AlfalfaGEDB | Msa0039490

M. sativa cultivar zhongmu-4 / Msa0039490

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009827 GO:0009888 GO:0009889 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031047 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0042335 GO:0042545 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0043565 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045229 GO:0046483 GO:0046983 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048580 GO:0048582 GO:0048731 GO:0048764 GO:0048765 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0071514 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0039490	sp\|Q0WV12\|ANL2_ARATH	63.108	740	239	9	51	790	94	799	0.0	917

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0039490	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0039490	0.812243	4.676090e-51	-8.615850e-47
Msa0007450	Msa0039490	0.805300	1.426648e-49	-8.615850e-47
Msa0010460	Msa0039490	-0.818292	2.114738e-52	-8.615850e-47
Msa0012460	Msa0039490	0.801779	7.665326e-49	-8.615850e-47
Msa0017120	Msa0039490	0.830819	2.368563e-55	-8.615850e-47
Msa0018220	Msa0039490	0.832201	1.082221e-55	-8.615850e-47
Msa0030730	Msa0039490	0.819312	1.240691e-52	-8.615850e-47
Msa0032120	Msa0039490	0.809964	1.458480e-50	-8.615850e-47
Msa0032400	Msa0039490	0.825165	5.439548e-54	-8.615850e-47
Msa0039490	Msa0041540	0.818378	2.022805e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0039490	MtrunA17_Chr1g0203671	98.737	792	10	0	1	792	1	792	0.0	1617
Msa0039490	MtrunA17_Chr8g0350321	64.848	788	247	12	14	790	39	807	0.0	997
Msa0039490	MtrunA17_Chr7g0246631	65.706	729	221	9	69	790	69	775	0.0	976
Msa0039490	MtrunA17_Chr6g0472471	58.236	771	295	12	36	792	11	768	0.0	879
Msa0039490	MtrunA17_Chr2g0322731	53.678	734	301	10	60	789	67	765	0.0	739
Msa0039490	MtrunA17_Chr4g0024351	51.907	734	317	11	60	789	28	729	0.0	729
Msa0039490	MtrunA17_Chr6g0481041	46.133	724	349	15	86	789	21	723	0.0	628
Msa0039490	MtrunA17_Chr5g0410711	41.351	740	403	16	63	789	57	778	0.0	585
Msa0039490	MtrunA17_Chr2g0331581	41.954	696	350	11	99	789	143	789	0.0	564
Msa0039490	MtrunA17_Chr5g0394111	37.158	732	356	12	68	789	9	646	5.57e-155	466

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0039490	AT4G00730.1	63.108	740	239	9	51	790	94	799	917
Msa0039490	AT3G61150.1	58.435	818	271	15	1	789	26	803	906
Msa0039490	AT4G04890.2	51.558	770	331	13	27	789	1	735	771
Msa0039490	AT4G04890.1	51.558	770	331	13	27	789	1	735	771
Msa0039490	AT5G52170.3	51.905	761	276	14	40	791	1	680	748
Msa0039490	AT5G52170.1	51.905	761	276	14	40	791	1	680	748
Msa0039490	AT5G52170.2	51.567	766	276	15	40	791	1	685	743
Msa0039490	AT1G05230.8	51.351	740	308	12	54	789	25	716	741
Msa0039490	AT1G05230.4	51.351	740	308	12	54	789	25	716	741
Msa0039490	AT1G05230.9	51.351	740	308	12	54	789	25	716	741

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Find 241 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAACAAGTAAAATTC+TGG	0.292831	1_1:-69126263	Msa0039490:CDS
AAAATGGGACAGCCTCCAAA+TGG	0.457660	1_1:-69123584	Msa0039490:CDS
AAAGGGTATAGAAATATCAG+TGG	0.663426	1_1:+69126849	None:intergenic
AAAGGTGGTGCTGGCGATGG+TGG	0.526742	1_1:-69122870	Msa0039490:CDS
AAAGTGATAGTGACGATTGC+TGG	0.435596	1_1:-69127027	Msa0039490:five_prime_UTR
AAATGGGACAGCCTCCAAAT+GGG	0.490793	1_1:-69123583	Msa0039490:CDS
AACAGTCTTTGTCGTGAAAC+TGG	0.348067	1_1:+69123460	None:intergenic
AACCCCAGAACAGAAGTTGT+TGG	0.545437	1_1:+69123624	None:intergenic
AACTGACTCCATTGTGAGCT+TGG	0.411048	1_1:+69122794	None:intergenic
AAGAAATGGTGCTATACATT+TGG	0.420804	1_1:-69125031	Msa0039490:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATCCAAAAACATTGCA+TGG	+	chr1_1:69122366-69122385	None:intergenic	30.0%
TCTCAATACTGACAAGAAAT+TGG	-	chr1_1:69122409-69122428	Msa0039490:three_prime_UTR	30.0%
CCAGAAAAAACAGATGAAAA+AGG	+	chr1_1:69122583-69122602	None:intergenic	30.0%
AATCTGAGTCAAAAAGTCAA+AGG	-	chr1_1:69122729-69122748	Msa0039490:CDS	30.0%
ATCTGAGTCAAAAAGTCAAA+GGG	-	chr1_1:69122730-69122749	Msa0039490:CDS	30.0%
TTTGATCTTGAAGGATTATC+TGG	-	chr1_1:69123272-69123291	Msa0039490:intron	30.0%
TCAAGCTCTTGAATTTGATT+AGG	+	chr1_1:69123362-69123381	None:intergenic	30.0%
AATCCAATATGTAACAACTG+TGG	-	chr1_1:69123935-69123954	Msa0039490:CDS	30.0%
TTATCAAATACTCAACCTCT+TGG	-	chr1_1:69124535-69124554	Msa0039490:intron	30.0%
AAATTACAAAGAAGACCAAG+AGG	+	chr1_1:69124553-69124572	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	69122347	69127490	69122347	ID=Msa0039490;Name=Msa0039490
chr1_1	mRNA	69122347	69127490	69122347	ID=Msa0039490-mRNA-1;Parent=Msa0039490;Name=Msa0039490-mRNA-1;_AED=0.09;_eAED=0.09;_QI=573\|1\|1\|1\|0.87\|0.77\|9\|381\|792
chr1_1	exon	69122347	69123111	69122347	ID=Msa0039490-mRNA-1:exon:22636;Parent=Msa0039490-mRNA-1
chr1_1	exon	69123330	69123697	69123330	ID=Msa0039490-mRNA-1:exon:22635;Parent=Msa0039490-mRNA-1
chr1_1	exon	69123796	69123970	69123796	ID=Msa0039490-mRNA-1:exon:22634;Parent=Msa0039490-mRNA-1
chr1_1	exon	69124737	69124949	69124737	ID=Msa0039490-mRNA-1:exon:22633;Parent=Msa0039490-mRNA-1
chr1_1	exon	69125032	69125133	69125032	ID=Msa0039490-mRNA-1:exon:22632;Parent=Msa0039490-mRNA-1
chr1_1	exon	69125309	69125992	69125309	ID=Msa0039490-mRNA-1:exon:22631;Parent=Msa0039490-mRNA-1
chr1_1	exon	69126236	69126353	69126236	ID=Msa0039490-mRNA-1:exon:22630;Parent=Msa0039490-mRNA-1
chr1_1	exon	69126453	69126679	69126453	ID=Msa0039490-mRNA-1:exon:22629;Parent=Msa0039490-mRNA-1
chr1_1	exon	69126810	69127490	69126810	ID=Msa0039490-mRNA-1:exon:22628;Parent=Msa0039490-mRNA-1
chr1_1	five_prime_UTR	69126918	69127490	69126918	ID=Msa0039490-mRNA-1:five_prime_utr;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69126810	69126917	69126810	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69126453	69126679	69126453	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69126236	69126353	69126236	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69125309	69125992	69125309	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69125032	69125133	69125032	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69124737	69124949	69124737	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69123796	69123970	69123796	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69123330	69123697	69123330	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	CDS	69122728	69123111	69122728	ID=Msa0039490-mRNA-1:cds;Parent=Msa0039490-mRNA-1
chr1_1	three_prime_UTR	69122347	69122727	69122347	ID=Msa0039490-mRNA-1:three_prime_utr;Parent=Msa0039490-mRNA-1

Gene Sequence

>Msa0039490

ATGGGGTTTGAGAGTGTGAACAGTTCCTGTAAGGTTGCAAGACTTGCCACTGATATTTCTATACCCTTTTCTAGTTCAATGCAAAATCCATCTTCTTTCTTCTCAACTCAAAGAAAAATGGAGGGGCAGAGTGAGATTGGTCTCACTGGTGATAGCTTAGATACTAGTCTGCTTGGGAGAATGAGAGAGGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGATCTTGAAGGATTATCTGGTGATGATCAGGATGGTGGTGATGATGGTCAGCGCAAGAGGAAGAAGAGATACCACAGACACACTCCTAATCAAATTCAAGAGCTTGAATCTTTCTTCAAGGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGCAAGAGACTTGGTTTGGAAAATAAACAAGTAAAATTCTGGTTCCAGAATCGTCGAACCCAAATGAAGACTCAACTGGAAAGGCATGAGAACATAATGCTTAGGCAGGAAAATGACAAGCTAAGAGGGGAGAATAGCATGATGAAAGAAGCAATGGTGAATCCAATATGTAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATATTGTTCGAAGAGCACCAGATTAGAATTGAAAACGCCCGTCTAAAGGACGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTTGGCAAACCAATATCATCATTGGCTAATCCCATGGCTCTACCATCCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAACGGTTTTGGTGGTGGTTCAAGCTCCCTTGGCAATCCTTTGCCAATGGGACTTGATCTCGGAGATGGTCGCTCAATGCCTGGTATTAGTTCACCAATGGGATTGATGGGAAGTAGTAGTGATGTTCAGCTTGAGAGATCGGCTCTAATAGATCTTGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAGTCCTGTTTGGATTAAGGGTTTGGATGGAGAGAGAGACATATTGAATCAAGAAGAGTATGGACGGTTGATTTCTTCTTGTATTGGTCCTAAACCTGCTGGCTTTGTTGCTGAAGCTACGAGAGAAACCGGGATAGTAATAATCAACAGTTTAGCACTTGTGGAAACTTTGATGGATGCGAATCGGTACGCAGATATGTTTCAGTCTATGATTGCTAGATCTGCCAACCTTGATGTTTTATCTGGTGGAATCGGTGGAACAAGAAATGGTGCTATACATTTGATGCATACTGAGGTTCAATTGCTTTCACCACTAGTCCCGGTTCGTCAAGTGAGAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTGTTGAGATTGGTCATGATCCTTCTAATGCACAACCATTCATAAGCTGTAGAAGACTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCACTGGGAGTATGATGAGAGTGTTGTTCACCAACTCTATCGTCCGTTGCTTATTTCTGGTTTTGGATTTGGCGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATCCTCATGTCCTCTTCCATCTCAAACGATGATCACACGGCATTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGTATGACCAACAACTTCTGTTCTGGGGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTCCAAATGGGGACTCTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGCGAGCCTCCCGGTATCGTGCTTAGCGCTGCAACATCTGTTTGGATGCCAGTTTCACGACAAAGACTGTTTGATTTTCTGCGTGATGAAAGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCCATGCAAGAGATGGTTCACATTGCCAAAGGTCAAGGGCAAGGAAACTGCGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAAACTTGGATGGATACATCTTGCTCGGTGGTGGTGTATGCACCAGTTGACGGGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCAATTGTTCCTGATGGTAATGATCCCTCTGGCTACGGCATGTCAAATGGTACTTTACAGAAAGGTGGTGCTGGCGATGGTGGTGGAAGTTTGCTCACAGTCGGATTCCAAATTCTGGTGAATAGTCTTCCAACTGCCAAGCTCACAATGGAGTCAGTTGATACTGTGAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA

Protein sequence

>Msa0039490

MGFESVNSSCKVARLATDISIPFSSSMQNPSSFFSTQRKMEGQSEIGLTGDSLDTSLLGRMREDEYESRSGSDNFDLEGLSGDDQDGGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPSSNSGLELGIGRNGFGGGSSSLGNPLPMGLDLGDGRSMPGISSPMGLMGSSSDVQLERSALIDLALAAMDELLKMAQTDSPVWIKGLDGERDILNQEEYGRLISSCIGPKPAGFVAEATRETGIVIINSLALVETLMDANRYADMFQSMIARSANLDVLSGGIGGTRNGAIHLMHTEVQLLSPLVPVRQVRILRFCKQHAEGVWAVVDVSVEIGHDPSNAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGFGFGAHRWIATLQRQCEGLAILMSSSISNDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNDPSGYGMSNGTLQKGGAGDGGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA*