AlfalfaGEDB | MS.gene30556

M. sativa cultivar XinJiangDaYe / MS.gene30556

KEGG: -
GO: -
PFAM: PF13460.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30556.t1	XP_003606716.2	95.3	553	26	0	1	553	1	553	1.70E-210	742.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30556.t1	Q9STF2	56.1	545	174	9	18	553	22	510	5.0e-115	416.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30556.t1	G7JCF2	95.3	553	26	0	1	553	1	553	1.2e-210	742.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene30556	0.837127	6.24E-57	-1.69E-46
MS.gene049171	MS.gene30556	0.930296	2.01E-93	-1.69E-46
MS.gene049173	MS.gene30556	0.881027	3.38E-70	-1.69E-46
MS.gene049217	MS.gene30556	0.902811	6.62E-79	-1.69E-46
MS.gene049222	MS.gene30556	0.92076	8.50E-88	-1.69E-46
MS.gene049232	MS.gene30556	0.87076	1.14E-66	-1.69E-46
MS.gene049281	MS.gene30556	-0.811306	7.48E-51	-1.69E-46
MS.gene049285	MS.gene30556	0.948508	8.22E-107	-1.69E-46
MS.gene049320	MS.gene30556	0.947399	7.25E-106	-1.69E-46
MS.gene04938	MS.gene30556	0.840994	6.22E-58	-1.69E-46

Showing 1 to 10 of 273 entries

Previous1 2 3 4 5…28Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30556.t1	MTR_4g064750	96.383	553	20	0	1	553	1	553	0.0	1072
MS.gene30556.t1	MTR_4g025720	72.368	152	17	2	341	492	18	144	6.68e-50	171
MS.gene30556.t1	MTR_2g098015	92.063	63	5	0	342	404	5	67	1.86e-17	77.0
MS.gene30556.t1	MTR_4g068970	26.199	271	170	9	91	345	71	327	7.28e-17	84.3

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30556.t1	AT3G46780	57.459	543	170	12	18	553	22	510	0.0	537
MS.gene30556.t1	AT3G18890	24.806	258	166	8	102	345	84	327	7.93e-15	78.2

Showing 1 to 2 of 2 entries

Previous1Next

Find 121 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATTGGATGAAAGAGT+GGG	0.597103	4.2:+40465449	None:intergenic
AAAGATAGAGGAGAAACCGA+AGG	0.601183	4.2:-40462525	MS.gene30556:CDS
AAAGTCCAGGATAGCATCGT+TGG	0.579546	4.2:-40463709	MS.gene30556:CDS
AAAGTTCGTCTACACGCTTC+AGG	0.292266	4.2:+40463222	None:intergenic
AACAAATCAAGATCCTGATG+AGG	0.661904	4.2:-40462783	MS.gene30556:CDS
AACCCTTTCGGATTCGACTT+TGG	0.404280	4.2:-40465278	MS.gene30556:CDS
AACTAAGAAGATGGAAGAAG+AGG	0.532351	4.2:-40462966	MS.gene30556:CDS
AACTCTAATAATAACCCTTT+CGG	0.379619	4.2:-40465290	MS.gene30556:CDS
AAGAACTCTTGAATAGACAA+AGG	0.641968	4.2:+40463977	None:intergenic
AAGCAGTGTGAGTAAACCAA+AGG	0.625751	4.2:-40462558	MS.gene30556:CDS

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATTGGATGAAAGAGT+GGG	+	chr4.2:40462472-40462491	None:intergenic	30.0%
AAGAACTCTTGAATAGACAA+AGG	+	chr4.2:40463944-40463963	None:intergenic	30.0%
AATATTAGGAAGTTAGCTAG+GGG	-	chr4.2:40463395-40463414	MS.gene30556:intron	30.0%
AATGACATAAACATCAACGT+CGG	+	chr4.2:40463117-40463136	None:intergenic	30.0%
AGTTTGATGAACCATTTGTT+TGG	+	chr4.2:40462612-40462631	None:intergenic	30.0%
CAACAATTAAAACATGACAC+TGG	-	chr4.2:40463544-40463563	MS.gene30556:intron	30.0%
CCTAATATTTCTTGTTCCAT+GGG	+	chr4.2:40463384-40463403	None:intergenic	30.0%
CTTAGGATGAGATAAAGAAT+TGG	+	chr4.2:40462485-40462504	None:intergenic	30.0%
GAAATATTAGGAAGTTAGCT+AGG	-	chr4.2:40463393-40463412	MS.gene30556:intron	30.0%
GAAGAAAAAGACCAAACAAA+TGG	-	chr4.2:40462598-40462617	MS.gene30556:CDS	30.0%

Showing 1 to 10 of 216 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	40462463	40465477	40462463	ID=MS.gene30556
chr4.2	mRNA	40462463	40465477	40462463	ID=MS.gene30556.t1;Parent=MS.gene30556
chr4.2	exon	40465037	40465477	40465037	ID=MS.gene30556.t1.exon1;Parent=MS.gene30556.t1
chr4.2	CDS	40465037	40465477	40465037	ID=cds.MS.gene30556.t1;Parent=MS.gene30556.t1
chr4.2	exon	40463847	40464302	40463847	ID=MS.gene30556.t1.exon2;Parent=MS.gene30556.t1
chr4.2	CDS	40463847	40464302	40463847	ID=cds.MS.gene30556.t1;Parent=MS.gene30556.t1
chr4.2	exon	40463668	40463736	40463668	ID=MS.gene30556.t1.exon3;Parent=MS.gene30556.t1
chr4.2	CDS	40463668	40463736	40463668	ID=cds.MS.gene30556.t1;Parent=MS.gene30556.t1
chr4.2	exon	40463218	40463276	40463218	ID=MS.gene30556.t1.exon4;Parent=MS.gene30556.t1
chr4.2	CDS	40463218	40463276	40463218	ID=cds.MS.gene30556.t1;Parent=MS.gene30556.t1
chr4.2	exon	40462463	40463099	40462463	ID=MS.gene30556.t1.exon5;Parent=MS.gene30556.t1
chr4.2	CDS	40462463	40463099	40462463	ID=cds.MS.gene30556.t1;Parent=MS.gene30556.t1

Gene Sequence

>MS.gene30556

ATGGTTCCCACTCTTTCATCCAATTCTTTATCTCATCCTAAGTTGAATTTTAGGAACCAAACAAGGTTCAATGTCTATGCTAAAAAATCTGGAGGAGGGTCATTTCCATCATTTGGATTAGGAAAACCAAAAGATGAAGAAAAAGACCAAACAAATGGTTCATCAAACTCTAATAATAACCCTTTCGGATTCGACTTTGGAAAATTGCCTGATGTGACTTCTTTGATCCCTGTTGGGAGCAAAAACGGTTCTTTGCCAGGTTTGTCATTTGGAAGTCCTGCAAGGAAGAAGGATCCTTCGACGGTTTTTGTTGCCGGTGCTACTGGTCAAGCTGGTATCCGCATTGCACAGACTTTGCTTAGGGAAGGGTTTAGTGTTAGAGCTGGTGTTCCTGAACTTGATTCTGCTCAGGAATTGGCTCGTCTTGCTTCTCAATATAAGGTAATTTAATTTAACTTCTTAATCAATCATTAATTTGGATTATTAATGATCAGGATCCTATAAAAACGATGTTGCATACAATCTAGTATCAATGGCGTGTGTCGGGTGTCTGACATGTGTTTGACACGACATCTGATATCTCGACACATGTAGTTAGATTTTAATCACTGACATTTTCTTTGGTTGCATGTTTGTGTCTAAGTATCGTGTCCGACGTTGATGTTTATGTCATTGCTTGATTTCATCACTAAACTCAAAAGGGTCACTAGTGTGAACCTTCTTGTATTGCTCTCTAGCTTCTCTTCTTTAAATTAAACCTTTTCCTTAAACATACTCTTATTTTCTCAATTAATTACACTTCTAGAGGAATGATAAAAGGATCAAATTGGCCTTTGTGTAATGGAAGCCTATCAAATGCAGCTGATGAATTGATTAATGTGATGTAGATTTTATCTGTTATATCTTGATAAAAAAGTTCCCATGGAACAAGAAATATTAGGAAGTTAGCTAGGGGGAAGGGATCCCATGTAATTTCTTGCTCCAAAGGTTTGAAAGATTAAATTTAAGAGTTTTTTTCCCTACTTACTCAATTTTTTTATCTAACAGGTAATTTCATGGTTGACAATTTTATAGTAGTATTCAACAATTAAAACATGACACTGGACTGTTGGATAATTTTTTTATGAAATTTTTCATTGGAGTTAATTGGGGATACTAATGCATGCTCAATTCAGATTATATCAAACGAAGAGGCAAAGCGTCTCAATGCTGTGCAGTCAAGCTTTGATGATGCAGACTCCATAGCAAAAGCAATAGGCAATGCAACCAAAGTGGTTGTCACCATTGGTCTCACAGAGAACGGTCCAGCAACTGAGGTCTCCACGTCAGATGCCTTGCAAGTAATTCAGGCTGCTCAGCTAGCAGGCGTAGACCACGTTGCAGTCATCTACGATGAAAACAACGGCGTCAGCACCTCAACCTACAATGTACTTGATGGCATCTCCTCTTTCTTCAACAATATCTTCTCCAAGTCTCAACCTTTGTCTATTCAAGAGTTCTTGCAGAAAGTGGTTGAAACAGATGTCAAATATACCTTAATCAAAACATGTTTGACCGATGATTTTGCGCCGGAGAGTTCTTATAATGTGGTTGTCTTAGGCGAAGAAAACACCGGTTCGAACGACTATAAAGTAATGTAATGTATGCGATAATATCTTAATGAAATTGTCCTTTTTTTAACCTTCCTTTACTTTCTTATTTGTTGCTAATACTTTTTGAGAAAATGATGGTTGTTATATAGGTAACAAAGTCCAGGATAGCATCGTTGGTGGCTGATGTCTTCTCCAACACACAGGTTGCAGAAAACAAGGTATCTGTTTTACATTAGCTGGATAATGCATACTGTAGTTTGATGTCTAGTAAGTCGATTAGCATGGACTTCGTTCATCAGCCATCTCTTCAACTGCACCTTGGTCATTGGATTAATCTAATAGTTTAGAGAATTATATCTCGACCAAACAACTTAGGTGCAGAGTTGCACGAGCTTAGAGAGTTTGTATTGAAAGAAATTCTTCTTTTGCTTAGTTTTGTTTATAAATAATCATACAATAAAATAATTTTTTTTCTCACTTTTCCTATATATTTTATAAAAAAGTTTCGAAAATAAAGCAAAGCAGAAGTAAAATTATACTAATCAAAGCAGAAAAACAATAGCTAAAATCAAATGGACATTAAGATTGAAGCTTTTTATTGACCAATAGGTTGTGCAAGTGTACTCGGACCCAAATGCTCCCCTGAAGCGTGTAGACGAACTTTTCAGGTAAACAACTTTAACATAGCTAGTTGTTTGTGTTTTACAACATCAATAATAGGTGAATAATTTTGGTTTTTCTTCTAGTTGAGGAGGATCATTATGTTATTTGCAATTTTCTTTACAGCACTATTCCGGAAGACGGAAGAAGGAAAGCCTATGCTGAAATATTGGAGAAAGCCAAAGCAGAGGAAGAGGCAAGAGTGAAAGCTGAAAAGGCACGCGAAACTGCTGCAACAACTAAGAAGATGGAAGAAGAGGCACTGAAGCTTTCAAAACAAGAAGCACAGACTTCTAATCTAGCTAAAGAAGATCAAGAGAAGGCAGAGGCAACTGGAACTTCGGTAGAAGACATTTTGAACAAGGCTAAAGCTTTTCGTGCAGGGTTTTCAAGGCAAAAGTTAAGCTCACAGGTTGCTACAACAAATCAAGATCCTGATGAGGATGAGAAACCAAAGTTGCAACCGGCAAAAGGTTTTGGTGCAGGGTTTTCATGGCAAAAGTTCAGCTCACAGGTTGCTACAGCAATCCAAAAGCCTGATGAGGATGAGAACCCAAAGGTGCAAGTTGCCACCGTAAGAGGACAGGCGAAGGCTCGGAGTCTCATTCCTAACAAAGCAGTGACTAAACAAACAACAACTCCAAGAAGCAGTGTGAGTAAACCAAAGGAGGAAAAAAGAAAGATAGAGGAGAAACCGAAGGAGGTTAGGAAGGTATTTGGTGGCCTGTTCAAACAAGAGACTATCTATATTGATGATGACTAG

Protein sequence

>MS.gene30556.t1

MVPTLSSNSLSHPKLNFRNQTRFNVYAKKSGGGSFPSFGLGKPKDEEKDQTNGSSNSNNNPFGFDFGKLPDVTSLIPVGSKNGSLPGLSFGSPARKKDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELDSAQELARLASQYKIISNEEAKRLNAVQSSFDDADSIAKAIGNATKVVVTIGLTENGPATEVSTSDALQVIQAAQLAGVDHVAVIYDENNGVSTSTYNVLDGISSFFNNIFSKSQPLSIQEFLQKVVETDVKYTLIKTCLTDDFAPESSYNVVVLGEENTGSNDYKVTKSRIASLVADVFSNTQVAENKVVQVYSDPNAPLKRVDELFSTIPEDGRRKAYAEILEKAKAEEEARVKAEKARETAATTKKMEEEALKLSKQEAQTSNLAKEDQEKAEATGTSVEDILNKAKAFRAGFSRQKLSSQVATTNQDPDEDEKPKLQPAKGFGAGFSWQKFSSQVATAIQKPDEDENPKVQVATVRGQAKARSLIPNKAVTKQTTTPRSSVSKPKEEKRKIEEKPKEVRKVFGGLFKQETIYIDDD