AlfalfaGEDB | MS.gene98139

M. sativa cultivar XinJiangDaYe / MS.gene98139

KEGG: -
GO: -
PFAM: PF04755.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98139.t1	XP_013454493.1	94.4	232	13	0	47	278	41	272	1.40E-117	432.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98139.t1	Q8W4F1	75.0	224	54	1	56	277	59	282	1.5e-91	337.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98139.t1	A0A072UFJ1	94.4	232	13	0	47	278	41	272	1.0e-117	432.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene98139	0.874662	5.67E-68	-1.69E-46
MS.gene049171	MS.gene98139	0.910257	2.29E-82	-1.69E-46
MS.gene049173	MS.gene98139	0.838761	2.37E-57	-1.69E-46
MS.gene049217	MS.gene98139	0.904398	1.28E-79	-1.69E-46
MS.gene049222	MS.gene98139	0.940687	1.52E-100	-1.69E-46
MS.gene049232	MS.gene98139	0.871032	9.31E-67	-1.69E-46
MS.gene049285	MS.gene98139	0.922535	8.67E-89	-1.69E-46
MS.gene049320	MS.gene98139	0.899468	1.92E-77	-1.69E-46
MS.gene04939	MS.gene98139	0.816537	5.25E-52	-1.69E-46
MS.gene049427	MS.gene98139	0.82659	2.50E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98139.t1	MTR_4g005390	89.247	279	22	3	1	278	1	272	4.04e-178	491

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98139.t1	AT2G46910	70.356	253	68	3	32	277	30	282	3.23e-123	353

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Find 60 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCGTGGTAGTATTGC+TGG	0.362518	4.1:-89212853	None:intergenic
AAATATTAGTGAACAACTGC+AGG	0.525549	4.1:+89212819	MS.gene98139:CDS
AACAGCAGATTGCATAGCCA+TGG	0.553271	4.1:-89210317	None:intergenic
AAGGAAGATTAGCAGCAGCT+TGG	0.532811	4.1:-89210749	None:intergenic
AATGTGGAAGGAAGGAACAT+GGG	0.663999	4.1:+89210648	MS.gene98139:CDS
ACAAATTAGGAATGCTCCAG+CGG	0.613575	4.1:-89210952	None:intergenic
ACAGTTACAATGTTAATAGG+AGG	0.583678	4.1:+89210278	MS.gene98139:CDS
ACATTGGTGCAGGAACAAGA+AGG	0.688213	4.1:+89212278	MS.gene98139:intron
AGAGTCCTCTTTGTGTGTCT+TGG	0.357425	4.1:-89210492	None:intergenic
AGATTGCATAGCCATGGAAA+TGG	0.503286	4.1:-89210311	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAGAGGGAAAATGA+TGG	-	chr4.1:89210818-89210837	None:intergenic	30.0%
AAATATTAGTGAACAACTGC+AGG	+	chr4.1:89212819-89212838	MS.gene98139:CDS	30.0%
AATGGTAATATATCTGCATG+AGG	+	chr4.1:89213037-89213056	MS.gene98139:intron	30.0%
ACAGTTACAATGTTAATAGG+AGG	+	chr4.1:89210278-89210297	MS.gene98139:CDS	30.0%
AGAATGATCATAGTTATCTG+GGG	-	chr4.1:89211049-89211068	None:intergenic	30.0%
AGTTGTGTAAATTAAAGACC+CGG	+	chr4.1:89211373-89211392	MS.gene98139:intron	30.0%
ATAATATTGCGGAAATTGAG+GGG	-	chr4.1:89211095-89211114	None:intergenic	30.0%
ATCAATCAATCATCAATGTC+AGG	+	chr4.1:89210623-89210642	MS.gene98139:intron	30.0%
CACCACTATGCATTAATAAT+AGG	+	chr4.1:89210239-89210258	MS.gene98139:CDS	30.0%
CACTTAAGCTTAATTAGTTC+AGG	-	chr4.1:89212215-89212234	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	89210193	89213379	89210193	ID=MS.gene98139
chr4.1	mRNA	89210193	89213379	89210193	ID=MS.gene98139.t1;Parent=MS.gene98139
chr4.1	exon	89210193	89210345	89210193	ID=MS.gene98139.t1.exon1;Parent=MS.gene98139.t1
chr4.1	CDS	89210193	89210345	89210193	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1
chr4.1	exon	89210442	89210555	89210442	ID=MS.gene98139.t1.exon2;Parent=MS.gene98139.t1
chr4.1	CDS	89210442	89210555	89210442	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1
chr4.1	exon	89210645	89210779	89210645	ID=MS.gene98139.t1.exon3;Parent=MS.gene98139.t1
chr4.1	CDS	89210645	89210779	89210645	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1
chr4.1	exon	89210884	89210979	89210884	ID=MS.gene98139.t1.exon4;Parent=MS.gene98139.t1
chr4.1	CDS	89210884	89210979	89210884	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1
chr4.1	exon	89212290	89212370	89212290	ID=MS.gene98139.t1.exon5;Parent=MS.gene98139.t1
chr4.1	CDS	89212290	89212370	89212290	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1
chr4.1	exon	89212802	89212888	89212802	ID=MS.gene98139.t1.exon6;Parent=MS.gene98139.t1
chr4.1	CDS	89212802	89212888	89212802	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1
chr4.1	exon	89213126	89213181	89213126	ID=MS.gene98139.t1.exon7;Parent=MS.gene98139.t1
chr4.1	CDS	89213126	89213181	89213126	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1
chr4.1	exon	89213265	89213379	89213265	ID=MS.gene98139.t1.exon8;Parent=MS.gene98139.t1
chr4.1	CDS	89213265	89213379	89213265	ID=cds.MS.gene98139.t1;Parent=MS.gene98139.t1

Gene Sequence

>MS.gene98139

ATGGATTTGGCTCTCAATTTCAATTTTAGTTTCAGTTCATCACCACCACCACTATGCATTAATAATAGGAGAAGCCATACACTCTACAGTTACAATGTTAATAGGAGGAAATCAAAATCCATTTCCATGGCTATGCAATCTGCTGTTACCCAGGTAAGGTAAGGTTTCCATTCTAATTATACATACATACATACATAGATAGATTGGGTTAATCACTTTAATTCATTCATTCATCATTTGATTTTGAAGGCATATGATTCTGAGTTAGAAAACAAGAAGCATGAGCTTTTAACATCTCTCCAAGACACACAAAGAGGACTCTTAACAACTCCTCTTCAACGTTCTTCTATTGAGGAAGCTCTTGTTAGTTACTACTACTACTACTACTATTTTCATTCAATTTCTCGCATTCTTTCTTTCTTTCTTTATAATCAATCAATCATCAATGTCAGGTGAATGTGGAAGGAAGGAACATGGGTCACCCAATTGATTTTAACAAGTTGGATGGAACTTGGCGCTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTCTTCCAAGCTGCTGCTAATCTTCCTTTCTTTCAAGTACTGTATCCATCTATTTCTTCCTTCCTTCCTTACCATCATTTTCCCTCTTTTCTTTCTTACCATTTTTATTTTTCACTTTCTTTCCTTCTGTCATGAGATAGGTCGGACAAATATTTCAGAAATTTGAATGCCGTGATAGCTCCAATGGAGGTGTTATTCGCAATGTTGTCCGCTGGAGCATTCCTAATTTGTTTGAGGTAATTCCTTTACTTTTTACTTTCTTACTTACCTTCTTGCAATCAACTTGTTCCTACTTTTGATTTCCCCAGATAACTATGATCATTCTTAAAATTTTCTATTGTTTCATTCCCCCTCAATTTCCGCAATATTATGCACAGTTTAGCTACTCCTCTATTCATACTTGATTATTCTTTCTTTGAGTTCAAGCTGGCAAATAAATGTCATTTTTATTACTGTTACTAGTGATTGCTTTTATATAATTGAAACTGCATATGCATTGCTAGGATTTGGTTTTTTAGGCTTTTGAGTGAGTATGACTATATAAGTATACTTCATCCTGGACTAGGAACTAATAACGTATCTTGAACATGACACATGCTATAACAGTTTAGCCTTCATCGCAGTAGACAAGTTGTGTAAATTAAAGACCCGGGATTGCGTATGCTAGCTAAGAATTTCACAGTTTTTATCTTAAAGGGTGTGTTAAAATATGCAAGAAAGTGAAATAGTATCATTACTCAAAAGGCTCAAAAGTCAAAATCTAGTTCCTTTTATTCTAGGAGTCGCACGTACTGCTCTCTTGCTAACACCTAGCCTAACCTTAGATGGTTGGAAAAACTAAATTGGATGAAATACTTATTCTTGAGGTCTGTTGCTCTCACCTTTGAGAAGTGGAATATTATTAAGCACTAGAGGGTTGGATACAAATGCATCCAATATAAGTTACGAGCAAAGAAAACGGGGCAGTATGCCCGAGTTGAGCAAAGAAGTGGTCACGCTTATTTGATTCTCAAGGAGCATGGCAGAGAATAACTGTCCAGTTTGGAAAGTACATTAGCTCATTAATATCTTCTAGGAGAATTCGGAGAGCAAGATATACACTGATTGACATTTCTTGACCATATAGAAAACAACTAGGGAGCCGTTGATGAAGTGGCCATTGTGATTTCTCAAAATTCCTCCACAAGAGGAAGTGTCGCTCCTAGTAGAATGAGATCCCCTACACAAGAGGAAGTGTCGCTCCTAGTAGAATGAGATCCATCCACATCCATCTTGAGAACATTTAGATATGTTGTTATCTGTTTACAATAATATTAGTTTTTATAATAACATGTAAAAAAATGGAATAATTTGCTATATCAAGTTAGCCTCAACGGTTCATCTTTGAATCCCTTTCTGATTTCTAAAAGCTGTAGCATCTTTCACTTTCAGCTTTGAAGAAATATTGACAATATATCTTTGATTTTCCCCTGAACTAATTAAGCTTAAGTGTCCTTCCTTCGTCAGCTTGAACATGTTTTCTTTGGTTGAGATAACATTGGTGCAGGAACAAGAAGGTGCTACATTGGTTGTATCTGCCAAGTTCACTCTTGTATCGGTCCGAAATATTTACCTTCAGTTTCAAGAGGTAATCATTTTAATATGCATGAACATTTTATTACTTTGGTTGAGATACAATGTACATAAGCAGATGCCGATATTTTGCAACATATAATTTCTCTTCTCTTGTTATTAATTAAAAGGTTGGAGAGATCATCCACGTTCAATTTGCTTTTGATATTCATTACAATTAATGACATTTTTTCCATGCCCCATTTCCATATTTTATTATATGGTTTACTATTACTCCTCAAGAAATGTTGGAGCATAAAACATATATGCTAGGCATAATATAATCTGATTTGTCATTATGATGGTGATCCCTGAAATTTCACTTCCCCATCATTAAGATTAAGAAAAGGATTATCATACATGATTTATATTCTGATATGAATGCGACATTGCCTTCTTTGGTTGGTATGATGCTTACATAACAAATGAGCAATTTATAACTGGCAGATCTCAGTTCAAGATATAAATATTAGTGAACAACTGCAGGCTCTAATATCTCCAGCAATACTACCACGATCTTTTATAAGTTTGCAGGTAAATCAACCGTAGTTTAATCTGTTGCATTTTTCATTTGTGTGCACTGTCGTACTGGCATTCGATATGTGATACCATTGACACTAATAACTTATGAAACTGTTTCTGCATCAAATCAAAACTTTGGTGATATATTTGTGAACGGCCTAATGGTAATATATCTGCATGAGGATCAATGCAGACAAGATATGCATACGACATAATTGTTAACTTATACAGCGTGTTTTTCTCTTGCAGATATTGCAATATCTCCGTGCTTTCAAAGCTCAATTTCCCGTGAGGGATCCTGGAAGGTATATATATGATGGGTCACTTTGTTGAATTAATTAGTGTCTTTATTGGAAAATTACGAGTATAATGCTCTTTTGGATTGTAGGGAATCAGTAGGAGGATTATATTATCTGAGTTATTTGGATGATAATATGCTTTTGGGCCGTGCTGTTGGTGGAGGAGGAGTATTTGTGTTTACGAGAGCTCAATCACTTTACTGA

Protein sequence

>MS.gene98139.t1

MDLALNFNFSFSSSPPPLCINNRRSHTLYSYNVNRRKSKSISMAMQSAVTQAYDSELENKKHELLTSLQDTQRGLLTTPLQRSSIEEALVNVEGRNMGHPIDFNKLDGTWRLQYTSAPDVLILFQAAANLPFFQVGQIFQKFECRDSSNGGVIRNVVRWSIPNLFEEQEGATLVVSAKFTLVSVRNIYLQFQEISVQDINISEQLQALISPAILPRSFISLQILQYLRAFKAQFPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY