AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33825


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33825.t1 MTR_4g088615 96.382 304 10 1 1 304 1 303 0.0 593
MS.gene33825.t1 MTR_4g088615 95.288 191 9 0 31 221 30 220 2.65e-123 353
MS.gene33825.t1 MTR_8g105340 32.727 165 94 4 148 304 82 237 3.06e-16 77.4
MS.gene33825.t1 MTR_8g105340 32.727 165 94 4 148 304 91 246 3.44e-16 77.4
MS.gene33825.t1 MTR_1g032450 32.727 165 94 4 148 304 89 244 3.77e-16 77.4
MS.gene33825.t1 MTR_8g093680 30.065 153 107 0 144 296 341 493 9.44e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33825.t1 AT2G33800 70.943 265 69 3 45 304 42 303 1.41e-129 371
MS.gene33825.t1 AT1G64880 33.553 152 101 0 145 296 355 506 1.48e-18 86.3
MS.gene33825.t1 AT2G41840 31.515 165 96 3 148 304 96 251 5.51e-16 77.0
MS.gene33825.t1 AT1G58380 31.515 165 96 3 148 304 95 250 6.37e-16 76.6
MS.gene33825.t1 AT1G58684 31.515 165 96 3 148 304 95 250 7.82e-16 76.6
MS.gene33825.t1 AT1G58983 31.515 165 96 3 148 304 95 250 7.82e-16 76.6
MS.gene33825.t1 AT1G59359 31.515 165 96 3 148 304 95 250 7.82e-16 76.6
MS.gene33825.t1 AT3G57490 30.303 165 98 3 148 304 87 242 1.05e-15 76.3

Find 116 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGAGCTGATGGAGATTA+TGG 0.212582 4.4:-24203426 MS.gene33825:intron
GAGGGAAACAAATGAGGTTT+AGG 0.287989 4.4:-24204916 MS.gene33825:CDS
GAATGTGAGTTTGTGGGTTG+TGG 0.290893 4.4:+24205315 None:intergenic
GGAGAGAGAGAATGGGGTTT+TGG 0.295722 4.4:+24205285 None:intergenic
TTGAAGGGAAGGTCTTCTTC+TGG 0.304660 4.4:+24205205 None:intergenic
TTCGACTGGACCGTCGTCTA+TGG 0.308957 4.4:+24205144 None:intergenic
ATGAAGCCTTCCGGGATTTC+CGG 0.310489 4.4:+24205178 None:intergenic
CGGGATTTCCGGTGGGTTGA+AGG 0.323166 4.4:+24205189 None:intergenic
AAGGATACCGGGTTCGGTTC+GGG 0.333237 4.4:-24205016 MS.gene33825:CDS
GAGAGAGTGGAGAGAGAGAA+TGG 0.337375 4.4:+24205277 None:intergenic
GAAGGATACCGGGTTCGGTT+CGG 0.346246 4.4:-24205017 MS.gene33825:CDS
GGATCCCTATGGAAGAATTA+TGG 0.351460 4.4:-24203200 MS.gene33825:CDS
TGAAGGGAAGGTCTTCTTCT+GGG 0.352947 4.4:+24205206 None:intergenic
AATGTGAGTTTGTGGGTTGT+GGG 0.361016 4.4:+24205316 None:intergenic
CCTGGTACCGGAGTTATTGC+AGG 0.364105 4.4:-24203372 MS.gene33825:CDS
GTGGTGGAATGAAGCCTTCC+GGG 0.382928 4.4:+24205170 None:intergenic
AGAGAAACAAGAGGAGGAGG+AGG 0.387274 4.4:+24205345 None:intergenic
GCCGGTGTTGAGAATGCTTT+GGG 0.389280 4.4:-24203321 MS.gene33825:CDS
AGGGTAACTAAGGTTGTTAA+AGG 0.390142 4.4:-24204938 MS.gene33825:CDS
TTTAGGGCTATTGTTGTTGT+TGG 0.390533 4.4:-24204899 MS.gene33825:CDS
AGAGAGTGGAGAGAGAGAAT+GGG 0.393555 4.4:+24205278 None:intergenic
CACTGCAGCTACAGTTGCTC+TGG 0.409585 4.4:+24203263 None:intergenic
GAGAGAGAAACAAGAGGAGG+AGG 0.418200 4.4:+24205342 None:intergenic
AGTGAGAATTGTTCTTGAAA+TGG 0.420916 4.4:-24203343 MS.gene33825:CDS
GGTGGTGGAATGAAGCCTTC+CGG 0.420960 4.4:+24205169 None:intergenic
TAAGAGATGGGTTGGAAGAA+AGG 0.426001 4.4:-24204976 MS.gene33825:CDS
AAGAGATGGGTTGGAAGAAA+GGG 0.427070 4.4:-24204975 MS.gene33825:CDS
ACAAGAGGAGGAGGAGGAAG+AGG 0.428653 4.4:+24205351 None:intergenic
GGAAAAGATAAGAGATGGGT+TGG 0.430497 4.4:-24204984 MS.gene33825:CDS
AGAGAATTGAGAGCGGAAGA+AGG 0.444378 4.4:+24205394 None:intergenic
AGGGAAACAAATGAGGTTTA+GGG 0.444508 4.4:-24204915 MS.gene33825:CDS
TGAGAGGGAATGTGAGTTTG+TGG 0.452351 4.4:+24205308 None:intergenic
ATGCTTAGACCCGCTTCTCC+TGG 0.460234 4.4:-24203390 MS.gene33825:CDS
ATTAGAATTAATTACCTATG+AGG 0.463119 4.4:+24204749 None:intergenic
ATTTCATCTTCGTCTTCGAC+TGG 0.464676 4.4:+24205130 None:intergenic
GGCCGGTGTTGAGAATGCTT+TGG 0.464816 4.4:-24203322 MS.gene33825:CDS
AAGAAGGAAAAGATAAGAGA+TGG 0.465607 4.4:-24204989 MS.gene33825:CDS
TTTCCGGTGGGTTGAAGGGA+AGG 0.470346 4.4:+24205194 None:intergenic
GGGAATTGCTTTGACGTTGA+AGG 0.472379 4.4:+24205255 None:intergenic
TACAGTGGTGTTAGTGTGCT+TGG 0.475022 4.4:-24205073 MS.gene33825:CDS
GACGAGTTGGTGTTGGTGTT+GGG 0.477749 4.4:-24204865 MS.gene33825:CDS
GCGAGGAAGGATACCGGGTT+CGG 0.479438 4.4:-24205022 MS.gene33825:CDS
TCAAGTGAGGAGGGTAACTA+AGG 0.484987 4.4:-24204948 MS.gene33825:CDS
GTTCGGTTCGGGTGCGAAGA+AGG 0.486778 4.4:-24205005 MS.gene33825:CDS
GAGAGGGAATGTGAGTTTGT+GGG 0.488658 4.4:+24205309 None:intergenic
GGACGAGTTGGTGTTGGTGT+TGG 0.490278 4.4:-24204866 MS.gene33825:CDS
GTTGTCTAATTCATCGGAGG+TGG 0.507188 4.4:+24205234 None:intergenic
GGGAAGGTCTTCTTCTGGGA+TGG 0.507275 4.4:+24205210 None:intergenic
CTTCAACCCACCGGAAATCC+CGG 0.509862 4.4:-24205188 MS.gene33825:CDS
GCCGCATACGAAGAGCTATA+CGG 0.511899 4.4:-24205103 MS.gene33825:CDS
GAGAGTGGAGAGAGAGAATG+GGG 0.512697 4.4:+24205279 None:intergenic
AAGACGGCGAGGAAGGATAC+CGG 0.519140 4.4:-24205028 MS.gene33825:CDS
TACTTCCATAATTCTTCCAT+AGG 0.523427 4.4:+24203195 None:intergenic
AGAAGGAAAAGATAAGAGAT+GGG 0.524914 4.4:-24204988 MS.gene33825:CDS
TTAAAGGAGGGAAACAAATG+AGG 0.524916 4.4:-24204922 MS.gene33825:CDS
AAAGGGTTGTTCAAGTGAGG+AGG 0.526162 4.4:-24204958 MS.gene33825:CDS
CTTCGCACCCGAACCGAACC+CGG 0.526945 4.4:+24205009 None:intergenic
AAGCCTTCCGGGATTTCCGG+TGG 0.529062 4.4:+24205181 None:intergenic
ATGTGAGTTTGTGGGTTGTG+GGG 0.529517 4.4:+24205317 None:intergenic
GGGATTTCCGGTGGGTTGAA+GGG 0.530494 4.4:+24205190 None:intergenic
AAAAGTCAAGTACTTGGTCA+TGG 0.539176 4.4:+24204772 None:intergenic
GTAACTAAGGTTGTTAAAGG+AGG 0.540545 4.4:-24204935 MS.gene33825:CDS
AGAAATCTGCTATTAATGCT+AGG 0.542732 4.4:-24204814 MS.gene33825:CDS
AAGGGTTGTTCAAGTGAGGA+GGG 0.544011 4.4:-24204957 MS.gene33825:CDS
AAGAAAGGGTTGTTCAAGTG+AGG 0.545856 4.4:-24204961 MS.gene33825:CDS
GATGGTGTTGTCTAATTCAT+CGG 0.546443 4.4:+24205228 None:intergenic
CCGTCGTCTATGGAAGGTGG+TGG 0.551471 4.4:+24205154 None:intergenic
AATGCTTTGGGGAAACAACT+AGG 0.554037 4.4:-24203309 MS.gene33825:CDS
TGAGTTTGTGGGTTGTGGGG+AGG 0.554542 4.4:+24205320 None:intergenic
ATGAGGAAAAGTCAAGTACT+TGG 0.555126 4.4:+24204766 None:intergenic
GATGGATAAGACGGCGAGGA+AGG 0.559767 4.4:-24205035 MS.gene33825:CDS
TGGAAATGATATAAATGTGA+TGG 0.562907 4.4:-24205053 MS.gene33825:CDS
CCTGCAATAACTCCGGTACC+AGG 0.564590 4.4:+24203372 None:intergenic
TGAGGAGCGTGGGATCCCTA+TGG 0.565454 4.4:-24203211 MS.gene33825:CDS
ACTTCCATAATTCTTCCATA+GGG 0.566653 4.4:+24203196 None:intergenic
TGGAGATTATGGAGCGTCAA+AGG 0.569341 4.4:-24203415 MS.gene33825:CDS
ACTCCGGTACCAGGAGAAGC+GGG 0.569424 4.4:+24203381 None:intergenic
TAACTAAGGTTGTTAAAGGA+GGG 0.570136 4.4:-24204934 MS.gene33825:CDS
AGTGAGGTCGCTGAGGAGCG+TGG 0.573201 4.4:-24203222 MS.gene33825:CDS
AGACCCGCTTCTCCTGGTAC+CGG 0.574190 4.4:-24203384 MS.gene33825:CDS
GGTACCGGAGTTATTGCAGG+TGG 0.578070 4.4:-24203369 MS.gene33825:CDS
AAAGTCAAGTACTTGGTCAT+GGG 0.581671 4.4:+24204773 None:intergenic
AACTCCGGTACCAGGAGAAG+CGG 0.582114 4.4:+24203380 None:intergenic
GTGAGGTCGCTGAGGAGCGT+GGG 0.589602 4.4:-24203221 MS.gene33825:CDS
AGAAGAGAGAGAATTGAGAG+CGG 0.592656 4.4:+24205387 None:intergenic
GGGGAGGAGAGAGAAACAAG+AGG 0.595007 4.4:+24205336 None:intergenic
CCCCAAAGCATTCTCAACAC+CGG 0.599175 4.4:+24203320 None:intergenic
AGAATTGTTCTTGAAATGGC+CGG 0.602212 4.4:-24203339 MS.gene33825:CDS
AGCCTTCCGGGATTTCCGGT+GGG 0.602553 4.4:+24205182 None:intergenic
AGACGGCGAGGAAGGATACC+GGG 0.603653 4.4:-24205027 MS.gene33825:CDS
AGGAGGAGGAGGAAGAGGAA+CGG 0.604334 4.4:+24205356 None:intergenic
ACTGGACCGTCGTCTATGGA+AGG 0.605529 4.4:+24205148 None:intergenic
TATAAATGTGATGGATAAGA+CGG 0.605582 4.4:-24205044 MS.gene33825:CDS
GAGGAGAGAGAAACAAGAGG+AGG 0.611257 4.4:+24205339 None:intergenic
AGACCTTCCCTTCAACCCAC+CGG 0.615775 4.4:-24205197 MS.gene33825:CDS
GCAGTACAGTGAGGTCGCTG+AGG 0.616630 4.4:-24203229 MS.gene33825:CDS
GTTGTTGTTGGTGATAAGCA+AGG 0.618084 4.4:-24204887 MS.gene33825:CDS
TTGTCTAATTCATCGGAGGT+GGG 0.621444 4.4:+24205235 None:intergenic
TTTGACGTTGAAGGAGAGAG+TGG 0.630827 4.4:+24205264 None:intergenic
TGACCCACCTGCAATAACTC+CGG 0.632629 4.4:+24203365 None:intergenic
AAGCAAGGACGAGTTGGTGT+TGG 0.635148 4.4:-24204872 MS.gene33825:CDS
GGTGATAAGCAAGGACGAGT+TGG 0.638537 4.4:-24204878 MS.gene33825:CDS
TGTTGGTGTTGGGAAAGCTA+AGG 0.639378 4.4:-24204855 MS.gene33825:CDS
ACCGTATAGCTCTTCGTATG+CGG 0.640746 4.4:+24205102 None:intergenic
AACCCACCGGAAATCCCGGA+AGG 0.651503 4.4:-24205184 MS.gene33825:CDS
GGACCGTCGTCTATGGAAGG+TGG 0.656325 4.4:+24205151 None:intergenic
AATCTGCTATTAATGCTAGG+AGG 0.657188 4.4:-24204811 MS.gene33825:CDS
CTATACGGTGTGGCGTACAG+TGG 0.669321 4.4:-24205088 MS.gene33825:CDS
GGTGTTGTCTAATTCATCGG+AGG 0.675048 4.4:+24205231 None:intergenic
GAAAATGAAGCAGTACAGTG+AGG 0.690707 4.4:-24203238 MS.gene33825:CDS
GTATAGCTCTTCGTATGCGG+CGG 0.690747 4.4:+24205105 None:intergenic
GTACCGGAGTTATTGCAGGT+GGG 0.698051 4.4:-24203368 MS.gene33825:CDS
ATGTGATGGATAAGACGGCG+AGG 0.709872 4.4:-24205039 MS.gene33825:CDS
CCACCACCTTCCATAGACGA+CGG 0.718416 4.4:-24205154 MS.gene33825:CDS
ATACGAAGAGCTATACGGTG+TGG 0.743299 4.4:-24205098 MS.gene33825:CDS
CCGGTGTTGAGAATGCTTTG+GGG 0.778015 4.4:-24203320 MS.gene33825:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAAATGACATTATAAT+TGG + chr4.4:24203972-24203991 None:intergenic 15.0%
!! TATATACAACATAAAATTAG+TGG + chr4.4:24205147-24205166 None:intergenic 15.0%
!!! AATTATAATGTCATTTGAAA+TGG - chr4.4:24203971-24203990 MS.gene33825:intron 15.0%
!! AACAATTTCATTGTTCTATT+GGG + chr4.4:24204219-24204238 None:intergenic 20.0%
!! AAGTTATGGATGAAAAAATT+AGG - chr4.4:24204062-24204081 MS.gene33825:intron 20.0%
!! ATGAGAAACAAATATGAAAT+AGG - chr4.4:24204665-24204684 MS.gene33825:intron 20.0%
!! ATTAGAATTAATTACCTATG+AGG + chr4.4:24203854-24203873 None:intergenic 20.0%
!! ATTTGGATATTTGTGTATAT+AGG - chr4.4:24204364-24204383 MS.gene33825:intron 20.0%
!! TTAGTCATTATTAGTATTGT+TGG - chr4.4:24204111-24204130 MS.gene33825:intron 20.0%
! AAAAATCCACCATATAAGAA+GGG + chr4.4:24204528-24204547 None:intergenic 25.0%
! AAAACAACAACTAGTAAGTA+GGG + chr4.4:24203928-24203947 None:intergenic 25.0%
! AAAACTTATTGACCAATGTT+GGG - chr4.4:24203994-24204013 MS.gene33825:intron 25.0%
! ACAATGTCATATTAATATGG+AGG + chr4.4:24204557-24204576 None:intergenic 25.0%
! CTCTAATACAAAGTGAATTA+TGG + chr4.4:24204340-24204359 None:intergenic 25.0%
! GAACAATTTCATTGTTCTAT+TGG + chr4.4:24204220-24204239 None:intergenic 25.0%
! TAGATTTCCTTAACTCAAAT+AGG - chr4.4:24204982-24205001 MS.gene33825:CDS 25.0%
! TCCATATTAATATGACATTG+TGG - chr4.4:24204556-24204575 MS.gene33825:intron 25.0%
! TGGAAATGATATAAATGTGA+TGG - chr4.4:24203547-24203566 MS.gene33825:intron 25.0%
! TTATGGAATAATACAGTTCA+AGG + chr4.4:24204323-24204342 None:intergenic 25.0%
! TTATGGATGAAAAAATTAGG+TGG - chr4.4:24204065-24204084 MS.gene33825:intron 25.0%
!! ATATGAAATAGGTTGAAATG+TGG - chr4.4:24204676-24204695 MS.gene33825:intron 25.0%
!! CATTTTTACATAGAACATAC+AGG + chr4.4:24204648-24204667 None:intergenic 25.0%
!!! AGATGGAACTTTTATTTCAA+AGG - chr4.4:24205035-24205054 MS.gene33825:CDS 25.0%
!!! GGTTTTGAATTTGAAAGTTA+TGG - chr4.4:24204048-24204067 MS.gene33825:intron 25.0%
!!! TATAAATGTGATGGATAAGA+CGG - chr4.4:24203556-24203575 MS.gene33825:intron 25.0%
AACTCAATAGAAACAAGCAA+AGG + chr4.4:24204247-24204266 None:intergenic 30.0%
AAGAAGGAAAAGATAAGAGA+TGG - chr4.4:24203611-24203630 MS.gene33825:intron 30.0%
AATAGAAACAAGCAAAGGTA+AGG + chr4.4:24204242-24204261 None:intergenic 30.0%
ACAATGTTAAGAACACAAGA+AGG + chr4.4:24204279-24204298 None:intergenic 30.0%
ACTTCCATAATTCTTCCATA+GGG + chr4.4:24205407-24205426 None:intergenic 30.0%
AGAAATCTGCTATTAATGCT+AGG - chr4.4:24203786-24203805 MS.gene33825:intron 30.0%
AGAAGGAAAAGATAAGAGAT+GGG - chr4.4:24203612-24203631 MS.gene33825:intron 30.0%
AGTGAGAATTGTTCTTGAAA+TGG - chr4.4:24205257-24205276 MS.gene33825:CDS 30.0%
ATGAATGCCTAAGTAACTTA+TGG - chr4.4:24204927-24204946 MS.gene33825:CDS 30.0%
CAAAAATCCACCATATAAGA+AGG + chr4.4:24204529-24204548 None:intergenic 30.0%
CAAAACAACAACTAGTAAGT+AGG + chr4.4:24203929-24203948 None:intergenic 30.0%
CTTTGTATTAGAGCTTCATT+TGG - chr4.4:24204347-24204366 MS.gene33825:intron 30.0%
GAAAACTTATTGACCAATGT+TGG - chr4.4:24203993-24204012 MS.gene33825:intron 30.0%
GCCACAATGTCATATTAATA+TGG + chr4.4:24204560-24204579 None:intergenic 30.0%
TAACTAAGGTTGTTAAAGGA+GGG - chr4.4:24203666-24203685 MS.gene33825:intron 30.0%
TAAGTGACCATAAGTTACTT+AGG + chr4.4:24204937-24204956 None:intergenic 30.0%
TACTTCCATAATTCTTCCAT+AGG + chr4.4:24205408-24205427 None:intergenic 30.0%
TGAGTTAAGGAAATCTAACA+GGG + chr4.4:24204979-24204998 None:intergenic 30.0%
TTCATTGTTCTATTGGGAAT+AGG + chr4.4:24204213-24204232 None:intergenic 30.0%
TTGAGTTAAGGAAATCTAAC+AGG + chr4.4:24204980-24204999 None:intergenic 30.0%
! GAATATAAAGCATCTGATTG+AGG - chr4.4:24204795-24204814 MS.gene33825:CDS 30.0%
! TTAGCATCGTAAGATTTTAC+TGG - chr4.4:24204714-24204733 MS.gene33825:intron 30.0%
! TTCAGTTCCTATTTGAGTTA+AGG + chr4.4:24204992-24205011 None:intergenic 30.0%
!! TTAGTATTGTTGGTGACATA+TGG - chr4.4:24204121-24204140 MS.gene33825:intron 30.0%
!!! TTATATGGTGGATTTTTGTC+TGG - chr4.4:24204531-24204550 MS.gene33825:intron 30.0%
AAAAGTCAAGTACTTGGTCA+TGG + chr4.4:24203831-24203850 None:intergenic 35.0%
AAAGGGAAAGGTTATTGTGA+AGG - chr4.4:24204160-24204179 MS.gene33825:intron 35.0%
AAAGTCAAGTACTTGGTCAT+GGG + chr4.4:24203830-24203849 None:intergenic 35.0%
AAGGGAAAGGTTATTGTGAA+GGG - chr4.4:24204161-24204180 MS.gene33825:intron 35.0%
AATCTGCTATTAATGCTAGG+AGG - chr4.4:24203789-24203808 MS.gene33825:intron 35.0%
AGAATTGTTCTTGAAATGGC+CGG - chr4.4:24205261-24205280 MS.gene33825:CDS 35.0%
AGATGCTTTATATTCAGCTC+TGG + chr4.4:24204790-24204809 None:intergenic 35.0%
AGGGAAACAAATGAGGTTTA+GGG - chr4.4:24203685-24203704 MS.gene33825:intron 35.0%
AGGGTAACTAAGGTTGTTAA+AGG - chr4.4:24203662-24203681 MS.gene33825:intron 35.0%
ATAGTCGAAAGTAAAGGGAA+AGG - chr4.4:24204148-24204167 MS.gene33825:intron 35.0%
ATGAGGAAAAGTCAAGTACT+TGG + chr4.4:24203837-24203856 None:intergenic 35.0%
CAATTTGACAATGTGAGACA+CGG + chr4.4:24204392-24204411 None:intergenic 35.0%
CTAACAGGGAACATCTTAAT+AGG + chr4.4:24204965-24204984 None:intergenic 35.0%
CTTACGATGCTAATAGCATA+TGG + chr4.4:24204707-24204726 None:intergenic 35.0%
GCATGATAGTCGAAAGTAAA+GGG - chr4.4:24204143-24204162 MS.gene33825:intron 35.0%
GTAACTAAGGTTGTTAAAGG+AGG - chr4.4:24203665-24203684 MS.gene33825:intron 35.0%
TCCATCAAATGCTCAAATGA+AGG + chr4.4:24204740-24204759 None:intergenic 35.0%
TGCGATAAGCATTCACATAT+GGG + chr4.4:24204888-24204907 None:intergenic 35.0%
TTAAAGGAGGGAAACAAATG+AGG - chr4.4:24203678-24203697 MS.gene33825:intron 35.0%
! AGTACTTGACTTTTCCTCAT+AGG - chr4.4:24203837-24203856 MS.gene33825:intron 35.0%
! TAATGTTTTTCCAGAGCTGA+TGG - chr4.4:24205165-24205184 MS.gene33825:CDS 35.0%
! TTTAGGGCTATTGTTGTTGT+TGG - chr4.4:24203701-24203720 MS.gene33825:intron 35.0%
!! GATGGTGTTGTCTAATTCAT+CGG + chr4.4:24203375-24203394 None:intergenic 35.0%
AAGAAAGGGTTGTTCAAGTG+AGG - chr4.4:24203639-24203658 MS.gene33825:intron 40.0%
AATGCTTATCGCAGCTGAAA+GGG - chr4.4:24204895-24204914 MS.gene33825:CDS 40.0%
AGAAGAGAGAGAATTGAGAG+CGG + chr4.4:24203216-24203235 None:intergenic 40.0%
AGGGAAAGGTTATTGTGAAG+GGG - chr4.4:24204162-24204181 MS.gene33825:intron 40.0%
ATTTCATCTTCGTCTTCGAC+TGG + chr4.4:24203473-24203492 None:intergenic 40.0%
CAACAACTAGTAAGTAGGGT+CGG + chr4.4:24203924-24203943 None:intergenic 40.0%
CAACGCAGATTCCACTATAT+AGG + chr4.4:24204582-24204601 None:intergenic 40.0%
CATCTGATTGAGGTTGTAGT+TGG - chr4.4:24204805-24204824 MS.gene33825:CDS 40.0%
CTGCGATAAGCATTCACATA+TGG + chr4.4:24204889-24204908 None:intergenic 40.0%
CTTATTGACCAATGTTGGGT+TGG - chr4.4:24203998-24204017 MS.gene33825:intron 40.0%
GAAAATGAAGCAGTACAGTG+AGG - chr4.4:24205362-24205381 MS.gene33825:CDS 40.0%
GAGGGAAACAAATGAGGTTT+AGG - chr4.4:24203684-24203703 MS.gene33825:intron 40.0%
GCCTTCATTTGAGCATTTGA+TGG - chr4.4:24204736-24204755 MS.gene33825:intron 40.0%
GGAAAAGATAAGAGATGGGT+TGG - chr4.4:24203616-24203635 MS.gene33825:intron 40.0%
GGATCCCTATGGAAGAATTA+TGG - chr4.4:24205400-24205419 MS.gene33825:CDS 40.0%
GGCATGATAGTCGAAAGTAA+AGG - chr4.4:24204142-24204161 MS.gene33825:intron 40.0%
GTCATGACATAATGCAATGC+TGG + chr4.4:24204415-24204434 None:intergenic 40.0%
TATTGTGAAGGGGAAATCCT+TGG - chr4.4:24204172-24204191 MS.gene33825:intron 40.0%
TCGGCTACACAGATCAAATT+AGG + chr4.4:24203905-24203924 None:intergenic 40.0%
TGACATTGTGGCCTATATAG+TGG - chr4.4:24204568-24204587 MS.gene33825:intron 40.0%
TTCTAGCATCTTAGAACACG+AGG + chr4.4:24205090-24205109 None:intergenic 40.0%
TTGTCTAATTCATCGGAGGT+GGG + chr4.4:24203368-24203387 None:intergenic 40.0%
! AATGTGAGTTTGTGGGTTGT+GGG + chr4.4:24203287-24203306 None:intergenic 40.0%
! AGGTCACACACAAAGTATCA+AGG + chr4.4:24204303-24204322 None:intergenic 40.0%
! ATATAGTGGAATCTGCGTTG+TGG - chr4.4:24204582-24204601 MS.gene33825:intron 40.0%
!! AAGAGATGGGTTGGAAGAAA+GGG - chr4.4:24203625-24203644 MS.gene33825:intron 40.0%
!! AATGCTTTGGGGAAACAACT+AGG - chr4.4:24205291-24205310 MS.gene33825:CDS 40.0%
!! ACCATATAAGAAGGGCATTG+CGG + chr4.4:24204520-24204539 None:intergenic 40.0%
!! GTTGTTGTTGGTGATAAGCA+AGG - chr4.4:24203713-24203732 MS.gene33825:intron 40.0%
!! TAAGAGATGGGTTGGAAGAA+AGG - chr4.4:24203624-24203643 MS.gene33825:intron 40.0%
AAAGGGTTGTTCAAGTGAGG+AGG - chr4.4:24203642-24203661 MS.gene33825:intron 45.0%
AACACGTATGCAGCGATCTA+TGG + chr4.4:24204860-24204879 None:intergenic 45.0%
AAGGGTTGTTCAAGTGAGGA+GGG - chr4.4:24203643-24203662 MS.gene33825:intron 45.0%
ACCGTATAGCTCTTCGTATG+CGG + chr4.4:24203501-24203520 None:intergenic 45.0%
AGAGAATTGAGAGCGGAAGA+AGG + chr4.4:24203209-24203228 None:intergenic 45.0%
AGAGAGTGGAGAGAGAGAAT+GGG + chr4.4:24203325-24203344 None:intergenic 45.0%
AGTCTCTTCTTGCTGAGAGA+TGG - chr4.4:24205018-24205037 MS.gene33825:CDS 45.0%
ATACGAAGAGCTATACGGTG+TGG - chr4.4:24203502-24203521 MS.gene33825:intron 45.0%
GAATGCTTATCGCAGCTGAA+AGG - chr4.4:24204894-24204913 MS.gene33825:CDS 45.0%
GAGAGGGAATGTGAGTTTGT+GGG + chr4.4:24203294-24203313 None:intergenic 45.0%
GCAATGCCCTTCTTATATGG+TGG - chr4.4:24204519-24204538 MS.gene33825:intron 45.0%
GGAGAAAGAATTCTCCACCA+AGG + chr4.4:24204192-24204211 None:intergenic 45.0%
GGGAATTGCTTTGACGTTGA+AGG + chr4.4:24203348-24203367 None:intergenic 45.0%
GTATGCAGCGATCTATGGAA+GGG + chr4.4:24204855-24204874 None:intergenic 45.0%
GTCATGACAGATTCTGTGCT+AGG - chr4.4:24204427-24204446 MS.gene33825:intron 45.0%
GTTGTCTAATTCATCGGAGG+TGG + chr4.4:24203369-24203388 None:intergenic 45.0%
TAGATCGCTGCATACGTGTT+TGG - chr4.4:24204860-24204879 MS.gene33825:CDS 45.0%
TCAAGTGAGGAGGGTAACTA+AGG - chr4.4:24203652-24203671 MS.gene33825:intron 45.0%
TCCAGAGCTGATGGAGATTA+TGG - chr4.4:24205174-24205193 MS.gene33825:CDS 45.0%
TCCATAATCTCCATCAGCTC+TGG + chr4.4:24205178-24205197 None:intergenic 45.0%
TGAAGGGAAGGTCTTCTTCT+GGG + chr4.4:24203397-24203416 None:intergenic 45.0%
TGAGAGGGAATGTGAGTTTG+TGG + chr4.4:24203295-24203314 None:intergenic 45.0%
TGTTTCCAACTTTCCGCTGT+AGG - chr4.4:24204494-24204513 MS.gene33825:intron 45.0%
TTGAAGGGAAGGTCTTCTTC+TGG + chr4.4:24203398-24203417 None:intergenic 45.0%
TTTGACGTTGAAGGAGAGAG+TGG + chr4.4:24203339-24203358 None:intergenic 45.0%
! ATGTGAGTTTGTGGGTTGTG+GGG + chr4.4:24203286-24203305 None:intergenic 45.0%
! GAATGTGAGTTTGTGGGTTG+TGG + chr4.4:24203288-24203307 None:intergenic 45.0%
! GGTGTTGTCTAATTCATCGG+AGG + chr4.4:24203372-24203391 None:intergenic 45.0%
! TACAGTGGTGTTAGTGTGCT+TGG - chr4.4:24203527-24203546 MS.gene33825:intron 45.0%
! TGGAGATTATGGAGCGTCAA+AGG - chr4.4:24205185-24205204 MS.gene33825:CDS 45.0%
!! AGAATGGGGTTTTGGTGAGA+GGG + chr4.4:24203310-24203329 None:intergenic 45.0%
!! TGTTGGTGTTGGGAAAGCTA+AGG - chr4.4:24203745-24203764 MS.gene33825:intron 45.0%
AGAGAAACAAGAGGAGGAGG+AGG + chr4.4:24203258-24203277 None:intergenic 50.0%
ATGAAGCCTTCCGGGATTTC+CGG + chr4.4:24203425-24203444 None:intergenic 50.0%
CGTATGCAGCGATCTATGGA+AGG + chr4.4:24204856-24204875 None:intergenic 50.0%
GAGAGAGAAACAAGAGGAGG+AGG + chr4.4:24203261-24203280 None:intergenic 50.0%
GAGAGAGTGGAGAGAGAGAA+TGG + chr4.4:24203326-24203345 None:intergenic 50.0%
GAGAGTGGAGAGAGAGAATG+GGG + chr4.4:24203324-24203343 None:intergenic 50.0%
GAGGAGAGAGAAACAAGAGG+AGG + chr4.4:24203264-24203283 None:intergenic 50.0%
GCCGCAATGCCCTTCTTATA+TGG - chr4.4:24204516-24204535 MS.gene33825:intron 50.0%
GCCGCATACGAAGAGCTATA+CGG - chr4.4:24203497-24203516 MS.gene33825:intron 50.0%
GGTGATAAGCAAGGACGAGT+TGG - chr4.4:24203722-24203741 MS.gene33825:intron 50.0%
GTACCGGAGTTATTGCAGGT+GGG - chr4.4:24205232-24205251 MS.gene33825:CDS 50.0%
GTATAGCTCTTCGTATGCGG+CGG + chr4.4:24203498-24203517 None:intergenic 50.0%
TGACCCACCTGCAATAACTC+CGG + chr4.4:24205238-24205257 None:intergenic 50.0%
TGGAACGGGACTCTGATGTA+AGG - chr4.4:24204027-24204046 MS.gene33825:intron 50.0%
TGTGAAGGGGAAATCCTTGG+TGG - chr4.4:24204175-24204194 MS.gene33825:intron 50.0%
! ATTCAGCTCTGGTATCCCTC+AGG + chr4.4:24204779-24204798 None:intergenic 50.0%
! CCCCAAAGCATTCTCAACAC+CGG + chr4.4:24205283-24205302 None:intergenic 50.0%
! CCGGTGTTGAGAATGCTTTG+GGG - chr4.4:24205280-24205299 MS.gene33825:CDS 50.0%
! GCCGGTGTTGAGAATGCTTT+GGG - chr4.4:24205279-24205298 MS.gene33825:CDS 50.0%
! GGAGAGAGAGAATGGGGTTT+TGG + chr4.4:24203318-24203337 None:intergenic 50.0%
! TTCAGCTCTGGTATCCCTCA+GGG + chr4.4:24204778-24204797 None:intergenic 50.0%
!! AAGCAAGGACGAGTTGGTGT+TGG - chr4.4:24203728-24203747 MS.gene33825:intron 50.0%
!! ATGTGATGGATAAGACGGCG+AGG - chr4.4:24203561-24203580 MS.gene33825:intron 50.0%
!! GACGAGTTGGTGTTGGTGTT+GGG - chr4.4:24203735-24203754 MS.gene33825:intron 50.0%
!! GAGAATGGGGTTTTGGTGAG+AGG + chr4.4:24203311-24203330 None:intergenic 50.0%
AACTCCGGTACCAGGAGAAG+CGG + chr4.4:24205223-24205242 None:intergenic 55.0%
AAGACGGCGAGGAAGGATAC+CGG - chr4.4:24203572-24203591 MS.gene33825:intron 55.0%
AAGATAGTCGCTGCTGCCTG+TGG + chr4.4:24204455-24204474 None:intergenic 55.0%
ACAAGAGGAGGAGGAGGAAG+AGG + chr4.4:24203252-24203271 None:intergenic 55.0%
ACTGGACCGTCGTCTATGGA+AGG + chr4.4:24203455-24203474 None:intergenic 55.0%
AGACCTTCCCTTCAACCCAC+CGG - chr4.4:24203403-24203422 MS.gene33825:CDS 55.0%
AGGAGGAGGAGGAAGAGGAA+CGG + chr4.4:24203247-24203266 None:intergenic 55.0%
ATGCTTAGACCCGCTTCTCC+TGG - chr4.4:24205210-24205229 MS.gene33825:CDS 55.0%
CACTCGGACCAACCCAACAT+TGG + chr4.4:24204009-24204028 None:intergenic 55.0%
CACTGCAGCTACAGTTGCTC+TGG + chr4.4:24205340-24205359 None:intergenic 55.0%
CATCAGAGTCCCGTTCCACT+CGG + chr4.4:24204025-24204044 None:intergenic 55.0%
CCACCACCTTCCATAGACGA+CGG - chr4.4:24203446-24203465 MS.gene33825:intron 55.0%
CCTGCAATAACTCCGGTACC+AGG + chr4.4:24205231-24205250 None:intergenic 55.0%
CTATACGGTGTGGCGTACAG+TGG - chr4.4:24203512-24203531 MS.gene33825:intron 55.0%
CTGGTATCCCTCAGGGAGAA+GGG + chr4.4:24204771-24204790 None:intergenic 55.0%
CTTCAACCCACCGGAAATCC+CGG - chr4.4:24203412-24203431 MS.gene33825:CDS 55.0%
GATGGATAAGACGGCGAGGA+AGG - chr4.4:24203565-24203584 MS.gene33825:intron 55.0%
GGGGAGGAGAGAGAAACAAG+AGG + chr4.4:24203267-24203286 None:intergenic 55.0%
TCTGGTATCCCTCAGGGAGA+AGG + chr4.4:24204772-24204791 None:intergenic 55.0%
TGAAGTCCCCTTCTCCCTGA+GGG - chr4.4:24204761-24204780 MS.gene33825:intron 55.0%
TGGTATCCCTCAGGGAGAAG+GGG + chr4.4:24204770-24204789 None:intergenic 55.0%
TTCGACTGGACCGTCGTCTA+TGG + chr4.4:24203459-24203478 None:intergenic 55.0%
TTGAAGTCCCCTTCTCCCTG+AGG - chr4.4:24204760-24204779 MS.gene33825:intron 55.0%
! AAGGATACCGGGTTCGGTTC+GGG - chr4.4:24203584-24203603 MS.gene33825:intron 55.0%
! CCTGGTACCGGAGTTATTGC+AGG - chr4.4:24205228-24205247 MS.gene33825:CDS 55.0%
! GAAGGATACCGGGTTCGGTT+CGG - chr4.4:24203583-24203602 MS.gene33825:intron 55.0%
! GATTCTGTGCTAGGTGCCAC+AGG - chr4.4:24204436-24204455 MS.gene33825:intron 55.0%
! GGCCGGTGTTGAGAATGCTT+TGG - chr4.4:24205278-24205297 MS.gene33825:CDS 55.0%
! GGGAAGGTCTTCTTCTGGGA+TGG + chr4.4:24203393-24203412 None:intergenic 55.0%
! GGTACCGGAGTTATTGCAGG+TGG - chr4.4:24205231-24205250 MS.gene33825:CDS 55.0%
! GTGGTGGAATGAAGCCTTCC+GGG + chr4.4:24203433-24203452 None:intergenic 55.0%
! TGAGTTTGTGGGTTGTGGGG+AGG + chr4.4:24203283-24203302 None:intergenic 55.0%
!! CAATGTTGGGTTGGTCCGAG+TGG - chr4.4:24204007-24204026 MS.gene33825:intron 55.0%
!! GGACGAGTTGGTGTTGGTGT+TGG - chr4.4:24203734-24203753 MS.gene33825:intron 55.0%
!! GGGATTTCCGGTGGGTTGAA+GGG + chr4.4:24203413-24203432 None:intergenic 55.0%
!! GGTGGTGGAATGAAGCCTTC+CGG + chr4.4:24203434-24203453 None:intergenic 55.0%
!! TTGGGTTGGTCCGAGTGGAA+CGG - chr4.4:24204012-24204031 MS.gene33825:intron 55.0%
!! TTTCCGGTGGGTTGAAGGGA+AGG + chr4.4:24203409-24203428 None:intergenic 55.0%
AACCCACCGGAAATCCCGGA+AGG - chr4.4:24203416-24203435 MS.gene33825:CDS 60.0%
AAGCCTTCCGGGATTTCCGG+TGG + chr4.4:24203422-24203441 None:intergenic 60.0%
ACTCCGGTACCAGGAGAAGC+GGG + chr4.4:24205222-24205241 None:intergenic 60.0%
AGACCCGCTTCTCCTGGTAC+CGG - chr4.4:24205216-24205235 MS.gene33825:CDS 60.0%
AGACGGCGAGGAAGGATACC+GGG - chr4.4:24203573-24203592 MS.gene33825:intron 60.0%
AGCCTTCCGGGATTTCCGGT+GGG + chr4.4:24203421-24203440 None:intergenic 60.0%
CCGTCGTCTATGGAAGGTGG+TGG + chr4.4:24203449-24203468 None:intergenic 60.0%
GCAGTACAGTGAGGTCGCTG+AGG - chr4.4:24205371-24205390 MS.gene33825:CDS 60.0%
GCGAGGAAGGATACCGGGTT+CGG - chr4.4:24203578-24203597 MS.gene33825:intron 60.0%
GGACCGTCGTCTATGGAAGG+TGG + chr4.4:24203452-24203471 None:intergenic 60.0%
TGCGGCCTACAGCGGAAAGT+TGG + chr4.4:24204502-24204521 None:intergenic 60.0%
! TGAGGAGCGTGGGATCCCTA+TGG - chr4.4:24205389-24205408 MS.gene33825:CDS 60.0%
!! AAGGGCATTGCGGCCTACAG+CGG + chr4.4:24204510-24204529 None:intergenic 60.0%
!! CGGGATTTCCGGTGGGTTGA+AGG + chr4.4:24203414-24203433 None:intergenic 60.0%
!! GTTCGGTTCGGGTGCGAAGA+AGG - chr4.4:24203595-24203614 MS.gene33825:intron 60.0%
!! TGGGTTGGTCCGAGTGGAAC+GGG - chr4.4:24204013-24204032 MS.gene33825:intron 60.0%
AGTGAGGTCGCTGAGGAGCG+TGG - chr4.4:24205378-24205397 MS.gene33825:CDS 65.0%
CTTCGCACCCGAACCGAACC+CGG + chr4.4:24203594-24203613 None:intergenic 65.0%
! GTGAGGTCGCTGAGGAGCGT+GGG - chr4.4:24205379-24205398 MS.gene33825:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 24203194 24205428 24203194 ID=MS.gene33825
chr4.4 mRNA 24203194 24205428 24203194 ID=MS.gene33825.t1;Parent=MS.gene33825
chr4.4 exon 24204764 24205428 24204764 ID=MS.gene33825.t1.exon1;Parent=MS.gene33825.t1
chr4.4 CDS 24204764 24205428 24204764 ID=cds.MS.gene33825.t1;Parent=MS.gene33825.t1
chr4.4 exon 24203194 24203443 24203194 ID=MS.gene33825.t1.exon2;Parent=MS.gene33825.t1
chr4.4 CDS 24203194 24203443 24203194 ID=cds.MS.gene33825.t1;Parent=MS.gene33825.t1
Gene Sequence

>MS.gene33825

ATGGCTGCTTCACCTTCTTCCGCTCTCAATTCTCTCTCTTCTCTCTCTTTCCGTTCCTCTTCCTCCTCCTCCTCTTGTTTCTCTCTCCTCCCCACAACCCACAAACTCACATTCCCTCTCACCAAAACCCCATTCTCTCTCTCCACTCTCTCCTTCAACGTCAAAGCAATTCCCACCTCCGATGAATTAGACAACACCATCCCAGAAGAAGACCTTCCCTTCAACCCACCGGAAATCCCGGAAGGCTTCATTCCACCACCTTCCATAGACGACGGTCCAGTCGAAGACGAAGATGAAATCGCCGCCGCATACGAAGAGCTATACGGTGTGGCGTACAGTGGTGTTAGTGTGCTTGGAAATGATATAAATGTGATGGATAAGACGGCGAGGAAGGATACCGGGTTCGGTTCGGGTGCGAAGAAGGAAAAGATAAGAGATGGGTTGGAAGAAAGGGTTGTTCAAGTGAGGAGGGTAACTAAGGTTGTTAAAGGAGGGAAACAAATGAGGTTTAGGGCTATTGTTGTTGTTGGTGATAAGCAAGGACGAGTTGGTGTTGGTGTTGGGAAAGCTAAGGAAGTTGTTTCTGCTGTTCAGAAATCTGCTATTAATGCTAGGAGGAATCTTATTAGAGTTCCCATGACCAAGTACTTGACTTTTCCTCATAGGTAATTAATTCTAATTTTCATACATTCATCAATTTTCAAACAACCTAATTTGATCTGTGTAGCCGACCCTACTTACTAGTTGTTGTTTTGTGTAAATGATATTAGTTTAGCCAATTATAATGTCATTTGAAATGGAAAACTTATTGACCAATGTTGGGTTGGTCCGAGTGGAACGGGACTCTGATGTAAGGTTTTGAATTTGAAAGTTATGGATGAAAAAATTAGGTGGTTCGTTTCATTCTTTTGTAGAGATTAGTCATTATTAGTATTGTTGGTGACATATGGCATGATAGTCGAAAGTAAAGGGAAAGGTTATTGTGAAGGGGAAATCCTTGGTGGAGAATTCTTTCTCCTATTCCCAATAGAACAATGAAATTGTTCCTTACCTTTGCTTGTTTCTATTGAGTTTTCGTTTTTCCTTCTTGTGTTCTTAACATTGTTCCTTGATACTTTGTGTGTGACCTTGAACTGTATTATTCCATAATTCACTTTGTATTAGAGCTTCATTTGGATATTTGTGTATATAGGTTCCGTGTCTCACATTGTCAAATTGCCAGCATTGCATTATGTCATGACAGATTCTGTGCTAGGTGCCACAGGCAGCAGCGACTATCTTAATCTTATCATTATCACTATGTTTCCAACTTTCCGCTGTAGGCCGCAATGCCCTTCTTATATGGTGGATTTTTGTCTGGCCTCCATATTAATATGACATTGTGGCCTATATAGTGGAATCTGCGTTGTGGATGATTCACTATGCTGAAATTGTATGTTGACATGTGATTACCTGTATGTTCTATGTAAAAATGAGAAACAAATATGAAATAGGTTGAAATGTGGACATTCCATATGCTATTAGCATCGTAAGATTTTACTGGCCTTCATTTGAGCATTTGATGGATTGAAGTCCCCTTCTCCCTGAGGGATACCAGAGCTGAATATAAAGCATCTGATTGAGGTTGTAGTTGGAGCATGCATTTTCAACTAGCAGTGCCCTTCCATAGATCGCTGCATACGTGTTTGGTGCCCATATGTGAATGCTTATCGCAGCTGAAAGGGCTCTTGCTGATGAATGCCTAAGTAACTTATGGTCACTTAAGCAACCTATTAAGATGTTCCCTGTTAGATTTCCTTAACTCAAATAGGAACTGAAGAGCAGAGTCTCTTCTTGCTGAGAGATGGAACTTTTATTTCAAAGGAGAAGCATATCAATAACTTCGATTGAGTTCCTCGTGTTCTAAGATGCTAGAATTTTAGTTAGATATGAATTTTGAGTTGCAAATTGCCACTAATTTTATGTTGTATATAATGTTTTTCCAGAGCTGATGGAGATTATGGAGCGTCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACCGGAGTTATTGCAGGTGGGTCAGTGAGAATTGTTCTTGAAATGGCCGGTGTTGAGAATGCTTTGGGGAAACAACTAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTAGCTGCAGTGCAGAAAATGAAGCAGTACAGTGAGGTCGCTGAGGAGCGTGGGATCCCTATGGAAGAATTATGGAAGTAG

Protein sequence

>MS.gene33825.t1

MAASPSSALNSLSSLSFRSSSSSSSCFSLLPTTHKLTFPLTKTPFSLSTLSFNVKAIPTSDELDNTIPEEDLPFNPPEIPEGFIPPPSIDDGPVEDEDEIAAAYEELYGVAYSGVSVLGNDINVMDKTARKDTGFGSGAKKEKIRDGLEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGVGKAKEVVSAVQKSAINARRNLIRVPMTKYLTFPHRADGDYGASKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVAAVQKMKQYSEVAEERGIPMEELWK