47 |
| Msa1044040 | Msa1455620 | 0.814723 | 1.332452e-51 | -8.615850e-47 |
| Msa1044340 | Msa1455620 | 0.807797 | 4.240244e-50 | -8.615850e-47 |
| Msa1055500 | Msa1455620 | 0.800567 | 1.356792e-48 | -8.615850e-47 |
| Msa1073350 | Msa1455620 | 0.803590 | 3.242041e-49 | -8.615850e-47 |
| Msa1089530 | Msa1455620 | 0.839285 | 1.736050e-57 | -8.615850e-47 |
| Msa0252180 | Msa1455620 | 0.838702 | 2.458616e-57 | -8.615850e-47 |
| Msa0253980 | Msa1455620 | 0.811829 | 5.756381e-51 | -8.615850e-47 |
| Msa0257310 | Msa1455620 | 0.825207 | 5.315439e-54 | -8.615850e-47 |
| Msa0263620 | Msa1455620 | 0.806100 | 9.692706e-50 | -8.615850e-47 |
| Msa0274780 | Msa1455620 | 0.802101 | 6.582940e-49 | -8.615850e-47 |
| Msa0278620 | Msa1455620 | 0.822015 | 2.969844e-53 | -8.615850e-47 |
| Msa0281570 | Msa1455620 | 0.800234 | 1.586067e-48 | -8.615850e-47 |
| Msa0284780 | Msa1455620 | 0.819394 | 1.188360e-52 | -8.615850e-47 |
| Msa0288240 | Msa1455620 | 0.810622 | 1.051689e-50 | -8.615850e-47 |
| Msa0296760 | Msa1455620 | 0.815839 | 7.527139e-52 | -8.615850e-47 |
| Msa0298970 | Msa1455620 | 0.809806 | 1.577409e-50 | -8.615850e-47 |
| Msa0301180 | Msa1455620 | 0.808167 | 3.538445e-50 | -8.615850e-47 |
| Msa0318000 | Msa1455620 | 0.838070 | 3.577588e-57 | -8.615850e-47 |
| Msa0320540 | Msa1455620 | 0.815326 | 9.790423e-52 | -8.615850e-47 |
| Msa0331140 | Msa1455620 | 0.818463 | 1.934301e-52 | -8.615850e-47 |
| Msa0336270 | Msa1455620 | 0.814904 | 1.214976e-51 | -8.615850e-47 |
| Msa0344070 | Msa1455620 | 0.812077 | 5.083616e-51 | -8.615850e-47 |
| Msa0357380 | Msa1455620 | 0.803481 | 3.414413e-49 | -8.615850e-47 |
| Msa0357390 | Msa1455620 | 0.813421 | 2.581180e-51 | -8.615850e-47 |
| Msa1125780 | Msa1455620 | 0.804358 | 2.244626e-49 | -8.615850e-47 |
| Msa1125950 | Msa1455620 | 0.810522 | 1.105725e-50 | -8.615850e-47 |
| Msa1150970 | Msa1455620 | 0.805456 | 1.323608e-49 | -8.615850e-47 |
| Msa1159360 | Msa1455620 | 0.826543 | 2.560200e-54 | -8.615850e-47 |
| Msa1159990 | Msa1455620 | 0.819895 | 9.133437e-53 | -8.615850e-47 |
| Msa1166180 | Msa1455620 | 0.809227 | 2.099603e-50 | -8.615850e-47 |
| Msa1166280 | Msa1455620 | 0.803631 | 3.178586e-49 | -8.615850e-47 |
| Msa1171340 | Msa1455620 | 0.813057 | 3.103342e-51 | -8.615850e-47 |
| Msa1172590 | Msa1455620 | 0.902851 | 6.346785e-79 | -8.615850e-47 |
| Msa1210770 | Msa1455620 | 0.813228 | 2.845806e-51 | -8.615850e-47 |
| Msa1217660 | Msa1455620 | 0.800108 | 1.682403e-48 | -8.615850e-47 |
| Msa1220450 | Msa1455620 | -0.804010 | 2.652502e-49 | -8.615850e-47 |
| Msa1220460 | Msa1455620 | -0.802247 | 6.141026e-49 | -8.615850e-47 |
| Msa1220740 | Msa1455620 | 0.804961 | 1.680340e-49 | -8.615850e-47 |
| Msa0484690 | Msa1455620 | 0.819200 | 1.315924e-52 | -8.615850e-47 |
| Msa0490300 | Msa1455620 | 0.811035 | 8.563144e-51 | -8.615850e-47 |
| Msa0490350 | Msa1455620 | 0.801703 | 7.946788e-49 | -8.615850e-47 |
| Msa0508200 | Msa1455620 | 0.802945 | 4.408961e-49 | -8.615850e-47 |
| Msa0508610 | Msa1455620 | 0.816484 | 5.400949e-52 | -8.615850e-47 |
| Msa0508650 | Msa1455620 | 0.807940 | 3.953645e-50 | -8.615850e-47 |
| Msa0511890 | Msa1455620 | 0.801932 | 7.128806e-49 | -8.615850e-47 |
| Msa0518520 | Msa1455620 | 0.804410 | 2.189616e-49 | -8.615850e-47 |
| Msa0524090 | Msa1455620 | 0.816131 | 6.476336e-52 | -8.615850e-47 |
| Msa0524120 | Msa1455620 | 0.835845 | 1.323458e-56 | -8.615850e-47 |
| Msa0535030 | Msa1455620 | 0.802070 | 6.680241e-49 | -8.615850e-47 |
| Msa0535450 | Msa1455620 | 0.823944 | 1.054288e-53 | -8.615850e-47 |
| Msa0546380 | Msa1455620 | 0.814891 | 1.222836e-51 | -8.615850e-47 |
| Msa0546740 | Msa1455620 | 0.813931 | 1.993868e-51 | -8.615850e-47 |
| Msa0557630 | Msa1455620 | 0.820423 | 6.914469e-53 | -8.615850e-47 |
| Msa0558890 | Msa1455620 | 0.803141 | 4.017170e-49 | -8.615850e-47 |
| Msa0576420 | Msa1455620 | 0.828689 | 7.816853e-55 | -8.615850e-47 |
| Msa0579340 | Msa1455620 | 0.803264 | 3.787750e-49 | -8.615850e-47 |
| Msa0582110 | Msa1455620 | 0.814218 | 1.723290e-51 | -8.615850e-47 |
| Msa0850500 | Msa1455620 | 0.836535 | 8.838299e-57 | -8.615850e-47 |
| Msa0851740 | Msa1455620 | 0.813754 | 2.181203e-51 | -8.615850e-47 |
| Msa0863760 | Msa1455620 | 0.815933 | 7.169671e-52 | -8.615850e-47 |
| Msa0872660 | Msa1455620 | 0.808836 | 2.546765e-50 | -8.615850e-47 |
| Msa0886980 | Msa1455620 | 0.824727 | 6.901964e-54 | -8.615850e-47 |
| Msa0890250 | Msa1455620 | 0.807258 | 5.520062e-50 | -8.615850e-47 |
| Msa0903730 | Msa1455620 | 0.804994 | 1.653797e-49 | -8.615850e-47 |
| Msa0907700 | Msa1455620 | 0.823526 | 1.321060e-53 | -8.615850e-47 |
| Msa0922540 | Msa1455620 | 0.811172 | 7.995762e-51 | -8.615850e-47 |
| Msa0925160 | Msa1455620 | 0.817663 | 2.933552e-52 | -8.615850e-47 |
| Msa0946320 | Msa1455620 | 0.802576 | 5.253538e-49 | -8.615850e-47 |
| Msa0951710 | Msa1455620 | 0.829937 | 3.893079e-55 | -8.615850e-47 |
| Msa0958020 | Msa1455620 | 0.819247 | 1.283994e-52 | -8.615850e-47 |
| Msa0971860 | Msa1455620 | 0.806150 | 9.457631e-50 | -8.615850e-47 |
| Msa0978000 | Msa1455620 | 0.802326 | 5.915936e-49 | -8.615850e-47 |
| Msa0979550 | Msa1455620 | 0.804280 | 2.330276e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455620 | MtrunA17_Chr2g0307341 | 90.909 | 517 | 44 | 3 | 31 | 544 | 4 | 520 | 0.0 | 884 |
| Msa1455620 | MtrunA17_Chr5g0422391 | 29.978 | 457 | 252 | 8 | 1 | 393 | 1 | 453 | 2.86e-39 | 154 |
| Msa1455620 | MtrunA17_Chr1g0198861 | 30.508 | 354 | 190 | 7 | 83 | 393 | 127 | 467 | 1.01e-29 | 124 |
| Msa1455620 | MtrunA17_Chr2g0330791 | 23.266 | 447 | 267 | 19 | 66 | 463 | 113 | 532 | 2.84e-15 | 79.0 |
| Msa1455620 | MtrunA17_Chr1g0151531 | 40.426 | 94 | 51 | 1 | 221 | 309 | 207 | 300 | 4.09e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455620 | AT3G25690.1 | 27.671 | 571 | 301 | 13 | 1 | 474 | 1 | 556 | 1.30e-40 | 158 |
| Msa1455620 | AT3G25690.2 | 27.671 | 571 | 301 | 13 | 1 | 474 | 1 | 556 | 1.30e-40 | 158 |
| Msa1455620 | AT3G25690.6 | 27.671 | 571 | 301 | 13 | 1 | 474 | 1 | 556 | 1.30e-40 | 158 |
| Msa1455620 | AT3G25690.4 | 27.671 | 571 | 301 | 13 | 1 | 474 | 1 | 556 | 1.30e-40 | 158 |
| Msa1455620 | AT3G25690.5 | 29.956 | 454 | 266 | 8 | 61 | 474 | 117 | 558 | 1.62e-39 | 155 |
| Msa1455620 | AT3G25690.3 | 29.155 | 367 | 216 | 7 | 148 | 474 | 53 | 415 | 6.91e-29 | 122 |
| Msa1455620 | AT1G52080.2 | 26.389 | 288 | 198 | 5 | 77 | 351 | 133 | 419 | 3.00e-14 | 76.3 |
| Msa1455620 | AT1G52080.1 | 26.389 | 288 | 198 | 5 | 77 | 351 | 133 | 419 | 3.00e-14 | 76.3 |
Find 72 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAAGGTTGTGAAAATA+TGG | 0.214823 | tig0036392:+21174 | Msa1455620:CDS |
| CAGTTATTTCCTCTTGTATC+TGG | 0.218990 | tig0036392:-22421 | Msa1455620:intergenic |
| AGATAGAGCATTACAAGTTT+TGG | 0.250398 | tig0036392:+21609 | Msa1455620:CDS |
| GGTTTCTCTAGATTCATAAA+TGG | 0.289507 | tig0036392:-22950 | Msa1455620:intergenic |
| TGATCCTAAAATATGCTAAA+AGG | 0.289533 | tig0036392:-23306 | Msa1455620:intergenic |
| AGCATATGAAAAGCCATCTT+TGG | 0.325337 | tig0036392:-22529 | Msa1455620:intergenic |
| GAACTAATTCACTTGTTTGC+TGG | 0.328676 | tig0036392:+20551 | Msa1455620:five_prime_UTR |
| ATTCAATAAGTTTCCTTTCA+AGG | 0.329852 | tig0036392:-21261 | Msa1455620:intergenic |
| AAATTGGTTATTCAGATGAT+AGG | 0.356532 | tig0036392:+23233 | Msa1455620:CDS |
| GAGAAACAAAGAGCTTGAAT+TGG | 0.372240 | tig0036392:+21642 | Msa1455620:CDS |
| TTCCCAACTGAAAATGCAAT+TGG | 0.384279 | tig0036392:+21315 | Msa1455620:CDS |
| ATTGAATTGCCACAAATTGA+AGG | 0.402982 | tig0036392:+21160 | Msa1455620:CDS |
| TATTACATGCTTGGAGTTGA+AGG | 0.429047 | tig0036392:+23096 | Msa1455620:CDS |
| AGCAATAGCAAGGATCAAAT+TGG | 0.431409 | tig0036392:+23217 | Msa1455620:CDS |
| GAGAGTGTCTTTCAGTGAAT+CGG | 0.434216 | tig0036392:+22988 | Msa1455620:CDS |
| GACACTCTCTTCAATCTTGT+CGG | 0.446002 | tig0036392:-22974 | Msa1455620:intergenic |
| CAACGAGAAGAATTCGCAAA+AGG | 0.456642 | tig0036392:+22826 | Msa1455620:CDS |
| TGAAGCTCATCACTTAGTAT+TGG | 0.457504 | tig0036392:-20460 | Msa1455620:intergenic |
| TGCTTAATAAATTGAGAAGA+TGG | 0.459048 | tig0036392:+22786 | Msa1455620:CDS |
| GAATTCAACTATTACATGCT+TGG | 0.460309 | tig0036392:+23087 | Msa1455620:CDS |
| CTTGGAGTTGAAGGAACATA+AGG | 0.469510 | tig0036392:+23105 | Msa1455620:CDS |
| CAATCCTTTGCCTAAAATCA+TGG | 0.471604 | tig0036392:-22615 | Msa1455620:intergenic |
| AAGAAACAATTGCTTCCCTT+CGG | 0.476707 | tig0036392:+21368 | Msa1455620:CDS |
| TATGGATTATATCACTGAAA+AGG | 0.480155 | tig0036392:+21192 | Msa1455620:CDS |
| CGTATCAGTCCAGGTCTGCT+TGG | 0.483600 | tig0036392:-22860 | Msa1455620:intergenic |
| AAATATAATATAAACAAAGA+AGG | 0.486063 | tig0036392:-23340 | Msa1455620:intergenic |
| TTATGCTAGTGATGTAATAC+AGG | 0.499721 | tig0036392:+21022 | Msa1455620:CDS |
| GACTACTAGAAGAACTTTCG+AGG | 0.501559 | tig0036392:-22736 | Msa1455620:intergenic |
| ATGCTAAAAGGACTAACAAA+AGG | 0.505098 | tig0036392:-23294 | Msa1455620:intergenic |
| GCTCATCACTTAGTATTGGT+TGG | 0.522372 | tig0036392:-20456 | Msa1455620:intergenic |
| AGAGCTTGAATTGGAAAAGA+GGG | 0.523110 | tig0036392:+21651 | Msa1455620:CDS |
| GACGAATTAGCGAAGTATAA+CGG | 0.524430 | tig0036392:+21547 | Msa1455620:CDS |
| GGAAATAGACCAAGCAGACC+TGG | 0.525005 | tig0036392:+22851 | Msa1455620:CDS |
| GAAAGTAAGAAGGATATGAA+TGG | 0.525878 | tig0036392:+21481 | Msa1455620:CDS |
| GTATAACGGTGCTACTGCTA+TGG | 0.531287 | tig0036392:+21561 | Msa1455620:CDS |
| AAGAGCTTGAATTGGAAAAG+AGG | 0.534837 | tig0036392:+21650 | Msa1455620:CDS |
| AAGAGCTTGTGTACCAAAGA+TGG | 0.535326 | tig0036392:+22516 | Msa1455620:CDS |
| AATATAATATAAACAAAGAA+GGG | 0.536336 | tig0036392:-23339 | Msa1455620:intergenic |
| AAATGAGATGGAAAGTAAGA+AGG | 0.537582 | tig0036392:+21471 | Msa1455620:CDS |
| TGTCTCTTCGAATGCTACAT+TGG | 0.540927 | tig0036392:+22685 | Msa1455620:CDS |
| AAGCCAAGGAAAAGTTGTGC+TGG | 0.541224 | tig0036392:+22920 | Msa1455620:CDS |
| AACGAGAAGAATTCGCAAAA+GGG | 0.542769 | tig0036392:+22827 | Msa1455620:CDS |
| ATACTAGCAGTTGCACCAGC+AGG | 0.548818 | tig0036392:-23264 | Msa1455620:intergenic |
| GAATTGGAAAAGAGGGAAGT+AGG | 0.556434 | tig0036392:+21658 | Msa1455620:CDS |
| AATACAAAATTACAAGCAGA+GGG | 0.556657 | tig0036392:+21231 | Msa1455620:CDS |
| AAATAAAATTATAAATGAGA+TGG | 0.564223 | tig0036392:+21459 | Msa1455620:CDS |
| AACCGTTTGGTAAAATCTCA+AGG | 0.567264 | tig0036392:+20648 | Msa1455620:CDS |
| CATGGTGCAGTCTTGTCTTG+TGG | 0.573141 | tig0036392:-22597 | Msa1455620:intergenic |
| TAATACAAAATTACAAGCAG+AGG | 0.573232 | tig0036392:+21230 | Msa1455620:CDS |
| GAGTCCTCTGCAGAGAATGA+AGG | 0.577800 | tig0036392:+23193 | Msa1455620:CDS |
| TTACTATGAACGAGGTAATG+AGG | 0.579284 | tig0036392:+20517 | Msa1455620:five_prime_UTR |
| GAGCAAATCATATGAAAATG+TGG | 0.585519 | tig0036392:+23150 | Msa1455620:CDS |
| TGATAGGATTAAAAGCCTGC+TGG | 0.586016 | tig0036392:+23249 | Msa1455620:CDS |
| TATTGAATTGAATAGACTGA+AGG | 0.588485 | tig0036392:+21276 | Msa1455620:CDS |
| ACTACTAGAAGAACTTTCGA+GGG | 0.589577 | tig0036392:-22735 | Msa1455620:intergenic |
| AGAGGGAAATAAGCCTTGAA+AGG | 0.591640 | tig0036392:+21248 | Msa1455620:CDS |
| AATCGAATCTATCAAAGCCA+AGG | 0.595033 | tig0036392:+22906 | Msa1455620:CDS |
| ACTCTCTTCAATCTTGTCGG+TGG | 0.595803 | tig0036392:-22971 | Msa1455620:intergenic |
| GAATGAAGGTAGCAATAGCA+AGG | 0.596561 | tig0036392:+23207 | Msa1455620:CDS |
| GAGAAGAATTCGCAAAAGGG+TGG | 0.615360 | tig0036392:+22830 | Msa1455620:CDS |
| AAAAGTGATCCAGATACAAG+AGG | 0.617671 | tig0036392:+22412 | Msa1455620:CDS |
| GAAAACCTACGTATCAGTCC+AGG | 0.621559 | tig0036392:-22869 | Msa1455620:intergenic |
| TATGAATGGAAGCCATGTCA+AGG | 0.622161 | tig0036392:+21495 | Msa1455620:CDS |
| GCAGACCTGGACTGATACGT+AGG | 0.622599 | tig0036392:+22864 | Msa1455620:CDS |
| GCTACCTTCATTCTCTGCAG+AGG | 0.626177 | tig0036392:-23197 | Msa1455620:intergenic |
| TGTTATGCAAGAAGAAGTTG+AGG | 0.632417 | tig0036392:+23030 | Msa1455620:CDS |
| TCAACATCTGATCCTTGACA+TGG | 0.644517 | tig0036392:-21507 | Msa1455620:intergenic |
| TTGTTCTATTACTATGAACG+AGG | 0.654006 | tig0036392:+20509 | Msa1455620:five_prime_UTR |
| ACTAGAAGAACTTTCGAGGG+TGG | 0.654936 | tig0036392:-22732 | Msa1455620:intergenic |
| ACTAGCAAGAAACAAATCAG+AGG | 0.695668 | tig0036392:+21699 | Msa1455620:CDS |
| CCAAGGAAAAGTTGTGCTGG+TGG | 0.704338 | tig0036392:+22923 | Msa1455620:CDS |
| GCAGAAGAACAGATTCGACA+TGG | 0.704856 | tig0036392:+22490 | Msa1455620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTATTTTTAATT+TGG | + | tig0036392:20756-20775 | Msa1455620:intron | 0.0% |
| !! | AAATAAAATTATAAATGAGA+TGG | + | tig0036392:21459-21478 | Msa1455620:CDS | 10.0% |
| !!! | ATAATTTTAATAATACAAGA+TGG | - | tig0036392:21813-21832 | Msa1455620:intergenic | 10.0% |
| !!! | CTAAATTTTGTTAAAATAAT+AGG | + | tig0036392:22272-22291 | Msa1455620:intron | 10.0% |
| !! | AATATAATATAAACAAAGAA+GGG | - | tig0036392:23342-23361 | Msa1455620:intergenic | 10.0% |
| !! | AAATATAATATAAACAAAGA+AGG | - | tig0036392:23343-23362 | Msa1455620:intergenic | 10.0% |
| !! | ATAAATGAATGAAGTAAATA+GGG | - | tig0036392:20725-20744 | Msa1455620:intergenic | 15.0% |
| !! | AACAAAAAATAACACATAAA+AGG | - | tig0036392:21050-21069 | Msa1455620:intergenic | 15.0% |
| !!! | TAAAGACAAATCAATTTTTT+GGG | - | tig0036392:21105-21124 | Msa1455620:intergenic | 15.0% |
| !!! | TTAAAGACAAATCAATTTTT+TGG | - | tig0036392:21106-21125 | Msa1455620:intergenic | 15.0% |
| !! | TATTAAAGAAAAAATAGAAG+AGG | + | tig0036392:21405-21424 | Msa1455620:CDS | 15.0% |
| !! | TATTCTTATGTTCATTAATA+TGG | + | tig0036392:21765-21784 | Msa1455620:intron | 15.0% |
| !! | ATTCTTATGTTCATTAATAT+GGG | + | tig0036392:21766-21785 | Msa1455620:intron | 15.0% |
| !!! | AAGTAATGTTGATTAATTAT+AGG | - | tig0036392:22233-22252 | Msa1455620:intergenic | 15.0% |
| !! | TACCTTAAATTTATTGTTTA+AGG | + | tig0036392:22331-22350 | Msa1455620:intron | 15.0% |
| !! | TAATAAAAAGCAAATTAGAA+AGG | + | tig0036392:22574-22593 | Msa1455620:CDS | 15.0% |
| !! | CATAAATGAATGAAGTAAAT+AGG | - | tig0036392:20726-20745 | Msa1455620:intergenic | 20.0% |
| !!! | GTTTAGTTTCTTTATTAAGT+TGG | + | tig0036392:20901-20920 | Msa1455620:intron | 20.0% |
| !! | ATCCTACAAAAAAAAATCAT+TGG | + | tig0036392:22182-22201 | Msa1455620:intron | 20.0% |
| !! | TCCTACAAAAAAAAATCATT+GGG | + | tig0036392:22183-22202 | Msa1455620:intron | 20.0% |
| !! | AATCAACATTACTTAAGTTA+TGG | + | tig0036392:22239-22258 | Msa1455620:intron | 20.0% |
| !! | TTGTTAAAATAATAGGTAGT+AGG | + | tig0036392:22279-22298 | Msa1455620:intron | 20.0% |
| !!! | AAACAATAAATTTAAGGTAG+AGG | - | tig0036392:22330-22349 | Msa1455620:intergenic | 20.0% |
| !! | AGCCTTAAACAATAAATTTA+AGG | - | tig0036392:22336-22355 | Msa1455620:intergenic | 20.0% |
| !!! | AGAATTAGTTTCATTTTCAT+CGG | - | tig0036392:23062-23081 | Msa1455620:intergenic | 20.0% |
| ! | AATTAACAGAGGAAAAATGA+TGG | - | tig0036392:20676-20695 | Msa1455620:intergenic | 25.0% |
| ! | AATTGAAGGTTGTGAAAATA+TGG | + | tig0036392:21174-21193 | Msa1455620:CDS | 25.0% |
| !! | TATGGATTATATCACTGAAA+AGG | + | tig0036392:21192-21211 | Msa1455620:CDS | 25.0% |
| ! | TAATACAAAATTACAAGCAG+AGG | + | tig0036392:21230-21249 | Msa1455620:CDS | 25.0% |
| ! | AATACAAAATTACAAGCAGA+GGG | + | tig0036392:21231-21250 | Msa1455620:CDS | 25.0% |
| ! | ATTCAATAAGTTTCCTTTCA+AGG | - | tig0036392:21264-21283 | Msa1455620:intergenic | 25.0% |
| ! | TATTGAATTGAATAGACTGA+AGG | + | tig0036392:21276-21295 | Msa1455620:CDS | 25.0% |
| ! | ACATTCAACACTAATCTATT+GGG | + | tig0036392:21890-21909 | Msa1455620:intron | 25.0% |
| ! | ATATAAGAGTTTATCCATTC+GGG | - | tig0036392:21944-21963 | Msa1455620:intergenic | 25.0% |
| ! | GATATAAGAGTTTATCCATT+CGG | - | tig0036392:21945-21964 | Msa1455620:intergenic | 25.0% |
| ! | AGAAAAGAGTTTATAAAGAG+TGG | - | tig0036392:22044-22063 | Msa1455620:intergenic | 25.0% |
| !!! | ACCCAATGATTTTTTTTTGT+AGG | - | tig0036392:22187-22206 | Msa1455620:intergenic | 25.0% |
| ! | TGCTTAATAAATTGAGAAGA+TGG | + | tig0036392:22786-22805 | Msa1455620:CDS | 25.0% |
| ! | AAATTGGTTATTCAGATGAT+AGG | + | tig0036392:23233-23252 | Msa1455620:CDS | 25.0% |
| !! | TAGTCCTTTTAGCATATTTT+AGG | + | tig0036392:23302-23321 | Msa1455620:CDS | 25.0% |
| ! | TGATCCTAAAATATGCTAAA+AGG | - | tig0036392:23309-23328 | Msa1455620:intergenic | 25.0% |
| TTGTTCTATTACTATGAACG+AGG | + | tig0036392:20509-20528 | Msa1455620:five_prime_UTR | 30.0% | |
| ! | TACCTTGAGATTTTACCAAA+CGG | - | tig0036392:20653-20672 | Msa1455620:intergenic | 30.0% |
| GAGAAACTATGAATTAACAG+AGG | - | tig0036392:20687-20706 | Msa1455620:intergenic | 30.0% | |
| ! | AAGTGAATAAATGAAGTGTC+TGG | + | tig0036392:20815-20834 | Msa1455620:intron | 30.0% |
| !! | TGAACATGATTTTGAGGAAA+TGG | + | tig0036392:20986-21005 | Msa1455620:CDS | 30.0% |
| !! | GATTTTGAGGAAATGGAAAA+TGG | + | tig0036392:20993-21012 | Msa1455620:CDS | 30.0% |
| TTATGCTAGTGATGTAATAC+AGG | + | tig0036392:21022-21041 | Msa1455620:CDS | 30.0% | |
| ATTGAATTGCCACAAATTGA+AGG | + | tig0036392:21160-21179 | Msa1455620:CDS | 30.0% | |
| ! | TTTTCACAACCTTCAATTTG+TGG | - | tig0036392:21172-21191 | Msa1455620:intergenic | 30.0% |
| AAATGAGATGGAAAGTAAGA+AGG | + | tig0036392:21471-21490 | Msa1455620:CDS | 30.0% | |
| GAAAGTAAGAAGGATATGAA+TGG | + | tig0036392:21481-21500 | Msa1455620:CDS | 30.0% | |
| !! | AGATAGAGCATTACAAGTTT+TGG | + | tig0036392:21609-21628 | Msa1455620:CDS | 30.0% |
| !!! | TACAAGTTTTGGAAATGAAG+AGG | + | tig0036392:21620-21639 | Msa1455620:CDS | 30.0% |
| ATGTTCATTAATATGGGACT+TGG | + | tig0036392:21772-21791 | Msa1455620:intron | 30.0% | |
| !! | AACCTAGTCTGCTTTTAATA+TGG | + | tig0036392:21838-21857 | Msa1455620:intron | 30.0% |
| TACCATATTAAAAGCAGACT+AGG | - | tig0036392:21843-21862 | Msa1455620:intergenic | 30.0% | |
| !! | TCTGCTTTTAATATGGTACT+TGG | + | tig0036392:21845-21864 | Msa1455620:intron | 30.0% |
| ! | GATTAGTGTTGAATGTGAAA+GGG | - | tig0036392:21886-21905 | Msa1455620:intergenic | 30.0% |
| ! | AGATTAGTGTTGAATGTGAA+AGG | - | tig0036392:21887-21906 | Msa1455620:intergenic | 30.0% |
| CACATTCAACACTAATCTAT+TGG | + | tig0036392:21889-21908 | Msa1455620:intron | 30.0% | |
| TGCTCACAAAACAATCATAT+TGG | - | tig0036392:22104-22123 | Msa1455620:intergenic | 30.0% | |
| AATACAACCAGAAACTATGT+TGG | + | tig0036392:22149-22168 | Msa1455620:intron | 30.0% | |
| !!! | TGCTCGATAATTTTTTCTAC+AGG | + | tig0036392:22385-22404 | Msa1455620:intron | 30.0% |
| GGTTTCTCTAGATTCATAAA+TGG | - | tig0036392:22953-22972 | Msa1455620:intergenic | 30.0% | |
| GAATTCAACTATTACATGCT+TGG | + | tig0036392:23087-23106 | Msa1455620:CDS | 30.0% | |
| GAGCAAATCATATGAAAATG+TGG | + | tig0036392:23150-23169 | Msa1455620:CDS | 30.0% | |
| ATGCTAAAAGGACTAACAAA+AGG | - | tig0036392:23297-23316 | Msa1455620:intergenic | 30.0% | |
| TGAAGCTCATCACTTAGTAT+TGG | - | tig0036392:20463-20482 | Msa0997570:intergenic | 35.0% | |
| TTACTATGAACGAGGTAATG+AGG | + | tig0036392:20517-20536 | Msa1455620:five_prime_UTR | 35.0% | |
| GAACTAATTCACTTGTTTGC+TGG | + | tig0036392:20551-20570 | Msa1455620:five_prime_UTR | 35.0% | |
| AGCTTCAAAAAGAAACCGTT+TGG | + | tig0036392:20635-20654 | Msa1455620:CDS | 35.0% | |
| AACCGTTTGGTAAAATCTCA+AGG | + | tig0036392:20648-20667 | Msa1455620:CDS | 35.0% | |
| CATAATATATGCAGGGGTAA+GGG | - | tig0036392:20849-20868 | Msa1455620:intergenic | 35.0% | |
| GCATTGCATAATATATGCAG+GGG | - | tig0036392:20855-20874 | Msa1455620:intergenic | 35.0% | |
| GGCATTGCATAATATATGCA+GGG | - | tig0036392:20856-20875 | Msa1455620:intergenic | 35.0% | |
| ! | AGACTCTGAACATGATTTTG+AGG | + | tig0036392:20980-20999 | Msa1455620:CDS | 35.0% |
| TTCCCAACTGAAAATGCAAT+TGG | + | tig0036392:21315-21334 | Msa1455620:CDS | 35.0% | |
| ! | CTCCAATTGCATTTTCAGTT+GGG | - | tig0036392:21320-21339 | Msa1455620:intergenic | 35.0% |
| ! | TCTCCAATTGCATTTTCAGT+TGG | - | tig0036392:21321-21340 | Msa1455620:intergenic | 35.0% |
| AAGAAACAATTGCTTCCCTT+CGG | + | tig0036392:21368-21387 | Msa1455620:CDS | 35.0% | |
| !!! | AATTTTGGTTTCGAACCGAA+GGG | - | tig0036392:21386-21405 | Msa1455620:intergenic | 35.0% |
| !!! | TAATTTTGGTTTCGAACCGA+AGG | - | tig0036392:21387-21406 | Msa1455620:intergenic | 35.0% |
| GACGAATTAGCGAAGTATAA+CGG | + | tig0036392:21547-21566 | Msa1455620:CDS | 35.0% | |
| GAGAAACAAAGAGCTTGAAT+TGG | + | tig0036392:21642-21661 | Msa1455620:CDS | 35.0% | |
| AAGAGCTTGAATTGGAAAAG+AGG | + | tig0036392:21650-21669 | Msa1455620:CDS | 35.0% | |
| AGAGCTTGAATTGGAAAAGA+GGG | + | tig0036392:21651-21670 | Msa1455620:CDS | 35.0% | |
| ACTAGCAAGAAACAAATCAG+AGG | + | tig0036392:21699-21718 | Msa1455620:CDS | 35.0% | |
| ! | TGTTTTGTGAGCAAAGTGAA+AGG | + | tig0036392:22111-22130 | Msa1455620:intron | 35.0% |
| AAAAGTGATCCAGATACAAG+AGG | + | tig0036392:22412-22431 | Msa1455620:CDS | 35.0% | |
| ! | CAGTTATTTCCTCTTGTATC+TGG | - | tig0036392:22424-22443 | Msa1455620:intergenic | 35.0% |
| AGCATATGAAAAGCCATCTT+TGG | - | tig0036392:22532-22551 | Msa1455620:intergenic | 35.0% | |
| ! | GATGGCTTTTCATATGCTTA+AGG | + | tig0036392:22534-22553 | Msa1455620:CDS | 35.0% |
| CAATCCTTTGCCTAAAATCA+TGG | - | tig0036392:22618-22637 | Msa1455620:intergenic | 35.0% | |
| ACTACTAGAAGAACTTTCGA+GGG | - | tig0036392:22738-22757 | Msa1455620:intergenic | 35.0% | |
| AACGAGAAGAATTCGCAAAA+GGG | + | tig0036392:22827-22846 | Msa1455620:CDS | 35.0% | |
| AATCGAATCTATCAAAGCCA+AGG | + | tig0036392:22906-22925 | Msa1455620:CDS | 35.0% | |
| TGTTATGCAAGAAGAAGTTG+AGG | + | tig0036392:23030-23049 | Msa1455620:CDS | 35.0% | |
| TATTACATGCTTGGAGTTGA+AGG | + | tig0036392:23096-23115 | Msa1455620:CDS | 35.0% | |
| AGCAATAGCAAGGATCAAAT+TGG | + | tig0036392:23217-23236 | Msa1455620:CDS | 35.0% | |
| !! | GCTCATCACTTAGTATTGGT+TGG | - | tig0036392:20459-20478 | Msa0997570:intergenic | 40.0% |
| GCATAATATATGCAGGGGTA+AGG | - | tig0036392:20850-20869 | Msa1455620:intergenic | 40.0% | |
| ! | GGGCATTGCATAATATATGC+AGG | - | tig0036392:20857-20876 | Msa1455620:intergenic | 40.0% |
| !! | TCACTTCTTTTGCTTGCTGA+AGG | - | tig0036392:20954-20973 | Msa1455620:intergenic | 40.0% |
| AGAGGGAAATAAGCCTTGAA+AGG | + | tig0036392:21248-21267 | Msa1455620:CDS | 40.0% | |
| TATGAATGGAAGCCATGTCA+AGG | + | tig0036392:21495-21514 | Msa1455620:CDS | 40.0% | |
| TCAACATCTGATCCTTGACA+TGG | - | tig0036392:21510-21529 | Msa1455620:intergenic | 40.0% | |
| GAATTGGAAAAGAGGGAAGT+AGG | + | tig0036392:21658-21677 | Msa1455620:CDS | 40.0% | |
| ACTGGCACATCTAATCTAGT+CGG | - | tig0036392:22020-22039 | Msa1455620:intergenic | 40.0% | |
| GAGTTTATAAAGAGTGGCAC+TGG | - | tig0036392:22038-22057 | Msa1455620:intergenic | 40.0% | |
| CCATGAACCAACATAGTTTC+TGG | - | tig0036392:22159-22178 | Msa1455620:intergenic | 40.0% | |
| !! | CCAGAAACTATGTTGGTTCA+TGG | + | tig0036392:22156-22175 | Msa1455620:intron | 40.0% |
| AAGAGCTTGTGTACCAAAGA+TGG | + | tig0036392:22516-22535 | Msa1455620:CDS | 40.0% | |
| ! | CAAGACTGCACCATGATTTT+AGG | + | tig0036392:22605-22624 | Msa1455620:CDS | 40.0% |
| ! | TGCACCATGATTTTAGGCAA+AGG | + | tig0036392:22611-22630 | Msa1455620:CDS | 40.0% |
| TGTCTCTTCGAATGCTACAT+TGG | + | tig0036392:22685-22704 | Msa1455620:CDS | 40.0% | |
| GACTACTAGAAGAACTTTCG+AGG | - | tig0036392:22739-22758 | Msa1455620:intergenic | 40.0% | |
| CAACGAGAAGAATTCGCAAA+AGG | + | tig0036392:22826-22845 | Msa1455620:CDS | 40.0% | |
| GACACTCTCTTCAATCTTGT+CGG | - | tig0036392:22977-22996 | Msa1455620:intergenic | 40.0% | |
| !! | GAGAGTGTCTTTCAGTGAAT+CGG | + | tig0036392:22988-23007 | Msa1455620:CDS | 40.0% |
| CTTGGAGTTGAAGGAACATA+AGG | + | tig0036392:23105-23124 | Msa1455620:CDS | 40.0% | |
| GAATGAAGGTAGCAATAGCA+AGG | + | tig0036392:23207-23226 | Msa1455620:CDS | 40.0% | |
| TGATAGGATTAAAAGCCTGC+TGG | + | tig0036392:23249-23268 | Msa1455620:CDS | 40.0% | |
| CTGTCCTCGTGAACTCAATT+GGG | - | tig0036392:20882-20901 | Msa1455620:intergenic | 45.0% | |
| ACTGTCCTCGTGAACTCAAT+TGG | - | tig0036392:20883-20902 | Msa1455620:intergenic | 45.0% | |
| !! | GTATAACGGTGCTACTGCTA+TGG | + | tig0036392:21561-21580 | Msa1455620:CDS | 45.0% |
| AATCTATTGGGTTTAGCGCG+TGG | + | tig0036392:21902-21921 | Msa1455620:intron | 45.0% | |
| ! | TTAGCGCGTGGTTGATTTCT+TGG | + | tig0036392:21914-21933 | Msa1455620:intron | 45.0% |
| GATTTCTTGGATGACCCGAA+TGG | + | tig0036392:21927-21946 | Msa1455620:intron | 45.0% | |
| GCAGAAGAACAGATTCGACA+TGG | + | tig0036392:22490-22509 | Msa1455620:CDS | 45.0% | |
| ACTAGAAGAACTTTCGAGGG+TGG | - | tig0036392:22735-22754 | Msa1455620:intergenic | 45.0% | |
| GAGAAGAATTCGCAAAAGGG+TGG | + | tig0036392:22830-22849 | Msa1455620:CDS | 45.0% | |
| GAAAACCTACGTATCAGTCC+AGG | - | tig0036392:22872-22891 | Msa1455620:intergenic | 45.0% | |
| ! | ACGTAGGTTTTCGATGTCGA+TGG | + | tig0036392:22880-22899 | Msa1455620:CDS | 45.0% |
| AAGCCAAGGAAAAGTTGTGC+TGG | + | tig0036392:22920-22939 | Msa1455620:CDS | 45.0% | |
| ACTCTCTTCAATCTTGTCGG+TGG | - | tig0036392:22974-22993 | Msa1455620:intergenic | 45.0% | |
| !!! | TATTTTTTCTTTAATAATTT+TGG | - | tig0036392:21401-21420 | Msa1455620:intergenic | 5.0% |
| CTCGTGAACTCAATTGGGAG+GGG | - | tig0036392:20877-20896 | Msa1455620:intergenic | 50.0% | |
| CCTCGTGAACTCAATTGGGA+GGG | - | tig0036392:20878-20897 | Msa1455620:intergenic | 50.0% | |
| TCCTCGTGAACTCAATTGGG+AGG | - | tig0036392:20879-20898 | Msa1455620:intergenic | 50.0% | |
| ! | CATGGTGCAGTCTTGTCTTG+TGG | - | tig0036392:22600-22619 | Msa1455620:intergenic | 50.0% |
| GGAAATAGACCAAGCAGACC+TGG | + | tig0036392:22851-22870 | Msa1455620:CDS | 50.0% | |
| ! | CCACCAGCACAACTTTTCCT+TGG | - | tig0036392:22926-22945 | Msa1455620:intergenic | 50.0% |
| CCAAGGAAAAGTTGTGCTGG+TGG | + | tig0036392:22923-22942 | Msa1455620:CDS | 50.0% | |
| GAGTCCTCTGCAGAGAATGA+AGG | + | tig0036392:23193-23212 | Msa1455620:CDS | 50.0% | |
| GCTACCTTCATTCTCTGCAG+AGG | - | tig0036392:23200-23219 | Msa1455620:intergenic | 50.0% | |
| ATACTAGCAGTTGCACCAGC+AGG | - | tig0036392:23267-23286 | Msa1455620:intergenic | 50.0% | |
| CCCTCCCAATTGAGTTCACG+AGG | + | tig0036392:20875-20894 | Msa1455620:intron | 55.0% | |
| CGTATCAGTCCAGGTCTGCT+TGG | - | tig0036392:22863-22882 | Msa1455620:intergenic | 55.0% | |
| GCAGACCTGGACTGATACGT+AGG | + | tig0036392:22864-22883 | Msa1455620:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0036392 | gene | 20443 | 23432 | 20443 | ID=Msa1455620;Name=Msa1455620 |
| tig0036392 | mRNA | 20443 | 23432 | 20443 | ID=Msa1455620-mRNA-1;Parent=Msa1455620;Name=Msa1455620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=136|1|1|1|0.66|0.5|4|99|562 |
| tig0036392 | exon | 20443 | 20669 | 20443 | ID=Msa1455620-mRNA-1:exon:20340;Parent=Msa1455620-mRNA-1 |
| tig0036392 | exon | 20958 | 21043 | 20958 | ID=Msa1455620-mRNA-1:exon:20341;Parent=Msa1455620-mRNA-1 |
| tig0036392 | exon | 21136 | 21720 | 21136 | ID=Msa1455620-mRNA-1:exon:20342;Parent=Msa1455620-mRNA-1 |
| tig0036392 | exon | 22407 | 23432 | 22407 | ID=Msa1455620-mRNA-1:exon:20343;Parent=Msa1455620-mRNA-1 |
| tig0036392 | five_prime_UTR | 20443 | 20578 | 20443 | ID=Msa1455620-mRNA-1:five_prime_utr;Parent=Msa1455620-mRNA-1 |
| tig0036392 | CDS | 20579 | 20669 | 20579 | ID=Msa1455620-mRNA-1:cds;Parent=Msa1455620-mRNA-1 |
| tig0036392 | CDS | 20958 | 21043 | 20958 | ID=Msa1455620-mRNA-1:cds;Parent=Msa1455620-mRNA-1 |
| tig0036392 | CDS | 21136 | 21720 | 21136 | ID=Msa1455620-mRNA-1:cds;Parent=Msa1455620-mRNA-1 |
| tig0036392 | CDS | 22407 | 23333 | 22407 | ID=Msa1455620-mRNA-1:cds;Parent=Msa1455620-mRNA-1 |
| tig0036392 | three_prime_UTR | 23334 | 23432 | 23334 | ID=Msa1455620-mRNA-1:three_prime_utr;Parent=Msa1455620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
