AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0147240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147240 MtrunA17_Chr1g0156581 89.286 616 62 2 1 614 7 620 0.0 1118
Msa0147240 MtrunA17_Chr3g0142621 42.265 627 290 16 24 594 21 631 8.40e-115 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 187 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTCTTTGGGACCAATTT+TGG 0.079863 1_4:+7138092 None:intergenic
CTCAACGAAATTAGTGTATT+TGG 0.082600 1_4:-7132292 Msa0147240:three_prime_UTR
CACTTTGCCAATTAGGATTC+TGG 0.106907 1_4:+7135404 Msa0147250:three_prime_UTR
ATTCTATATGTGAAGAAATT+AGG 0.140891 1_4:-7135218 Msa0147240:exon
TTGCTTGCTATCAAAATTTC+TGG 0.161491 1_4:+7136843 None:intergenic
AGAACATCAAAAGAGATTTA+AGG 0.197250 1_4:-7139326 Msa0147240:CDS
CATATTGAGTTCCATATAAT+TGG 0.201785 1_4:+7135524 None:intergenic
TTTGATTTGAATTGCGATTA+TGG 0.202006 1_4:-7132043 Msa0147240:three_prime_UTR
CTTTGAGAGGGCAAAGTTAT+TGG 0.215781 1_4:-7137234 Msa0147240:CDS
CATCAAGTTCCTTGATAATA+TGG 0.221055 1_4:+7137984 None:intergenic
TTTCTTCCACTTTGCCAATT+AGG 0.222523 1_4:+7135397 Msa0147250:three_prime_UTR
CCATTTGTTTGTTGAAATCT+TGG 0.225064 1_4:+7133292 Msa0147250:CDS
GAACACACAGATAATGAAAA+AGG 0.229430 1_4:-7135013 Msa0147240:three_prime_UTR
TTCAAGAGGAACATAGTATT+TGG 0.241775 1_4:-7132211 Msa0147240:three_prime_UTR
ATTCTATTCCATTGAACTTA+TGG 0.246157 1_4:+7138268 None:intergenic
TGGTCCCAAAGAGGAGTTTC+TGG 0.248234 1_4:-7138085 Msa0147240:CDS
CCTACATCACAAGAAATATT+TGG 0.257970 1_4:-7135322 Msa0147240:CDS
TATTATGGTAGCCAATTATA+TGG 0.264395 1_4:-7135535 Msa0147240:CDS
CAATGTCTGCGAACTTGATT+TGG 0.278261 1_4:+7133328 Msa0147250:CDS
TTGCAACAACCTCGTTATTA+TGG 0.286639 1_4:-7135550 Msa0147240:CDS
TTCGCGACCGCGCTTCTTCA+TGG 0.287658 1_4:+7138320 None:intergenic
TCTTTGGTTTCTTTGAGAAT+TGG 0.294523 1_4:+7139416 None:intergenic
TCTTTGAATGAAACTATTAA+TGG 0.309949 1_4:-7137266 Msa0147240:CDS
CTTGATCATCTGACTGTTGT+AGG 0.310869 1_4:-7136030 Msa0147240:CDS
CAATTATATGGAACTCAATA+TGG 0.313814 1_4:-7135523 Msa0147240:CDS
TCCTTGTCAACTGGAAGTTA+TGG 0.329835 1_4:-7136204 Msa0147240:CDS
AACTGGAAGTTATGGATTAA+AGG 0.337379 1_4:-7136196 Msa0147240:CDS
AACAGGAAATTGGCCAAAAT+TGG 0.342250 1_4:-7138105 Msa0147240:CDS
CGACTTTGATGCGTAGGAAT+TGG 0.342514 1_4:+7136072 None:intergenic
TGTGCTATTGACTGAAAATA+AGG 0.344592 1_4:+7136111 None:intergenic
AACTTGAACAGAATGATAAA+TGG 0.345807 1_4:-7136447 Msa0147240:CDS
ACTTTGCCAATTAGGATTCT+GGG 0.349503 1_4:+7135405 Msa0147250:three_prime_UTR
ATGCCATTCTTACTTTCATT+AGG 0.351418 1_4:+7136396 None:intergenic
TTCTATATGTGAAGAAATTA+GGG 0.352386 1_4:-7135217 Msa0147240:exon
TCAACGAAATTAGTGTATTT+GGG 0.354296 1_4:-7132291 Msa0147240:three_prime_UTR
GCTTCAACATCTGGAGTATA+TGG 0.354662 1_4:-7136333 Msa0147240:CDS
CGTGGACCCAGAATCCTAAT+TGG 0.355576 1_4:-7135411 Msa0147240:CDS
GAATGAATTCATCAAGTATA+AGG 0.361705 1_4:-7134489 Msa0147240:intron
GTTGTAGACATTCAGAAAGT+TGG 0.365354 1_4:+7134977 Msa0147250:three_prime_UTR
TTCATGACACCCACGAAGAT+TGG 0.367246 1_4:+7136518 None:intergenic
CCATTCTTAGAAAGTAGAAT+TGG 0.376515 1_4:-7139656 Msa0147240:five_prime_UTR
TTGTAGACATTCAGAAAGTT+GGG 0.378542 1_4:+7134978 Msa0147250:three_prime_UTR
ATCGAAGTATCGAGTTCTTT+CGG 0.379175 1_4:-7136478 Msa0147240:CDS
AATGTTAATGCTTCTCTTGA+AGG 0.380928 1_4:-7137914 Msa0147240:intron
CACACAAATAAACTCTTGTT+TGG 0.382472 1_4:-7139592 Msa0147240:CDS
CCAAATATTTCTTGTGATGT+AGG 0.384332 1_4:+7135322 Msa0147250:three_prime_UTR
GGGTATGAGGAAAGATGATT+TGG 0.386388 1_4:+7135344 Msa0147250:three_prime_UTR
TAGAACCAGAAACTCCTCTT+TGG 0.387132 1_4:+7138080 None:intergenic
AATCTCTTGTCCTTGTCAAC+TGG 0.388105 1_4:-7136213 Msa0147240:CDS
ACTTGATGGAGAACCTTTCA+TGG 0.391137 1_4:-7137969 Msa0147240:CDS
TCTTGCCCATTTGTCTTGGA+TGG 0.392860 1_4:+7135252 Msa0147250:three_prime_UTR
TCTTGTGATGTAGGGGTATG+AGG 0.395732 1_4:+7135331 Msa0147250:three_prime_UTR
TCCAACGATTGAAGTAATCT+TGG 0.396123 1_4:+7135297 Msa0147250:three_prime_UTR
CCAATTCTACTTTCTAAGAA+TGG 0.397710 1_4:+7139656 None:intergenic
TGATGATTTACTATTGCAAT+TGG 0.398465 1_4:+7134849 Msa0147250:three_prime_UTR
AACATAGTATTTGGCTAAAC+GGG 0.399817 1_4:-7132202 Msa0147240:three_prime_UTR
AGAGAGAGAGAACAGTTAAA+GGG 0.412502 1_4:+7139837 None:intergenic
TCACAGGCTGCTTCAACATC+TGG 0.416938 1_4:-7136342 Msa0147240:CDS
CTTGCCCATTTGTCTTGGAT+GGG 0.417595 1_4:+7135253 Msa0147250:three_prime_UTR
CAGGCTATCATTGAAAGAAT+GGG 0.419258 1_4:+7134767 Msa0147250:intron
GAACATAGTATTTGGCTAAA+CGG 0.419670 1_4:-7132203 Msa0147240:three_prime_UTR
CATATTATCAAGGAACTTGA+TGG 0.420827 1_4:-7137983 Msa0147240:CDS
ATTATAATAAAGTTCGAAGT+AGG 0.427697 1_4:-7136161 Msa0147240:CDS
GGTATGAGGAAAGATGATTT+GGG 0.428294 1_4:+7135345 Msa0147250:three_prime_UTR
GCAGGCTATCATTGAAAGAA+TGG 0.433845 1_4:+7134766 Msa0147250:intron
CAAATATTTCTTGTGATGTA+GGG 0.435409 1_4:+7135323 Msa0147250:three_prime_UTR
TCTGAGTTATGTCTAGCAAT+GGG 0.437335 1_4:-7137119 Msa0147240:CDS
ATCTTATTACACCAGTACTT+TGG 0.438490 1_4:+7135187 Msa0147250:three_prime_UTR
TCACCTGAACGTAGCTTCCT+TGG 0.441911 1_4:+7139149 None:intergenic
ACCGCGTCTAATTCAACATC+TGG 0.447105 1_4:+7136956 None:intergenic
ATTATACAGTTCTATATCTC+TGG 0.448782 1_4:-7135078 Msa0147240:three_prime_UTR
CCAAGATTTCAACAAACAAA+TGG 0.450421 1_4:-7133292 Msa0147240:three_prime_UTR
GAAGGCCTTGCATTGTGGCC+AGG 0.455023 1_4:-7136663 Msa0147240:CDS
TATATTCTAGCCTCGGTTCA+AGG 0.456972 1_4:-7137341 Msa0147240:intron
TTGCCCATTTGTCTTGGATG+GGG 0.457853 1_4:+7135254 Msa0147250:three_prime_UTR
AAGAAGAACCATAAGTTCAA+TGG 0.458103 1_4:-7138276 Msa0147240:CDS
CTTCGTGGGTGTCATGAAAC+GGG 0.458795 1_4:-7136513 Msa0147240:CDS
GTAATATACCGGAGATATGC+TGG 0.461155 1_4:+7133209 Msa0147250:CDS
CATTCTGTTGCAGAACAGAC+AGG 0.470525 1_4:+7132173 Msa0147250:CDS
AAGATCTTGCCCATTTGTCT+TGG 0.472158 1_4:+7135248 Msa0147250:three_prime_UTR
TAATCGCAATTCAAATCAAA+TGG 0.474191 1_4:+7132046 Msa0147250:exon
CAGTTAAAGGGAACATGGAA+TGG 0.475209 1_4:+7139849 None:intergenic
TCTTCGTGGGTGTCATGAAA+CGG 0.475577 1_4:-7136514 Msa0147240:CDS
TTTACATCAGTCATGCGATT+CGG 0.476699 1_4:-7136578 Msa0147240:CDS
TGGAATAGAATCTCTAGAAA+AGG 0.477113 1_4:-7138256 Msa0147240:CDS
ATGGTCTGAAGATTTGTAGA+TGG 0.482719 1_4:+7137191 None:intergenic
ACAAATAAACTCTTGTTTGG+TGG 0.484331 1_4:-7139589 Msa0147240:intron
TATTCGTGATTAACCGTCTC+AGG 0.493289 1_4:+7137167 None:intergenic
TGTATCACTCATTGTGAGAC+GGG 0.493371 1_4:-7135110 Msa0147240:three_prime_UTR
AAGAAGATTTGAACAATGGA+TGG 0.493880 1_4:-7131981 Msa0147240:three_prime_UTR
AGAACCAGAAACTCCTCTTT+GGG 0.495390 1_4:+7138081 None:intergenic
AGAAATGACTATTCTGCAAT+GGG 0.495928 1_4:-7135379 Msa0147240:CDS
TAATAAAGTTCGAAGTAGGT+TGG 0.496971 1_4:-7136157 Msa0147240:CDS
TCCAAGATTACTTCAATCGT+TGG 0.497011 1_4:-7135298 Msa0147240:CDS
ATGTATTATGTACACTTCCA+TGG 0.500745 1_4:+7134931 Msa0147250:three_prime_UTR
TATTCCAGATTAAATATGAC+TGG 0.510410 1_4:-7137010 Msa0147240:intron
AGGGACAGATTCCAAAGTAC+TGG 0.510784 1_4:-7135198 Msa0147240:three_prime_UTR
AAAGAAGAAGATTTGAACAA+TGG 0.512861 1_4:-7131985 Msa0147240:three_prime_UTR
AATCCTAATGAAAGTAAGAA+TGG 0.512870 1_4:-7136399 Msa0147240:CDS
TGAGAGGGCAAAGTTATTGG+TGG 0.515588 1_4:-7137231 Msa0147240:CDS
CTTGATGAATTCATTCTAGC+GGG 0.516282 1_4:+7134496 Msa0147250:CDS
GTTCCAAGGAAGCTACGTTC+AGG 0.516402 1_4:-7139152 Msa0147240:intron
AGTTAAAGGGAACATGGAAT+GGG 0.525556 1_4:+7139850 None:intergenic
TTTGAAAGTGAACAAAAGTA+AGG 0.526281 1_4:+7131928 None:intergenic
TGGTCTGAAGATTTGTAGAT+GGG 0.528568 1_4:+7137192 None:intergenic
AGCTGAGACTCTGTATGCAT+TGG 0.533537 1_4:-7138035 Msa0147240:CDS
TGTCGTGAAAGTTGTTTACC+TGG 0.535065 1_4:-7137308 Msa0147240:CDS
AAGTTCCTTGATAATATGGT+TGG 0.535952 1_4:+7137988 None:intergenic
AAGAAATGACTATTCTGCAA+TGG 0.540060 1_4:-7135380 Msa0147240:CDS
GTCAATAGCACAGCAGCAAA+GGG 0.540185 1_4:-7136100 Msa0147240:CDS
CTCTGAGTTATGTCTAGCAA+TGG 0.542092 1_4:-7137120 Msa0147240:CDS
GGGAACATGGAATGGGAATG+AGG 0.542529 1_4:+7139857 None:intergenic
CATCAGAAGGCCTTGCATTG+TGG 0.543118 1_4:-7136668 Msa0147240:intron
AAAACAGTCCAGCATATCTC+CGG 0.546650 1_4:-7133217 Msa0147240:three_prime_UTR
TGCCCATTTGTCTTGGATGG+GGG 0.548139 1_4:+7135255 Msa0147250:three_prime_UTR
TATGACACTGAACACAAGCC+TGG 0.552462 1_4:+7136645 None:intergenic
CATTTCAGCAGAGTCACGAC+AGG 0.554284 1_4:+7134819 Msa0147250:three_prime_UTR
TATCACAAAAGATGAGGAAG+AGG 0.554801 1_4:-7138059 Msa0147240:CDS
AGTCAATAGCACAGCAGCAA+AGG 0.559727 1_4:-7136101 Msa0147240:CDS
GTATGAGGAAAGATGATTTG+GGG 0.565026 1_4:+7135346 Msa0147250:three_prime_UTR
TGTACATAATACATGGCTCA+AGG 0.566144 1_4:-7134922 Msa0147240:three_prime_UTR
AAATGAAAGACACATGGAAG+AGG 0.567750 1_4:+7139763 None:intergenic
ACAAGCCTGGCCACAATGCA+AGG 0.568663 1_4:+7136658 None:intergenic
GTTGTGAAGTGAAGTTGAAG+AGG 0.571063 1_4:+7139798 None:intergenic
TGCAACAAGCAGCTCAAGCT+AGG 0.574393 1_4:-7135456 Msa0147240:CDS
ATCAAAGAATCCAATCTTCG+TGG 0.575463 1_4:-7136528 Msa0147240:CDS
GAGAACAGTTAAAGGGAACA+TGG 0.576640 1_4:+7139844 None:intergenic
TGTTTCTCGAAATCTTCAAG+AGG 0.577575 1_4:-7132225 Msa0147240:three_prime_UTR
CATAATACATGGCTCAAGGG+TGG 0.577888 1_4:-7134918 Msa0147240:three_prime_UTR
GTGATTAACCGTCTCAGGCA+TGG 0.580444 1_4:+7137172 None:intergenic
CTACAACAGTCAGATGATCA+AGG 0.580745 1_4:+7136031 None:intergenic
GCGTAACGACTTTGATGCGT+AGG 0.580775 1_4:+7136066 None:intergenic
CAGAATCCTAATTGGCAAAG+TGG 0.584017 1_4:-7135403 Msa0147240:CDS
TGGCTCCAACCATATTATCA+AGG 0.585343 1_4:-7137993 Msa0147240:CDS
TGGTCAAGAACTCTTTGAGA+GGG 0.586250 1_4:-7137246 Msa0147240:CDS
GCTATGGTGCTTCTGTTCCA+AGG 0.586786 1_4:-7139166 Msa0147240:CDS
AAGACTTTCGCCTTGAACCG+AGG 0.587506 1_4:+7137331 None:intergenic
CCACTATGGTGAAATATCAC+AGG 0.588135 1_4:-7136358 Msa0147240:CDS
TCTGACTGTTGTAGGACCAC+AGG 0.589844 1_4:-7136022 Msa0147240:intron
AAATATTTCTTGTGATGTAG+GGG 0.592599 1_4:+7135324 Msa0147250:three_prime_UTR
CTGAAAATTGCAATATTACG+TGG 0.595494 1_4:-7135429 Msa0147240:CDS
CACAAATTTCACAATGCGAG+AGG 0.599720 1_4:-7136982 Msa0147240:CDS
ACACGAGATTTAAGAAACCA+TGG 0.601898 1_4:-7134948 Msa0147240:three_prime_UTR
ACTTGATGAATTCATTCTAG+CGG 0.603094 1_4:+7134495 Msa0147250:CDS
TCAAAGAATCCAATCTTCGT+GGG 0.606393 1_4:-7136527 Msa0147240:CDS
TATGAGGAAAGATGATTTGG+GGG 0.607071 1_4:+7135347 Msa0147250:three_prime_UTR
TGTAGACATTCAGAAAGTTG+GGG 0.610223 1_4:+7134979 Msa0147250:three_prime_UTR
ATAATACATGGCTCAAGGGT+GGG 0.610710 1_4:-7134917 Msa0147240:three_prime_UTR
TGACAAAATAACAAACCTTG+TGG 0.613650 1_4:-7133361 Msa0147240:intron
TCCATAACTTCCAGTTGACA+AGG 0.614158 1_4:+7136203 None:intergenic
TGGTTCTATCACAAAAGATG+AGG 0.614760 1_4:-7138065 Msa0147240:CDS
GTACATAATACATGGCTCAA+GGG 0.615332 1_4:-7134921 Msa0147240:three_prime_UTR
CAAATACACTAATTTCGTTG+AGG 0.615858 1_4:+7132293 Msa0147250:CDS
GTACACACAAGGTAATATAC+CGG 0.616996 1_4:+7133198 Msa0147250:CDS
GTGTATCACTCATTGTGAGA+CGG 0.617358 1_4:-7135111 Msa0147240:three_prime_UTR
GGAGTACGACGACGTTATTG+TGG 0.617611 1_4:-7131960 Msa0147240:three_prime_UTR
ATGGTCAAGAACTCTTTGAG+AGG 0.620090 1_4:-7137247 Msa0147240:CDS
TCTTCAGACCATGCCTGAGA+CGG 0.624612 1_4:-7137180 Msa0147240:CDS
GAAACACAAGGTCGAATACG+AGG 0.625603 1_4:+7132242 Msa0147250:CDS
ATGGAAGTGTACATAATACA+TGG 0.629812 1_4:-7134929 Msa0147240:three_prime_UTR
CTAACTACAAAGAAGCACAA+TGG 0.630559 1_4:-7135048 Msa0147240:three_prime_UTR
ACTGCAAGAAACAAGCAAGA+AGG 0.630829 1_4:+7134522 Msa0147250:CDS
TGGGATCTCTATTTACGACA+AGG 0.631018 1_4:-7132272 Msa0147240:three_prime_UTR
GTTGCAGTTTCGTACACACA+AGG 0.632236 1_4:+7133187 Msa0147250:intron
AGGCTATCATTGAAAGAATG+GGG 0.635618 1_4:+7134768 Msa0147250:intron
ATTCTGTTGCAGAACAGACA+GGG 0.638809 1_4:+7132174 Msa0147250:CDS
TGAAGATTTCGAGAAACACA+AGG 0.640719 1_4:+7132230 Msa0147250:CDS
GGCCAAAATTGGTCCCAAAG+AGG 0.643574 1_4:-7138094 Msa0147240:CDS
CCTGTGATATTTCACCATAG+TGG 0.644154 1_4:+7136358 None:intergenic
ATGATCAAGGTAAACTGTCG+AGG 0.644271 1_4:+7136044 None:intergenic
TGACATCACTGATAATGAGT+TGG 0.649266 1_4:+7133253 Msa0147250:CDS
AAGACTCAAAACATGAAGCG+TGG 0.654533 1_4:-7139631 Msa0147240:exon
CTTCATGTCCTGCAAAACTG+AGG 0.654726 1_4:+7137940 None:intergenic
GGCTATCATTGAAAGAATGG+GGG 0.667109 1_4:+7134769 Msa0147250:intron
GTATCACTCATTGTGAGACG+GGG 0.677728 1_4:-7135109 Msa0147240:three_prime_UTR
AGTGATAAATGAAAGACACA+TGG 0.679597 1_4:+7139757 None:intergenic
CTGAGTTATGTCTAGCAATG+GGG 0.684708 1_4:-7137118 Msa0147240:intron
GGTACATGCAAATTTGACGA+CGG 0.685039 1_4:+7136132 None:intergenic
TAGTTACTTGTGATACTGTG+AGG 0.687877 1_4:-7136422 Msa0147240:CDS
ATTTCAGCAGAGTCACGACA+GGG 0.688002 1_4:+7134820 Msa0147250:three_prime_UTR
GCAACAATGTTTCCTCACAG+TGG 0.705825 1_4:-7138013 Msa0147240:CDS
ATATGGTTGGAGCCACTGTG+AGG 0.708280 1_4:+7138001 None:intergenic
ATTACAGCCATGAAGAAGCG+CGG 0.721076 1_4:-7138327 Msa0147240:intron
TATCACTCATTGTGAGACGG+GGG 0.725206 1_4:-7135108 Msa0147240:three_prime_UTR
ACCAGATGTTGAATTAGACG+CGG 0.733787 1_4:-7136957 Msa0147240:intron
AATTGGCTACCATAATAACG+AGG 0.777976 1_4:+7135541 None:intergenic
ATGAGGAAAGATGATTTGGG+GGG 0.787407 1_4:+7135348 Msa0147250:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTTCTAAATTTTTA+TGG - chr1_4:7132522-7132541 Msa0147240:intron 10.0%
!!! TTATAAAATTTTAAACTGTA+TGG - chr1_4:7133178-7133197 Msa0147240:intron 10.0%
!!! TATAAAATTTTAAACTGTAT+GGG - chr1_4:7133179-7133198 Msa0147240:intron 10.0%
!!! TTATAAAATTTTAAACTGTA+TGG - chr1_4:7133178-7133197 Msa0147240:intron 10.0%
!!! TATAAAATTTTAAACTGTAT+GGG - chr1_4:7133179-7133198 Msa0147240:intron 10.0%
!! AAATATATATGCATTATTTA+TGG - chr1_4:7139444-7139463 Msa0147240:intron 10.0%
!!! CTTAATATGAATTTTTCAAA+TGG + chr1_4:7132975-7132994 Msa0147250:intron 15.0%
!!! TGTTTTTGTTAGTATATTAT+AGG - chr1_4:7133023-7133042 Msa0147240:intron 15.0%
!!! TAATGTTATTTTCAATTTAC+AGG - chr1_4:7133089-7133108 Msa0147240:intron 15.0%
!!! AATGTTATTTTCAATTTACA+GGG - chr1_4:7133090-7133109 Msa0147240:intron 15.0%
!! TCTTATATAATATAGAAGAA+GGG + chr1_4:7133896-7133915 Msa0147250:intron 15.0%
!!! TAATCTTTTTTTTTTTTGTC+AGG + chr1_4:7134036-7134055 Msa0147250:intron 15.0%
!!! ATATTACATTTTATATACAG+GGG + chr1_4:7134213-7134232 Msa0147250:intron 15.0%
!!! GATATTACATTTTATATACA+GGG + chr1_4:7134214-7134233 Msa0147250:intron 15.0%
!! ACGATTTAATAAATAAAGAA+AGG + chr1_4:7134385-7134404 Msa0147250:intron 15.0%
!! AAACATGTTATTAATTACAA+AGG + chr1_4:7134737-7134756 Msa0147250:intron 15.0%
!! TCTAATACATATATTAAGAA+CGG + chr1_4:7135849-7135868 None:intergenic 15.0%
!!! AATAATAGTGGAATATAAAA+GGG + chr1_4:7138183-7138202 None:intergenic 15.0%
!!! AAATAATAGTGGAATATAAA+AGG + chr1_4:7138184-7138203 None:intergenic 15.0%
!! TTTATGATACAAAATAATAG+TGG + chr1_4:7138195-7138214 None:intergenic 15.0%
!!! TTTTGTTCTTAGTTTTTGAA+TGG - chr1_4:7132584-7132603 Msa0147240:intron 20.0%
!! TGTTTGCCATTAAAAAAAAA+TGG + chr1_4:7132919-7132938 Msa0147250:intron 20.0%
!!! TTTTTTAATGGCAAACATTT+TGG - chr1_4:7132922-7132941 Msa0147240:intron 20.0%
!! AAAATTCATATTAAGCAGTT+AGG - chr1_4:7132980-7132999 Msa0147240:intron 20.0%
!! CAAATTAACATAAACAAACA+AGG + chr1_4:7133129-7133148 Msa0147250:intron 20.0%
!! CTCTTATATAATATAGAAGA+AGG + chr1_4:7133897-7133916 Msa0147250:intron 20.0%
!!! TTTAAAAAGTTTTATGCTGA+TGG + chr1_4:7134070-7134089 Msa0147250:intron 20.0%
!!! GGATATTACATTTTATATAC+AGG + chr1_4:7134215-7134234 Msa0147250:intron 20.0%
!! CAAATATTTGTAATGATTCA+AGG - chr1_4:7134267-7134286 Msa0147240:intron 20.0%
!! TCTTTGAATGAAACTATTAA+TGG - chr1_4:7134509-7134528 Msa0147240:three_prime_UTR 20.0%
!! AAAGTATATAGATTTCAGAA+TGG + chr1_4:7134711-7134730 Msa0147250:intron 20.0%
!! ATGAATGAACAAGTAAAAAA+TGG - chr1_4:7134967-7134986 Msa0147240:three_prime_UTR 20.0%
!! AAAATAAGAATTTACCACTT+GGG + chr1_4:7135018-7135037 Msa0147250:three_prime_UTR 20.0%
!!! TATTTTGATCATAAAAACAC+AGG - chr1_4:7135032-7135051 Msa0147240:three_prime_UTR 20.0%
!!! TCTTTGATAACTTTTTGTTT+TGG + chr1_4:7135235-7135254 Msa0147250:three_prime_UTR 20.0%
!! ATTATAATAAAGTTCGAAGT+AGG - chr1_4:7135614-7135633 Msa0147240:intron 20.0%
!! AAACTAGATTTGATAAAAGA+TGG + chr1_4:7135959-7135978 None:intergenic 20.0%
!!! TAAGATACTTTTGTAGTAAT+AGG + chr1_4:7136162-7136181 None:intergenic 20.0%
!! ATTCTATATGTGAAGAAATT+AGG - chr1_4:7136557-7136576 Msa0147240:CDS 20.0%
!! TTCTATATGTGAAGAAATTA+GGG - chr1_4:7136558-7136577 Msa0147240:CDS 20.0%
!!! TTTAGTTTTATCTGATTTGA+AGG + chr1_4:7137316-7137335 None:intergenic 20.0%
!!! AAGGACATTTTTCATATATA+TGG - chr1_4:7137758-7137777 Msa0147240:intron 20.0%
!!! TTTTTTAGAACTAAAACATG+TGG - chr1_4:7137957-7137976 Msa0147240:CDS 20.0%
!! ATTTATAGAAAACTATGTCT+CGG + chr1_4:7138237-7138256 None:intergenic 20.0%
!! TTAAATAACAACCGTTTAAT+GGG + chr1_4:7138622-7138641 None:intergenic 20.0%
!! TAATGAGTTCAATACAAATA+TGG + chr1_4:7139390-7139409 None:intergenic 20.0%
!!! ATTAATTAATTTCCCCTTTT+TGG + chr1_4:7139663-7139682 None:intergenic 20.0%
! AGAACATCAAAAGAGATTTA+AGG - chr1_4:7132449-7132468 Msa0147240:intron 25.0%
!! CTTTCGTTATATTTTTCCAT+AGG - chr1_4:7132711-7132730 Msa0147240:intron 25.0%
! ATTAAAAAAAAATGGCCCTT+TGG + chr1_4:7132911-7132930 Msa0147250:intron 25.0%
!!! AAAGGGCCATTTTTTTTTAA+TGG - chr1_4:7132910-7132929 Msa0147240:intron 25.0%
! ATTGAAAATAACATTATCCG+CGG + chr1_4:7133085-7133104 Msa0147250:intron 25.0%
!! CTTTTCTTTATCATGTAAGA+TGG + chr1_4:7133482-7133501 Msa0147250:intron 25.0%
! ATTCTATTCCATTGAACTTA+TGG + chr1_4:7133510-7133529 Msa0147250:intron 25.0%
! GTATTGTAATAAGACATTTG+TGG - chr1_4:7133566-7133585 Msa0147240:intron 25.0%
! TACTTAAAAGACAAAGCAAA+AGG + chr1_4:7133606-7133625 Msa0147250:intron 25.0%
!!! TTTTTTTTCCACCTTTAACT+TGG - chr1_4:7133629-7133648 Msa0147240:intron 25.0%
! AATGCAAAATTCCAAGTTAA+AGG + chr1_4:7133643-7133662 Msa0147250:intron 25.0%
!! ATTTTGCATTTTGTAGAAAC+AGG - chr1_4:7133653-7133672 Msa0147240:intron 25.0%
!! ATTTTGTAGAAACAGGAAAT+TGG - chr1_4:7133660-7133679 Msa0147240:intron 25.0%
! ACATTGCATAATATATGCAT+GGG - chr1_4:7133961-7133980 Msa0147240:intron 25.0%
!! ACATTTTAAATGTAGGAAGT+GGG + chr1_4:7133991-7134010 Msa0147250:intron 25.0%
!! AATATCCCTTATGACTTTTA+AGG - chr1_4:7134228-7134247 Msa0147240:intron 25.0%
! ATCTACCTTAAAAGTCATAA+GGG + chr1_4:7134236-7134255 Msa0147250:intron 25.0%
! AATATATGGCAAAAGAAAGT+GGG + chr1_4:7134420-7134439 Msa0147250:intron 25.0%
! TATTCCAGATTAAATATGAC+TGG - chr1_4:7134765-7134784 Msa0147240:intron 25.0%
! CAAAATAAGAATTTACCACT+TGG + chr1_4:7135019-7135038 Msa0147250:three_prime_UTR 25.0%
! AACTTGAACAGAATGATAAA+TGG - chr1_4:7135328-7135347 Msa0147240:CDS 25.0%
! AATCCTAATGAAAGTAAGAA+TGG - chr1_4:7135376-7135395 Msa0147240:CDS 25.0%
! AACAAATTAATCAATACCTG+TGG + chr1_4:7135772-7135791 None:intergenic 25.0%
! AAACTGAACAAACAAATTCT+AGG - chr1_4:7135805-7135824 Msa0147240:intron 25.0%
! ATCAAGGGATATATTTATGA+GGG + chr1_4:7136139-7136158 None:intergenic 25.0%
!! TTTTGTAGTAATAGGATCAA+GGG + chr1_4:7136154-7136173 None:intergenic 25.0%
! TATTATGGTAGCCAATTATA+TGG - chr1_4:7136240-7136259 Msa0147240:intron 25.0%
! CATATTGAGTTCCATATAAT+TGG + chr1_4:7136254-7136273 None:intergenic 25.0%
! CAATTATATGGAACTCAATA+TGG - chr1_4:7136252-7136271 Msa0147240:intron 25.0%
! AAATATTTCTTGTGATGTAG+GGG + chr1_4:7136454-7136473 None:intergenic 25.0%
! CAAATATTTCTTGTGATGTA+GGG + chr1_4:7136455-7136474 None:intergenic 25.0%
! ATTATACAGTTCTATATCTC+TGG - chr1_4:7136697-7136716 Msa0147240:intron 25.0%
! AACACACAGATAATGAAAAA+GGG - chr1_4:7136763-7136782 Msa0147240:intron 25.0%
! TGATGATTTACTATTGCAAT+TGG + chr1_4:7136929-7136948 None:intergenic 25.0%
! GAATGAATTCATCAAGTATA+AGG - chr1_4:7137286-7137305 Msa0147240:CDS 25.0%
! GTATGTTAAATTAGACACAA+TGG - chr1_4:7137472-7137491 Msa0147240:intron 25.0%
!!! TCACTTCTTTCATTTGTTTT+TGG + chr1_4:7137554-7137573 None:intergenic 25.0%
! AAAAATTTGTACACACAACA+AGG - chr1_4:7137703-7137722 Msa0147240:intron 25.0%
! GCAATTGCAAATTATTTACT+AGG - chr1_4:7137793-7137812 Msa0147240:intron 25.0%
! GTTATCTATCTTTGTATTGT+TGG + chr1_4:7138309-7138328 None:intergenic 25.0%
! TGCTTAGATATTCAAAACAT+TGG + chr1_4:7138344-7138363 None:intergenic 25.0%
!!! TGTTTTTCAGTAATCATGTA+GGG + chr1_4:7138383-7138402 None:intergenic 25.0%
!!! TTGTTTTTCAGTAATCATGT+AGG + chr1_4:7138384-7138403 None:intergenic 25.0%
! CATGATTACTGAAAAACAAA+AGG - chr1_4:7138385-7138404 Msa0147240:intron 25.0%
! AACAAATGTTACCCATTAAA+CGG - chr1_4:7138608-7138627 Msa0147240:intron 25.0%
! GTTAAATAACAACCGTTTAA+TGG + chr1_4:7138623-7138642 None:intergenic 25.0%
!! AAAGCTGTAGTTCTATATAT+TGG + chr1_4:7138665-7138684 None:intergenic 25.0%
!! AGATTTTCAACCAATTAACT+AGG - chr1_4:7138911-7138930 Msa0147240:intron 25.0%
! TCAACGAAATTAGTGTATTT+GGG - chr1_4:7139484-7139503 Msa0147240:intron 25.0%
! TAATCGCAATTCAAATCAAA+TGG + chr1_4:7139732-7139751 None:intergenic 25.0%
!!! TTTGATTTGAATTGCGATTA+TGG - chr1_4:7139732-7139751 Msa0147240:five_prime_UTR 25.0%
! AAAGAAGAAGATTTGAACAA+TGG - chr1_4:7139790-7139809 Msa0147240:five_prime_UTR 25.0%
! TTTGAAAGTGAACAAAAGTA+AGG + chr1_4:7139850-7139869 None:intergenic 25.0%
AGTGATAAATGAAAGACACA+TGG + chr1_4:7132021-7132040 Msa0147250:five_prime_UTR 30.0%
! CCAATTCTACTTTCTAAGAA+TGG + chr1_4:7132122-7132141 Msa0147250:intron 30.0%
CCATTCTTAGAAAGTAGAAT+TGG - chr1_4:7132119-7132138 Msa0147240:intron 30.0%
CACACAAATAAACTCTTGTT+TGG - chr1_4:7132183-7132202 Msa0147240:three_prime_UTR 30.0%
! ACAAATAAACTCTTGTTTGG+TGG - chr1_4:7132186-7132205 Msa0147240:three_prime_UTR 30.0%
ACCAAACAAAACTCATTTGT+CGG - chr1_4:7132244-7132263 Msa0147240:three_prime_UTR 30.0%
! TCTTTGGTTTCTTTGAGAAT+TGG + chr1_4:7132362-7132381 Msa0147250:intron 30.0%
!! CTAACTTTTTCTTGCTTCTT+TGG + chr1_4:7132378-7132397 Msa0147250:intron 30.0%
! TAGTTTTTGAATGGATGCTA+TGG - chr1_4:7132593-7132612 Msa0147240:intron 30.0%
TAAAACTCATAGAGTTCCTA+TGG + chr1_4:7132730-7132749 Msa0147250:intron 30.0%
!!! TACTTACAAAAGTGCTTTTG+TGG - chr1_4:7133309-7133328 Msa0147240:three_prime_UTR 30.0%
TTCATGGCTGTAATTTCAAA+AGG + chr1_4:7133442-7133461 Msa0147250:intron 30.0%
AAGAAGAACCATAAGTTCAA+TGG - chr1_4:7133499-7133518 Msa0147240:intron 30.0%
! TGGAATAGAATCTCTAGAAA+AGG - chr1_4:7133519-7133538 Msa0147240:intron 30.0%
! AAGTTCCTTGATAATATGGT+TGG + chr1_4:7133790-7133809 Msa0147250:intron 30.0%
! CATCAAGTTCCTTGATAATA+TGG + chr1_4:7133794-7133813 Msa0147250:intron 30.0%
CATATTATCAAGGAACTTGA+TGG - chr1_4:7133792-7133811 Msa0147240:intron 30.0%
AATGTTAATGCTTCTCTTGA+AGG - chr1_4:7133861-7133880 Msa0147240:intron 30.0%
GACATTGCATAATATATGCA+TGG - chr1_4:7133960-7133979 Msa0147240:intron 30.0%
! CACATTTTAAATGTAGGAAG+TGG + chr1_4:7133992-7134011 Msa0147250:intron 30.0%
! AGCTCACACATTTTAAATGT+AGG + chr1_4:7133998-7134017 Msa0147250:intron 30.0%
GCTACTTGACAAAAAAAGAA+AGG + chr1_4:7134126-7134145 Msa0147250:intron 30.0%
ACAATTTAATTGTGGAGAAG+TGG - chr1_4:7134164-7134183 Msa0147240:intron 30.0%
GATCTACCTTAAAAGTCATA+AGG + chr1_4:7134237-7134256 Msa0147250:intron 30.0%
GAATATATGGCAAAAGAAAG+TGG + chr1_4:7134421-7134440 Msa0147250:intron 30.0%
TTGTCCAGTCATATTTAATC+TGG + chr1_4:7134772-7134791 Msa0147250:CDS 30.0%
!! GCTATTAGTACTGATGTTAT+TGG - chr1_4:7134887-7134906 Msa0147240:three_prime_UTR 30.0%
!! TTGCTTGCTATCAAAATTTC+TGG + chr1_4:7134935-7134954 Msa0147250:three_prime_UTR 30.0%
ATGCCATTCTTACTTTCATT+AGG + chr1_4:7135382-7135401 Msa0147250:three_prime_UTR 30.0%
! AGTAAGATCGAGGTTTATTT+TGG - chr1_4:7135477-7135496 Msa0147240:CDS 30.0%
CATAATAAGGATGGTTATCA+GGG + chr1_4:7135533-7135552 None:intergenic 30.0%
GATTGAAACTCTGCATAATA+AGG + chr1_4:7135546-7135565 None:intergenic 30.0%
! AACTGGAAGTTATGGATTAA+AGG - chr1_4:7135579-7135598 Msa0147240:intron 30.0%
TAATAAAGTTCGAAGTAGGT+TGG - chr1_4:7135618-7135637 Msa0147240:intron 30.0%
! TGTGCTATTGACTGAAAATA+AGG + chr1_4:7135667-7135686 None:intergenic 30.0%
ACTCTAACAACGAAATAACA+TGG - chr1_4:7136097-7136116 Msa0147240:CDS 30.0%
GATCAAGGGATATATTTATG+AGG + chr1_4:7136140-7136159 None:intergenic 30.0%
! CTTTTGTAGTAATAGGATCA+AGG + chr1_4:7136155-7136174 None:intergenic 30.0%
TGCAGATAATTTAAGCATCA+TGG + chr1_4:7136198-7136217 None:intergenic 30.0%
CTGAAAATTGCAATATTACG+TGG - chr1_4:7136346-7136365 Msa0147240:CDS 30.0%
AAGAAATGACTATTCTGCAA+TGG - chr1_4:7136395-7136414 Msa0147240:CDS 30.0%
AGAAATGACTATTCTGCAAT+GGG - chr1_4:7136396-7136415 Msa0147240:CDS 30.0%
CCAAATATTTCTTGTGATGT+AGG + chr1_4:7136456-7136475 None:intergenic 30.0%
CCTACATCACAAGAAATATT+TGG - chr1_4:7136453-7136472 Msa0147240:CDS 30.0%
ATCTTATTACACCAGTACTT+TGG + chr1_4:7136591-7136610 None:intergenic 30.0%
!!! CTTGCTCATTTCACTTTTTA+AGG + chr1_4:7136645-7136664 None:intergenic 30.0%
GAACACACAGATAATGAAAA+AGG - chr1_4:7136762-7136781 Msa0147240:intron 30.0%
TTGTAGACATTCAGAAAGTT+GGG + chr1_4:7136800-7136819 None:intergenic 30.0%
ATGTATTATGTACACTTCCA+TGG + chr1_4:7136847-7136866 None:intergenic 30.0%
! ATGGAAGTGTACATAATACA+TGG - chr1_4:7136846-7136865 Msa0147240:CDS 30.0%
! AACACAAAACAGGTTAGTTA+AGG - chr1_4:7137033-7137052 Msa0147240:intron 30.0%
CATAGGTACCTTATGATTTA+AGG + chr1_4:7137171-7137190 None:intergenic 30.0%
ACTTGATGAATTCATTCTAG+CGG + chr1_4:7137283-7137302 None:intergenic 30.0%
CAGATAAAACTAAATGAGCA+AGG - chr1_4:7137322-7137341 Msa0147240:CDS 30.0%
GTGTCTAATTTAACATACAG+CGG + chr1_4:7137470-7137489 None:intergenic 30.0%
TATATGAAAAATGTCCTTGC+AGG + chr1_4:7137756-7137775 None:intergenic 30.0%
TTCATATATATGGCAGCAAA+TGG - chr1_4:7137768-7137787 Msa0147240:intron 30.0%
GAAGTTGGATCTAGTATTTA+CGG - chr1_4:7137826-7137845 Msa0147240:intron 30.0%
TTTCGATCAAAGTGGAAAAT+GGG - chr1_4:7137921-7137940 Msa0147240:CDS 30.0%
GCAAAAGTTGAAATACATGA+TGG + chr1_4:7138079-7138098 None:intergenic 30.0%
!!! GAAGAATCTGAGTGTTTTTT+TGG + chr1_4:7138131-7138150 None:intergenic 30.0%
ATATAAAAGGGTAGATGGAT+GGG + chr1_4:7138171-7138190 None:intergenic 30.0%
AATATAAAAGGGTAGATGGA+TGG + chr1_4:7138172-7138191 None:intergenic 30.0%
GGTAATGCTATGATGATATT+GGG + chr1_4:7138288-7138307 None:intergenic 30.0%
! TGGTAATGCTATGATGATAT+TGG + chr1_4:7138289-7138308 None:intergenic 30.0%
!! GTTTTTCAGTAATCATGTAG+GGG + chr1_4:7138382-7138401 None:intergenic 30.0%
TGACAAAATAACAAACCTTG+TGG - chr1_4:7138414-7138433 Msa0147240:intron 30.0%
!!! TTTGGTTTTTAACTTCCACA+AGG + chr1_4:7138432-7138451 None:intergenic 30.0%
! CCATTTGTTTGTTGAAATCT+TGG + chr1_4:7138486-7138505 None:intergenic 30.0%
CCAAGATTTCAACAAACAAA+TGG - chr1_4:7138483-7138502 Msa0147240:intron 30.0%
TGTGAACAGTAATTTATCTG+TGG + chr1_4:7138745-7138764 None:intergenic 30.0%
AAATTACTGTTCACAGATGA+TGG - chr1_4:7138750-7138769 Msa0147240:intron 30.0%
AATTACTGTTCACAGATGAT+GGG - chr1_4:7138751-7138770 Msa0147240:intron 30.0%
TTGAAGGATTCCAAGTTAAT+TGG + chr1_4:7139123-7139142 None:intergenic 30.0%
TACAAAGTTAGGGACTAATT+TGG + chr1_4:7139213-7139232 None:intergenic 30.0%
AAATTAGTCCCTAACTTTGT+AGG - chr1_4:7139212-7139231 Msa0147240:intron 30.0%
AATTAGTCCCTAACTTTGTA+GGG - chr1_4:7139213-7139232 Msa0147240:intron 30.0%
GACAATTTATCCCACTAAAT+GGG - chr1_4:7139320-7139339 Msa0147240:CDS 30.0%
ACAATTTATCCCACTAAATG+GGG - chr1_4:7139321-7139340 Msa0147240:CDS 30.0%
CAAATACACTAATTTCGTTG+AGG + chr1_4:7139485-7139504 None:intergenic 30.0%
CTCAACGAAATTAGTGTATT+TGG - chr1_4:7139483-7139502 Msa0147240:intron 30.0%
TTCAAGAGGAACATAGTATT+TGG - chr1_4:7139564-7139583 Msa0147240:intron 30.0%
GAACATAGTATTTGGCTAAA+CGG - chr1_4:7139572-7139591 Msa0147240:intron 30.0%
AACATAGTATTTGGCTAAAC+GGG - chr1_4:7139573-7139592 Msa0147240:intron 30.0%
! TTAATTTCCCCTTTTTGGAT+TGG + chr1_4:7139658-7139677 None:intergenic 30.0%
AAGAAGATTTGAACAATGGA+TGG - chr1_4:7139794-7139813 Msa0147240:five_prime_UTR 30.0%
AGTTAAAGGGAACATGGAAT+GGG + chr1_4:7131928-7131947 None:intergenic 35.0%
AGAGAGAGAGAACAGTTAAA+GGG + chr1_4:7131941-7131960 Msa0147250:five_prime_UTR 35.0%
AAATGAAAGACACATGGAAG+AGG + chr1_4:7132015-7132034 Msa0147250:five_prime_UTR 35.0%
!!! ACCGACAAATGAGTTTTGTT+TGG + chr1_4:7132248-7132267 Msa0147250:CDS 35.0%
AGCTTCAAAGATTGCTTCAA+GGG + chr1_4:7132766-7132785 Msa0147250:intron 35.0%
AAGCTTCAAAGATTGCTTCA+AGG + chr1_4:7132767-7132786 Msa0147250:intron 35.0%
!! AGCAGCTTTTGATTAACCAA+AGG - chr1_4:7132892-7132911 Msa0147240:intron 35.0%
!! GCAGCTTTTGATTAACCAAA+GGG - chr1_4:7132893-7132912 Msa0147240:intron 35.0%
! TCACCAATAATTTTTGTCCG+CGG - chr1_4:7133065-7133084 Msa0147240:intron 35.0%
TATCCGCGGACAAAAATTAT+TGG + chr1_4:7133071-7133090 Msa0147250:intron 35.0%
GCAAAATTCCAAGTTAAAGG+TGG + chr1_4:7133640-7133659 Msa0147250:intron 35.0%
AACAGGAAATTGGCCAAAAT+TGG - chr1_4:7133670-7133689 Msa0147240:intron 35.0%
! TGGTTCTATCACAAAAGATG+AGG - chr1_4:7133710-7133729 Msa0147240:intron 35.0%
TATCACAAAAGATGAGGAAG+AGG - chr1_4:7133716-7133735 Msa0147240:intron 35.0%
TTTAAATGTAGGAAGTGGGT+CGG + chr1_4:7133987-7134006 Msa0147250:intron 35.0%
!!! TTTTTTGTCAAGTAGCCTAG+TGG - chr1_4:7134130-7134149 Msa0147240:intron 35.0%
GAGCTCACACAATTTAATTG+TGG - chr1_4:7134156-7134175 Msa0147240:intron 35.0%
! ACATTTTATATACAGGGGCA+GGG + chr1_4:7134208-7134227 Msa0147250:intron 35.0%
! TACATTTTATATACAGGGGC+AGG + chr1_4:7134209-7134228 Msa0147250:intron 35.0%
TTTGCCATATATTCTAGCCT+CGG - chr1_4:7134427-7134446 Msa0147240:intron 35.0%
!! GTGATTTTTGAAGATTCTCC+AGG + chr1_4:7134488-7134507 Msa0147250:CDS 35.0%
TGGTCTGAAGATTTGTAGAT+GGG + chr1_4:7134586-7134605 Msa0147250:intron 35.0%
ATGGTCTGAAGATTTGTAGA+TGG + chr1_4:7134587-7134606 Msa0147250:intron 35.0%
ATATCGCGAAAAAGTTGCAT+TGG - chr1_4:7134628-7134647 Msa0147240:intron 35.0%
TCTGAGTTATGTCTAGCAAT+GGG - chr1_4:7134656-7134675 Msa0147240:intron 35.0%
!! TGGGACAATTTGTTGTTTGT+GGG + chr1_4:7134999-7135018 Msa0147250:three_prime_UTR 35.0%
!! TTGGGACAATTTGTTGTTTG+TGG + chr1_4:7135000-7135019 Msa0147250:three_prime_UTR 35.0%
AAACAACAAATTGTCCCAAG+TGG - chr1_4:7135001-7135020 Msa0147240:three_prime_UTR 35.0%
!! CTTTCTGTTGTTTCATCAGA+AGG - chr1_4:7135094-7135113 Msa0147240:three_prime_UTR 35.0%
TTTACATCAGTCATGCGATT+CGG - chr1_4:7135197-7135216 Msa0147240:three_prime_UTR 35.0%
ATCAAAGAATCCAATCTTCG+TGG - chr1_4:7135247-7135266 Msa0147240:CDS 35.0%
TCAAAGAATCCAATCTTCGT+GGG - chr1_4:7135248-7135267 Msa0147240:CDS 35.0%
!! ATCGAAGTATCGAGTTCTTT+CGG - chr1_4:7135297-7135316 Msa0147240:CDS 35.0%
TAGTTACTTGTGATACTGTG+AGG - chr1_4:7135353-7135372 Msa0147240:CDS 35.0%
ATCAAAAGCAAGTAAGATCG+AGG - chr1_4:7135467-7135486 Msa0147240:CDS 35.0%
GCATAATAAGGATGGTTATC+AGG + chr1_4:7135534-7135553 None:intergenic 35.0%
GAAACTCTGCATAATAAGGA+TGG + chr1_4:7135542-7135561 None:intergenic 35.0%
TACTCTACTATGAGTCACTA+TGG - chr1_4:7135978-7135997 Msa0147240:intron 35.0%
ACTCTACTATGAGTCACTAT+GGG - chr1_4:7135979-7135998 Msa0147240:intron 35.0%
AGAGCATATGTGTATTCATG+TGG + chr1_4:7136011-7136030 None:intergenic 35.0%
TAGCTGATCACTATGAAATG+AGG - chr1_4:7136036-7136055 Msa0147240:CDS 35.0%
TTGCAACAACCTCGTTATTA+TGG - chr1_4:7136225-7136244 Msa0147240:intron 35.0%
AATTGGCTACCATAATAACG+AGG + chr1_4:7136237-7136256 None:intergenic 35.0%
!! AACAAGAGCACCAAAAATTG+TGG - chr1_4:7136292-7136311 Msa0147240:intron 35.0%
!! ACAAGAGCACCAAAAATTGT+GGG - chr1_4:7136293-7136312 Msa0147240:intron 35.0%
ACTTTGCCAATTAGGATTCT+GGG + chr1_4:7136373-7136392 None:intergenic 35.0%
TTTCTTCCACTTTGCCAATT+AGG + chr1_4:7136381-7136400 None:intergenic 35.0%
! TATGAGGAAAGATGATTTGG+GGG + chr1_4:7136431-7136450 None:intergenic 35.0%
GTATGAGGAAAGATGATTTG+GGG + chr1_4:7136432-7136451 None:intergenic 35.0%
GGTATGAGGAAAGATGATTT+GGG + chr1_4:7136433-7136452 None:intergenic 35.0%
TCCAAGATTACTTCAATCGT+TGG - chr1_4:7136477-7136496 Msa0147240:CDS 35.0%
TCCAACGATTGAAGTAATCT+TGG + chr1_4:7136481-7136500 None:intergenic 35.0%
! CTAACTACAAAGAAGCACAA+TGG - chr1_4:7136727-7136746 Msa0147240:intron 35.0%
TGTAGACATTCAGAAAGTTG+GGG + chr1_4:7136799-7136818 None:intergenic 35.0%
GTTGTAGACATTCAGAAAGT+TGG + chr1_4:7136801-7136820 None:intergenic 35.0%
ACACGAGATTTAAGAAACCA+TGG - chr1_4:7136827-7136846 Msa0147240:CDS 35.0%
TGTACATAATACATGGCTCA+AGG - chr1_4:7136853-7136872 Msa0147240:intron 35.0%
GTACATAATACATGGCTCAA+GGG - chr1_4:7136854-7136873 Msa0147240:intron 35.0%
AGGCTATCATTGAAAGAATG+GGG + chr1_4:7137010-7137029 None:intergenic 35.0%
CAGGCTATCATTGAAAGAAT+GGG + chr1_4:7137011-7137030 None:intergenic 35.0%
! ACAGGTTAGTTAAGGAATTG+TGG - chr1_4:7137041-7137060 Msa0147240:intron 35.0%
TCGATTTCCTTTGCTTCTTT+GGG + chr1_4:7137140-7137159 None:intergenic 35.0%
CAGTTAGGCCTTAAATCATA+AGG - chr1_4:7137160-7137179 Msa0147240:CDS 35.0%
! GACATGTGATTGCTAGTTTA+AGG + chr1_4:7137203-7137222 None:intergenic 35.0%
CTTGATGAATTCATTCTAGC+GGG + chr1_4:7137282-7137301 None:intergenic 35.0%
ATGAAGTTTGTGATTGCTGA+GGG + chr1_4:7137390-7137409 None:intergenic 35.0%
AATGAAGTTTGTGATTGCTG+AGG + chr1_4:7137391-7137410 None:intergenic 35.0%
CAGCAATCACAAACTTCATT+TGG - chr1_4:7137391-7137410 Msa0147240:intron 35.0%
CGTAGTTAACAGTAAGACTT+AGG - chr1_4:7137429-7137448 Msa0147240:intron 35.0%
TGCTCAATTAGAAACTCAAC+AGG - chr1_4:7137514-7137533 Msa0147240:intron 35.0%
AAGTGAGAATAAGGTTGCTT+TGG - chr1_4:7137609-7137628 Msa0147240:intron 35.0%
!! TAAGGTTGCTTTGGATCTTT+TGG - chr1_4:7137618-7137637 Msa0147240:intron 35.0%
!! AAGGTTGCTTTGGATCTTTT+GGG - chr1_4:7137619-7137638 Msa0147240:intron 35.0%
CTTTCGATCAAAGTGGAAAA+TGG - chr1_4:7137920-7137939 Msa0147240:CDS 35.0%
TTCGATCAAAGTGGAAAATG+GGG - chr1_4:7137922-7137941 Msa0147240:CDS 35.0%
TAGACTCACTATTCAACTGT+AGG + chr1_4:7137992-7138011 None:intergenic 35.0%
TGTCAGAATTAGAATTAGCG+GGG + chr1_4:7138039-7138058 None:intergenic 35.0%
GTGTCAGAATTAGAATTAGC+GGG + chr1_4:7138040-7138059 None:intergenic 35.0%
GGTGTCAGAATTAGAATTAG+CGG + chr1_4:7138041-7138060 None:intergenic 35.0%
GTGGAATATAAAAGGGTAGA+TGG + chr1_4:7138176-7138195 None:intergenic 35.0%
CTCGGAAATCGAGATAAATT+AGG + chr1_4:7138219-7138238 None:intergenic 35.0%
! TGACATCACTGATAATGAGT+TGG + chr1_4:7138525-7138544 None:intergenic 35.0%
GTACACACAAGGTAATATAC+CGG + chr1_4:7138580-7138599 None:intergenic 35.0%
!!! AGCATTCTGCTGTTTTAAAG+TGG + chr1_4:7138690-7138709 None:intergenic 35.0%
TGATGGGAAAATCAAACATG+AGG - chr1_4:7138767-7138786 Msa0147240:intron 35.0%
GATGCACAGTTACTAAACAA+CGG - chr1_4:7138816-7138835 Msa0147240:intron 35.0%
ATGCACAGTTACTAAACAAC+GGG - chr1_4:7138817-7138836 Msa0147240:intron 35.0%
ATTTCATCCCAAAAGCTTCA+CGG - chr1_4:7138886-7138905 Msa0147240:intron 35.0%
! AATCTATCCGTGAAGCTTTT+GGG + chr1_4:7138896-7138915 None:intergenic 35.0%
! AAATCTATCCGTGAAGCTTT+TGG + chr1_4:7138897-7138916 None:intergenic 35.0%
CTTGAAAGGTCCTAGTTAAT+TGG + chr1_4:7138924-7138943 None:intergenic 35.0%
CAATTAACTAGGACCTTTCA+AGG - chr1_4:7138922-7138941 Msa0147240:intron 35.0%
ATAAAGGACATTCAAGGTCT+TGG - chr1_4:7138999-7139018 Msa0147240:intron 35.0%
TTAGACCTTACTGTTGTCAT+TGG + chr1_4:7139029-7139048 None:intergenic 35.0%
AAGGTCTAAGAAGGCAAAAA+AGG - chr1_4:7139040-7139059 Msa0147240:intron 35.0%
TGTTCTCCAACCAATTAACT+TGG - chr1_4:7139110-7139129 Msa0147240:intron 35.0%
AGGATTCCAAGTTAATTGGT+TGG + chr1_4:7139119-7139138 None:intergenic 35.0%
ACGTGAAAATGACTGTTTGA+AGG + chr1_4:7139139-7139158 None:intergenic 35.0%
!! AGTCATTTTCACGTGTGATA+TGG - chr1_4:7139145-7139164 Msa0147240:intron 35.0%
!! GTCATTTTCACGTGTGATAT+GGG - chr1_4:7139146-7139165 Msa0147240:intron 35.0%
AAAGTTAGGGACTAATTTGG+TGG + chr1_4:7139210-7139229 None:intergenic 35.0%
TTTGTTCTCTAACTCCTAGA+AGG - chr1_4:7139286-7139305 Msa0147240:intron 35.0%
CGACAATTTATCCCACTAAA+TGG - chr1_4:7139319-7139338 Msa0147240:CDS 35.0%
ACACTAATTTCGTTGAGGTA+TGG + chr1_4:7139480-7139499 None:intergenic 35.0%
TGAAGATTTCGAGAAACACA+AGG + chr1_4:7139548-7139567 None:intergenic 35.0%
TGTTTCTCGAAATCTTCAAG+AGG - chr1_4:7139550-7139569 Msa0147240:intron 35.0%
TGTTCTGCAACAGAATGAAT+CGG - chr1_4:7139608-7139627 Msa0147240:CDS 35.0%
AAACACGATCCAATCCAAAA+AGG - chr1_4:7139646-7139665 Msa0147240:five_prime_UTR 35.0%
AACACGATCCAATCCAAAAA+GGG - chr1_4:7139647-7139666 Msa0147240:five_prime_UTR 35.0%
CAGTTAAAGGGAACATGGAA+TGG + chr1_4:7131929-7131948 None:intergenic 40.0%
GAGAACAGTTAAAGGGAACA+TGG + chr1_4:7131934-7131953 Msa0147250:five_prime_UTR 40.0%
GAGAGAGAGAGAACAGTTAA+AGG + chr1_4:7131942-7131961 Msa0147250:five_prime_UTR 40.0%
GTTGTGAAGTGAAGTTGAAG+AGG + chr1_4:7131980-7131999 Msa0147250:five_prime_UTR 40.0%
AAGACTCAAAACATGAAGCG+TGG - chr1_4:7132144-7132163 Msa0147240:intron 40.0%
AGAACCAGAAACTCCTCTTT+GGG + chr1_4:7133697-7133716 Msa0147250:intron 40.0%
TAGAACCAGAAACTCCTCTT+TGG + chr1_4:7133698-7133717 Msa0147250:intron 40.0%
TGGCTCCAACCATATTATCA+AGG - chr1_4:7133782-7133801 Msa0147240:intron 40.0%
ACTTGATGGAGAACCTTTCA+TGG - chr1_4:7133806-7133825 Msa0147240:intron 40.0%
! ACTGAGGAGTTTTCCATGAA+AGG + chr1_4:7133822-7133841 Msa0147250:intron 40.0%
!!! TTTTTTGTCAGGTAGCCTAG+TGG + chr1_4:7134025-7134044 Msa0147250:intron 40.0%
! CATTTTATATACAGGGGCAG+GGG + chr1_4:7134207-7134226 Msa0147250:intron 40.0%
TGAACCGAGGCTAGAATATA+TGG + chr1_4:7134434-7134453 Msa0147250:intron 40.0%
TATATTCTAGCCTCGGTTCA+AGG - chr1_4:7134434-7134453 Msa0147240:intron 40.0%
TGTCGTGAAAGTTGTTTACC+TGG - chr1_4:7134467-7134486 Msa0147240:intron 40.0%
ATGGTCAAGAACTCTTTGAG+AGG - chr1_4:7134528-7134547 Msa0147240:three_prime_UTR 40.0%
! TGGTCAAGAACTCTTTGAGA+GGG - chr1_4:7134529-7134548 Msa0147240:intron 40.0%
! CTTTGAGAGGGCAAAGTTAT+TGG - chr1_4:7134541-7134560 Msa0147240:intron 40.0%
TATTCGTGATTAACCGTCTC+AGG + chr1_4:7134611-7134630 Msa0147250:intron 40.0%
CTCTGAGTTATGTCTAGCAA+TGG - chr1_4:7134655-7134674 Msa0147240:intron 40.0%
CTGAGTTATGTCTAGCAATG+GGG - chr1_4:7134657-7134676 Msa0147240:intron 40.0%
CACAAATTTCACAATGCGAG+AGG - chr1_4:7134793-7134812 Msa0147240:three_prime_UTR 40.0%
ACCAGATGTTGAATTAGACG+CGG - chr1_4:7134818-7134837 Msa0147240:three_prime_UTR 40.0%
CCTGTGATATTTCACCATAG+TGG + chr1_4:7135420-7135439 Msa0147250:three_prime_UTR 40.0%
CCACTATGGTGAAATATCAC+AGG - chr1_4:7135417-7135436 Msa0147240:CDS 40.0%
! GCTTCAACATCTGGAGTATA+TGG - chr1_4:7135442-7135461 Msa0147240:CDS 40.0%
AATCTCTTGTCCTTGTCAAC+TGG - chr1_4:7135562-7135581 Msa0147240:intron 40.0%
TCCTTGTCAACTGGAAGTTA+TGG - chr1_4:7135571-7135590 Msa0147240:intron 40.0%
TCCATAACTTCCAGTTGACA+AGG + chr1_4:7135575-7135594 None:intergenic 40.0%
GGTACATGCAAATTTGACGA+CGG + chr1_4:7135646-7135665 None:intergenic 40.0%
ATGATCAAGGTAAACTGTCG+AGG + chr1_4:7135734-7135753 None:intergenic 40.0%
CTACAACAGTCAGATGATCA+AGG + chr1_4:7135747-7135766 None:intergenic 40.0%
CTTGATCATCTGACTGTTGT+AGG - chr1_4:7135745-7135764 Msa0147240:intron 40.0%
GAACGGAGTATAGAAGAGTT+AGG + chr1_4:7135832-7135851 None:intergenic 40.0%
!! TAGAGAGTGTTTGAGAAGCT+TGG - chr1_4:7135865-7135884 Msa0147240:intron 40.0%
!! CAAGAGCACCAAAAATTGTG+GGG - chr1_4:7136294-7136313 Msa0147240:intron 40.0%
!! AAGAGCACCAAAAATTGTGG+GGG - chr1_4:7136295-7136314 Msa0147240:intron 40.0%
CACTTTGCCAATTAGGATTC+TGG + chr1_4:7136374-7136393 None:intergenic 40.0%
CAGAATCCTAATTGGCAAAG+TGG - chr1_4:7136372-7136391 Msa0147240:CDS 40.0%
! ATGAGGAAAGATGATTTGGG+GGG + chr1_4:7136430-7136449 None:intergenic 40.0%
GGGTATGAGGAAAGATGATT+TGG + chr1_4:7136434-7136453 None:intergenic 40.0%
AAGATCTTGCCCATTTGTCT+TGG + chr1_4:7136530-7136549 None:intergenic 40.0%
GTGTATCACTCATTGTGAGA+CGG - chr1_4:7136664-7136683 Msa0147240:CDS 40.0%
TGTATCACTCATTGTGAGAC+GGG - chr1_4:7136665-7136684 Msa0147240:CDS 40.0%
ATAATACATGGCTCAAGGGT+GGG - chr1_4:7136858-7136877 Msa0147240:intron 40.0%
GGCTATCATTGAAAGAATGG+GGG + chr1_4:7137009-7137028 None:intergenic 40.0%
GCAGGCTATCATTGAAAGAA+TGG + chr1_4:7137012-7137031 None:intergenic 40.0%
ATAGCCTGCAAACACAAAAC+AGG - chr1_4:7137023-7137042 Msa0147240:intron 40.0%
! CTAACCTGTTTTGTGTTTGC+AGG + chr1_4:7137030-7137049 None:intergenic 40.0%
TTCTCTGCTTACGACAATTG+CGG + chr1_4:7137112-7137131 None:intergenic 40.0%
AAATGTGCCCAAAGAAGCAA+AGG - chr1_4:7137130-7137149 Msa0147240:CDS 40.0%
! GTCGATTTCCTTTGCTTCTT+TGG + chr1_4:7137141-7137160 None:intergenic 40.0%
AGCAAAGGAAATCGACAGTT+AGG - chr1_4:7137145-7137164 Msa0147240:CDS 40.0%
ACTGCAAGAAACAAGCAAGA+AGG + chr1_4:7137256-7137275 None:intergenic 40.0%
!! AGGTTGCTTTGGATCTTTTG+GGG - chr1_4:7137620-7137639 Msa0147240:intron 40.0%
AACAAGGCTTGTGTTGAAGA+CGG - chr1_4:7137719-7137738 Msa0147240:intron 40.0%
! CGGAATCAAATTTTCCTGCA+AGG - chr1_4:7137739-7137758 Msa0147240:intron 40.0%
CTAGGTCTTCTACAAGAAGT+TGG - chr1_4:7137811-7137830 Msa0147240:intron 40.0%
CAATGTCTGCGAACTTGATT+TGG + chr1_4:7138450-7138469 None:intergenic 40.0%
AAAACAGTCCAGCATATCTC+CGG - chr1_4:7138558-7138577 Msa0147240:intron 40.0%
GTAATATACCGGAGATATGC+TGG + chr1_4:7138569-7138588 None:intergenic 40.0%
ACATGAGGAAGCAAAAGAGA+TGG - chr1_4:7138782-7138801 Msa0147240:intron 40.0%
CATGAGGAAGCAAAAGAGAT+GGG - chr1_4:7138783-7138802 Msa0147240:intron 40.0%
! AGGGTATTTGATGAGGACAT+AGG - chr1_4:7138954-7138973 Msa0147240:intron 40.0%
! GACATAGGAAGCATAACCAA+GGG - chr1_4:7138969-7138988 Msa0147240:intron 40.0%
! GGAAGCATAAAGGACATTCA+AGG - chr1_4:7138993-7139012 Msa0147240:intron 40.0%
GATCTCCAATGACAACAGTA+AGG - chr1_4:7139021-7139040 Msa0147240:intron 40.0%
GACAACAGTAAGGTCTAAGA+AGG - chr1_4:7139031-7139050 Msa0147240:intron 40.0%
! AGAGCTAAATCACGTTTTGC+TGG + chr1_4:7139084-7139103 None:intergenic 40.0%
TGGGATCTCTATTTACGACA+AGG - chr1_4:7139503-7139522 Msa0147240:intron 40.0%
ATTCTGTTGCAGAACAGACA+GGG + chr1_4:7139604-7139623 None:intergenic 40.0%
ACACGATCCAATCCAAAAAG+GGG - chr1_4:7139648-7139667 Msa0147240:five_prime_UTR 40.0%
ATTACAGCCATGAAGAAGCG+CGG - chr1_4:7133448-7133467 Msa0147240:intron 45.0%
!!! CTCCTCTTTGGGACCAATTT+TGG + chr1_4:7133686-7133705 Msa0147250:intron 45.0%
AGCTGAGACTCTGTATGCAT+TGG - chr1_4:7133740-7133759 Msa0147240:intron 45.0%
GCAACAATGTTTCCTCACAG+TGG - chr1_4:7133762-7133781 Msa0147240:intron 45.0%
! GGAAAACTCCTCAGTTTTGC+AGG - chr1_4:7133827-7133846 Msa0147240:intron 45.0%
CTTCATGTCCTGCAAAACTG+AGG + chr1_4:7133838-7133857 Msa0147250:intron 45.0%
! CTCAGTTTTGCAGGACATGA+AGG - chr1_4:7133836-7133855 Msa0147240:intron 45.0%
TGCCAATTGAGCTAAGCTCA+CGG + chr1_4:7133938-7133957 Msa0147250:intron 45.0%
TGAGAGGGCAAAGTTATTGG+TGG - chr1_4:7134544-7134563 Msa0147240:intron 45.0%
ACCGCGTCTAATTCAACATC+TGG + chr1_4:7134822-7134841 Msa0147250:three_prime_UTR 45.0%
GATGTTGAATTAGACGCGGT+AGG - chr1_4:7134822-7134841 Msa0147240:three_prime_UTR 45.0%
TATGACACTGAACACAAGCC+TGG + chr1_4:7135133-7135152 Msa0147250:three_prime_UTR 45.0%
TTCATGACACCCACGAAGAT+TGG + chr1_4:7135260-7135279 Msa0147250:three_prime_UTR 45.0%
! TCTTCGTGGGTGTCATGAAA+CGG - chr1_4:7135261-7135280 Msa0147240:CDS 45.0%
! CTTTTGCAGCAATGCCACTA+TGG - chr1_4:7135403-7135422 Msa0147240:CDS 45.0%
ATGGTTATCAGGGCGTGAAA+GGG + chr1_4:7135523-7135542 None:intergenic 45.0%
AGTCAATAGCACAGCAGCAA+AGG - chr1_4:7135674-7135693 Msa0147240:intron 45.0%
GTCAATAGCACAGCAGCAAA+GGG - chr1_4:7135675-7135694 Msa0147240:intron 45.0%
CGACTTTGATGCGTAGGAAT+TGG + chr1_4:7135706-7135725 None:intergenic 45.0%
! GTTGCATCCCCCACAATTTT+TGG + chr1_4:7136305-7136324 None:intergenic 45.0%
! TCTTGTGATGTAGGGGTATG+AGG + chr1_4:7136447-7136466 None:intergenic 45.0%
TTTCCCCCATCCAAGACAAA+TGG - chr1_4:7136517-7136536 Msa0147240:CDS 45.0%
TTCCCCCATCCAAGACAAAT+GGG - chr1_4:7136518-7136537 Msa0147240:CDS 45.0%
TTGCCCATTTGTCTTGGATG+GGG + chr1_4:7136524-7136543 None:intergenic 45.0%
CTTGCCCATTTGTCTTGGAT+GGG + chr1_4:7136525-7136544 None:intergenic 45.0%
TCTTGCCCATTTGTCTTGGA+TGG + chr1_4:7136526-7136545 None:intergenic 45.0%
AGGGACAGATTCCAAAGTAC+TGG - chr1_4:7136577-7136596 Msa0147240:CDS 45.0%
GTATCACTCATTGTGAGACG+GGG - chr1_4:7136666-7136685 Msa0147240:intron 45.0%
TATCACTCATTGTGAGACGG+GGG - chr1_4:7136667-7136686 Msa0147240:intron 45.0%
CATAATACATGGCTCAAGGG+TGG - chr1_4:7136857-7136876 Msa0147240:intron 45.0%
ATTTCAGCAGAGTCACGACA+GGG + chr1_4:7136958-7136977 None:intergenic 45.0%
! GTTTAAGGCTTGAGCTGCAT+AGG + chr1_4:7137188-7137207 None:intergenic 45.0%
GTTTGTGATTGCTGAGGGTT+GGG + chr1_4:7137385-7137404 None:intergenic 45.0%
AGTTTGTGATTGCTGAGGGT+TGG + chr1_4:7137386-7137405 None:intergenic 45.0%
ACTGCAGCGAAGTGAGAATA+AGG - chr1_4:7137600-7137619 Msa0147240:intron 45.0%
!! GATGCTGCTTTCGATCAAAG+TGG - chr1_4:7137913-7137932 Msa0147240:intron 45.0%
CAAAGTGGAAAATGGGGCAA+AGG - chr1_4:7137928-7137947 Msa0147240:CDS 45.0%
TGATGGCACAAAAAGAGCTG+AGG + chr1_4:7138062-7138081 None:intergenic 45.0%
GGATGGGTGGATATGGAATA+GGG + chr1_4:7138155-7138174 None:intergenic 45.0%
TGGATGGGTGGATATGGAAT+AGG + chr1_4:7138156-7138175 None:intergenic 45.0%
TAAAAGGGTAGATGGATGGG+TGG + chr1_4:7138168-7138187 None:intergenic 45.0%
GTTGCAGTTTCGTACACACA+AGG + chr1_4:7138591-7138610 None:intergenic 45.0%
AGGACCTTTCAAGGAAAACG+CGG - chr1_4:7138931-7138950 Msa0147240:intron 45.0%
! GGACATAGGAAGCATAACCA+AGG - chr1_4:7138968-7138987 Msa0147240:intron 45.0%
! ATAGGAAGCATAACCAAGGG+AGG - chr1_4:7138972-7138991 Msa0147240:intron 45.0%
! AACCAAGGGAGGAAGCATAA+AGG - chr1_4:7138983-7139002 Msa0147240:intron 45.0%
GTCGTTGTTGTAGTCCTTCT+AGG + chr1_4:7139303-7139322 None:intergenic 45.0%
TGTAGCTGACCCCATTTAGT+GGG + chr1_4:7139333-7139352 None:intergenic 45.0%
ATGTAGCTGACCCCATTTAG+TGG + chr1_4:7139334-7139353 None:intergenic 45.0%
ACTAAATGGGGTCAGCTACA+TGG - chr1_4:7139333-7139352 Msa0147240:CDS 45.0%
GAAACACAAGGTCGAATACG+AGG + chr1_4:7139536-7139555 None:intergenic 45.0%
CATTCTGTTGCAGAACAGAC+AGG + chr1_4:7139605-7139624 None:intergenic 45.0%
!! TGATTTAATATATTATAAAT+TGG + chr1_4:7138015-7138034 None:intergenic 5.0%
GCTATGGTGCTTCTGTTCCA+AGG - chr1_4:7132609-7132628 Msa0147240:intron 50.0%
GTTCCAAGGAAGCTACGTTC+AGG - chr1_4:7132623-7132642 Msa0147240:intron 50.0%
TCACCTGAACGTAGCTTCCT+TGG + chr1_4:7132629-7132648 Msa0147250:intron 50.0%
GGCCAAAATTGGTCCCAAAG+AGG - chr1_4:7133681-7133700 Msa0147240:intron 50.0%
TGGTCCCAAAGAGGAGTTTC+TGG - chr1_4:7133690-7133709 Msa0147240:intron 50.0%
ATATGGTTGGAGCCACTGTG+AGG + chr1_4:7133777-7133796 Msa0147250:intron 50.0%
CCAATTGAGCTAAGCTCACG+GGG + chr1_4:7133936-7133955 Msa0147250:intron 50.0%
GCCAATTGAGCTAAGCTCAC+GGG + chr1_4:7133937-7133956 Msa0147250:intron 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr1_4:7134148-7134167 Msa0147250:intron 50.0%
AAGACTTTCGCCTTGAACCG+AGG + chr1_4:7134447-7134466 Msa0147250:intron 50.0%
TCTTCAGACCATGCCTGAGA+CGG - chr1_4:7134595-7134614 Msa0147240:intron 50.0%
GTGATTAACCGTCTCAGGCA+TGG + chr1_4:7134606-7134625 Msa0147250:intron 50.0%
GTACCCTGCGTTCACATTTC+AGG - chr1_4:7134909-7134928 Msa0147240:three_prime_UTR 50.0%
TGGCCTGAAATGTGAACGCA+GGG + chr1_4:7134915-7134934 Msa0147250:three_prime_UTR 50.0%
CATCAGAAGGCCTTGCATTG+TGG - chr1_4:7135107-7135126 Msa0147240:three_prime_UTR 50.0%
! CTTCGTGGGTGTCATGAAAC+GGG - chr1_4:7135262-7135281 Msa0147240:CDS 50.0%
TCACAGGCTGCTTCAACATC+TGG - chr1_4:7135433-7135452 Msa0147240:CDS 50.0%
TGGTTATCAGGGCGTGAAAG+GGG + chr1_4:7135522-7135541 None:intergenic 50.0%
GATGGTTATCAGGGCGTGAA+AGG + chr1_4:7135524-7135543 None:intergenic 50.0%
GCGTAACGACTTTGATGCGT+AGG + chr1_4:7135712-7135731 None:intergenic 50.0%
TCTGACTGTTGTAGGACCAC+AGG - chr1_4:7135753-7135772 Msa0147240:intron 50.0%
TGCAACAAGCAGCTCAAGCT+AGG - chr1_4:7136319-7136338 Msa0147240:intron 50.0%
CGTGGACCCAGAATCCTAAT+TGG - chr1_4:7136364-7136383 Msa0147240:CDS 50.0%
! AAGATGATTTGGGGGGCACA+TGG + chr1_4:7136423-7136442 None:intergenic 50.0%
TGCCCATTTGTCTTGGATGG+GGG + chr1_4:7136523-7136542 None:intergenic 50.0%
CATTTCAGCAGAGTCACGAC+AGG + chr1_4:7136959-7136978 None:intergenic 50.0%
CATCAGAAGATGGTCGGTTG+TGG + chr1_4:7138101-7138120 None:intergenic 50.0%
CAACCGACCATCTTCTGATG+TGG - chr1_4:7138101-7138120 Msa0147240:CDS 50.0%
GTGCCACATCAGAAGATGGT+CGG + chr1_4:7138107-7138126 None:intergenic 50.0%
! TGGAGTGCCACATCAGAAGA+TGG + chr1_4:7138111-7138130 None:intergenic 50.0%
GGTAGATGGATGGGTGGATA+TGG + chr1_4:7138162-7138181 None:intergenic 50.0%
ACCTTTCAAGGAAAACGCGG+AGG - chr1_4:7138934-7138953 Msa0147240:intron 50.0%
CCTTTCAAGGAAAACGCGGA+GGG - chr1_4:7138935-7138954 Msa0147240:intron 50.0%
!! AACGCGGAGGGTATTTGATG+AGG - chr1_4:7138947-7138966 Msa0147240:intron 50.0%
GTCCTTTATGCTTCCTCCCT+TGG + chr1_4:7138988-7139007 None:intergenic 50.0%
TCCCTAACTTTGTAGGGCAC+AGG - chr1_4:7139219-7139238 Msa0147240:intron 50.0%
GCCTGTGCCCTACAAAGTTA+GGG + chr1_4:7139223-7139242 None:intergenic 50.0%
TGCCTGTGCCCTACAAAGTT+AGG + chr1_4:7139224-7139243 None:intergenic 50.0%
GGGTCAGCTACATGGATCAA+AGG - chr1_4:7139341-7139360 Msa0147240:CDS 50.0%
GGAGTACGACGACGTTATTG+TGG - chr1_4:7139815-7139834 Msa0147240:five_prime_UTR 50.0%
CCCCGTGAGCTTAGCTCAAT+TGG - chr1_4:7133933-7133952 Msa0147240:intron 55.0%
ATGTGTGAGCTCCAGCCACT+AGG - chr1_4:7134007-7134026 Msa0147240:intron 55.0%
TTGTCAGGTAGCCTAGTGGC+TGG + chr1_4:7134021-7134040 Msa0147250:intron 55.0%
CTGGCCTGAAATGTGAACGC+AGG + chr1_4:7134916-7134935 Msa0147250:three_prime_UTR 55.0%
ACAAGCCTGGCCACAATGCA+AGG + chr1_4:7135120-7135139 Msa0147250:three_prime_UTR 55.0%
AGGGCGTGAAAGGGGATAAG+GGG + chr1_4:7135514-7135533 Msa0147250:three_prime_UTR 55.0%
CAGGGCGTGAAAGGGGATAA+GGG + chr1_4:7135515-7135534 Msa0147250:three_prime_UTR 55.0%
TCAGGGCGTGAAAGGGGATA+AGG + chr1_4:7135516-7135535 Msa0147250:three_prime_UTR 55.0%
GTGATTGCTGAGGGTTGGGT+TGG + chr1_4:7137381-7137400 None:intergenic 55.0%
! CCCTCCGCGTTTTCCTTGAA+AGG + chr1_4:7138938-7138957 None:intergenic 55.0%
TTCGCGACCGCGCTTCTTCA+TGG + chr1_4:7133458-7133477 Msa0147250:intron 60.0%
! GTGGAGAAGTGGAGTGTCCG+AGG - chr1_4:7134175-7134194 Msa0147240:intron 60.0%
GAAGGCCTTGCATTGTGGCC+AGG - chr1_4:7135112-7135131 Msa0147240:three_prime_UTR 60.0%
!! TGCTGAGGGTTGGGTTGGAG+TGG + chr1_4:7137376-7137395 None:intergenic 60.0%
AGGGGCAGGGGTTCGAACCT+CGG + chr1_4:7134195-7134214 Msa0147250:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 7131921 7139876 7131921 ID=Msa0147240;Name=Msa0147240
chr1_4 mRNA 7131921 7139876 7131921 ID=Msa0147240-mRNA-1;Parent=Msa0147240;Name=Msa0147240-mRNA-1;_AED=0.05;_eAED=0.05;_QI=235|1|1|1|0.71|0.66|15|988|614
chr1_4 exon 7131921 7132080 7131921 ID=Msa0147240-mRNA-1:exon:3130;Parent=Msa0147240-mRNA-1
chr1_4 exon 7132177 7132314 7132177 ID=Msa0147240-mRNA-1:exon:3129;Parent=Msa0147240-mRNA-1
chr1_4 exon 7133194 7133372 7133194 ID=Msa0147240-mRNA-1:exon:3128;Parent=Msa0147240-mRNA-1
chr1_4 exon 7134490 7134547 7134490 ID=Msa0147240-mRNA-1:exon:3127;Parent=Msa0147240-mRNA-1
chr1_4 exon 7134775 7135578 7134775 ID=Msa0147240-mRNA-1:exon:3126;Parent=Msa0147240-mRNA-1
chr1_4 exon 7136023 7136241 7136023 ID=Msa0147240-mRNA-1:exon:3125;Parent=Msa0147240-mRNA-1
chr1_4 exon 7136320 7136684 7136320 ID=Msa0147240-mRNA-1:exon:3124;Parent=Msa0147240-mRNA-1
chr1_4 exon 7136809 7136866 7136809 ID=Msa0147240-mRNA-1:exon:3123;Parent=Msa0147240-mRNA-1
chr1_4 exon 7136958 7137024 7136958 ID=Msa0147240-mRNA-1:exon:3122;Parent=Msa0147240-mRNA-1
chr1_4 exon 7137119 7137353 7137119 ID=Msa0147240-mRNA-1:exon:3121;Parent=Msa0147240-mRNA-1
chr1_4 exon 7137915 7138128 7137915 ID=Msa0147240-mRNA-1:exon:3120;Parent=Msa0147240-mRNA-1
chr1_4 exon 7138236 7138342 7138236 ID=Msa0147240-mRNA-1:exon:3119;Parent=Msa0147240-mRNA-1
chr1_4 exon 7139153 7139201 7139153 ID=Msa0147240-mRNA-1:exon:3118;Parent=Msa0147240-mRNA-1
chr1_4 exon 7139315 7139442 7139315 ID=Msa0147240-mRNA-1:exon:3117;Parent=Msa0147240-mRNA-1
chr1_4 exon 7139590 7139876 7139590 ID=Msa0147240-mRNA-1:exon:3116;Parent=Msa0147240-mRNA-1
chr1_4 five_prime_UTR 7139642 7139876 7139642 ID=Msa0147240-mRNA-1:five_prime_utr;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7139590 7139641 7139590 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7139315 7139442 7139315 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7139153 7139201 7139153 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7138236 7138342 7138236 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7137915 7138128 7137915 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7137119 7137353 7137119 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7136958 7137024 7136958 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7136809 7136866 7136809 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7136320 7136684 7136320 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7136023 7136241 7136023 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 CDS 7135228 7135578 7135228 ID=Msa0147240-mRNA-1:cds;Parent=Msa0147240-mRNA-1
chr1_4 three_prime_UTR 7134775 7135227 7134775 ID=Msa0147240-mRNA-1:three_prime_utr;Parent=Msa0147240-mRNA-1
chr1_4 three_prime_UTR 7134490 7134547 7134490 ID=Msa0147240-mRNA-1:three_prime_utr;Parent=Msa0147240-mRNA-1
chr1_4 three_prime_UTR 7133194 7133372 7133194 ID=Msa0147240-mRNA-1:three_prime_utr;Parent=Msa0147240-mRNA-1
chr1_4 three_prime_UTR 7132177 7132314 7132177 ID=Msa0147240-mRNA-1:three_prime_utr;Parent=Msa0147240-mRNA-1
chr1_4 three_prime_UTR 7131921 7132080 7131921 ID=Msa0147240-mRNA-1:three_prime_utr;Parent=Msa0147240-mRNA-1
Gene Sequence

>Msa0147240

ATGAAGCGTGGAGCTAAGAAGCAAAGACACACAAATAAACTCTTGTTTGGTGCTTTCCAATTCTCAAAGAAACCAAAGAAGCAAGAAAAAGTTAGAAGCTTAAGTGCTGTTACTCAAATGAGTTGTCATGTTTCTGAAAAACAACAAGAACATCAAAAGAGATTTAAGGTTCATAATAATTTTTTGAATGGATGCTATGGTGCTTCTGTTCCAAGGAAGCTACGTTCAGCCATGAAGAAGCGCGGTCGCGAATCCATCTTACATGATAAAGAAAAGAAGAACCATAAGTTCAATGGAATAGAATCTCTAGAAAAGGATAATGTAAAGAAGTCAAAAAAACAGGAAATTGGCCAAAATTGGTCCCAAAGAGGAGTTTCTGGTTCTATCACAAAAGATGAGGAAGAGGTAGCTGAGACTCTGTATGCATTGGCAACAATGTTTCCTCACAGTGGCTCCAACCATATTATCAAGGAACTTGATGGAGAACCTTTCATGGAAAACTCCTCAGTTTTGCAGGACATGAAGGAGAATGTTAATGCTTCTCTTGAAGCCTCGGTTCAAGGCGAAAGTCTTTGTCGTGAAAGTTGTTTACCTGGAGAATCTTCAAAAATCACGTCTTTGAATGAAACTATTAATGGTCAAGAACTCTTTGAGAGGGCAAAGTTATTGGTGGCATCTCATAGCACAATCCCATCTACAAATCTTCAGACCATGCCTGAGACGGTTAATCACGAATATCGCGAAAAAGTTGCATTGGATGACTCTGAGTTATGTCTAGCAATGGGATTAAATATGACTGGACAATCACAAATTTCACAATGCGAGAGGAAACCAGATGTTGAATTAGACGCGGCCAGAAATTTTGATAGCAAGCAAAAACAGCAGTTGATGAATGAACAAGTAAAAAATGAAGGCCTTGCATTGTGGCCAGGCTTGTGTTCAGTGTCATATGATGTTAGTCATAAAAGATCACGTAAAAGATGTGCAACTCATGTTTACATCAGTCATGCGATTCGGAGTTTAGAGTCGCCAAAACAAAAAGTTATCAAAGAATCCAATCTTCGTGGGTGTCATGAAACGGGAGCAAGCGAAAGATCGAAGTATCGAGTTCTTTCGGAAGTACAAAACTTGAACAGAATGATAAATGGAGTAGTTACTTGTGATACTGTGAGGAATCCTAATGAAAGTAAGAATGGCATTCTTTTGCAGCAATGCCACTATGGTGAAATATCACAGGCTGCTTCAACATCTGGAGTATATGGTCATCAAAAGCAAAGTTTCAATCTCTTGTCCTTGTCAACTGGAAGTTATGGATTAAAGGTCGACAACAATAATTATAATAAAGTTCGAAGTAGGTTGGAACCGTCGTCAAATTTGCATGTACCTTATTTTCAGTCAATAGCACAGCAGCAAAGGGTAATGCCAATTCCTACGCATCAAAGTCGTTACGCCTCGACAGTTTACCTTGATCATCTGACTGTTGTAGGACCACAGCTTCAGTTGCAACAACCTCGTTATTATGGTAGCCAATTATATGGAACTCAATATGGTTCAACAGTCTCAAATAAACAAGAGCACCAAAAATTGTGGGGGATGCAACAAGCAGCTCAAGCTAGGTCATCTGAAAATTGCAATATTACGTGGACCCAGAATCCTAATTGGCAAAGTGGAAGAAATGACTATTCTGCAATGGGTCCATGTGCCCCCCAAATCATCTTTCCTCATACCCCTACATCACAAGAAATATTTGGATCCAAGATTACTTCAATCGTTGGACAACAGCAGCAGCTCATTTCCCCCATCCAAGACAAATGGGCAAGATCTTCATCTCAATTCTATATGTGA

Protein sequence

>Msa0147240

MKRGAKKQRHTNKLLFGAFQFSKKPKKQEKVRSLSAVTQMSCHVSEKQQEHQKRFKVHNNFLNGCYGASVPRKLRSAMKKRGRESILHDKEKKNHKFNGIESLEKDNVKKSKKQEIGQNWSQRGVSGSITKDEEEVAETLYALATMFPHSGSNHIIKELDGEPFMENSSVLQDMKENVNASLEASVQGESLCRESCLPGESSKITSLNETINGQELFERAKLLVASHSTIPSTNLQTMPETVNHEYREKVALDDSELCLAMGLNMTGQSQISQCERKPDVELDAARNFDSKQKQQLMNEQVKNEGLALWPGLCSVSYDVSHKRSRKRCATHVYISHAIRSLESPKQKVIKESNLRGCHETGASERSKYRVLSEVQNLNRMINGVVTCDTVRNPNESKNGILLQQCHYGEISQAASTSGVYGHQKQSFNLLSLSTGSYGLKVDNNNYNKVRSRLEPSSNLHVPYFQSIAQQQRVMPIPTHQSRYASTVYLDHLTVVGPQLQLQQPRYYGSQLYGTQYGSTVSNKQEHQKLWGMQQAAQARSSENCNITWTQNPNWQSGRNDYSAMGPCAPQIIFPHTPTSQEIFGSKITSIVGQQQQLISPIQDKWARSSSQFYM*