AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039490 MtrunA17_Chr1g0203671 98.737 792 10 0 1 792 1 792 0.0 1617
Msa0039490 MtrunA17_Chr8g0350321 64.848 788 247 12 14 790 39 807 0.0 997
Msa0039490 MtrunA17_Chr7g0246631 65.706 729 221 9 69 790 69 775 0.0 976
Msa0039490 MtrunA17_Chr6g0472471 58.236 771 295 12 36 792 11 768 0.0 879
Msa0039490 MtrunA17_Chr2g0322731 53.678 734 301 10 60 789 67 765 0.0 739
Msa0039490 MtrunA17_Chr4g0024351 51.907 734 317 11 60 789 28 729 0.0 729
Msa0039490 MtrunA17_Chr6g0481041 46.133 724 349 15 86 789 21 723 0.0 628
Msa0039490 MtrunA17_Chr5g0410711 41.351 740 403 16 63 789 57 778 0.0 585
Msa0039490 MtrunA17_Chr2g0331581 41.954 696 350 11 99 789 143 789 0.0 564
Msa0039490 MtrunA17_Chr5g0394111 37.158 732 356 12 68 789 9 646 5.57e-155 466
Msa0039490 MtrunA17_Chr7g0224451 40.755 503 216 14 94 587 15 444 1.35e-113 352
Msa0039490 MtrunA17_Chr2g0292731 32.302 517 322 12 286 789 47 548 1.14e-86 285
Msa0039490 MtrunA17_Chr2g0292741 31.384 513 327 11 286 789 39 535 8.16e-82 271
Msa0039490 MtrunA17_Chr7g0224481 38.817 389 167 10 94 475 15 339 1.75e-77 253
Msa0039490 MtrunA17_Chr7g0224491 46.082 319 139 10 478 789 1 293 7.50e-75 245
Msa0039490 MtrunA17_Chr2g0292761 30.064 622 343 19 176 789 3 540 1.42e-70 241
Msa0039490 MtrunA17_Chr5g0419821 55.118 127 56 1 90 215 28 154 5.11e-42 150
Msa0039490 MtrunA17_Chr2g0319671 31.801 261 133 5 301 526 18 268 1.72e-35 137
Msa0039490 MtrunA17_Chr2g0319681 36.017 236 135 6 559 789 1 225 2.50e-32 125
Msa0039490 MtrunA17_Chr2g0319701 35.146 239 131 8 559 789 1 223 2.92e-30 120
Msa0039490 MtrunA17_Chr1g0205981 32.110 218 110 5 150 359 1 188 7.19e-24 100
Msa0039490 MtrunA17_Chr2g0319691 39.062 128 70 3 414 539 1 122 8.91e-23 95.5
Msa0039490 MtrunA17_Chr7g0224461 45.312 128 46 4 674 790 1 115 1.68e-21 90.5
Msa0039490 MtrunA17_Chr2g0304191 28.244 131 93 1 309 438 1 131 1.43e-15 74.3
Msa0039490 MtrunA17_Chr1g0179581 39.326 89 44 3 91 172 24 109 8.02e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039490 AT4G00730.1 63.108 740 239 9 51 790 94 799 0.0 917
Msa0039490 AT3G61150.1 58.435 818 271 15 1 789 26 803 0.0 906
Msa0039490 AT4G04890.2 51.558 770 331 13 27 789 1 735 0.0 771
Msa0039490 AT4G04890.1 51.558 770 331 13 27 789 1 735 0.0 771
Msa0039490 AT5G52170.3 51.905 761 276 14 40 791 1 680 0.0 748
Msa0039490 AT5G52170.1 51.905 761 276 14 40 791 1 680 0.0 748
Msa0039490 AT5G52170.2 51.567 766 276 15 40 791 1 685 0.0 743
Msa0039490 AT1G05230.8 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.4 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.9 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.10 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.7 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.11 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.2 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.6 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.5 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT1G05230.1 51.351 740 308 12 54 789 25 716 0.0 741
Msa0039490 AT4G21750.2 49.242 792 338 13 27 789 1 757 0.0 734
Msa0039490 AT4G21750.1 49.242 792 338 13 27 789 1 757 0.0 734
Msa0039490 AT4G21750.3 49.242 792 338 13 27 789 1 757 0.0 734
Msa0039490 AT4G21750.4 49.242 792 338 13 27 789 1 757 0.0 734
Msa0039490 AT1G05230.3 51.216 740 307 13 54 789 25 714 0.0 733
Msa0039490 AT1G73360.1 46.273 711 339 14 94 789 31 713 0.0 607
Msa0039490 AT1G05230.12 50.325 616 265 11 54 665 25 603 0.0 606
Msa0039490 AT4G00730.2 60.852 493 166 7 51 543 94 559 0.0 591
Msa0039490 AT1G17920.2 44.587 702 335 14 98 789 24 681 0.0 585
Msa0039490 AT1G17920.1 44.587 702 335 14 98 789 24 681 0.0 585
Msa0039490 AT2G32370.1 40.028 727 377 12 70 786 40 717 0.0 545
Msa0039490 AT1G79840.3 39.860 715 358 15 87 791 34 686 4.08e-177 525
Msa0039490 AT1G79840.6 39.860 715 358 15 87 791 34 686 4.08e-177 525
Msa0039490 AT1G79840.1 39.860 715 358 15 87 791 92 744 9.83e-177 526
Msa0039490 AT1G79840.2 39.860 715 358 15 87 791 121 773 9.50e-176 525
Msa0039490 AT5G46880.3 39.757 742 388 19 79 789 93 806 1.72e-171 515
Msa0039490 AT5G46880.1 39.757 742 388 19 79 789 93 806 1.72e-171 515
Msa0039490 AT5G46880.2 39.757 742 388 19 79 789 93 806 1.72e-171 515
Msa0039490 AT4G25530.1 39.028 720 367 15 76 789 29 682 1.77e-164 493
Msa0039490 AT1G79840.4 40.000 585 285 13 87 661 92 620 7.73e-143 435
Msa0039490 AT3G03260.1 34.060 734 415 17 79 789 7 694 2.17e-136 420
Msa0039490 AT4G17710.1 34.907 699 368 16 95 789 88 703 2.54e-129 402
Msa0039490 AT5G17320.1 34.008 741 439 22 74 790 2 716 2.83e-122 384
Msa0039490 AT1G34650.1 32.642 723 440 16 85 789 12 705 2.50e-113 360
Msa0039490 AT3G03260.2 33.692 558 329 13 79 627 7 532 1.22e-101 324
Msa0039490 AT1G79840.5 38.013 463 223 11 87 540 92 499 1.22e-98 316
Msa0039490 AT5G07260.1 25.841 565 335 16 160 722 9 491 1.05e-48 181
Msa0039490 AT5G07260.2 26.018 565 329 16 160 722 9 486 1.43e-48 181
Msa0039490 AT1G30490.1 37.255 102 55 3 81 178 6 102 4.48e-11 67.0

Find 241 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGTCCGTTGCTTATTTC+TGG 0.113009 1_1:-69123897 Msa0039490:CDS
CCGTTGCTTATTTCTGGTTT+TGG 0.171502 1_1:-69123891 Msa0039490:CDS
GGTGCTCTTCGAACAATATT+TGG 0.196521 1_1:+69125839 None:intergenic
AGATAGTCCTGTTTGGATTA+AGG 0.220607 1_1:-69125470 Msa0039490:CDS
GAAGACTATTCACCAGAATT+TGG 0.222863 1_1:+69122823 None:intergenic
TCATTTGGGTTCGACGATTC+TGG 0.227937 1_1:+69126238 None:intergenic
GTGCTTCATCTGCTAGAAAA+TGG 0.232062 1_1:-69123600 Msa0039490:CDS
TTGCAAGTTGCAACTGTAAA+AGG 0.240154 1_1:+69122378 None:intergenic
TCAGCATTGCATTAACAAAA+TGG 0.246356 1_1:+69122700 None:intergenic
TTTGATCTTGAAGGATTATC+TGG 0.248253 1_1:-69126543 Msa0039490:CDS
ATTTAATCTTCACCTTCATT+TGG 0.253274 1_1:+69126223 None:intergenic
CCACCACAGTTGTTACATAT+TGG 0.279446 1_1:+69125877 None:intergenic
ATGACCAACAACTTCTGTTC+TGG 0.284388 1_1:-69123628 Msa0039490:CDS
GATAGTCCTGTTTGGATTAA+GGG 0.285548 1_1:-69125469 Msa0039490:CDS
AAAATAAACAAGTAAAATTC+TGG 0.292831 1_1:-69126263 Msa0039490:CDS
CAGAACAGACACATATGTTT+TGG 0.300815 1_1:+69122414 None:intergenic
TCCTGTTTGGATTAAGGGTT+TGG 0.303275 1_1:-69125464 Msa0039490:CDS
GGATTAGCCAATGATGATAT+TGG 0.305207 1_1:+69125739 None:intergenic
TTTAATCTTCACCTTCATTT+GGG 0.314861 1_1:+69126224 None:intergenic
GGCAAGTCTTGCAACCTTAC+AGG 0.317335 1_1:+69126870 None:intergenic
CACAGTCGGATTCCAAATTC+TGG 0.317732 1_1:-69122835 Msa0039490:CDS
TATGTTGCACTCTTGCCTTC+AGG 0.326578 1_1:-69122957 Msa0039490:CDS
TCAAGCTCTTGAATTTGATT+AGG 0.330233 1_1:+69126456 None:intergenic
TTGGATTTGGCGCTCATAGA+TGG 0.334166 1_1:-69123872 Msa0039490:CDS
TCTCAATACTGACAAGAAAT+TGG 0.342826 1_1:-69127406 Msa0039490:five_prime_UTR
GCAACAAAGCCAGCAGGTTT+AGG 0.343857 1_1:+69125379 None:intergenic
CGGTTGATTTCTTCTTGTAT+TGG 0.345564 1_1:-69125403 Msa0039490:CDS
GTCACTGTTCTTGCTGTTGT+GGG 0.345979 1_1:-69127330 Msa0039490:five_prime_UTR
AACAGTCTTTGTCGTGAAAC+TGG 0.348067 1_1:+69123460 None:intergenic
CCAAGCCTTCACACTGCCTT+TGG 0.351820 1_1:+69123838 None:intergenic
GCTCTACCATCCTCAAATTC+TGG 0.354909 1_1:-69125712 Msa0039490:CDS
GTTTCCTTGCCCTTGACCTT+TGG 0.362517 1_1:+69123354 None:intergenic
GGTTATACATTTGGTTGTAT+AGG 0.370890 1_1:-69122616 Msa0039490:three_prime_UTR
TGAGAAAGGGGTTATACATT+TGG 0.376965 1_1:-69122625 Msa0039490:three_prime_UTR
ATGAATGGTTGTGCATTAGA+AGG 0.380812 1_1:+69124798 None:intergenic
TCTGGTCTGGAACTTGGTAT+TGG 0.381053 1_1:-69125694 Msa0039490:CDS
ACGATACCGGGAGGCTCGCC+AGG 0.388787 1_1:+69123511 None:intergenic
CTTGGCAATCCTTTGCCAAT+GGG 0.389267 1_1:-69125640 Msa0039490:CDS
TAGTTCACCAATGGGATTGA+TGG 0.393674 1_1:-69125581 Msa0039490:CDS
TCTTAGCAAGAGACTTGGTT+TGG 0.395711 1_1:-69126286 Msa0039490:CDS
AATATTTGGCCAGGAATTGC+TGG 0.396823 1_1:+69125853 None:intergenic
AGCAGCATGCAGAAGGTGTA+TGG 0.397562 1_1:-69124857 Msa0039490:CDS
GGTATTGGAAGGAACGGTTT+TGG 0.397790 1_1:-69125679 Msa0039490:CDS
TTCAATGATTGCCCGTCAAC+TGG 0.404111 1_1:+69123008 None:intergenic
TGTTTGTTAAGGCACATATA+CGG 0.406272 1_1:+69125776 None:intergenic
GCCAAGGAACTTGTTTGTTA+AGG 0.406883 1_1:+69125765 None:intergenic
GCTGAAGCTACGAGAGAAAC+CGG 0.410030 1_1:-69125358 Msa0039490:CDS
AACTGACTCCATTGTGAGCT+TGG 0.411048 1_1:+69122794 None:intergenic
TGACCAACAACTTCTGTTCT+GGG 0.413733 1_1:-69123627 Msa0039490:CDS
AGATCTTGCATTGGCTGCTA+TGG 0.415072 1_1:-69125518 Msa0039490:CDS
TGTGGTGGACCAGCAATTCC+TGG 0.416505 1_1:-69125862 Msa0039490:CDS
CTCAGACAGATAGTCCTGTT+TGG 0.418832 1_1:-69125477 Msa0039490:CDS
AAGAAATGGTGCTATACATT+TGG 0.420804 1_1:-69125031 Msa0039490:intron
GGTGGTGGTTCAAGCTCCCT+TGG 0.421206 1_1:-69125658 Msa0039490:CDS
TTTGTTGAATCAGACTCAAC+TGG 0.422317 1_1:-69125983 Msa0039490:intron
AGGATTCTCACTTGACGAAC+CGG 0.422609 1_1:+69124891 None:intergenic
TGTATTGGTCCTAAACCTGC+TGG 0.422932 1_1:-69125388 Msa0039490:CDS
CTTACCTTGGAGTAACCATT+TGG 0.423156 1_1:+69124732 None:intergenic
GTTGATGTTTCTGTTGAGAT+TGG 0.423253 1_1:-69124828 Msa0039490:CDS
AGCGATAACTTTGATCTTGA+AGG 0.423316 1_1:-69126552 Msa0039490:CDS
AGCCTTCACACTGCCTTTGG+AGG 0.424623 1_1:+69123841 None:intergenic
CATCACTCAGAGTCCCCATT+TGG 0.425038 1_1:+69123569 None:intergenic
TTACAGTTGCAACTTGCAAA+TGG 0.427475 1_1:-69122374 Msa0039490:three_prime_UTR
CCTTGGCAATCCTTTGCCAA+TGG 0.431338 1_1:-69125641 Msa0039490:CDS
ATACATTTGGTTGTATAGGA+AGG 0.432041 1_1:-69122612 Msa0039490:three_prime_UTR
TGTATAGGAAGGGTTGCTTA+AGG 0.433860 1_1:-69122601 Msa0039490:three_prime_UTR
TGCTTCATCTGCTAGAAAAT+GGG 0.434105 1_1:-69123599 Msa0039490:CDS
AAAGTGATAGTGACGATTGC+TGG 0.435596 1_1:-69127027 Msa0039490:five_prime_UTR
TCCTTCTGGCTGTATTGTGC+AGG 0.438832 1_1:-69124760 Msa0039490:CDS
TTAGCGCTGCAACATCTGTT+TGG 0.439034 1_1:-69123486 Msa0039490:CDS
TCAAATTCTGGTCTGGAACT+TGG 0.441450 1_1:-69125700 Msa0039490:CDS
AGCTTAGATACTAGTCTGCT+TGG 0.446257 1_1:-69126612 Msa0039490:CDS
ATGGAGGGGCAGAGTGAGAT+TGG 0.448707 1_1:-69126648 Msa0039490:CDS
AATTGAAAACGCCCGTCTAA+AGG 0.449088 1_1:-69125809 Msa0039490:CDS
TACAGTTGCAACTTGCAAAT+GGG 0.450924 1_1:-69122373 Msa0039490:three_prime_UTR
TGTCACTGTTCTTGCTGTTG+TGG 0.451766 1_1:-69127331 Msa0039490:five_prime_UTR
AAGATCAAAGTTATCGCTTC+CGG 0.452078 1_1:+69126557 None:intergenic
AGCACTTGTGGAAACTTTGA+TGG 0.452399 1_1:-69125314 Msa0039490:CDS
ACCATCCTCAAATTCTGGTC+TGG 0.453392 1_1:-69125707 Msa0039490:CDS
GTTCAATTCGTCCTTTAGAC+GGG 0.453733 1_1:+69125798 None:intergenic
AAAATGGGACAGCCTCCAAA+TGG 0.457660 1_1:-69123584 Msa0039490:CDS
GAAGCATGTGTGAACCTTGT+TGG 0.458837 1_1:-69127296 Msa0039490:five_prime_UTR
GGTGGTGCTGGCGATGGTGG+TGG 0.459096 1_1:-69122867 Msa0039490:CDS
ACATGCTTCTTCTACCAGCT+TGG 0.460496 1_1:+69123668 None:intergenic
TCCAAACCCTTAATCCAAAC+AGG 0.460668 1_1:+69125463 None:intergenic
CAAAGTTATCGCTTCCGGAC+CGG 0.465356 1_1:+69126562 None:intergenic
TGGCAAACCAATATCATCAT+TGG 0.472028 1_1:-69125746 Msa0039490:CDS
TGTTGATTCTGCAAGAAACT+TGG 0.473065 1_1:-69123064 Msa0039490:CDS
AATCAACAGTTTAGCACTTG+TGG 0.473233 1_1:-69125326 Msa0039490:CDS
GGCTTTGCAATTGTTCCTGA+TGG 0.475420 1_1:-69122936 Msa0039490:CDS
TTGCCAATGGGACTTGATCT+CGG 0.479358 1_1:-69125628 Msa0039490:CDS
GCCTTAACAAACAAGTTCCT+TGG 0.480879 1_1:-69125766 Msa0039490:CDS
TGCAGCGCTAAGCACGATAC+CGG 0.481258 1_1:+69123498 None:intergenic
AGCAAGAACAGTGACACATA+AGG 0.481995 1_1:+69127338 None:intergenic
GCCTTCACACTGCCTTTGGA+GGG 0.482232 1_1:+69123842 None:intergenic
AAGTTCCAGACCAGAATTTG+AGG 0.483874 1_1:+69125702 None:intergenic
GCAAGAACAGTGACACATAA+GGG 0.484327 1_1:+69127339 None:intergenic
TCTGGCTACGGCATGTCAAA+TGG 0.484409 1_1:-69122903 Msa0039490:CDS
GATGACCCTGGCGAGCCTCC+CGG 0.485077 1_1:-69123517 Msa0039490:CDS
AGGAAAATGACAAGCTAAGA+GGG 0.487415 1_1:-69125933 Msa0039490:CDS
GTGGTGTATGCACCAGTTGA+CGG 0.489013 1_1:-69123020 Msa0039490:CDS
AAATGGGACAGCCTCCAAAT+GGG 0.490793 1_1:-69123583 Msa0039490:CDS
GGTTCAATTCGTCCTTTAGA+CGG 0.491156 1_1:+69125797 None:intergenic
AGGATTATCTGGTGATGATC+AGG 0.493656 1_1:-69126532 Msa0039490:CDS
AGGTCACTTGGATTGAGCAC+TGG 0.495140 1_1:-69123950 Msa0039490:CDS
AGCTGTAGAAGACTTCCTTC+TGG 0.496424 1_1:-69124774 Msa0039490:CDS
TTGCATTGTTGTAGGTCACT+TGG 0.496497 1_1:-69123962 Msa0039490:intron
GTTTGGATTAAGGGTTTGGA+TGG 0.496569 1_1:-69125460 Msa0039490:CDS
ACTGTTGATTATTACTATCC+CGG 0.497411 1_1:+69125339 None:intergenic
CCTGGTATTAGTTCACCAAT+GGG 0.499291 1_1:-69125589 Msa0039490:CDS
CCAAAGGCAGTGTGAAGGCT+TGG 0.499979 1_1:-69123838 Msa0039490:CDS
GGATTCTCACTTGACGAACC+GGG 0.501488 1_1:+69124892 None:intergenic
GATGAGTATGAAAGCCGGTC+CGG 0.502821 1_1:-69126576 Msa0039490:CDS
TAGGAAGGGTTGCTTAAGGA+AGG 0.502861 1_1:-69122597 Msa0039490:three_prime_UTR
CCCATTGGTGAACTAATACC+AGG 0.505164 1_1:+69125589 None:intergenic
CACTCAGAGTCCCCATTTGG+AGG 0.506413 1_1:+69123572 None:intergenic
TGATGTTCAGCTTGAGAGAT+CGG 0.507347 1_1:-69125548 Msa0039490:CDS
ATATTGAATCAAGAAGAGTA+TGG 0.509859 1_1:-69125427 Msa0039490:CDS
TTCACACTGCCTTTGGAGGG+TGG 0.511667 1_1:+69123845 None:intergenic
CAGAGTGAGATTGGTCTCAC+TGG 0.512660 1_1:-69126639 Msa0039490:CDS
AGTCTTCTACAGCTTATGAA+TGG 0.512664 1_1:+69124783 None:intergenic
GGTAATGATCCCTCTGGCTA+CGG 0.514599 1_1:-69122915 Msa0039490:CDS
TTCGTCAAGTGAGAATCCTT+CGG 0.514988 1_1:-69124887 Msa0039490:CDS
TATGGATGAATTATTAAAGA+TGG 0.515193 1_1:-69125500 Msa0039490:CDS
TACATTTGGTTGTATAGGAA+GGG 0.515297 1_1:-69122611 Msa0039490:three_prime_UTR
TGAGAACATAATGCTTAGGC+AGG 0.515881 1_1:-69125953 Msa0039490:CDS
GCTTAGATACTAGTCTGCTT+GGG 0.516578 1_1:-69126611 Msa0039490:CDS
ATTGCTTTCACCACTAGTCC+CGG 0.516885 1_1:-69124910 Msa0039490:CDS
AGTTCACCAATGGGATTGAT+GGG 0.519574 1_1:-69125580 Msa0039490:CDS
TAGAAGAAGCATGTTGAAGC+TGG 0.521232 1_1:-69123659 Msa0039490:CDS
TCTTCGAACAATATTTGGCC+AGG 0.521570 1_1:+69125844 None:intergenic
GGAGATGGTCGCTCAATGCC+TGG 0.523620 1_1:-69125607 Msa0039490:CDS
GCCTGGTATTAGTTCACCAA+TGG 0.525635 1_1:-69125590 Msa0039490:CDS
AAAGGTGGTGCTGGCGATGG+TGG 0.526742 1_1:-69122870 Msa0039490:CDS
GGTCACTTGGATTGAGCACT+GGG 0.528082 1_1:-69123949 Msa0039490:CDS
TGCAGCTTTGATCTTCTGAA+TGG 0.531714 1_1:+69122743 None:intergenic
ACAGTTGAGAAGAAAGAAGA+TGG 0.534260 1_1:+69126808 None:intergenic
GTTCACATTGCCAAAGGTCA+AGG 0.536772 1_1:-69123364 Msa0039490:CDS
GGATACATCTTGCTCGGTGG+TGG 0.536827 1_1:-69123039 Msa0039490:CDS
TTTGCAGCATTGAGCCAAGC+TGG 0.536871 1_1:-69123682 Msa0039490:intron
TGAGTACATAAGAGTCAGAA+TGG 0.536981 1_1:-69126987 Msa0039490:five_prime_UTR
GAGTGTGAACAGTTCCTGTA+AGG 0.537925 1_1:-69126884 Msa0039490:CDS
GGAATCGGTGGAACAAGAAA+TGG 0.540658 1_1:-69125045 Msa0039490:CDS
CAGGAAAATGACAAGCTAAG+AGG 0.541163 1_1:-69125934 Msa0039490:CDS
TACATAAGAGTCAGAATGGA+AGG 0.542507 1_1:-69126983 Msa0039490:five_prime_UTR
ATGAAAGGCTTAGAAGCGAG+TGG 0.543168 1_1:-69123423 Msa0039490:CDS
CCAGAGGGATCATTACCATC+AGG 0.544598 1_1:+69122921 None:intergenic
AACCCCAGAACAGAAGTTGT+TGG 0.545437 1_1:+69123624 None:intergenic
GAATCGTCGAACCCAAATGA+AGG 0.545567 1_1:-69126235 Msa0039490:intron
GGTGGAAGTTTGCTCACAGT+CGG 0.546541 1_1:-69122849 Msa0039490:CDS
TTCTGTAAGCAGCATGCAGA+AGG 0.546904 1_1:-69124864 Msa0039490:CDS
GGCTCTAATAGATCTTGCAT+TGG 0.550601 1_1:-69125527 Msa0039490:CDS
TTTGAGGATGGTAGAGCCAT+GGG 0.555597 1_1:+69125718 None:intergenic
GTGATGATGGTCAGCGCAAG+AGG 0.555699 1_1:-69126503 Msa0039490:CDS
ATCATCATTGGCTAATCCCA+TGG 0.556384 1_1:-69125734 Msa0039490:CDS
GATCAGGATGGTGGTGATGA+TGG 0.558173 1_1:-69126516 Msa0039490:CDS
AATGTGAACCATCTCTTGCA+TGG 0.559591 1_1:+69123378 None:intergenic
TCAAATGGTACTTTACAGAA+AGG 0.561442 1_1:-69122888 Msa0039490:CDS
CCTGATGGTAATGATCCCTC+TGG 0.562249 1_1:-69122921 Msa0039490:CDS
TGGTGTATGCACCAGTTGAC+GGG 0.562286 1_1:-69123019 Msa0039490:CDS
ATGGGACTTGATCTCGGAGA+TGG 0.563438 1_1:-69125622 Msa0039490:CDS
GTCTGGAACTTGGTATTGGA+AGG 0.563807 1_1:-69125690 Msa0039490:CDS
GGCATGAGAACATAATGCTT+AGG 0.566863 1_1:-69125957 Msa0039490:CDS
CAGAAAGGTGGTGCTGGCGA+TGG 0.567714 1_1:-69122873 Msa0039490:CDS
ATGTGAACCATCTCTTGCAT+GGG 0.567812 1_1:+69123379 None:intergenic
GCTTCAGCAACAAAGCCAGC+AGG 0.568459 1_1:+69125373 None:intergenic
TCCATTGTGAGCTTGGCAGT+TGG 0.569368 1_1:+69122801 None:intergenic
CGTGTGATCATCGTTTGAGA+TGG 0.569576 1_1:+69123797 None:intergenic
TTGGATCTTAGCAAGAGACT+TGG 0.569590 1_1:-69126291 Msa0039490:CDS
ACCAGATAAAACATCAAGGT+TGG 0.570465 1_1:+69125068 None:intergenic
ATTTGAGGATGGTAGAGCCA+TGG 0.573157 1_1:+69125717 None:intergenic
CTACTTCCCATCAATCCCAT+TGG 0.573723 1_1:+69125574 None:intergenic
ACTTTACAGAAAGGTGGTGC+TGG 0.574608 1_1:-69122879 Msa0039490:CDS
ACCCTCCAAAGGCAGTGTGA+AGG 0.587970 1_1:-69123843 Msa0039490:CDS
TTGGATGGATACATCTTGCT+CGG 0.589147 1_1:-69123045 Msa0039490:CDS
CCAATATGTAACAACTGTGG+TGG 0.591280 1_1:-69125877 Msa0039490:CDS
CATCTCAAACGATGATCACA+CGG 0.591971 1_1:-69123796 Msa0039490:CDS
TGGTGGACCCATGCAAGAGA+TGG 0.592249 1_1:-69123386 Msa0039490:CDS
GATTCTGCAAGAAACTTGGA+TGG 0.592935 1_1:-69123060 Msa0039490:CDS
GACCAACAACTTCTGTTCTG+GGG 0.596269 1_1:-69123626 Msa0039490:CDS
GCAGCATGCAGAAGGTGTAT+GGG 0.596526 1_1:-69124856 Msa0039490:CDS
GGAACTCGTGGCGTTGCTGA+TGG 0.596588 1_1:-69122545 Msa0039490:three_prime_UTR
GAACTTGGTATTGGAAGGAA+CGG 0.597234 1_1:-69125685 Msa0039490:CDS
GATGGATCGCCACCCTCCAA+AGG 0.597522 1_1:-69123854 Msa0039490:CDS
GGAACAATTGCAAAGCCTGA+AGG 0.597670 1_1:+69122942 None:intergenic
TCCAGACCAGAATTTGAGGA+TGG 0.597964 1_1:+69125706 None:intergenic
GCAGCGCTAAGCACGATACC+GGG 0.598314 1_1:+69123499 None:intergenic
ACTTGACGAACCGGGACTAG+TGG 0.600610 1_1:+69124900 None:intergenic
AGATCAAGTCCCATTGGCAA+AGG 0.604435 1_1:+69125631 None:intergenic
TCTCCGAGATCAAGTCCCAT+TGG 0.604534 1_1:+69125625 None:intergenic
TAGCATGATGAAAGAAGCAA+TGG 0.604769 1_1:-69125905 Msa0039490:CDS
TGCAGAAGGTGTATGGGCCG+TGG 0.605614 1_1:-69124850 Msa0039490:CDS
GAATGCAAAGACTAACTCGC+AGG 0.606002 1_1:+69122449 None:intergenic
TTGTTTGTGGGGTGTTGACA+AGG 0.608143 1_1:-69127175 Msa0039490:five_prime_UTR
TTGAATGTGGTGATGAGTGG+TGG 0.609782 1_1:-69122990 Msa0039490:CDS
ATGATGATATTGGTTTGCCA+AGG 0.610133 1_1:+69125749 None:intergenic
CATGCTGCTTACAGAACCGA+AGG 0.611995 1_1:+69124871 None:intergenic
CTGAAGCTACGAGAGAAACC+GGG 0.615105 1_1:-69125357 Msa0039490:CDS
ATCATCGTTTGAGATGGAAG+AGG 0.615317 1_1:+69123803 None:intergenic
TAAGCAACGGACGATAGAGT+TGG 0.616243 1_1:+69123904 None:intergenic
TCTTCCTTTCTGATCCAACA+AGG 0.616341 1_1:+69127282 None:intergenic
TGTGGAAACTTTGATGGATG+CGG 0.616357 1_1:-69125308 Msa0039490:intron
TCCAACTGCCAAGCTCACAA+TGG 0.619453 1_1:-69122802 Msa0039490:CDS
TGAATCAGACTCAACTGGAA+AGG 0.621264 1_1:-69125978 Msa0039490:intron
GAGAGGATGAGTATGAAAGC+CGG 0.622277 1_1:-69126581 Msa0039490:CDS
TTCACATTGCCAAAGGTCAA+GGG 0.624942 1_1:-69123363 Msa0039490:CDS
ATGACATGAGAGTTATGACT+AGG 0.627138 1_1:-69123549 Msa0039490:CDS
TATGCCAAATGGTTACTCCA+AGG 0.627451 1_1:-69124736 Msa0039490:intron
ATTTGACATGCCGTAGCCAG+AGG 0.627533 1_1:+69122905 None:intergenic
TTCCACCAGATAAAACATCA+AGG 0.627792 1_1:+69125064 None:intergenic
ATTGCCAAAGGTCAAGGGCA+AGG 0.631892 1_1:-69123358 Msa0039490:CDS
TGAATCAAGAAGAGTATGGA+CGG 0.632793 1_1:-69125423 Msa0039490:CDS
GCAATTTCAGATGCATACTG+AGG 0.637345 1_1:-69124937 Msa0039490:intron
TTTGATTAGGAGTGTGTCTG+TGG 0.637619 1_1:+69126469 None:intergenic
TTTGACATGCCGTAGCCAGA+GGG 0.639169 1_1:+69122906 None:intergenic
TGAAAGGCTTAGAAGCGAGT+GGG 0.641966 1_1:-69123422 Msa0039490:CDS
ATTGTGCAGGATATGCCAAA+TGG 0.645079 1_1:-69124747 Msa0039490:CDS
AATGGGACAGCCTCCAAATG+GGG 0.646605 1_1:-69123582 Msa0039490:CDS
AATGGTACTTTACAGAAAGG+TGG 0.653820 1_1:-69122885 Msa0039490:CDS
TTGAGATGGAAGAGGACATG+AGG 0.654253 1_1:+69123811 None:intergenic
GAGATGGTTCACATTGCCAA+AGG 0.654763 1_1:-69123370 Msa0039490:CDS
TCCTGCACAATACAGCCAGA+AGG 0.655286 1_1:+69124759 None:intergenic
CGATACCGGGAGGCTCGCCA+GGG 0.655976 1_1:+69123512 None:intergenic
CTCAACAGAAACATCAACCA+CGG 0.657444 1_1:+69124833 None:intergenic
TGAACCTTGTTGGATCAGAA+AGG 0.657649 1_1:-69127286 Msa0039490:five_prime_UTR
TCTGCTTGGGAGAATGAGAG+AGG 0.661619 1_1:-69126598 Msa0039490:CDS
TCATTGAATGTGGTGATGAG+TGG 0.663206 1_1:-69122993 Msa0039490:CDS
AAAGGGTATAGAAATATCAG+TGG 0.663426 1_1:+69126849 None:intergenic
CCATTGGCAAAGGATTGCCA+AGG 0.666378 1_1:+69125641 None:intergenic
GCGCTAAGCACGATACCGGG+AGG 0.668252 1_1:+69123502 None:intergenic
AAGTTGCAACTGTAAAAGGA+CGG 0.668481 1_1:+69122382 None:intergenic
CCAAAACCAGAAATAAGCAA+CGG 0.679772 1_1:+69123891 None:intergenic
GATGGATACATCTTGCTCGG+TGG 0.691053 1_1:-69123042 Msa0039490:CDS
CATTGGCAAAGGATTGCCAA+GGG 0.693173 1_1:+69125642 None:intergenic
ATCTCAAACGATGATCACAC+GGG 0.701632 1_1:-69123795 Msa0039490:intron
GGAAAATGACAAGCTAAGAG+GGG 0.705532 1_1:-69125932 Msa0039490:CDS
TAAAACTTACATTAGCACGA+AGG 0.708878 1_1:+69123320 None:intergenic
TGACGGGCAATCATTGAATG+TGG 0.709763 1_1:-69123003 Msa0039490:CDS
TCTGGTGATGATCAGGATGG+TGG 0.726600 1_1:-69126525 Msa0039490:CDS
TTATCTGGTGATGATCAGGA+TGG 0.778846 1_1:-69126528 Msa0039490:CDS
AATCCAATATGTAACAACTG+TGG 0.783609 1_1:-69125880 Msa0039490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAATCTTTATTGTTTT+TGG - chr1_1:69123059-69123078 Msa0039490:CDS 10.0%
!! AATAACAAAAAGAAATAAAA+TGG + chr1_1:69123409-69123428 None:intergenic 10.0%
!!! TAATCTTATATCTTGTTTTA+TGG - chr1_1:69123035-69123054 Msa0039490:CDS 15.0%
!!! TTTTTGTTATTAAACTAATG+TGG - chr1_1:69123418-69123437 Msa0039490:CDS 15.0%
!! AAAATAAACAAGTAAAATTC+TGG - chr1_1:69123552-69123571 Msa0039490:CDS 15.0%
!!! TTTTAAAAGAAAATGAAACA+TGG + chr1_1:69123619-69123638 None:intergenic 15.0%
!!! AAACAAATATTTTATACTAC+AGG + chr1_1:69125483-69125502 None:intergenic 15.0%
!! GAATGCTATATAAAATATAA+TGG - chr1_1:69125550-69125569 Msa0039490:CDS 15.0%
!! ATCTGTCTAATTATATTAAA+AGG + chr1_1:69125600-69125619 None:intergenic 15.0%
!!! TATTAATTTATAATTAGCCT+AGG - chr1_1:69125750-69125769 Msa0039490:CDS 15.0%
!!! ATTAATTTATAATTAGCCTA+GGG - chr1_1:69125751-69125770 Msa0039490:CDS 15.0%
!!! GTTTTATTAATTTTTTGAAC+TGG - chr1_1:69127167-69127186 Msa0039490:five_prime_UTR 15.0%
!!! AAAAAGTCTTGTTTTTCTTA+TGG - chr1_1:69122901-69122920 Msa0039490:CDS 20.0%
!!! AAAAGTCTTGTTTTTCTTAT+GGG - chr1_1:69122902-69122921 Msa0039490:CDS 20.0%
!! TTTCATGATCTTTGATATTA+TGG + chr1_1:69123727-69123746 None:intergenic 20.0%
!! TATGGATGAATTATTAAAGA+TGG - chr1_1:69124315-69124334 Msa0039490:intron 20.0%
!! ACAAAATTTCCTATCAAAAT+CGG + chr1_1:69124578-69124597 None:intergenic 20.0%
!!! ATACTTTTCTTGAATAGAAT+CGG - chr1_1:69124687-69124706 Msa0039490:intron 20.0%
!! TGCTATATCTAAATAGAATA+AGG - chr1_1:69125189-69125208 Msa0039490:intron 20.0%
!! AATAGAATAAGGTTGAAATA+AGG - chr1_1:69125200-69125219 Msa0039490:intron 20.0%
!!! AGTTTTTTTACTTGTTTACT+TGG - chr1_1:69125255-69125274 Msa0039490:intron 20.0%
!!! GTTTTTTTACTTGTTTACTT+GGG - chr1_1:69125256-69125275 Msa0039490:intron 20.0%
!!! TGCATGAAAATTTTAAATCT+TGG - chr1_1:69125404-69125423 Msa0039490:CDS 20.0%
!! CTTGTTAACTACTAATTAAA+TGG - chr1_1:69126090-69126109 Msa0039490:intron 20.0%
!! CTAATTAAATGGTGTAAATT+TGG - chr1_1:69126101-69126120 Msa0039490:intron 20.0%
!! TTTTTGGATTTTCTCTTTCA+GGG - chr1_1:69122373-69122392 Msa0039490:three_prime_UTR 25.0%
!!! AAGATAAAAAGTCTTGTTTG+TGG - chr1_1:69122627-69122646 Msa0039490:three_prime_UTR 25.0%
!!! AGATAAAAAGTCTTGTTTGT+GGG - chr1_1:69122628-69122647 Msa0039490:three_prime_UTR 25.0%
!! ATTCAATCTTTGTCAGTTTT+TGG - chr1_1:69122703-69122722 Msa0039490:three_prime_UTR 25.0%
! TCAAAAACTGAAAAGTTCAT+TGG - chr1_1:69122763-69122782 Msa0039490:CDS 25.0%
!!! AAAGTCTTGTTTTTCTTATG+GGG - chr1_1:69122903-69122922 Msa0039490:CDS 25.0%
!! TTTTGCATTGAACTAGAAAA+GGG + chr1_1:69122986-69123005 None:intergenic 25.0%
!! ATTTTGCATTGAACTAGAAA+AGG + chr1_1:69122987-69123006 None:intergenic 25.0%
!! TTTTCTACAGCAAAGAAAAA+TGG - chr1_1:69123148-69123167 Msa0039490:intron 25.0%
!! GATGTGTTTTCTTCTTTTAA+TGG - chr1_1:69123451-69123470 Msa0039490:CDS 25.0%
! TTTAATCTTCACCTTCATTT+GGG + chr1_1:69123594-69123613 None:intergenic 25.0%
! ATTTAATCTTCACCTTCATT+TGG + chr1_1:69123595-69123614 None:intergenic 25.0%
! ATATTGAATCAAGAAGAGTA+TGG - chr1_1:69124388-69124407 Msa0039490:intron 25.0%
!!! GTAATTTAACCGATTTTGAT+AGG - chr1_1:69124566-69124585 Msa0039490:intron 25.0%
! TGAAACTTCATATATCTGTT+TGG - chr1_1:69125361-69125380 Msa0039490:CDS 25.0%
! CGTATGTAAGATGTTTATAT+AGG + chr1_1:69125729-69125748 None:intergenic 25.0%
! AAAATAAGTTGCATTGTTGT+AGG - chr1_1:69125845-69125864 Msa0039490:CDS 25.0%
!! ACGTATGATTTGGATTTAAA+TGG + chr1_1:69126526-69126545 None:intergenic 25.0%
! GCTATAGAGATTTCATAAAT+AGG - chr1_1:69126548-69126567 Msa0039490:CDS 25.0%
! AAAAACAAGTTCACAAAACA+AGG + chr1_1:69127145-69127164 None:intergenic 25.0%
!!! TGTTTTGTGAACTTGTTTTT+TGG - chr1_1:69127145-69127164 Msa0039490:five_prime_UTR 25.0%
GAAAATCCAAAAACATTGCA+TGG + chr1_1:69122366-69122385 None:intergenic 30.0%
!! GTTTTTGGATTTTCTCTTTC+AGG - chr1_1:69122372-69122391 Msa0039490:three_prime_UTR 30.0%
TCTCAATACTGACAAGAAAT+TGG - chr1_1:69122409-69122428 Msa0039490:three_prime_UTR 30.0%
CCAGAAAAAACAGATGAAAA+AGG + chr1_1:69122583-69122602 None:intergenic 30.0%
!!! CCTTTTTCATCTGTTTTTTC+TGG - chr1_1:69122580-69122599 Msa0039490:three_prime_UTR 30.0%
!!! TCATCTGTTTTTTCTGGATT+AGG - chr1_1:69122586-69122605 Msa0039490:three_prime_UTR 30.0%
!! GATAAAAAGTCTTGTTTGTG+GGG - chr1_1:69122629-69122648 Msa0039490:three_prime_UTR 30.0%
AATCTGAGTCAAAAAGTCAA+AGG - chr1_1:69122729-69122748 Msa0039490:CDS 30.0%
ATCTGAGTCAAAAAGTCAAA+GGG - chr1_1:69122730-69122749 Msa0039490:CDS 30.0%
! ATTCTTCTCAGACAAGTTTT+AGG - chr1_1:69122871-69122890 Msa0039490:CDS 30.0%
! AAAGGGTATAGAAATATCAG+TGG + chr1_1:69122969-69122988 None:intergenic 30.0%
!! TTGGATTTGATTTTGCATGT+TGG - chr1_1:69123078-69123097 Msa0039490:CDS 30.0%
TTTGATCTTGAAGGATTATC+TGG - chr1_1:69123272-69123291 Msa0039490:intron 30.0%
TCAAGCTCTTGAATTTGATT+AGG + chr1_1:69123362-69123381 None:intergenic 30.0%
! ATTAAACTAATGTGGTTCTG+TGG - chr1_1:69123426-69123445 Msa0039490:CDS 30.0%
!!! GGTTTTTTGTAGTTTCTTCA+AGG - chr1_1:69123472-69123491 Msa0039490:CDS 30.0%
! TTTTTAATGTCTTCGCAACA+AGG - chr1_1:69123672-69123691 Msa0039490:CDS 30.0%
AATCCAATATGTAACAACTG+TGG - chr1_1:69123935-69123954 Msa0039490:CDS 30.0%
! TGTTTGTTAAGGCACATATA+CGG + chr1_1:69124042-69124061 None:intergenic 30.0%
! ACTGTTGATTATTACTATCC+CGG + chr1_1:69124479-69124498 None:intergenic 30.0%
TTATCAAATACTCAACCTCT+TGG - chr1_1:69124535-69124554 Msa0039490:intron 30.0%
AAATTACAAAGAAGACCAAG+AGG + chr1_1:69124553-69124572 None:intergenic 30.0%
CTATATCACTCAGAAAATGT+TGG + chr1_1:69124603-69124622 None:intergenic 30.0%
!! AAGAAATGGTGCTATACATT+TGG - chr1_1:69124784-69124803 Msa0039490:CDS 30.0%
! TACCAAAAAACTGATTTCTC+AGG + chr1_1:69125236-69125255 None:intergenic 30.0%
AAATTGATACAGATGTCAGA+AGG + chr1_1:69125690-69125709 None:intergenic 30.0%
TATAATTGCAACGAGTATGT+TGG - chr1_1:69125812-69125831 Msa0039490:CDS 30.0%
!!! CTTATTTCTGGTTTTGGATT+TGG - chr1_1:69125930-69125949 Msa0039490:CDS 30.0%
TAAAACTTACATTAGCACGA+AGG + chr1_1:69126498-69126517 None:intergenic 30.0%
TCTATAGCTAACGTATGATT+TGG + chr1_1:69126536-69126555 None:intergenic 30.0%
TCTCATAAAACCAACTTACA+AGG + chr1_1:69126597-69126616 None:intergenic 30.0%
!!! TGGTTTTATGAGATTGAGTT+AGG - chr1_1:69126604-69126623 Msa0039490:CDS 30.0%
TTATGAGATTGAGTTAGGAT+CGG - chr1_1:69126609-69126628 Msa0039490:CDS 30.0%
TCAAATGGTACTTTACAGAA+AGG - chr1_1:69126927-69126946 Msa0039490:five_prime_UTR 30.0%
TCAGCATTGCATTAACAAAA+TGG + chr1_1:69127118-69127137 None:intergenic 30.0%
!!! ATTTTTTGAACTGGTGAGAA+AGG - chr1_1:69127176-69127195 Msa0039490:five_prime_UTR 30.0%
!!! TTTTTTGAACTGGTGAGAAA+GGG - chr1_1:69127177-69127196 Msa0039490:five_prime_UTR 30.0%
GGTTATACATTTGGTTGTAT+AGG - chr1_1:69127199-69127218 Msa0039490:five_prime_UTR 30.0%
ATACATTTGGTTGTATAGGA+AGG - chr1_1:69127203-69127222 Msa0039490:five_prime_UTR 30.0%
TACATTTGGTTGTATAGGAA+GGG - chr1_1:69127204-69127223 Msa0039490:five_prime_UTR 30.0%
!! GCAAACAAGTTTTCTAGTAA+TGG - chr1_1:69127320-69127339 Msa0039490:five_prime_UTR 30.0%
!! AACAAGTTTTCTAGTAATGG+TGG - chr1_1:69127323-69127342 Msa0039490:five_prime_UTR 30.0%
! TCTCTTCCATGCAATGTTTT+TGG - chr1_1:69122357-69122376 Msa0039490:three_prime_UTR 35.0%
CAGATGAAAAAGGTTACAAC+AGG + chr1_1:69122573-69122592 None:intergenic 35.0%
TGAGTACATAAGAGTCAGAA+TGG - chr1_1:69122828-69122847 Msa0039490:CDS 35.0%
TACATAAGAGTCAGAATGGA+AGG - chr1_1:69122832-69122851 Msa0039490:CDS 35.0%
ACAGTTGAGAAGAAAGAAGA+TGG + chr1_1:69123010-69123029 None:intergenic 35.0%
TCTACAGCAAAGAAAAATGG+AGG - chr1_1:69123151-69123170 Msa0039490:intron 35.0%
CTACAGCAAAGAAAAATGGA+GGG - chr1_1:69123152-69123171 Msa0039490:intron 35.0%
TACAGCAAAGAAAAATGGAG+GGG - chr1_1:69123153-69123172 Msa0039490:intron 35.0%
AAGATCAAAGTTATCGCTTC+CGG + chr1_1:69123261-69123280 None:intergenic 35.0%
AGCGATAACTTTGATCTTGA+AGG - chr1_1:69123263-69123282 Msa0039490:intron 35.0%
!!! CTTTGTTTTTCATCAGGATG+AGG + chr1_1:69123503-69123522 None:intergenic 35.0%
CTCATCCTGATGAAAAACAA+AGG - chr1_1:69123501-69123520 Msa0039490:CDS 35.0%
TCCTGATGAAAAACAAAGGT+TGG - chr1_1:69123505-69123524 Msa0039490:CDS 35.0%
!!! TCCAACCTTTGTTTTTCATC+AGG + chr1_1:69123509-69123528 None:intergenic 35.0%
TGGAGAATCACAAACAAATG+CGG + chr1_1:69123707-69123726 None:intergenic 35.0%
TTTGTTGAATCAGACTCAAC+TGG - chr1_1:69123832-69123851 Msa0039490:CDS 35.0%
AGGAAAATGACAAGCTAAGA+GGG - chr1_1:69123882-69123901 Msa0039490:CDS 35.0%
TAGCATGATGAAAGAAGCAA+TGG - chr1_1:69123910-69123929 Msa0039490:CDS 35.0%
!! ATGATGATATTGGTTTGCCA+AGG + chr1_1:69124069-69124088 None:intergenic 35.0%
TGGCAAACCAATATCATCAT+TGG - chr1_1:69124069-69124088 Msa0039490:intron 35.0%
!! GGATTAGCCAATGATGATAT+TGG + chr1_1:69124079-69124098 None:intergenic 35.0%
AGATAGTCCTGTTTGGATTA+AGG - chr1_1:69124345-69124364 Msa0039490:intron 35.0%
GATAGTCCTGTTTGGATTAA+GGG - chr1_1:69124346-69124365 Msa0039490:intron 35.0%
! TGAATCAAGAAGAGTATGGA+CGG - chr1_1:69124392-69124411 Msa0039490:intron 35.0%
! CGGTTGATTTCTTCTTGTAT+TGG - chr1_1:69124412-69124431 Msa0039490:intron 35.0%
AATCAACAGTTTAGCACTTG+TGG - chr1_1:69124489-69124508 Msa0039490:intron 35.0%
ATTACCATCAAAGTTTCTGC+AGG - chr1_1:69124636-69124655 Msa0039490:intron 35.0%
ACCAGATAAAACATCAAGGT+TGG + chr1_1:69124750-69124769 None:intergenic 35.0%
! AACCTTGATGTTTTATCTGG+TGG - chr1_1:69124749-69124768 Msa0039490:CDS 35.0%
TTCCACCAGATAAAACATCA+AGG + chr1_1:69124754-69124773 None:intergenic 35.0%
! GATGTTTTATCTGGTGGAAT+CGG - chr1_1:69124755-69124774 Msa0039490:CDS 35.0%
! GTTGATGTTTCTGTTGAGAT+TGG - chr1_1:69124987-69125006 Msa0039490:intron 35.0%
ATGAATGGTTGTGCATTAGA+AGG + chr1_1:69125020-69125039 None:intergenic 35.0%
AGTCTTCTACAGCTTATGAA+TGG + chr1_1:69125035-69125054 None:intergenic 35.0%
!!! TGCCTGAGAAATCAGTTTTT+TGG - chr1_1:69125231-69125250 Msa0039490:intron 35.0%
TCCTAGAGATTAGTGAATCA+AGG - chr1_1:69125321-69125340 Msa0039490:CDS 35.0%
AAATGTTGACATAATGCCCT+AGG + chr1_1:69125770-69125789 None:intergenic 35.0%
CCAAAACCAGAAATAAGCAA+CGG + chr1_1:69125927-69125946 None:intergenic 35.0%
TGCTTCATCTGCTAGAAAAT+GGG - chr1_1:69126216-69126235 Msa0039490:intron 35.0%
ATGACATGAGAGTTATGACT+AGG - chr1_1:69126266-69126285 Msa0039490:CDS 35.0%
! TTGATTTTCTGCGTGATGAA+AGG - chr1_1:69126377-69126396 Msa0039490:intron 35.0%
AAACAATCCTCCTTGTAAGT+TGG - chr1_1:69126584-69126603 Msa0039490:CDS 35.0%
CATAAAACCAACTTACAAGG+AGG + chr1_1:69126594-69126613 None:intergenic 35.0%
!! ATTGAGTTAGGATCGGTTTT+GGG - chr1_1:69126616-69126635 Msa0039490:CDS 35.0%
CCTGCAAAAACAAAGATTCT+TGG + chr1_1:69126707-69126726 None:intergenic 35.0%
!!! CCAAGAATCTTTGTTTTTGC+AGG - chr1_1:69126704-69126723 Msa0039490:intron 35.0%
!! TGTTGATTCTGCAAGAAACT+TGG - chr1_1:69126751-69126770 Msa0039490:intron 35.0%
AATGGTACTTTACAGAAAGG+TGG - chr1_1:69126930-69126949 Msa0039490:five_prime_UTR 35.0%
GAAGACTATTCACCAGAATT+TGG + chr1_1:69126995-69127014 None:intergenic 35.0%
! TTTTTGAACTGGTGAGAAAG+GGG - chr1_1:69127178-69127197 Msa0039490:five_prime_UTR 35.0%
TGAGAAAGGGGTTATACATT+TGG - chr1_1:69127190-69127209 Msa0039490:five_prime_UTR 35.0%
!! GTTTTCTAGTAATGGTGGTT+CGG - chr1_1:69127328-69127347 Msa0039490:five_prime_UTR 35.0%
!! TTTTCTAGTAATGGTGGTTC+GGG - chr1_1:69127329-69127348 Msa0039490:five_prime_UTR 35.0%
! CAGAACAGACACATATGTTT+TGG + chr1_1:69127404-69127423 None:intergenic 35.0%
AAGTTGCAACTGTAAAAGGA+CGG + chr1_1:69127436-69127455 None:intergenic 35.0%
TTGCAAGTTGCAACTGTAAA+AGG + chr1_1:69127440-69127459 None:intergenic 35.0%
TTACAGTTGCAACTTGCAAA+TGG - chr1_1:69127441-69127460 Msa0039490:five_prime_UTR 35.0%
TACAGTTGCAACTTGCAAAT+GGG - chr1_1:69127442-69127461 Msa0039490:five_prime_UTR 35.0%
GCAAGAACAGTGACACATAA+GGG + chr1_1:69122479-69122498 None:intergenic 40.0%
AGCAAGAACAGTGACACATA+AGG + chr1_1:69122480-69122499 None:intergenic 40.0%
TGAACCTTGTTGGATCAGAA+AGG - chr1_1:69122529-69122548 Msa0039490:three_prime_UTR 40.0%
TCTTCCTTTCTGATCCAACA+AGG + chr1_1:69122536-69122555 None:intergenic 40.0%
CAAAAAGTCAAAGGGTTGTG+TGG - chr1_1:69122738-69122757 Msa0039490:CDS 40.0%
! AAAGTGATAGTGACGATTGC+TGG - chr1_1:69122788-69122807 Msa0039490:CDS 40.0%
! AGCTTAGATACTAGTCTGCT+TGG - chr1_1:69123203-69123222 Msa0039490:intron 40.0%
! GCTTAGATACTAGTCTGCTT+GGG - chr1_1:69123204-69123223 Msa0039490:intron 40.0%
! AGGATTATCTGGTGATGATC+AGG - chr1_1:69123283-69123302 Msa0039490:intron 40.0%
! TTATCTGGTGATGATCAGGA+TGG - chr1_1:69123287-69123306 Msa0039490:intron 40.0%
! TTTGATTAGGAGTGTGTCTG+TGG + chr1_1:69123349-69123368 None:intergenic 40.0%
TTGGATCTTAGCAAGAGACT+TGG - chr1_1:69123524-69123543 Msa0039490:CDS 40.0%
! TCTTAGCAAGAGACTTGGTT+TGG - chr1_1:69123529-69123548 Msa0039490:CDS 40.0%
TGAATCAGACTCAACTGGAA+AGG - chr1_1:69123837-69123856 Msa0039490:CDS 40.0%
GGCATGAGAACATAATGCTT+AGG - chr1_1:69123858-69123877 Msa0039490:CDS 40.0%
TGAGAACATAATGCTTAGGC+AGG - chr1_1:69123862-69123881 Msa0039490:CDS 40.0%
CAGGAAAATGACAAGCTAAG+AGG - chr1_1:69123881-69123900 Msa0039490:CDS 40.0%
GGAAAATGACAAGCTAAGAG+GGG - chr1_1:69123883-69123902 Msa0039490:CDS 40.0%
CCACCACAGTTGTTACATAT+TGG + chr1_1:69123941-69123960 None:intergenic 40.0%
CCAATATGTAACAACTGTGG+TGG - chr1_1:69123938-69123957 Msa0039490:CDS 40.0%
AATATTTGGCCAGGAATTGC+TGG + chr1_1:69123965-69123984 None:intergenic 40.0%
TCTTCGAACAATATTTGGCC+AGG + chr1_1:69123974-69123993 None:intergenic 40.0%
GGTGCTCTTCGAACAATATT+TGG + chr1_1:69123979-69123998 None:intergenic 40.0%
! GGGCGTTTTCAATTCTAATC+TGG + chr1_1:69124000-69124019 None:intergenic 40.0%
AATTGAAAACGCCCGTCTAA+AGG - chr1_1:69124006-69124025 Msa0039490:intron 40.0%
GTTCAATTCGTCCTTTAGAC+GGG + chr1_1:69124020-69124039 None:intergenic 40.0%
GGTTCAATTCGTCCTTTAGA+CGG + chr1_1:69124021-69124040 None:intergenic 40.0%
GCCTTAACAAACAAGTTCCT+TGG - chr1_1:69124049-69124068 Msa0039490:intron 40.0%
! GCCAAGGAACTTGTTTGTTA+AGG + chr1_1:69124053-69124072 None:intergenic 40.0%
! ATCATCATTGGCTAATCCCA+TGG - chr1_1:69124081-69124100 Msa0039490:intron 40.0%
AAGTTCCAGACCAGAATTTG+AGG + chr1_1:69124116-69124135 None:intergenic 40.0%
! TCAAATTCTGGTCTGGAACT+TGG - chr1_1:69124115-69124134 Msa0039490:intron 40.0%
! GAACTTGGTATTGGAAGGAA+CGG - chr1_1:69124130-69124149 Msa0039490:intron 40.0%
CCTGGTATTAGTTCACCAAT+GGG - chr1_1:69124226-69124245 Msa0039490:intron 40.0%
TAGTTCACCAATGGGATTGA+TGG - chr1_1:69124234-69124253 Msa0039490:intron 40.0%
AGTTCACCAATGGGATTGAT+GGG - chr1_1:69124235-69124254 Msa0039490:intron 40.0%
TGATGTTCAGCTTGAGAGAT+CGG - chr1_1:69124267-69124286 Msa0039490:intron 40.0%
! GGCTCTAATAGATCTTGCAT+TGG - chr1_1:69124288-69124307 Msa0039490:intron 40.0%
TCCTGTTTGGATTAAGGGTT+TGG - chr1_1:69124351-69124370 Msa0039490:intron 40.0%
TCCAAACCCTTAATCCAAAC+AGG + chr1_1:69124355-69124374 None:intergenic 40.0%
GTTTGGATTAAGGGTTTGGA+TGG - chr1_1:69124355-69124374 Msa0039490:intron 40.0%
AGCACTTGTGGAAACTTTGA+TGG - chr1_1:69124501-69124520 Msa0039490:intron 40.0%
! TGTGGAAACTTTGATGGATG+CGG - chr1_1:69124507-69124526 Msa0039490:intron 40.0%
CAAACCTGCAGAAACTTTGA+TGG + chr1_1:69124643-69124662 None:intergenic 40.0%
! GCCAACCTTGATGTTTTATC+TGG - chr1_1:69124746-69124765 Msa0039490:CDS 40.0%
! AAGTTTGCTTCAATGTGCCT+TGG - chr1_1:69124831-69124850 Msa0039490:CDS 40.0%
TAGTAAGCTCTTGCAAACCA+AGG + chr1_1:69124851-69124870 None:intergenic 40.0%
!! TTGGTTTGCAAGAGCTTACT+AGG - chr1_1:69124850-69124869 Msa0039490:CDS 40.0%
GCAATTTCAGATGCATACTG+AGG - chr1_1:69124878-69124897 Msa0039490:CDS 40.0%
TTCGTCAAGTGAGAATCCTT+CGG - chr1_1:69124928-69124947 Msa0039490:CDS 40.0%
CTCAACAGAAACATCAACCA+CGG + chr1_1:69124985-69125004 None:intergenic 40.0%
ATTGTGCAGGATATGCCAAA+TGG - chr1_1:69125068-69125087 Msa0039490:CDS 40.0%
TATGCCAAATGGTTACTCCA+AGG - chr1_1:69125079-69125098 Msa0039490:CDS 40.0%
CTTACCTTGGAGTAACCATT+TGG + chr1_1:69125086-69125105 None:intergenic 40.0%
ACGTGTATTAGCACTTACCT+TGG + chr1_1:69125099-69125118 None:intergenic 40.0%
!! ATCTCTAGGAGTACTAGAAG+TGG + chr1_1:69125311-69125330 None:intergenic 40.0%
GCCTTGATTCACTAATCTCT+AGG + chr1_1:69125325-69125344 None:intergenic 40.0%
CTATAATCTGCCAAGTGTGT+CGG - chr1_1:69125651-69125670 Msa0039490:CDS 40.0%
TATAATCTGCCAAGTGTGTC+GGG - chr1_1:69125652-69125671 Msa0039490:CDS 40.0%
TACAGATGTCAGAAGGATAG+AGG + chr1_1:69125683-69125702 None:intergenic 40.0%
TTGCATTGTTGTAGGTCACT+TGG - chr1_1:69125853-69125872 Msa0039490:CDS 40.0%
TATCGTCCGTTGCTTATTTC+TGG - chr1_1:69125918-69125937 Msa0039490:CDS 40.0%
!!! CCGTTGCTTATTTCTGGTTT+TGG - chr1_1:69125924-69125943 Msa0039490:CDS 40.0%
! ATCATCGTTTGAGATGGAAG+AGG + chr1_1:69126015-69126034 None:intergenic 40.0%
CATCTCAAACGATGATCACA+CGG - chr1_1:69126019-69126038 Msa0039490:intron 40.0%
ATCTCAAACGATGATCACAC+GGG - chr1_1:69126020-69126039 Msa0039490:intron 40.0%
! TAGAAGAAGCATGTTGAAGC+TGG - chr1_1:69126156-69126175 Msa0039490:intron 40.0%
ATGACCAACAACTTCTGTTC+TGG - chr1_1:69126187-69126206 Msa0039490:intron 40.0%
TGACCAACAACTTCTGTTCT+GGG - chr1_1:69126188-69126207 Msa0039490:intron 40.0%
GTGCTTCATCTGCTAGAAAA+TGG - chr1_1:69126215-69126234 Msa0039490:intron 40.0%
!! AGGAAAAATGTTGATGACCC+TGG - chr1_1:69126286-69126305 Msa0039490:CDS 40.0%
AACAGTCTTTGTCGTGAAAC+TGG + chr1_1:69126358-69126377 None:intergenic 40.0%
! GAGTGGGACATTTTGTCTAA+TGG - chr1_1:69126409-69126428 Msa0039490:intron 40.0%
! TGGGACATTTTGTCTAATGG+TGG - chr1_1:69126412-69126431 Msa0039490:intron 40.0%
ATGTGAACCATCTCTTGCAT+GGG + chr1_1:69126439-69126458 None:intergenic 40.0%
AATGTGAACCATCTCTTGCA+TGG + chr1_1:69126440-69126459 None:intergenic 40.0%
TTCACATTGCCAAAGGTCAA+GGG - chr1_1:69126452-69126471 Msa0039490:intron 40.0%
!! GATTGAGTTAGGATCGGTTT+TGG - chr1_1:69126615-69126634 Msa0039490:CDS 40.0%
GATTCTGCAAGAAACTTGGA+TGG - chr1_1:69126755-69126774 Msa0039490:intron 40.0%
TTGGATGGATACATCTTGCT+CGG - chr1_1:69126770-69126789 Msa0039490:intron 40.0%
! TCATTGAATGTGGTGATGAG+TGG - chr1_1:69126822-69126841 Msa0039490:CDS 40.0%
! TGCAGCTTTGATCTTCTGAA+TGG + chr1_1:69127075-69127094 None:intergenic 40.0%
TGTATAGGAAGGGTTGCTTA+AGG - chr1_1:69127214-69127233 Msa0039490:five_prime_UTR 40.0%
!! TGTCACTGTTCTTGCTGTTG+TGG - chr1_1:69122484-69122503 Msa0039490:three_prime_UTR 45.0%
!! GTCACTGTTCTTGCTGTTGT+GGG - chr1_1:69122485-69122504 Msa0039490:three_prime_UTR 45.0%
GAAGCATGTGTGAACCTTGT+TGG - chr1_1:69122519-69122538 Msa0039490:three_prime_UTR 45.0%
!! TTGTTTGTGGGGTGTTGACA+AGG - chr1_1:69122640-69122659 Msa0039490:three_prime_UTR 45.0%
GAGTGTGAACAGTTCCTGTA+AGG - chr1_1:69122931-69122950 Msa0039490:CDS 45.0%
GAGAGGATGAGTATGAAAGC+CGG - chr1_1:69123234-69123253 Msa0039490:intron 45.0%
! TCATTTGGGTTCGACGATTC+TGG + chr1_1:69123580-69123599 None:intergenic 45.0%
GAATCGTCGAACCCAAATGA+AGG - chr1_1:69123580-69123599 Msa0039490:CDS 45.0%
CGCAACTCAGATTGTGATTG+CGG + chr1_1:69123643-69123662 None:intergenic 45.0%
CGCAATCACAATCTGAGTTG+CGG - chr1_1:69123641-69123660 Msa0039490:CDS 45.0%
CAATCTGAGTTGCGGCATTA+AGG - chr1_1:69123649-69123668 Msa0039490:CDS 45.0%
TTTGAGGATGGTAGAGCCAT+GGG + chr1_1:69124100-69124119 None:intergenic 45.0%
ATTTGAGGATGGTAGAGCCA+TGG + chr1_1:69124101-69124120 None:intergenic 45.0%
GCTCTACCATCCTCAAATTC+TGG - chr1_1:69124103-69124122 Msa0039490:intron 45.0%
ACCATCCTCAAATTCTGGTC+TGG - chr1_1:69124108-69124127 Msa0039490:intron 45.0%
TCCAGACCAGAATTTGAGGA+TGG + chr1_1:69124112-69124131 None:intergenic 45.0%
! TCTGGTCTGGAACTTGGTAT+TGG - chr1_1:69124121-69124140 Msa0039490:intron 45.0%
! GTCTGGAACTTGGTATTGGA+AGG - chr1_1:69124125-69124144 Msa0039490:intron 45.0%
!! GGTATTGGAAGGAACGGTTT+TGG - chr1_1:69124136-69124155 Msa0039490:intron 45.0%
!! ATTGGAAGGAACGGTTTTGG+TGG - chr1_1:69124139-69124158 Msa0039490:intron 45.0%
CATTGGCAAAGGATTGCCAA+GGG + chr1_1:69124176-69124195 None:intergenic 45.0%
CTTGGCAATCCTTTGCCAAT+GGG - chr1_1:69124175-69124194 Msa0039490:intron 45.0%
AGATCAAGTCCCATTGGCAA+AGG + chr1_1:69124187-69124206 None:intergenic 45.0%
TTGCCAATGGGACTTGATCT+CGG - chr1_1:69124187-69124206 Msa0039490:intron 45.0%
GCCTGGTATTAGTTCACCAA+TGG - chr1_1:69124225-69124244 Msa0039490:intron 45.0%
CCCATTGGTGAACTAATACC+AGG + chr1_1:69124229-69124248 None:intergenic 45.0%
CTACTTCCCATCAATCCCAT+TGG + chr1_1:69124244-69124263 None:intergenic 45.0%
!! AGATCTTGCATTGGCTGCTA+TGG - chr1_1:69124297-69124316 Msa0039490:intron 45.0%
CTCAGACAGATAGTCCTGTT+TGG - chr1_1:69124338-69124357 Msa0039490:intron 45.0%
! TGTATTGGTCCTAAACCTGC+TGG - chr1_1:69124427-69124446 Msa0039490:intron 45.0%
! GTTTTATCTGGTGGAATCGG+TGG - chr1_1:69124758-69124777 Msa0039490:CDS 45.0%
GGAATCGGTGGAACAAGAAA+TGG - chr1_1:69124770-69124789 Msa0039490:CDS 45.0%
ATTGCTTTCACCACTAGTCC+CGG - chr1_1:69124905-69124924 Msa0039490:CDS 45.0%
AGGATTCTCACTTGACGAAC+CGG + chr1_1:69124927-69124946 None:intergenic 45.0%
TTCTGTAAGCAGCATGCAGA+AGG - chr1_1:69124951-69124970 Msa0039490:intron 45.0%
AGCTGTAGAAGACTTCCTTC+TGG - chr1_1:69125041-69125060 Msa0039490:CDS 45.0%
TGTACGAGACCAATATGACC+TGG - chr1_1:69125510-69125529 Msa0039490:CDS 45.0%
GAACTGGATCCAGGTCATAT+TGG + chr1_1:69125522-69125541 None:intergenic 45.0%
TAAGCAACGGACGATAGAGT+TGG + chr1_1:69125914-69125933 None:intergenic 45.0%
TTGGATTTGGCGCTCATAGA+TGG - chr1_1:69125943-69125962 Msa0039490:CDS 45.0%
TTGAGATGGAAGAGGACATG+AGG + chr1_1:69126007-69126026 None:intergenic 45.0%
CGTGTGATCATCGTTTGAGA+TGG + chr1_1:69126021-69126040 None:intergenic 45.0%
ACATGCTTCTTCTACCAGCT+TGG + chr1_1:69126150-69126169 None:intergenic 45.0%
GACCAACAACTTCTGTTCTG+GGG - chr1_1:69126189-69126208 Msa0039490:intron 45.0%
AACCCCAGAACAGAAGTTGT+TGG + chr1_1:69126194-69126213 None:intergenic 45.0%
AAAATGGGACAGCCTCCAAA+TGG - chr1_1:69126231-69126250 Msa0039490:intron 45.0%
AAATGGGACAGCCTCCAAAT+GGG - chr1_1:69126232-69126251 Msa0039490:intron 45.0%
TTAGCGCTGCAACATCTGTT+TGG - chr1_1:69126329-69126348 Msa0039490:CDS 45.0%
ATGAAAGGCTTAGAAGCGAG+TGG - chr1_1:69126392-69126411 Msa0039490:intron 45.0%
TGAAAGGCTTAGAAGCGAGT+GGG - chr1_1:69126393-69126412 Msa0039490:intron 45.0%
GAGATGGTTCACATTGCCAA+AGG - chr1_1:69126445-69126464 Msa0039490:intron 45.0%
GTTCACATTGCCAAAGGTCA+AGG - chr1_1:69126451-69126470 Msa0039490:intron 45.0%
TTCAATGATTGCCCGTCAAC+TGG + chr1_1:69126810-69126829 None:intergenic 45.0%
! TGACGGGCAATCATTGAATG+TGG - chr1_1:69126812-69126831 Msa0039490:CDS 45.0%
TATGTTGCACTCTTGCCTTC+AGG - chr1_1:69126858-69126877 Msa0039490:CDS 45.0%
GGAACAATTGCAAAGCCTGA+AGG + chr1_1:69126876-69126895 None:intergenic 45.0%
GGCTTTGCAATTGTTCCTGA+TGG - chr1_1:69126879-69126898 Msa0039490:CDS 45.0%
ACTTTACAGAAAGGTGGTGC+TGG - chr1_1:69126936-69126955 Msa0039490:five_prime_UTR 45.0%
CACAGTCGGATTCCAAATTC+TGG - chr1_1:69126980-69126999 Msa0039490:five_prime_UTR 45.0%
! AACTGACTCCATTGTGAGCT+TGG + chr1_1:69127024-69127043 None:intergenic 45.0%
TAGGAAGGGTTGCTTAAGGA+AGG - chr1_1:69127218-69127237 Msa0039490:five_prime_UTR 45.0%
CAAGAACGAACCGCGAAAAA+AGG - chr1_1:69127249-69127268 Msa0039490:five_prime_UTR 45.0%
GAATGCAAAGACTAACTCGC+AGG + chr1_1:69127369-69127388 None:intergenic 45.0%
GGCAAGTCTTGCAACCTTAC+AGG + chr1_1:69122948-69122967 None:intergenic 50.0%
!! CAGAGTGAGATTGGTCTCAC+TGG - chr1_1:69123176-69123195 Msa0039490:intron 50.0%
TCTGCTTGGGAGAATGAGAG+AGG - chr1_1:69123217-69123236 Msa0039490:intron 50.0%
GATGAGTATGAAAGCCGGTC+CGG - chr1_1:69123239-69123258 Msa0039490:intron 50.0%
CAAAGTTATCGCTTCCGGAC+CGG + chr1_1:69123256-69123275 None:intergenic 50.0%
! TCTGGTGATGATCAGGATGG+TGG - chr1_1:69123290-69123309 Msa0039490:intron 50.0%
! GATCAGGATGGTGGTGATGA+TGG - chr1_1:69123299-69123318 Msa0039490:intron 50.0%
CCATTGGCAAAGGATTGCCA+AGG + chr1_1:69124177-69124196 None:intergenic 50.0%
CCTTGGCAATCCTTTGCCAA+TGG - chr1_1:69124174-69124193 Msa0039490:intron 50.0%
TCTCCGAGATCAAGTCCCAT+TGG + chr1_1:69124193-69124212 None:intergenic 50.0%
ATGGGACTTGATCTCGGAGA+TGG - chr1_1:69124193-69124212 Msa0039490:intron 50.0%
GCAACAAAGCCAGCAGGTTT+AGG + chr1_1:69124439-69124458 None:intergenic 50.0%
GCTGAAGCTACGAGAGAAAC+CGG - chr1_1:69124457-69124476 Msa0039490:intron 50.0%
CTGAAGCTACGAGAGAAACC+GGG - chr1_1:69124458-69124477 Msa0039490:intron 50.0%
GGATTCTCACTTGACGAACC+GGG + chr1_1:69124926-69124945 None:intergenic 50.0%
! CATGCTGCTTACAGAACCGA+AGG + chr1_1:69124947-69124966 None:intergenic 50.0%
! AGCAGCATGCAGAAGGTGTA+TGG - chr1_1:69124958-69124977 Msa0039490:intron 50.0%
! GCAGCATGCAGAAGGTGTAT+GGG - chr1_1:69124959-69124978 Msa0039490:intron 50.0%
! TCCTTCTGGCTGTATTGTGC+AGG - chr1_1:69125055-69125074 Msa0039490:CDS 50.0%
TCCTGCACAATACAGCCAGA+AGG + chr1_1:69125059-69125078 None:intergenic 50.0%
TAGCATTCGCAGCAGAGAAC+TGG + chr1_1:69125538-69125557 None:intergenic 50.0%
AGGTCACTTGGATTGAGCAC+TGG - chr1_1:69125865-69125884 Msa0039490:CDS 50.0%
GGTCACTTGGATTGAGCACT+GGG - chr1_1:69125866-69125885 Msa0039490:CDS 50.0%
! TTTGCAGCATTGAGCCAAGC+TGG - chr1_1:69126133-69126152 Msa0039490:intron 50.0%
AATGGGACAGCCTCCAAATG+GGG - chr1_1:69126233-69126252 Msa0039490:intron 50.0%
CATCACTCAGAGTCCCCATT+TGG + chr1_1:69126249-69126268 None:intergenic 50.0%
ATTGCCAAAGGTCAAGGGCA+AGG - chr1_1:69126457-69126476 Msa0039490:CDS 50.0%
GTTTCCTTGCCCTTGACCTT+TGG + chr1_1:69126464-69126483 None:intergenic 50.0%
GATGGATACATCTTGCTCGG+TGG - chr1_1:69126773-69126792 Msa0039490:intron 50.0%
GTGGTGTATGCACCAGTTGA+CGG - chr1_1:69126795-69126814 Msa0039490:intron 50.0%
TGGTGTATGCACCAGTTGAC+GGG - chr1_1:69126796-69126815 Msa0039490:intron 50.0%
CCAGAGGGATCATTACCATC+AGG + chr1_1:69126897-69126916 None:intergenic 50.0%
! CCTGATGGTAATGATCCCTC+TGG - chr1_1:69126894-69126913 Msa0039490:CDS 50.0%
GGTAATGATCCCTCTGGCTA+CGG - chr1_1:69126900-69126919 Msa0039490:exon 50.0%
TTTGACATGCCGTAGCCAGA+GGG + chr1_1:69126912-69126931 None:intergenic 50.0%
ATTTGACATGCCGTAGCCAG+AGG + chr1_1:69126913-69126932 None:intergenic 50.0%
TCTGGCTACGGCATGTCAAA+TGG - chr1_1:69126912-69126931 Msa0039490:exon 50.0%
! GGTGGAAGTTTGCTCACAGT+CGG - chr1_1:69126966-69126985 Msa0039490:five_prime_UTR 50.0%
TCCAACTGCCAAGCTCACAA+TGG - chr1_1:69127013-69127032 Msa0039490:five_prime_UTR 50.0%
TCCATTGTGAGCTTGGCAGT+TGG + chr1_1:69127017-69127036 None:intergenic 50.0%
ACCGCGAAAAAAGGAACTCG+TGG - chr1_1:69127258-69127277 Msa0039490:five_prime_UTR 50.0%
!!! GCCACGAGTTCCTTTTTTCG+CGG + chr1_1:69127262-69127281 None:intergenic 50.0%
ATGGAGGGGCAGAGTGAGAT+TGG - chr1_1:69123167-69123186 Msa0039490:intron 55.0%
!! GTGATGATGGTCAGCGCAAG+AGG - chr1_1:69123312-69123331 Msa0039490:intron 55.0%
!! TGTGGTGGACCAGCAATTCC+TGG - chr1_1:69123953-69123972 Msa0039490:intron 55.0%
!! GGAAGGAACGGTTTTGGTGG+TGG - chr1_1:69124142-69124161 Msa0039490:intron 55.0%
GCTTCAGCAACAAAGCCAGC+AGG + chr1_1:69124445-69124464 None:intergenic 55.0%
ACTTGACGAACCGGGACTAG+TGG + chr1_1:69124918-69124937 None:intergenic 55.0%
GAGGTGAATCCCGACACACT+TGG + chr1_1:69125664-69125683 None:intergenic 55.0%
! TTCACACTGCCTTTGGAGGG+TGG + chr1_1:69125973-69125992 None:intergenic 55.0%
ACCCTCCAAAGGCAGTGTGA+AGG - chr1_1:69125972-69125991 Msa0039490:CDS 55.0%
GCCTTCACACTGCCTTTGGA+GGG + chr1_1:69125976-69125995 None:intergenic 55.0%
AGCCTTCACACTGCCTTTGG+AGG + chr1_1:69125977-69125996 None:intergenic 55.0%
CCAAGCCTTCACACTGCCTT+TGG + chr1_1:69125980-69125999 None:intergenic 55.0%
CCAAAGGCAGTGTGAAGGCT+TGG - chr1_1:69125977-69125996 Msa0039490:intron 55.0%
CACTCAGAGTCCCCATTTGG+AGG + chr1_1:69126246-69126265 None:intergenic 55.0%
TGCAGCGCTAAGCACGATAC+CGG + chr1_1:69126320-69126339 None:intergenic 55.0%
! TGGTGGACCCATGCAAGAGA+TGG - chr1_1:69126429-69126448 Msa0039490:intron 55.0%
! GGATACATCTTGCTCGGTGG+TGG - chr1_1:69126776-69126795 Msa0039490:intron 55.0%
! GGTGGTGGTTCAAGCTCCCT+TGG - chr1_1:69124157-69124176 Msa0039490:intron 60.0%
GGAGATGGTCGCTCAATGCC+TGG - chr1_1:69124208-69124227 Msa0039490:intron 60.0%
! TGCAGAAGGTGTATGGGCCG+TGG - chr1_1:69124965-69124984 Msa0039490:intron 60.0%
CGCAGCAGAGAACTGGATCC+AGG + chr1_1:69125531-69125550 None:intergenic 60.0%
GATGGATCGCCACCCTCCAA+AGG - chr1_1:69125961-69125980 Msa0039490:CDS 60.0%
GCAGCGCTAAGCACGATACC+GGG + chr1_1:69126319-69126338 None:intergenic 60.0%
!! CAGAAAGGTGGTGCTGGCGA+TGG - chr1_1:69126942-69126961 Msa0039490:five_prime_UTR 60.0%
!! AAAGGTGGTGCTGGCGATGG+TGG - chr1_1:69126945-69126964 Msa0039490:five_prime_UTR 60.0%
GGAACTCGTGGCGTTGCTGA+TGG - chr1_1:69127270-69127289 Msa0039490:five_prime_UTR 60.0%
GCGCTAAGCACGATACCGGG+AGG + chr1_1:69126316-69126335 None:intergenic 65.0%
GATGACCCTGGCGAGCCTCC+CGG - chr1_1:69126298-69126317 Msa0039490:CDS 70.0%
CGATACCGGGAGGCTCGCCA+GGG + chr1_1:69126306-69126325 None:intergenic 70.0%
ACGATACCGGGAGGCTCGCC+AGG + chr1_1:69126307-69126326 None:intergenic 70.0%
!! GGTGGTGCTGGCGATGGTGG+TGG - chr1_1:69126948-69126967 Msa0039490:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69122347 69127490 69122347 ID=Msa0039490;Name=Msa0039490
chr1_1 mRNA 69122347 69127490 69122347 ID=Msa0039490-mRNA-1;Parent=Msa0039490;Name=Msa0039490-mRNA-1;_AED=0.09;_eAED=0.09;_QI=573|1|1|1|0.87|0.77|9|381|792
chr1_1 exon 69122347 69123111 69122347 ID=Msa0039490-mRNA-1:exon:22636;Parent=Msa0039490-mRNA-1
chr1_1 exon 69123330 69123697 69123330 ID=Msa0039490-mRNA-1:exon:22635;Parent=Msa0039490-mRNA-1
chr1_1 exon 69123796 69123970 69123796 ID=Msa0039490-mRNA-1:exon:22634;Parent=Msa0039490-mRNA-1
chr1_1 exon 69124737 69124949 69124737 ID=Msa0039490-mRNA-1:exon:22633;Parent=Msa0039490-mRNA-1
chr1_1 exon 69125032 69125133 69125032 ID=Msa0039490-mRNA-1:exon:22632;Parent=Msa0039490-mRNA-1
chr1_1 exon 69125309 69125992 69125309 ID=Msa0039490-mRNA-1:exon:22631;Parent=Msa0039490-mRNA-1
chr1_1 exon 69126236 69126353 69126236 ID=Msa0039490-mRNA-1:exon:22630;Parent=Msa0039490-mRNA-1
chr1_1 exon 69126453 69126679 69126453 ID=Msa0039490-mRNA-1:exon:22629;Parent=Msa0039490-mRNA-1
chr1_1 exon 69126810 69127490 69126810 ID=Msa0039490-mRNA-1:exon:22628;Parent=Msa0039490-mRNA-1
chr1_1 five_prime_UTR 69126918 69127490 69126918 ID=Msa0039490-mRNA-1:five_prime_utr;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69126810 69126917 69126810 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69126453 69126679 69126453 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69126236 69126353 69126236 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69125309 69125992 69125309 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69125032 69125133 69125032 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69124737 69124949 69124737 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69123796 69123970 69123796 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69123330 69123697 69123330 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 CDS 69122728 69123111 69122728 ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1 three_prime_UTR 69122347 69122727 69122347 ID=Msa0039490-mRNA-1:three_prime_utr;Parent=Msa0039490-mRNA-1
Gene Sequence

>Msa0039490

ATGGGGTTTGAGAGTGTGAACAGTTCCTGTAAGGTTGCAAGACTTGCCACTGATATTTCTATACCCTTTTCTAGTTCAATGCAAAATCCATCTTCTTTCTTCTCAACTCAAAGAAAAATGGAGGGGCAGAGTGAGATTGGTCTCACTGGTGATAGCTTAGATACTAGTCTGCTTGGGAGAATGAGAGAGGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGATCTTGAAGGATTATCTGGTGATGATCAGGATGGTGGTGATGATGGTCAGCGCAAGAGGAAGAAGAGATACCACAGACACACTCCTAATCAAATTCAAGAGCTTGAATCTTTCTTCAAGGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGCAAGAGACTTGGTTTGGAAAATAAACAAGTAAAATTCTGGTTCCAGAATCGTCGAACCCAAATGAAGACTCAACTGGAAAGGCATGAGAACATAATGCTTAGGCAGGAAAATGACAAGCTAAGAGGGGAGAATAGCATGATGAAAGAAGCAATGGTGAATCCAATATGTAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATATTGTTCGAAGAGCACCAGATTAGAATTGAAAACGCCCGTCTAAAGGACGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTTGGCAAACCAATATCATCATTGGCTAATCCCATGGCTCTACCATCCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAACGGTTTTGGTGGTGGTTCAAGCTCCCTTGGCAATCCTTTGCCAATGGGACTTGATCTCGGAGATGGTCGCTCAATGCCTGGTATTAGTTCACCAATGGGATTGATGGGAAGTAGTAGTGATGTTCAGCTTGAGAGATCGGCTCTAATAGATCTTGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAGTCCTGTTTGGATTAAGGGTTTGGATGGAGAGAGAGACATATTGAATCAAGAAGAGTATGGACGGTTGATTTCTTCTTGTATTGGTCCTAAACCTGCTGGCTTTGTTGCTGAAGCTACGAGAGAAACCGGGATAGTAATAATCAACAGTTTAGCACTTGTGGAAACTTTGATGGATGCGAATCGGTACGCAGATATGTTTCAGTCTATGATTGCTAGATCTGCCAACCTTGATGTTTTATCTGGTGGAATCGGTGGAACAAGAAATGGTGCTATACATTTGATGCATACTGAGGTTCAATTGCTTTCACCACTAGTCCCGGTTCGTCAAGTGAGAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTGTTGAGATTGGTCATGATCCTTCTAATGCACAACCATTCATAAGCTGTAGAAGACTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCACTGGGAGTATGATGAGAGTGTTGTTCACCAACTCTATCGTCCGTTGCTTATTTCTGGTTTTGGATTTGGCGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATCCTCATGTCCTCTTCCATCTCAAACGATGATCACACGGCATTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGTATGACCAACAACTTCTGTTCTGGGGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTCCAAATGGGGACTCTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGCGAGCCTCCCGGTATCGTGCTTAGCGCTGCAACATCTGTTTGGATGCCAGTTTCACGACAAAGACTGTTTGATTTTCTGCGTGATGAAAGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCCATGCAAGAGATGGTTCACATTGCCAAAGGTCAAGGGCAAGGAAACTGCGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAAACTTGGATGGATACATCTTGCTCGGTGGTGGTGTATGCACCAGTTGACGGGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCAATTGTTCCTGATGGTAATGATCCCTCTGGCTACGGCATGTCAAATGGTACTTTACAGAAAGGTGGTGCTGGCGATGGTGGTGGAAGTTTGCTCACAGTCGGATTCCAAATTCTGGTGAATAGTCTTCCAACTGCCAAGCTCACAATGGAGTCAGTTGATACTGTGAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA
Protein sequence

>Msa0039490

MGFESVNSSCKVARLATDISIPFSSSMQNPSSFFSTQRKMEGQSEIGLTGDSLDTSLLGRMREDEYESRSGSDNFDLEGLSGDDQDGGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPSSNSGLELGIGRNGFGGGSSSLGNPLPMGLDLGDGRSMPGISSPMGLMGSSSDVQLERSALIDLALAAMDELLKMAQTDSPVWIKGLDGERDILNQEEYGRLISSCIGPKPAGFVAEATRETGIVIINSLALVETLMDANRYADMFQSMIARSANLDVLSGGIGGTRNGAIHLMHTEVQLLSPLVPVRQVRILRFCKQHAEGVWAVVDVSVEIGHDPSNAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGFGFGAHRWIATLQRQCEGLAILMSSSISNDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNDPSGYGMSNGTLQKGGAGDGGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA*