AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485260 MtrunA17_Chr4g0063641 94.860 214 11 0 1 214 27 240 6.38e-143 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 198 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGGATTGATTGTAATTT+TGG 0.076933 3_4:+2850519 None:intergenic
GGTACTCAACCTTTGTTAAT+TGG 0.136734 3_4:-2851972 Msa0485260:CDS
CTCTTCTCGCTTTCCGATTT+CGG 0.144990 3_4:+2847814 Msa0485270:CDS
TACACAGGTTTCAATTTAAT+TGG 0.158448 3_4:-2850862 Msa0485260:three_prime_UTR
CATGCATTTGCCATGGAAAA+TGG 0.163938 3_4:-2847550 Msa0485260:three_prime_UTR
TTATTGAATTTGAAGGTTTA+AGG 0.203855 3_4:-2847517 Msa0485260:three_prime_UTR
AATTGTCTCCCAGAGAAATT+TGG 0.218886 3_4:+2853527 None:intergenic
GAGTTTCGCTGCTGCGGTTA+TGG 0.222904 3_4:+2847999 Msa0485270:CDS
AGTTTCGCTGCTGCGGTTAT+GGG 0.222941 3_4:+2848000 Msa0485270:CDS
TGATCCGAATAAATTATAAA+TGG 0.228084 3_4:+2850973 None:intergenic
CCTTTGTTAATTGGGAATTC+TGG 0.230535 3_4:-2851963 Msa0485260:CDS
TAAGTCTTTAGGATTCTTTC+GGG 0.232754 3_4:+2851652 None:intergenic
GCAATGAAGTTTCTGAAGTT+TGG 0.235789 3_4:-2851209 Msa0485260:three_prime_UTR
TTCTTTAGCACTGCTATTAC+TGG 0.243352 3_4:-2850426 Msa0485260:three_prime_UTR
AAATTGCTTACAAAGATTAT+AGG 0.254616 3_4:+2851868 None:intergenic
AATATTGTCAGATTGCTTAA+AGG 0.264562 3_4:+2847862 Msa0485270:CDS
GGTTATGGGGTTTCGTGTTT+TGG 0.267174 3_4:+2848014 Msa0485270:CDS
CTAAGTCTTTAGGATTCTTT+CGG 0.270688 3_4:+2851651 None:intergenic
GAAGGTTTAAGGTTTAATTT+AGG 0.279702 3_4:-2847506 Msa0485260:three_prime_UTR
TGATATTTCGGTTACTGTTC+AGG 0.293998 3_4:+2847903 Msa0485270:CDS
ATATTCTTATGCGGTTTATC+AGG 0.302785 3_4:-2847844 Msa0485260:three_prime_UTR
GTGGCCAAACTTCCCTATAT+TGG 0.305280 3_4:-2851941 Msa0485260:CDS
AAGAAATGAATTTGCCCTTC+AGG 0.307249 3_4:+2851892 None:intergenic
TGGATCTGTGAAATGGTTCT+AGG 0.307654 3_4:-2847469 Msa0485260:three_prime_UTR
CCCTATATTGGTTTACTTCA+AGG 0.313846 3_4:-2851929 Msa0485260:CDS
AATATGTTTGGATTCCATAT+TGG 0.315442 3_4:-2850931 Msa0485260:three_prime_UTR
AACTTCAGAAACTTCATTGC+AGG 0.317204 3_4:+2851212 None:intergenic
ATCAGGTAAGTTTCCGAAAT+CGG 0.318319 3_4:-2847827 Msa0485260:three_prime_UTR
TTCTGTAGATAAAATATGTT+TGG 0.320571 3_4:-2850943 Msa0485260:three_prime_UTR
TTGAAAAGCTATTTCTTCAT+TGG 0.325740 3_4:-2850228 Msa0485260:three_prime_UTR
GGAAGATGAGCGTTTGTTGC+AGG 0.326266 3_4:+2850403 Msa0485270:CDS
TCAATTTAATTGGAAACTTA+AGG 0.329224 3_4:-2850852 Msa0485260:three_prime_UTR
TGATTCTTGTGTAGATCCTT+CGG 0.329408 3_4:+2850775 None:intergenic
AATTGCTTACAAAGATTATA+GGG 0.330363 3_4:+2851869 None:intergenic
GTACCCATTTATAATTTATT+CGG 0.330409 3_4:-2850977 Msa0485260:three_prime_UTR
ACTTCATTGCAGGATTTCTA+TGG 0.331601 3_4:+2851222 None:intergenic
TTGATATGTCATAACCAATA+TGG 0.332657 3_4:+2850917 None:intergenic
GACACTCGGTGTTGGTCAAC+TGG 0.332988 3_4:-2850601 Msa0485260:three_prime_UTR
TTCTCTGGGAGACAATTTAC+AGG 0.336896 3_4:-2853521 Msa0485260:CDS
TCAACGACGCTGGCGACAAT+AGG 0.337227 3_4:-2847772 Msa0485260:three_prime_UTR
TTTAGGTGAGAATTGAGATT+TGG 0.337827 3_4:-2847489 Msa0485260:three_prime_UTR
TCTGCTCAAAATAGATGTTC+AGG 0.339107 3_4:+2850301 Msa0485270:CDS
TAAACCAATATAGGGAAGTT+TGG 0.343713 3_4:+2851937 None:intergenic
GCAGTACCTGTTGGTCTCCT+TGG 0.344082 3_4:-2852729 Msa0485260:CDS
GAAGCAGCTTTATGACATTA+TGG 0.345088 3_4:-2851706 Msa0485260:CDS
AGCCACACATCTAAGTCTTT+AGG 0.345519 3_4:+2851641 None:intergenic
CCTCAGGAATCAATGTTTCT+AGG 0.346101 3_4:-2851614 Msa0485260:three_prime_UTR
TCCTTGAAGTAAACCAATAT+AGG 0.349436 3_4:+2851928 None:intergenic
GTACTCAACCTTTGTTAATT+GGG 0.349552 3_4:-2851971 Msa0485260:CDS
CAATGAAGTTTCTGAAGTTT+GGG 0.358137 3_4:-2851208 Msa0485260:three_prime_UTR
GTGTTCAATCCAAATTTCTC+TGG 0.360105 3_4:-2853536 Msa0485260:CDS
ATATTGTCAGATTGCTTAAA+GGG 0.365014 3_4:+2847863 Msa0485270:CDS
TGATGCACACTGCATCAAAA+AGG 0.366988 3_4:+2850502 Msa0485270:CDS
TTTCTAGGCGGTGATTGTTT+TGG 0.368585 3_4:-2851599 Msa0485260:intron
TGAAGTATAAGAAGAGTAAG+AGG 0.371661 3_4:-2847639 Msa0485260:three_prime_UTR
AGATGTGTGGCTTGAGCCTC+AGG 0.378300 3_4:-2851630 Msa0485260:three_prime_UTR
GGATGGGTTGGTTGTTGATG+TGG 0.379859 3_4:+2847957 Msa0485270:CDS
CTATGTTGACAGTTTGGAAT+TGG 0.384641 3_4:-2853159 Msa0485260:intron
GATTGAGTTAGAGAAGAAGT+TGG 0.386192 3_4:-2847713 Msa0485260:three_prime_UTR
AGGCGATCAGCTCGATGAAT+CGG 0.386401 3_4:-2852106 Msa0485260:CDS
GGAATTCTGTAGTCTGGTTC+AGG 0.390135 3_4:+2853096 None:intergenic
TCAGAATACAAAAGCTTCTC+AGG 0.390663 3_4:+2850893 None:intergenic
AAGGTGATGAAATTAGGGTT+AGG 0.392061 3_4:-2847685 Msa0485260:three_prime_UTR
CCTTGAAGTAAACCAATATA+GGG 0.395980 3_4:+2851929 None:intergenic
TGTCTTTGATGATGAAGCTC+TGG 0.396290 3_4:-2852573 Msa0485260:intron
AAATTAGGGTTAGGGTTTGA+AGG 0.397564 3_4:-2847676 Msa0485260:three_prime_UTR
GATTCTTGTGTAGATCCTTC+GGG 0.397814 3_4:+2850776 None:intergenic
TAGGGTTTGAAGGAGGGGTG+AGG 0.398824 3_4:-2847666 Msa0485260:three_prime_UTR
TTTGTTTGAGGCTGCCGCTT+CGG 0.399926 3_4:+2848113 Msa0485270:CDS
ACCGGTATAAAGTAAATAAC+TGG 0.402159 3_4:+2851017 None:intergenic
TGAACAGTAACCGAAATATC+AGG 0.412579 3_4:-2847901 Msa0485260:three_prime_UTR
TGTTGATGTGGGTGCTAATG+TGG 0.415117 3_4:+2847969 Msa0485270:CDS
TTACCAGTTGGTTGGTAGGC+TGG 0.420445 3_4:+2850160 Msa0485270:intron
GATGGGTTGGTTGTTGATGT+GGG 0.421349 3_4:+2847958 Msa0485270:CDS
GTGGAGATTATTGAATTTGA+AGG 0.422866 3_4:-2847524 Msa0485260:three_prime_UTR
AACAGTGCGGTTTCTGCCAC+TGG 0.425550 3_4:+2850185 Msa0485270:CDS
GCACTGCATGGAAGGTAAAC+AGG 0.427401 3_4:+2851146 None:intergenic
TAACTACCAAGTAGTACAAC+TGG 0.429214 3_4:+2853075 None:intergenic
AGGTGATGAAATTAGGGTTA+GGG 0.429375 3_4:-2847684 Msa0485260:three_prime_UTR
TCAGTTATGCAGATTCTAGA+TGG 0.431045 3_4:+2850543 None:intergenic
GTGATTTAGGAGGTAAAGAT+AGG 0.432339 3_4:-2852126 Msa0485260:intron
TCCAGTTATTTACTTTATAC+CGG 0.439308 3_4:-2851018 Msa0485260:three_prime_UTR
TAGGGTTAGGGTTTGAAGGA+GGG 0.446845 3_4:-2847672 Msa0485260:three_prime_UTR
CAACGACGCTGGCGACAATA+GGG 0.447619 3_4:-2847771 Msa0485260:three_prime_UTR
CGACAATAGGGTGAGATTGT+GGG 0.455532 3_4:-2847759 Msa0485260:three_prime_UTR
ATTGTCGCCAGCGTCGTTGA+AGG 0.456958 3_4:+2847775 Msa0485270:CDS
TACCTTCCATGCAGTGCTCT+CGG 0.458343 3_4:-2851140 Msa0485260:three_prime_UTR
GCTAAGAGTGAGGGGATGGA+TGG 0.464274 3_4:+2847940 Msa0485270:CDS
GATCCGAATAAATTATAAAT+GGG 0.465855 3_4:+2850974 None:intergenic
GGCGATCAGCTCGATGAATC+GGG 0.466712 3_4:-2852105 Msa0485260:CDS
CAAAATAGATGTTCAGGGCT+GGG 0.467724 3_4:+2850307 Msa0485270:CDS
GTCTTAATTTACCAGTTGGT+TGG 0.474899 3_4:+2850152 Msa0485270:intron
TTCTGCCACTGGAGCAAAGT+TGG 0.474980 3_4:+2850196 Msa0485270:CDS
ACAACTGGAATTCTGTAGTC+TGG 0.477410 3_4:+2853090 None:intergenic
AGCAGTCCAAGGAGACCAAC+AGG 0.482425 3_4:+2852723 None:intergenic
TAATTTACCAGTTGGTTGGT+AGG 0.482653 3_4:+2850156 Msa0485270:intron
AGAAGCACACGCTCTGATGC+TGG 0.483079 3_4:-2850281 Msa0485260:three_prime_UTR
GTGTGCATCAGTGCCATGTT+GGG 0.483129 3_4:-2850489 Msa0485260:three_prime_UTR
TCAAAATAGATGTTCAGGGC+TGG 0.486002 3_4:+2850306 Msa0485270:CDS
AGAATTCCAGTTGTACTACT+TGG 0.490268 3_4:-2853081 Msa0485260:intron
TTAGGGTTAGGGTTTGAAGG+AGG 0.492085 3_4:-2847673 Msa0485260:three_prime_UTR
GACATTATGGTGGAAAGAGC+TGG 0.494867 3_4:-2851693 Msa0485260:CDS
TAACAACAAAACGGTTTCCA+TGG 0.495913 3_4:+2853495 None:intergenic
GAAGAAGAAGTGCATGTGAC+TGG 0.495943 3_4:-2847447 Msa0485260:three_prime_UTR
TGAGATTTGGATCTGTGAAA+TGG 0.496512 3_4:-2847476 Msa0485260:three_prime_UTR
TCAAGTACGCACTATTCCAC+TGG 0.497286 3_4:+2850247 Msa0485270:CDS
GGATTTGGTTACTTTGTTTG+AGG 0.498554 3_4:+2848101 Msa0485270:CDS
GCGACAATAGGGTGAGATTG+TGG 0.498962 3_4:-2847760 Msa0485260:three_prime_UTR
AGGGTTAGGGTTTGAAGGAG+GGG 0.499348 3_4:-2847671 Msa0485260:three_prime_UTR
GAAAGCTAAGAGTGAGGGGA+TGG 0.499446 3_4:+2847936 Msa0485270:CDS
TTCAAAGTTACTCTCAAGGA+AGG 0.504924 3_4:+2850352 Msa0485270:CDS
CGGAAAGCGAGAAGAGAAAC+GGG 0.506073 3_4:-2847807 Msa0485260:three_prime_UTR
GAAATGTAATGCATCTTGAA+TGG 0.506585 3_4:-2850749 Msa0485260:three_prime_UTR
GTTTCAGGGAAAGAAAATGT+TGG 0.508459 3_4:-2853599 Msa0485260:intron
ATTCTGAATATCTGATACAC+AGG 0.508829 3_4:-2850877 Msa0485260:three_prime_UTR
ATTGTACTATCAGGTATAGC+TGG 0.511072 3_4:-2852783 Msa0485260:intron
TGTTCAATCCAAATTTCTCT+GGG 0.513258 3_4:-2853535 Msa0485260:CDS
CCAGAGAGTTAACAACAAAA+CGG 0.514177 3_4:+2853486 None:intergenic
GTTGATGTGGGTGCTAATGT+GGG 0.518850 3_4:+2847970 Msa0485270:CDS
CTCAACAATTTGCTGACACT+CGG 0.519209 3_4:-2850615 Msa0485260:three_prime_UTR
GAGTGAGGGGATGGATGGGT+TGG 0.523266 3_4:+2847945 Msa0485270:CDS
TGTCCAGCCTACCAACCAAC+TGG 0.524455 3_4:-2850163 Msa0485260:intron
TCTTCCTCGTATATGAGATA+AGG 0.525577 3_4:-2850386 Msa0485260:three_prime_UTR
ATGGAAACAGTTGAGATAGC+TGG 0.526211 3_4:+2850674 None:intergenic
CGTATATGAGATAAGGAGCT+TGG 0.527326 3_4:-2850379 Msa0485260:three_prime_UTR
TTGTTGTTCTTTGTAGCTAG+TGG 0.527531 3_4:-2851185 Msa0485260:three_prime_UTR
AATTGATTGTGGATAAATGA+TGG 0.527939 3_4:+2850655 None:intergenic
ATCCGAGAGCACTGCATGGA+AGG 0.531342 3_4:+2851138 None:intergenic
GGGATTTGATGCAATCGAAA+GGG 0.531578 3_4:-2847738 Msa0485260:three_prime_UTR
GAAAATGTTGGATACTTGAG+TGG 0.531856 3_4:-2853587 Msa0485260:CDS
CTGCTCAAAATAGATGTTCA+GGG 0.535597 3_4:+2850302 Msa0485270:CDS
TCGGAAAGCGAGAAGAGAAA+CGG 0.540337 3_4:-2847808 Msa0485260:three_prime_UTR
CTAAGAGTGAGGGGATGGAT+GGG 0.542239 3_4:+2847941 Msa0485270:CDS
AAATGCCAACTTTGCTCCAG+TGG 0.542923 3_4:-2850201 Msa0485260:three_prime_UTR
CTAGTGCCTGCAGTACCTGT+TGG 0.544253 3_4:-2852738 Msa0485260:CDS
GCAAATTGGCTTACTTTGGG+AGG 0.544934 3_4:+2853740 None:intergenic
TTCTGCAAATTCTCCAACAC+AGG 0.549660 3_4:-2848045 Msa0485260:three_prime_UTR
TCGAGACTTTCTCCGTAGTG+TGG 0.549802 3_4:+2850451 Msa0485270:CDS
CGAGACTTTCTCCGTAGTGT+GGG 0.555020 3_4:+2850452 Msa0485270:CDS
GGAGGGAAGAAAACGGTGTA+CGG 0.558028 3_4:+2853758 None:intergenic
GTTGACAGTTTGGAATTGGA+AGG 0.558079 3_4:-2853155 Msa0485260:intron
AGGAGACCAACAGGTACTGC+AGG 0.559075 3_4:+2852732 None:intergenic
GTTTCGCTGCTGCGGTTATG+GGG 0.559743 3_4:+2848001 Msa0485270:CDS
CTGTGAAATCGCATTTGCAC+CGG 0.559903 3_4:+2850999 None:intergenic
AAACACAAACAAAGCCTGAA+GGG 0.561088 3_4:-2851906 Msa0485260:CDS
TTGTTAATTGGGAATTCTGG+TGG 0.561972 3_4:-2851960 Msa0485260:CDS
ACGAACACCTTCAACGACGC+TGG 0.565621 3_4:-2847782 Msa0485260:three_prime_UTR
CAAATTGGCTTACTTTGGGA+GGG 0.566767 3_4:+2853741 None:intergenic
ATTTGCAGAAGTTATGTGAA+GGG 0.566967 3_4:+2848058 Msa0485270:CDS
AGTGTGCATCAGTGCCATGT+TGG 0.570483 3_4:-2850490 Msa0485260:three_prime_UTR
TTTGGCGTTTGAGCCTGTGT+TGG 0.573077 3_4:+2848032 Msa0485270:CDS
GAGCTTCAAAGTTACTCTCA+AGG 0.573311 3_4:+2850348 Msa0485270:CDS
GGAAAGTGTTGATTCAAACT+AGG 0.574065 3_4:-2850580 Msa0485260:three_prime_UTR
ACAATTCGATGAATTGATTG+TGG 0.575337 3_4:+2850644 None:intergenic
GACAATAGGGTGAGATTGTG+GGG 0.577496 3_4:-2847758 Msa0485260:three_prime_UTR
ACAGTTTGGAATTGGAAGGA+AGG 0.577632 3_4:-2853151 Msa0485260:intron
TACTTTGGGAGGGAAGAAAA+CGG 0.582207 3_4:+2853751 None:intergenic
CTTGAGAAAGCTAAGAGTGA+GGG 0.582466 3_4:+2847931 Msa0485270:CDS
TACTATCAGGTATAGCTGGT+GGG 0.582502 3_4:-2852779 Msa0485260:intron
TTGTTCCACCACACAAAACA+AGG 0.582560 3_4:-2853826 Msa0485260:five_prime_UTR
AGACAATTTACAGGAAGCCA+TGG 0.585653 3_4:-2853512 Msa0485260:CDS
TTTGCAGAAGTTATGTGAAG+GGG 0.586435 3_4:+2848059 Msa0485270:CDS
GCTGCCGCTTCGGATCATCT+TGG 0.587262 3_4:+2848123 Msa0485270:CDS
GAAACACAAACAAAGCCTGA+AGG 0.594329 3_4:-2851907 Msa0485260:CDS
AATCTGACAATATTCTTATG+CGG 0.594837 3_4:-2847853 Msa0485260:three_prime_UTR
GGGGATTTGATGCAATCGAA+AGG 0.598736 3_4:-2847739 Msa0485260:three_prime_UTR
AATTTGCTGACACTCGGTGT+TGG 0.601745 3_4:-2850609 Msa0485260:three_prime_UTR
AATTTGCAGAAGTTATGTGA+AGG 0.603276 3_4:+2848057 Msa0485270:CDS
GTACTATCAGGTATAGCTGG+TGG 0.603408 3_4:-2852780 Msa0485260:intron
AATGGCGAGTTTCGCTGCTG+CGG 0.603842 3_4:+2847993 Msa0485270:CDS
TATCATGATTGCACCCAACA+TGG 0.604242 3_4:+2850476 Msa0485270:CDS
TGTGGGTGCTAATGTGGGAA+TGG 0.612050 3_4:+2847975 Msa0485270:CDS
TGGGAATATCATGTTCTCAA+AGG 0.613591 3_4:+2850326 Msa0485270:CDS
AAGAAATCTAACCTTATGAA+CGG 0.619120 3_4:-2848154 Msa0485260:intron
GCTGGAATCACTTCATCCAG+TGG 0.621278 3_4:-2850263 Msa0485260:three_prime_UTR
GCTTGAGAAAGCTAAGAGTG+AGG 0.622574 3_4:+2847930 Msa0485270:CDS
CCAGAATTCCCAATTAACAA+AGG 0.623077 3_4:+2851963 None:intergenic
TCAAAGTTACTCTCAAGGAA+GGG 0.627168 3_4:+2850353 Msa0485270:CDS
ACGGTGTACGGACAACAAAG+TGG 0.631015 3_4:+2853770 None:intergenic
GCAGCTTTATGACATTATGG+TGG 0.632890 3_4:-2851703 Msa0485260:CDS
TATTTCGGTTACTGTTCAGG+AGG 0.635656 3_4:+2847906 Msa0485270:CDS
GGACCAACAAAAGCAGTCCA+AGG 0.638338 3_4:+2852712 None:intergenic
AAACATCCGAGAGCACTGCA+TGG 0.641439 3_4:+2851134 None:intergenic
ATCCTAAAGACTTAGATGTG+TGG 0.648427 3_4:-2851643 Msa0485260:exon
GGATTTGATGCAATCGAAAG+GGG 0.653814 3_4:-2847737 Msa0485260:three_prime_UTR
CTTTGGGGAGAGTAAACGAG+AGG 0.661821 3_4:-2847587 Msa0485260:three_prime_UTR
AATCATGATAACCCACACTA+CGG 0.665119 3_4:-2850463 Msa0485260:three_prime_UTR
CCTAGAAACATTGATTCCTG+AGG 0.666908 3_4:+2851614 None:intergenic
TTGAGAAAGCTAAGAGTGAG+GGG 0.670921 3_4:+2847932 Msa0485270:CDS
TGATGTTGTTAAGCAGCTTG+CGG 0.678546 3_4:-2850712 Msa0485260:three_prime_UTR
TTTGGGGAGAGTAAACGAGA+GGG 0.678894 3_4:-2847586 Msa0485260:three_prime_UTR
AAGTCTTTAGGATTCTTTCG+GGG 0.680426 3_4:+2851653 None:intergenic
ACAACCTCACTAAAACCCGA+AGG 0.681683 3_4:-2850791 Msa0485260:three_prime_UTR
TGGTAGGCTGGACAACAGTG+CGG 0.687351 3_4:+2850172 Msa0485270:CDS
AGCTCCTTATCTCATATACG+AGG 0.689074 3_4:+2850382 Msa0485270:CDS
TTGCCATGGAAAATGGACAG+TGG 0.689136 3_4:-2847543 Msa0485260:three_prime_UTR
GTTACCAAGATGATCCGAAG+CGG 0.699117 3_4:-2848127 Msa0485260:three_prime_UTR
CAGGAATCAATGTTTCTAGG+CGG 0.734686 3_4:-2851611 Msa0485260:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGTATAATAATATACAA+TGG - chr3_4:2849932-2849951 Msa0485260:intron 10.0%
!!! TCAATTTTTTCCAATTATTA+TGG - chr3_4:2847960-2847979 Msa0485260:three_prime_UTR 15.0%
!!! TTTTAAGTCATCAATATTTT+AGG + chr3_4:2848430-2848449 Msa0485270:intron 15.0%
!!! GTTTTTAGAAAAATAAATGA+TGG + chr3_4:2848759-2848778 Msa0485270:intron 15.0%
!! TAATACAAAACACATTATAA+TGG + chr3_4:2849046-2849065 Msa0485270:intron 15.0%
!! GTAAAGTAAATATACAAAAT+AGG - chr3_4:2849395-2849414 Msa0485260:intron 15.0%
!!! TTAAGATTTTTTAGAATAAC+TGG - chr3_4:2849786-2849805 Msa0485260:intron 15.0%
!! GTATGTTTATTTAAATGAAA+TGG + chr3_4:2851227-2851246 None:intergenic 15.0%
!!! TTTTTGGTTTATATAGTTTA+TGG + chr3_4:2853017-2853036 None:intergenic 15.0%
!!! TTTAGTTTGCTATTAATTGT+GGG - chr3_4:2847591-2847610 Msa0485260:three_prime_UTR 20.0%
!!! TTCTCTTTTCACATAATTTT+AGG - chr3_4:2848184-2848203 Msa0485260:intron 20.0%
!! TTTATTAATCTGCTTATACA+AGG + chr3_4:2848404-2848423 Msa0485270:intron 20.0%
!! AAAGAAACTGTAATTAAGAA+AGG - chr3_4:2848557-2848576 Msa0485260:intron 20.0%
!!! ATAATTAGAGAAAAAGTACT+TGG + chr3_4:2848602-2848621 Msa0485270:intron 20.0%
!!! ATTTGTTTTTTTATTTTCGC+AGG - chr3_4:2848620-2848639 Msa0485260:intron 20.0%
!! TTAGAAAGAAAATACTACTA+TGG + chr3_4:2848725-2848744 Msa0485270:intron 20.0%
!! ATTGATTAGACTATAACAAT+AGG - chr3_4:2849211-2849230 Msa0485260:intron 20.0%
!! AAAACATGTTTATATGTTGT+AGG - chr3_4:2849239-2849258 Msa0485260:intron 20.0%
!! AATTGCTTACAAAGATTATA+GGG + chr3_4:2849366-2849385 Msa0485270:intron 20.0%
!! AAATTGCTTACAAAGATTAT+AGG + chr3_4:2849367-2849386 Msa0485270:intron 20.0%
!! GTACCCATTTATAATTTATT+CGG - chr3_4:2850255-2850274 Msa0485260:three_prime_UTR 20.0%
!! GATCCGAATAAATTATAAAT+GGG + chr3_4:2850261-2850280 Msa0485270:CDS 20.0%
!! TGATCCGAATAAATTATAAA+TGG + chr3_4:2850262-2850281 Msa0485270:CDS 20.0%
!! TTCTGTAGATAAAATATGTT+TGG - chr3_4:2850289-2850308 Msa0485260:three_prime_UTR 20.0%
!! TCAATTTAATTGGAAACTTA+AGG - chr3_4:2850380-2850399 Msa0485260:three_prime_UTR 20.0%
!!! AAAAGGATTGATTGTAATTT+TGG + chr3_4:2850716-2850735 None:intergenic 20.0%
!!! GTTATTTTCCTTTTCTTTTT+GGG + chr3_4:2851105-2851124 None:intergenic 20.0%
!!! TGTTATTTTCCTTTTCTTTT+TGG + chr3_4:2851106-2851125 None:intergenic 20.0%
!! ATTTAAATGAAATGGTTATG+AGG + chr3_4:2851219-2851238 None:intergenic 20.0%
!! TAAATAAACATACACTTTCA+TGG - chr3_4:2851234-2851253 Msa0485260:three_prime_UTR 20.0%
!!! AACCAAAAATAGAACAATTT+TGG - chr3_4:2851293-2851312 Msa0485260:intron 20.0%
!!! AACCAAAATTGTTCTATTTT+TGG + chr3_4:2851298-2851317 None:intergenic 20.0%
!!! TTATTTTTAAGTATCCTCTT+AGG + chr3_4:2851433-2851452 None:intergenic 20.0%
!!! ATTTTGTGTATACTCATAAT+CGG + chr3_4:2851582-2851601 None:intergenic 20.0%
!!! ACATGCATTTAAAATAGAAT+AGG + chr3_4:2851920-2851939 None:intergenic 20.0%
!!! ATTTTACGTATAATCTGTAA+GGG + chr3_4:2852023-2852042 None:intergenic 20.0%
!! AAGTTATTAACATGCTAAAT+AGG + chr3_4:2852454-2852473 None:intergenic 20.0%
!!! TCTTTAGTTTATTTTAGAGA+AGG + chr3_4:2852518-2852537 None:intergenic 20.0%
!! TTGTATGTGAATGATATAAT+TGG + chr3_4:2852609-2852628 None:intergenic 20.0%
!!! GCTTGAATTTAATTGATTTT+TGG + chr3_4:2853033-2853052 None:intergenic 20.0%
!!! TTTTTAAGGTGATGAAATTA+GGG - chr3_4:2853542-2853561 Msa0485260:CDS 20.0%
!! TTATTGAATTTGAAGGTTTA+AGG - chr3_4:2853715-2853734 Msa0485260:intron 20.0%
!! TTTTGTGTATCAGAAACAAA+TGG - chr3_4:2847436-2847455 Msa0485260:three_prime_UTR 25.0%
!!! CTTTAGTTTGCTATTAATTG+TGG - chr3_4:2847590-2847609 Msa0485260:three_prime_UTR 25.0%
!!! TGATGTGATTTTTTTGTTTC+AGG - chr3_4:2847618-2847637 Msa0485260:three_prime_UTR 25.0%
!!! GATGTGATTTTTTTGTTTCA+GGG - chr3_4:2847619-2847638 Msa0485260:three_prime_UTR 25.0%
!!! GCTCTGTGTTATTTTTTTTA+TGG - chr3_4:2847796-2847815 Msa0485260:three_prime_UTR 25.0%
! TAGATGAATCAAAATCTTGA+GGG - chr3_4:2848326-2848345 Msa0485260:intron 25.0%
! TGACTTAAAATTGTACTATC+AGG - chr3_4:2848440-2848459 Msa0485260:intron 25.0%
! TTTCTTTACTGATAATTACC+TGG + chr3_4:2848544-2848563 Msa0485270:intron 25.0%
! TGAACTTATGCAATATTAGA+AGG + chr3_4:2848853-2848872 Msa0485270:intron 25.0%
!!! GTTTAGTCTTTTTGAATCAA+AGG + chr3_4:2848890-2848909 Msa0485270:intron 25.0%
! GATGAAGTTATAGATTAGAA+TGG + chr3_4:2848995-2849014 Msa0485270:intron 25.0%
! TTACATGCAAAATGTGATTT+AGG - chr3_4:2849093-2849112 Msa0485260:intron 25.0%
! ATCAATGCTGAAACAAAAAT+AGG + chr3_4:2849197-2849216 Msa0485270:intron 25.0%
!!! ATGAAGCGTTTTTATTAACA+TGG - chr3_4:2849868-2849887 Msa0485260:intron 25.0%
! TCCAGTTATTTACTTTATAC+CGG - chr3_4:2850214-2850233 Msa0485260:three_prime_UTR 25.0%
! AATATGTTTGGATTCCATAT+TGG - chr3_4:2850301-2850320 Msa0485260:three_prime_UTR 25.0%
! TTGATATGTCATAACCAATA+TGG + chr3_4:2850318-2850337 Msa0485270:CDS 25.0%
! TACACAGGTTTCAATTTAAT+TGG - chr3_4:2850370-2850389 Msa0485260:three_prime_UTR 25.0%
!!! GTATACAAGCTTTTAATTGT+AGG + chr3_4:2850423-2850442 Msa0485270:CDS 25.0%
! AATTGATTGTGGATAAATGA+TGG + chr3_4:2850580-2850599 None:intergenic 25.0%
!!! TTGAAAAGCTATTTCTTCAT+TGG - chr3_4:2851004-2851023 Msa0485260:three_prime_UTR 25.0%
! AATTAAGACCCAAAAAGAAA+AGG - chr3_4:2851094-2851113 Msa0485260:three_prime_UTR 25.0%
! CATATGATTATATGAATGAC+AGG - chr3_4:2851130-2851149 Msa0485260:three_prime_UTR 25.0%
! TTGTGCATTATAAGTTTCTA+TGG - chr3_4:2851348-2851367 Msa0485260:intron 25.0%
! TGTGCATTATAAGTTTCTAT+GGG - chr3_4:2851349-2851368 Msa0485260:intron 25.0%
!!! TAGGATTTTAGGATTGAAAT+CGG + chr3_4:2851533-2851552 None:intergenic 25.0%
! AAGTATAATCGCAAAATTCT+AGG + chr3_4:2851552-2851571 None:intergenic 25.0%
!! TTTTACGTATAATCTGTAAG+GGG + chr3_4:2852022-2852041 None:intergenic 25.0%
!! GATTTTACGTATAATCTGTA+AGG + chr3_4:2852024-2852043 None:intergenic 25.0%
!! TTATACACATTAATTGGTCT+CGG + chr3_4:2852163-2852182 None:intergenic 25.0%
! ACGGATTTATACACATTAAT+TGG + chr3_4:2852169-2852188 None:intergenic 25.0%
!!! ATAACATAAAAGTATCTCCT+AGG - chr3_4:2852277-2852296 Msa0485260:intron 25.0%
!!! TAACATAAAAGTATCTCCTA+GGG - chr3_4:2852278-2852297 Msa0485260:intron 25.0%
! TGTGAATGATATAATTGGTT+AGG + chr3_4:2852604-2852623 None:intergenic 25.0%
!!! AGTTTTATGCTAATAACACT+TGG + chr3_4:2852695-2852714 None:intergenic 25.0%
! AATAGATAGATAGCATTCTA+TGG - chr3_4:2852731-2852750 Msa0485260:CDS 25.0%
!! CTTCAACTTTAAGAAAATCA+AGG - chr3_4:2852815-2852834 Msa0485260:intron 25.0%
!! GTTTAGACTTTAGAAAGTAT+AGG + chr3_4:2852884-2852903 None:intergenic 25.0%
! AGGAATTATAGTAGAAACTT+AGG + chr3_4:2852969-2852988 None:intergenic 25.0%
! AAGAAATCTAACCTTATGAA+CGG - chr3_4:2853078-2853097 Msa0485260:intron 25.0%
!!! GGTTTATTTTAATAGAGTTG+CGG + chr3_4:2853155-2853174 None:intergenic 25.0%
!!! TTTTAGGAAACCTGATATTT+CGG + chr3_4:2853344-2853363 None:intergenic 25.0%
! ATATTGTCAGATTGCTTAAA+GGG + chr3_4:2853372-2853391 None:intergenic 25.0%
! AATATTGTCAGATTGCTTAA+AGG + chr3_4:2853373-2853392 None:intergenic 25.0%
! AATCTGACAATATTCTTATG+CGG - chr3_4:2853379-2853398 Msa0485260:intron 25.0%
!!! GTTTTTAAGGTGATGAAATT+AGG - chr3_4:2853541-2853560 Msa0485260:CDS 25.0%
! AAGAGTAAAAAAAGAAGCTT+TGG - chr3_4:2853628-2853647 Msa0485260:intron 25.0%
! AGAGTAAAAAAAGAAGCTTT+GGG - chr3_4:2853629-2853648 Msa0485260:intron 25.0%
!! GAAGGTTTAAGGTTTAATTT+AGG - chr3_4:2853726-2853745 Msa0485260:intron 25.0%
AATGGAAGTTACATGCAAAT+TGG + chr3_4:2847509-2847528 None:intergenic 30.0%
TGTTCAATCCAAATTTCTCT+GGG - chr3_4:2847697-2847716 Msa0485260:three_prime_UTR 30.0%
GTTAATATTAGTGACGTGAA+CGG - chr3_4:2847992-2848011 Msa0485260:three_prime_UTR 30.0%
GAATTTCTATGTTGACAGTT+TGG - chr3_4:2848067-2848086 Msa0485260:three_prime_UTR 30.0%
! GTCTATTGCCTTAATTTTGT+TGG - chr3_4:2848291-2848310 Msa0485260:intron 30.0%
CAAAGGATCCAACAAAATTA+AGG + chr3_4:2848302-2848321 Msa0485270:intron 30.0%
! CTTAATTTTGTTGGATCCTT+TGG - chr3_4:2848300-2848319 Msa0485260:intron 30.0%
CTAGATGAATCAAAATCTTG+AGG - chr3_4:2848325-2848344 Msa0485260:intron 30.0%
GGAAATGCAAAAAAGACTTA+AGG + chr3_4:2848383-2848402 Msa0485270:intron 30.0%
TGTTTCTCAGATATCATGAA+GGG + chr3_4:2848781-2848800 Msa0485270:intron 30.0%
ATATTAGAAGGAGAAAGATG+CGG + chr3_4:2848841-2848860 Msa0485270:intron 30.0%
AGTGCAGAACTATATAACAT+AGG + chr3_4:2848912-2848931 Msa0485270:intron 30.0%
ACTGAAAAGTGGATGATTAT+TGG + chr3_4:2848970-2848989 Msa0485270:intron 30.0%
TTAGAATGGTAACTGAAAAG+TGG + chr3_4:2848981-2849000 Msa0485270:intron 30.0%
GTACTCAACCTTTGTTAATT+GGG - chr3_4:2849261-2849280 Msa0485260:intron 30.0%
TAAACCAATATAGGGAAGTT+TGG + chr3_4:2849298-2849317 Msa0485270:intron 30.0%
CCTTGAAGTAAACCAATATA+GGG + chr3_4:2849306-2849325 Msa0485270:intron 30.0%
TCCTTGAAGTAAACCAATAT+AGG + chr3_4:2849307-2849326 Msa0485270:intron 30.0%
!! TTTTCTTCATTGTTTCTTGC+TGG - chr3_4:2849479-2849498 Msa0485260:intron 30.0%
!!! TTATTTTTTGCCAAGCAGAA+TGG - chr3_4:2849503-2849522 Msa0485260:intron 30.0%
!!! TATTTTTTGCCAAGCAGAAT+GGG - chr3_4:2849504-2849523 Msa0485260:intron 30.0%
!! TAAGTCTTTAGGATTCTTTC+GGG + chr3_4:2849583-2849602 Msa0485270:intron 30.0%
!! CTAAGTCTTTAGGATTCTTT+CGG + chr3_4:2849584-2849603 Msa0485270:intron 30.0%
CTCTTGTGGTACAAAATAAA+GGG + chr3_4:2849762-2849781 Msa0485270:intron 30.0%
!!! CTTTATTTTGTACCACAAGA+GGG - chr3_4:2849761-2849780 Msa0485260:intron 30.0%
AATAACTGGTTATGTCCTAT+TGG - chr3_4:2849800-2849819 Msa0485260:intron 30.0%
TGATACAACAGCAATGATAT+AGG + chr3_4:2849902-2849921 Msa0485270:intron 30.0%
!! CAATGAAGTTTCTGAAGTTT+GGG - chr3_4:2850024-2850043 Msa0485260:intron 30.0%
ACCGGTATAAAGTAAATAAC+TGG + chr3_4:2850218-2850237 Msa0485270:CDS 30.0%
ATTCTGAATATCTGATACAC+AGG - chr3_4:2850355-2850374 Msa0485260:three_prime_UTR 30.0%
GAAATGTAATGCATCTTGAA+TGG - chr3_4:2850483-2850502 Msa0485260:three_prime_UTR 30.0%
ACAATTCGATGAATTGATTG+TGG + chr3_4:2850591-2850610 None:intergenic 30.0%
TAGTAGCATTGCATGATAAA+TGG - chr3_4:2851156-2851175 Msa0485260:three_prime_UTR 30.0%
GAGGTGGAAATTTATAAATG+AGG + chr3_4:2851200-2851219 None:intergenic 30.0%
TAAATGAAATGGTTATGAGG+TGG + chr3_4:2851216-2851235 None:intergenic 30.0%
AACATACACTTTCATGGAAT+CGG - chr3_4:2851240-2851259 Msa0485260:three_prime_UTR 30.0%
GAAACTTATAATGCACAAGA+TGG + chr3_4:2851346-2851365 None:intergenic 30.0%
TAAAAAAACACTTGCCTAAG+AGG - chr3_4:2851470-2851489 Msa0485260:intron 30.0%
!!! AGGATTTTAGGATTGAAATC+GGG + chr3_4:2851532-2851551 None:intergenic 30.0%
!!! TCGCAAAATTCTAGGATTTT+AGG + chr3_4:2851544-2851563 None:intergenic 30.0%
! TACACAAAATCCCAATTTTG+TGG - chr3_4:2851592-2851611 Msa0485260:intron 30.0%
ACACAAGATTCCACAAAATT+GGG + chr3_4:2851605-2851624 None:intergenic 30.0%
TACACAAGATTCCACAAAAT+TGG + chr3_4:2851606-2851625 None:intergenic 30.0%
AGAATCGTTACATTAATCGT+AGG + chr3_4:2851980-2851999 None:intergenic 30.0%
TTTACGTATAATCTGTAAGG+GGG + chr3_4:2852021-2852040 None:intergenic 30.0%
CTGCTTTCATTGTAAAAACT+GGG + chr3_4:2852079-2852098 None:intergenic 30.0%
TCTGCTTTCATTGTAAAAAC+TGG + chr3_4:2852080-2852099 None:intergenic 30.0%
! AATCCGTATATTTGTTAAGC+AGG - chr3_4:2852182-2852201 Msa0485260:intron 30.0%
! ATCCGTATATTTGTTAAGCA+GGG - chr3_4:2852183-2852202 Msa0485260:intron 30.0%
TTCCCTGCTTAACAAATATA+CGG + chr3_4:2852188-2852207 None:intergenic 30.0%
TTTGTATGGAGCTAATATTC+AGG + chr3_4:2852414-2852433 None:intergenic 30.0%
GAATATTAGCTCCATACAAA+TGG - chr3_4:2852414-2852433 Msa0485260:intron 30.0%
CGAGTATAATAAGCAATTAG+AGG + chr3_4:2852557-2852576 None:intergenic 30.0%
CTTATTATACTCGAACTAGA+CGG - chr3_4:2852564-2852583 Msa0485260:intron 30.0%
TGCAAAGTAGGATTAAGATA+TGG - chr3_4:2852761-2852780 Msa0485260:CDS 30.0%
GTGAATGAAATTGTGAAATC+GGG + chr3_4:2852850-2852869 None:intergenic 30.0%
GGTGAATGAAATTGTGAAAT+CGG + chr3_4:2852851-2852870 None:intergenic 30.0%
TTGTGAATTGAAATGTAGTG+AGG + chr3_4:2852989-2853008 None:intergenic 30.0%
! TTTTAATAGAGTTGCGGATT+TGG + chr3_4:2853149-2853168 None:intergenic 30.0%
ATTTGCAGAAGTTATGTGAA+GGG + chr3_4:2853177-2853196 None:intergenic 30.0%
AATTTGCAGAAGTTATGTGA+AGG + chr3_4:2853178-2853197 None:intergenic 30.0%
ATATTCTTATGCGGTTTATC+AGG - chr3_4:2853388-2853407 Msa0485260:intron 30.0%
!!! AGAGAAGAAGTTGGTTTTTA+AGG - chr3_4:2853528-2853547 Msa0485260:CDS 30.0%
TGAAGTATAAGAAGAGTAAG+AGG - chr3_4:2853593-2853612 Msa0485260:CDS 30.0%
GAGTAAAAAAAGAAGCTTTG+GGG - chr3_4:2853630-2853649 Msa0485260:intron 30.0%
GTGGAGATTATTGAATTTGA+AGG - chr3_4:2853708-2853727 Msa0485260:intron 30.0%
TTTAGGTGAGAATTGAGATT+TGG - chr3_4:2853743-2853762 Msa0485260:intron 30.0%
!!! ATCTATCACCTTGTTTTGTG+TGG + chr3_4:2847417-2847436 None:intergenic 35.0%
! CATGCAAATTGGCTTACTTT+GGG + chr3_4:2847498-2847517 None:intergenic 35.0%
! ACATGCAAATTGGCTTACTT+TGG + chr3_4:2847499-2847518 None:intergenic 35.0%
GTTTCAGGGAAAGAAAATGT+TGG - chr3_4:2847633-2847652 Msa0485260:three_prime_UTR 35.0%
GAAAATGTTGGATACTTGAG+TGG - chr3_4:2847645-2847664 Msa0485260:three_prime_UTR 35.0%
GTGTTCAATCCAAATTTCTC+TGG - chr3_4:2847696-2847715 Msa0485260:three_prime_UTR 35.0%
AATTGTCTCCCAGAGAAATT+TGG + chr3_4:2847708-2847727 Msa0485270:CDS 35.0%
TAACAACAAAACGGTTTCCA+TGG + chr3_4:2847740-2847759 Msa0485270:CDS 35.0%
CCAGAGAGTTAACAACAAAA+CGG + chr3_4:2847749-2847768 Msa0485270:CDS 35.0%
CTAAATGTAACCATGTGTGT+CGG + chr3_4:2847936-2847955 Msa0485270:CDS 35.0%
! CTATGTTGACAGTTTGGAAT+TGG - chr3_4:2848073-2848092 Msa0485260:three_prime_UTR 35.0%
AGAATTCCAGTTGTACTACT+TGG - chr3_4:2848151-2848170 Msa0485260:intron 35.0%
TAACTACCAAGTAGTACAAC+TGG + chr3_4:2848160-2848179 Msa0485270:intron 35.0%
GGCAATAGACAGTTAACAAA+GGG + chr3_4:2848281-2848300 Msa0485270:intron 35.0%
AGGCAATAGACAGTTAACAA+AGG + chr3_4:2848282-2848301 Msa0485270:intron 35.0%
TTTGATTCATCTAGCACCAA+AGG + chr3_4:2848319-2848338 Msa0485270:intron 35.0%
ATTGTACTATCAGGTATAGC+TGG - chr3_4:2848449-2848468 Msa0485260:intron 35.0%
AAACAAGAAAGTTCTTGGAG+AGG + chr3_4:2848700-2848719 Msa0485270:intron 35.0%
TGGACAAACAAGAAAGTTCT+TGG + chr3_4:2848705-2848724 Msa0485270:intron 35.0%
! CTGTTTCTCAGATATCATGA+AGG + chr3_4:2848782-2848801 Msa0485270:intron 35.0%
CATGCAAAATGTGATTTAGG+AGG - chr3_4:2849096-2849115 Msa0485260:intron 35.0%
GTGATTTAGGAGGTAAAGAT+AGG - chr3_4:2849106-2849125 Msa0485260:intron 35.0%
GGTACTCAACCTTTGTTAAT+TGG - chr3_4:2849260-2849279 Msa0485260:intron 35.0%
CCAGAATTCCCAATTAACAA+AGG + chr3_4:2849272-2849291 Msa0485270:intron 35.0%
CCTTTGTTAATTGGGAATTC+TGG - chr3_4:2849269-2849288 Msa0485260:intron 35.0%
TTGTTAATTGGGAATTCTGG+TGG - chr3_4:2849272-2849291 Msa0485260:intron 35.0%
!! CCCTATATTGGTTTACTTCA+AGG - chr3_4:2849303-2849322 Msa0485260:intron 35.0%
AAACACAAACAAAGCCTGAA+GGG - chr3_4:2849326-2849345 Msa0485260:intron 35.0%
AAGAAATGAATTTGCCCTTC+AGG + chr3_4:2849343-2849362 Msa0485270:intron 35.0%
! GAAGCAGCTTTATGACATTA+TGG - chr3_4:2849526-2849545 Msa0485260:intron 35.0%
!! AAGTCTTTAGGATTCTTTCG+GGG + chr3_4:2849582-2849601 Msa0485270:intron 35.0%
ATCCTAAAGACTTAGATGTG+TGG - chr3_4:2849589-2849608 Msa0485260:intron 35.0%
!! GTTTTAGCATCAACCACTTT+AGG - chr3_4:2849687-2849706 Msa0485260:intron 35.0%
CAGAACTATTAACCTAAGCA+AGG + chr3_4:2849726-2849745 Msa0485270:intron 35.0%
! ACAAAATAAAGGGAAGGCAT+AGG + chr3_4:2849752-2849771 Msa0485270:intron 35.0%
TGTGGTACAAAATAAAGGGA+AGG + chr3_4:2849758-2849777 Msa0485270:intron 35.0%
CCTCTTGTGGTACAAAATAA+AGG + chr3_4:2849763-2849782 Msa0485270:intron 35.0%
!!! CCTTTATTTTGTACCACAAG+AGG - chr3_4:2849760-2849779 Msa0485260:intron 35.0%
AAAATCTTAAGACCCTCTTG+TGG + chr3_4:2849776-2849795 Msa0485270:intron 35.0%
CACAGCAGTAAAATTCCAAT+AGG + chr3_4:2849818-2849837 Msa0485270:intron 35.0%
! TCATTGCTGTTGTATCAGTT+TGG - chr3_4:2849905-2849924 Msa0485260:intron 35.0%
ACTTCATTGCAGGATTTCTA+TGG + chr3_4:2850013-2850032 Msa0485270:intron 35.0%
AACTTCAGAAACTTCATTGC+AGG + chr3_4:2850023-2850042 Msa0485270:intron 35.0%
!! GCAATGAAGTTTCTGAAGTT+TGG - chr3_4:2850023-2850042 Msa0485260:intron 35.0%
! TTGTTGTTCTTTGTAGCTAG+TGG - chr3_4:2850047-2850066 Msa0485260:intron 35.0%
TCAGAATACAAAAGCTTCTC+AGG + chr3_4:2850342-2850361 Msa0485270:CDS 35.0%
TGATTCTTGTGTAGATCCTT+CGG + chr3_4:2850460-2850479 Msa0485270:CDS 35.0%
!! GGAAAGTGTTGATTCAAACT+AGG - chr3_4:2850652-2850671 Msa0485260:three_prime_UTR 35.0%
TCAGTTATGCAGATTCTAGA+TGG + chr3_4:2850692-2850711 None:intergenic 35.0%
AATCATGATAACCCACACTA+CGG - chr3_4:2850769-2850788 Msa0485260:three_prime_UTR 35.0%
TTCTTTAGCACTGCTATTAC+TGG - chr3_4:2850806-2850825 Msa0485260:intron 35.0%
TCTTCCTCGTATATGAGATA+AGG - chr3_4:2850846-2850865 Msa0485260:three_prime_UTR 35.0%
TCAAAGTTACTCTCAAGGAA+GGG + chr3_4:2850882-2850901 None:intergenic 35.0%
TTCAAAGTTACTCTCAAGGA+AGG + chr3_4:2850883-2850902 None:intergenic 35.0%
TGGGAATATCATGTTCTCAA+AGG + chr3_4:2850909-2850928 None:intergenic 35.0%
CTGCTCAAAATAGATGTTCA+GGG + chr3_4:2850933-2850952 None:intergenic 35.0%
TCTGCTCAAAATAGATGTTC+AGG + chr3_4:2850934-2850953 None:intergenic 35.0%
TAATTTACCAGTTGGTTGGT+AGG + chr3_4:2851079-2851098 None:intergenic 35.0%
GTCTTAATTTACCAGTTGGT+TGG + chr3_4:2851083-2851102 None:intergenic 35.0%
TTGGGTCTTAATTTACCAGT+TGG + chr3_4:2851087-2851106 None:intergenic 35.0%
TGCATGATAAATGGTTTGAC+AGG - chr3_4:2851165-2851184 Msa0485260:three_prime_UTR 35.0%
ACATACACTTTCATGGAATC+GGG - chr3_4:2851241-2851260 Msa0485260:three_prime_UTR 35.0%
CTATGGGAAGTGATTATCAT+TGG - chr3_4:2851365-2851384 Msa0485260:intron 35.0%
GGAAGTGATTATCATTGGTA+TGG - chr3_4:2851370-2851389 Msa0485260:intron 35.0%
ACATAGACACTTTATGACCA+TGG - chr3_4:2851496-2851515 Msa0485260:intron 35.0%
TGTATACTCATAATCGGTGA+TGG + chr3_4:2851576-2851595 None:intergenic 35.0%
GGAATTGTTTCACAGAAAAG+TGG + chr3_4:2851631-2851650 None:intergenic 35.0%
GTGAAACAATTCCACGATTA+TGG - chr3_4:2851638-2851657 Msa0485260:three_prime_UTR 35.0%
!!! GCTGTTTTGTTTGAGACTTA+TGG - chr3_4:2851696-2851715 Msa0485260:CDS 35.0%
TTAGCAAGGTAGTCAAAATC+AGG + chr3_4:2852046-2852065 None:intergenic 35.0%
! GAGTTTTTACTTTCCTAGTC+AGG + chr3_4:2852325-2852344 None:intergenic 35.0%
ACGGATGTGGAAAAAAATAG+CGG - chr3_4:2852652-2852671 Msa0485260:intron 35.0%
TATGGTGAATCTTGCAAAGT+AGG - chr3_4:2852749-2852768 Msa0485260:CDS 35.0%
! GAAAGTATAGGTGTGGTTAA+TGG + chr3_4:2852872-2852891 None:intergenic 35.0%
! GACTTTAGAAAGTATAGGTG+TGG + chr3_4:2852879-2852898 None:intergenic 35.0%
TGGTAACATTACCGTTCATA+AGG + chr3_4:2853092-2853111 None:intergenic 35.0%
! GGATTTGGTTACTTTGTTTG+AGG + chr3_4:2853134-2853153 None:intergenic 35.0%
TTTGCAGAAGTTATGTGAAG+GGG + chr3_4:2853176-2853195 None:intergenic 35.0%
TGATATTTCGGTTACTGTTC+AGG + chr3_4:2853332-2853351 None:intergenic 35.0%
TGAACAGTAACCGAAATATC+AGG - chr3_4:2853331-2853350 Msa0485260:intron 35.0%
! TGCTTAAAGGGAAAGCTTTT+AGG + chr3_4:2853360-2853379 None:intergenic 35.0%
ATCAGGTAAGTTTCCGAAAT+CGG - chr3_4:2853405-2853424 Msa0485260:intron 35.0%
GATTGAGTTAGAGAAGAAGT+TGG - chr3_4:2853519-2853538 Msa0485260:CDS 35.0%
AAGGTGATGAAATTAGGGTT+AGG - chr3_4:2853547-2853566 Msa0485260:CDS 35.0%
AGGTGATGAAATTAGGGTTA+GGG - chr3_4:2853548-2853567 Msa0485260:CDS 35.0%
AAATTAGGGTTAGGGTTTGA+AGG - chr3_4:2853556-2853575 Msa0485260:CDS 35.0%
TGAGATTTGGATCTGTGAAA+TGG - chr3_4:2853756-2853775 Msa0485260:CDS 35.0%
TTGTTCCACCACACAAAACA+AGG - chr3_4:2847406-2847425 Msa0485260:three_prime_UTR 40.0%
!!! TATCACCTTGTTTTGTGTGG+TGG + chr3_4:2847414-2847433 None:intergenic 40.0%
! TACTTTGGGAGGGAAGAAAA+CGG + chr3_4:2847484-2847503 None:intergenic 40.0%
! CAAATTGGCTTACTTTGGGA+GGG + chr3_4:2847494-2847513 None:intergenic 40.0%
ACTTCCATTCATACGTGTTC+TGG - chr3_4:2847520-2847539 Msa0485260:three_prime_UTR 40.0%
TCTACCAGAACACGTATGAA+TGG + chr3_4:2847527-2847546 None:intergenic 40.0%
! TTCTCTGGGAGACAATTTAC+AGG - chr3_4:2847711-2847730 Msa0485260:three_prime_UTR 40.0%
AGACAATTTACAGGAAGCCA+TGG - chr3_4:2847720-2847739 Msa0485260:three_prime_UTR 40.0%
!!! CCGTTTTGTTGTTAACTCTC+TGG - chr3_4:2847746-2847765 Msa0485260:three_prime_UTR 40.0%
CCTATGTAGCACAGATACTT+CGG - chr3_4:2847891-2847910 Msa0485260:three_prime_UTR 40.0%
CACGTCTACGCCATAATAAT+TGG + chr3_4:2847973-2847992 Msa0485270:CDS 40.0%
TGTATGCGTCAATGCTTCAT+AGG - chr3_4:2848021-2848040 Msa0485260:three_prime_UTR 40.0%
! GTTGACAGTTTGGAATTGGA+AGG - chr3_4:2848077-2848096 Msa0485260:three_prime_UTR 40.0%
! ACAGTTTGGAATTGGAAGGA+AGG - chr3_4:2848081-2848100 Msa0485260:three_prime_UTR 40.0%
ACAACTGGAATTCTGTAGTC+TGG + chr3_4:2848145-2848164 Msa0485270:CDS 40.0%
AGCCAGTTACAATCTTACGA+AGG - chr3_4:2848225-2848244 Msa0485260:intron 40.0%
GTCCTTCGTAAGATTGTAAC+TGG + chr3_4:2848230-2848249 Msa0485270:intron 40.0%
TACTATCAGGTATAGCTGGT+GGG - chr3_4:2848453-2848472 Msa0485260:intron 40.0%
!! TGTCTTTGATGATGAAGCTC+TGG - chr3_4:2848659-2848678 Msa0485260:intron 40.0%
AAGTTCTTGGAGAGGTAAGA+AGG + chr3_4:2848692-2848711 Msa0485270:intron 40.0%
TTGTCGGTGGAAAAAATCGT+TGG - chr3_4:2849161-2849180 Msa0485260:intron 40.0%
GAAACACAAACAAAGCCTGA+AGG - chr3_4:2849325-2849344 Msa0485260:intron 40.0%
! GCAGCTTTATGACATTATGG+TGG - chr3_4:2849529-2849548 Msa0485260:intron 40.0%
AGCCACACATCTAAGTCTTT+AGG + chr3_4:2849594-2849613 Msa0485270:intron 40.0%
!! CCTAGAAACATTGATTCCTG+AGG + chr3_4:2849621-2849640 Msa0485270:intron 40.0%
CCTCAGGAATCAATGTTTCT+AGG - chr3_4:2849618-2849637 Msa0485260:intron 40.0%
!! CAGGAATCAATGTTTCTAGG+CGG - chr3_4:2849621-2849640 Msa0485260:intron 40.0%
! TTTCTAGGCGGTGATTGTTT+TGG - chr3_4:2849633-2849652 Msa0485260:intron 40.0%
ATCTCAGAAACAGCCTAAAG+TGG + chr3_4:2849703-2849722 Msa0485270:intron 40.0%
!! TGTTTCTGAGATCCTTGCTT+AGG - chr3_4:2849711-2849730 Msa0485260:intron 40.0%
!! TGCATGTGCTATTTGACATG+TGG + chr3_4:2849841-2849860 Msa0485270:intron 40.0%
GATTCTTGTGTAGATCCTTC+GGG + chr3_4:2850459-2850478 Msa0485270:CDS 40.0%
TGATGTTGTTAAGCAGCTTG+CGG - chr3_4:2850520-2850539 Msa0485260:three_prime_UTR 40.0%
ATGGAAACAGTTGAGATAGC+TGG + chr3_4:2850561-2850580 None:intergenic 40.0%
!! CTCAACAATTTGCTGACACT+CGG - chr3_4:2850617-2850636 Msa0485260:three_prime_UTR 40.0%
TGATGCACACTGCATCAAAA+AGG + chr3_4:2850733-2850752 None:intergenic 40.0%
TATCATGATTGCACCCAACA+TGG + chr3_4:2850759-2850778 None:intergenic 40.0%
AGCTCCTTATCTCATATACG+AGG + chr3_4:2850853-2850872 None:intergenic 40.0%
CGTATATGAGATAAGGAGCT+TGG - chr3_4:2850853-2850872 Msa0485260:three_prime_UTR 40.0%
GAGCTTCAAAGTTACTCTCA+AGG + chr3_4:2850887-2850906 None:intergenic 40.0%
CAAAATAGATGTTCAGGGCT+GGG + chr3_4:2850928-2850947 None:intergenic 40.0%
TCAAAATAGATGTTCAGGGC+TGG + chr3_4:2850929-2850948 None:intergenic 40.0%
CATACACTTTCATGGAATCG+GGG - chr3_4:2851242-2851261 Msa0485260:intron 40.0%
AGTGTCTATGTTCTCCTCTT+AGG + chr3_4:2851487-2851506 None:intergenic 40.0%
!!! AATCGGGATTTTGACTACCA+TGG + chr3_4:2851516-2851535 None:intergenic 40.0%
CAATTCCACGATTATGGTCA+CGG - chr3_4:2851644-2851663 Msa0485260:exon 40.0%
TGGGATGAATGTCATTAGCA+AGG + chr3_4:2852060-2852079 None:intergenic 40.0%
AGACCTGATTATCTCAGACA+GGG + chr3_4:2852218-2852237 None:intergenic 40.0%
CGGAAAGTTTGATCAACTTG+AGG + chr3_4:2852374-2852393 None:intergenic 40.0%
AGGATATTTGCGTACTCTTG+CGG + chr3_4:2852394-2852413 None:intergenic 40.0%
CATGCTAAATAGGATAGACC+CGG + chr3_4:2852444-2852463 None:intergenic 40.0%
AAATCTCGTGCAAGATTGCA+CGG - chr3_4:2852633-2852652 Msa0485260:intron 40.0%
CGGATGTGGAAAAAAATAGC+GGG - chr3_4:2852653-2852672 Msa0485260:intron 40.0%
AATGTCCAGCCAGAAATTCA+GGG - chr3_4:2852784-2852803 Msa0485260:intron 40.0%
GATGAATCACCCTGAATTTC+TGG + chr3_4:2852796-2852815 None:intergenic 40.0%
TTCTGCAAATTCTCCAACAC+AGG - chr3_4:2853187-2853206 Msa0485260:intron 40.0%
TTGAGAAAGCTAAGAGTGAG+GGG + chr3_4:2853303-2853322 None:intergenic 40.0%
CTTGAGAAAGCTAAGAGTGA+GGG + chr3_4:2853304-2853323 None:intergenic 40.0%
TATTTCGGTTACTGTTCAGG+AGG + chr3_4:2853329-2853348 None:intergenic 40.0%
GGGATTTGATGCAATCGAAA+GGG - chr3_4:2853494-2853513 Msa0485260:CDS 40.0%
GGATTTGATGCAATCGAAAG+GGG - chr3_4:2853495-2853514 Msa0485260:CDS 40.0%
! TCTTTTCCATGCATTTGCCA+TGG - chr3_4:2853675-2853694 Msa0485260:intron 40.0%
! CATTTTCCATGGCAAATGCA+TGG + chr3_4:2853684-2853703 None:intergenic 40.0%
CATGCATTTGCCATGGAAAA+TGG - chr3_4:2853682-2853701 Msa0485260:intron 40.0%
TGGATCTGTGAAATGGTTCT+AGG - chr3_4:2853763-2853782 Msa0485260:CDS 40.0%
! GCAAATTGGCTTACTTTGGG+AGG + chr3_4:2847495-2847514 None:intergenic 45.0%
TGTTGCAACCTCAAGTCAAG+TGG - chr3_4:2847774-2847793 Msa0485260:three_prime_UTR 45.0%
! CCGAAGTATCTGTGCTACAT+AGG + chr3_4:2847894-2847913 Msa0485270:CDS 45.0%
! GGAATTCTGTAGTCTGGTTC+AGG + chr3_4:2848139-2848158 Msa0485270:CDS 45.0%
GTACTATCAGGTATAGCTGG+TGG - chr3_4:2848452-2848471 Msa0485260:intron 45.0%
!! TCTCCTTGGACTGCTTTTGT+TGG - chr3_4:2848517-2848536 Msa0485260:intron 45.0%
! TCGGGTGAGAATGCTTTTGT+CGG - chr3_4:2849145-2849164 Msa0485260:intron 45.0%
GTGGCCAAACTTCCCTATAT+TGG - chr3_4:2849291-2849310 Msa0485260:intron 45.0%
! GACATTATGGTGGAAAGAGC+TGG - chr3_4:2849539-2849558 Msa0485260:intron 45.0%
CTGTGAAATCGCATTTGCAC+CGG + chr3_4:2850236-2850255 Msa0485270:CDS 45.0%
ACAACCTCACTAAAACCCGA+AGG - chr3_4:2850441-2850460 Msa0485260:three_prime_UTR 45.0%
!! AGATCCTTCGGGTTTTAGTG+AGG + chr3_4:2850448-2850467 Msa0485270:CDS 45.0%
!! AATTTGCTGACACTCGGTGT+TGG - chr3_4:2850623-2850642 Msa0485260:three_prime_UTR 45.0%
TCAAGTACGCACTATTCCAC+TGG + chr3_4:2850988-2851007 None:intergenic 45.0%
AAATGCCAACTTTGCTCCAG+TGG - chr3_4:2851031-2851050 Msa0485260:three_prime_UTR 45.0%
GCATTATCTGCTTGCCTAAG+AGG - chr3_4:2851416-2851435 Msa0485260:intron 45.0%
TACAATGAAAGCAGACGAGC+TGG - chr3_4:2852085-2852104 Msa0485260:CDS 45.0%
! ATTGGTCTCGGTCTTTCATC+TGG + chr3_4:2852151-2852170 None:intergenic 45.0%
GATTATCTCAGACAGGGCTA+TGG + chr3_4:2852212-2852231 None:intergenic 45.0%
! TAGCCCTGTCTGAGATAATC+AGG - chr3_4:2852212-2852231 Msa0485260:intron 45.0%
CAGACCTGATTATCTCAGAC+AGG + chr3_4:2852219-2852238 None:intergenic 45.0%
TTGAGAACAATCACGGCTGT+TGG + chr3_4:2852248-2852267 None:intergenic 45.0%
GAGCCAGTTGAGAACAATCA+CGG + chr3_4:2852255-2852274 None:intergenic 45.0%
! ATTCTGCTGTTAGCTTCCCT+AGG + chr3_4:2852297-2852316 None:intergenic 45.0%
AGCAGAATTGTCACCTGACT+AGG - chr3_4:2852309-2852328 Msa0485260:intron 45.0%
TAATAACACTTGGCACCTGG+CGG + chr3_4:2852685-2852704 None:intergenic 45.0%
TGCTAATAACACTTGGCACC+TGG + chr3_4:2852688-2852707 None:intergenic 45.0%
GAATGTCCAGCCAGAAATTC+AGG - chr3_4:2852783-2852802 Msa0485260:intron 45.0%
!! AATCACCCTGAATTTCTGGC+TGG + chr3_4:2852792-2852811 None:intergenic 45.0%
GTTACCAAGATGATCCGAAG+CGG - chr3_4:2853105-2853124 Msa0485260:CDS 45.0%
! GGTTATGGGGTTTCGTGTTT+TGG + chr3_4:2853221-2853240 None:intergenic 45.0%
GTTGATGTGGGTGCTAATGT+GGG + chr3_4:2853265-2853284 None:intergenic 45.0%
TGTTGATGTGGGTGCTAATG+TGG + chr3_4:2853266-2853285 None:intergenic 45.0%
!! GATGGGTTGGTTGTTGATGT+GGG + chr3_4:2853277-2853296 None:intergenic 45.0%
GCTTGAGAAAGCTAAGAGTG+AGG + chr3_4:2853305-2853324 None:intergenic 45.0%
CTCTTCTCGCTTTCCGATTT+CGG + chr3_4:2853421-2853440 None:intergenic 45.0%
TCGGAAAGCGAGAAGAGAAA+CGG - chr3_4:2853424-2853443 Msa0485260:intron 45.0%
CGACAATAGGGTGAGATTGT+GGG - chr3_4:2853473-2853492 Msa0485260:intron 45.0%
GACAATAGGGTGAGATTGTG+GGG - chr3_4:2853474-2853493 Msa0485260:intron 45.0%
GGGGATTTGATGCAATCGAA+AGG - chr3_4:2853493-2853512 Msa0485260:CDS 45.0%
TTAGGGTTAGGGTTTGAAGG+AGG - chr3_4:2853559-2853578 Msa0485260:CDS 45.0%
TAGGGTTAGGGTTTGAAGGA+GGG - chr3_4:2853560-2853579 Msa0485260:CDS 45.0%
TTTGGGGAGAGTAAACGAGA+GGG - chr3_4:2853646-2853665 Msa0485260:intron 45.0%
TTGCCATGGAAAATGGACAG+TGG - chr3_4:2853689-2853708 Msa0485260:intron 45.0%
! TCTCCACTGTCCATTTTCCA+TGG + chr3_4:2853695-2853714 None:intergenic 45.0%
! GAAGAAGAAGTGCATGTGAC+TGG - chr3_4:2853785-2853804 Msa0485260:exon 45.0%
ACGGTGTACGGACAACAAAG+TGG + chr3_4:2847465-2847484 None:intergenic 50.0%
GGAGGGAAGAAAACGGTGTA+CGG + chr3_4:2847477-2847496 None:intergenic 50.0%
! ACACAGAGCCACTTGACTTG+AGG + chr3_4:2847785-2847804 Msa0485270:CDS 50.0%
GGACCAACAAAAGCAGTCCA+AGG + chr3_4:2848523-2848542 Msa0485270:intron 50.0%
!! TGGACTGCTTTTGTTGGTCC+AGG - chr3_4:2848523-2848542 Msa0485260:intron 50.0%
AGGCGATCAGCTCGATGAAT+CGG - chr3_4:2849126-2849145 Msa0485260:intron 50.0%
! GGTGAGAATGCTTTTGTCGG+TGG - chr3_4:2849148-2849167 Msa0485260:intron 50.0%
AAGCTGCTTCCCATTCTGCT+TGG + chr3_4:2849516-2849535 Msa0485270:intron 50.0%
GCACTGCATGGAAGGTAAAC+AGG + chr3_4:2850089-2850108 Msa0485270:intron 50.0%
TACCTTCCATGCAGTGCTCT+CGG - chr3_4:2850092-2850111 Msa0485260:intron 50.0%
!! AAACATCCGAGAGCACTGCA+TGG + chr3_4:2850101-2850120 Msa0485270:intron 50.0%
AGTGTGCATCAGTGCCATGT+TGG - chr3_4:2850742-2850761 Msa0485260:three_prime_UTR 50.0%
GTGTGCATCAGTGCCATGTT+GGG - chr3_4:2850743-2850762 Msa0485260:three_prime_UTR 50.0%
CGAGACTTTCTCCGTAGTGT+GGG + chr3_4:2850783-2850802 None:intergenic 50.0%
TCGAGACTTTCTCCGTAGTG+TGG + chr3_4:2850784-2850803 None:intergenic 50.0%
! GGAAGATGAGCGTTTGTTGC+AGG + chr3_4:2850832-2850851 None:intergenic 50.0%
GCTGGAATCACTTCATCCAG+TGG - chr3_4:2850969-2850988 Msa0485260:three_prime_UTR 50.0%
TTCTGCCACTGGAGCAAAGT+TGG + chr3_4:2851039-2851058 None:intergenic 50.0%
!! TTACCAGTTGGTTGGTAGGC+TGG + chr3_4:2851075-2851094 None:intergenic 50.0%
TTCCACGATTATGGTCACGG+TGG - chr3_4:2851647-2851666 Msa0485260:exon 50.0%
!! CACGGTGGTGGAACTACAAA+AGG - chr3_4:2851662-2851681 Msa0485260:CDS 50.0%
!! GCTGGCTCTGTAATGAGTCA+TGG - chr3_4:2852103-2852122 Msa0485260:CDS 50.0%
CAGCCGTGATTGTTCTCAAC+TGG - chr3_4:2852249-2852268 Msa0485260:intron 50.0%
GCTCCATACAAATGGCACAC+CGG - chr3_4:2852422-2852441 Msa0485260:intron 50.0%
CTCCATACAAATGGCACACC+GGG - chr3_4:2852423-2852442 Msa0485260:intron 50.0%
! TTTGTTTGAGGCTGCCGCTT+CGG + chr3_4:2853122-2853141 None:intergenic 50.0%
TTTGGCGTTTGAGCCTGTGT+TGG + chr3_4:2853203-2853222 None:intergenic 50.0%
AGTTTCGCTGCTGCGGTTAT+GGG + chr3_4:2853235-2853254 None:intergenic 50.0%
TGTGGGTGCTAATGTGGGAA+TGG + chr3_4:2853260-2853279 None:intergenic 50.0%
!! GGATGGGTTGGTTGTTGATG+TGG + chr3_4:2853278-2853297 None:intergenic 50.0%
CTAAGAGTGAGGGGATGGAT+GGG + chr3_4:2853294-2853313 None:intergenic 50.0%
GAAAGCTAAGAGTGAGGGGA+TGG + chr3_4:2853299-2853318 None:intergenic 50.0%
CGGAAAGCGAGAAGAGAAAC+GGG - chr3_4:2853425-2853444 Msa0485260:intron 50.0%
GCGACAATAGGGTGAGATTG+TGG - chr3_4:2853472-2853491 Msa0485260:intron 50.0%
AGGGTTAGGGTTTGAAGGAG+GGG - chr3_4:2853561-2853580 Msa0485260:CDS 50.0%
! CTTTGGGGAGAGTAAACGAG+AGG - chr3_4:2853645-2853664 Msa0485260:intron 50.0%
GTGTCTGCTACCGACACACA+TGG - chr3_4:2847923-2847942 Msa0485260:three_prime_UTR 55.0%
CTAGTGCCTGCAGTACCTGT+TGG - chr3_4:2848494-2848513 Msa0485260:intron 55.0%
! AGGAGACCAACAGGTACTGC+AGG + chr3_4:2848503-2848522 Msa0485270:intron 55.0%
! GCAGTACCTGTTGGTCTCCT+TGG - chr3_4:2848503-2848522 Msa0485260:intron 55.0%
AGCAGTCCAAGGAGACCAAC+AGG + chr3_4:2848512-2848531 Msa0485270:intron 55.0%
GGCGATCAGCTCGATGAATC+GGG - chr3_4:2849127-2849146 Msa0485260:intron 55.0%
AGATGTGTGGCTTGAGCCTC+AGG - chr3_4:2849602-2849621 Msa0485260:intron 55.0%
!! ATCCGAGAGCACTGCATGGA+AGG + chr3_4:2850097-2850116 Msa0485270:intron 55.0%
!! GACACTCGGTGTTGGTCAAC+TGG - chr3_4:2850631-2850650 Msa0485260:three_prime_UTR 55.0%
! AGAAGCACACGCTCTGATGC+TGG - chr3_4:2850951-2850970 Msa0485260:three_prime_UTR 55.0%
AACAGTGCGGTTTCTGCCAC+TGG + chr3_4:2851050-2851069 None:intergenic 55.0%
TGGTAGGCTGGACAACAGTG+CGG + chr3_4:2851063-2851082 None:intergenic 55.0%
TGTCCAGCCTACCAACCAAC+TGG - chr3_4:2851069-2851088 Msa0485260:three_prime_UTR 55.0%
CACCACCGTGACCATAATCG+TGG + chr3_4:2851652-2851671 None:intergenic 55.0%
CACGATTATGGTCACGGTGG+TGG - chr3_4:2851650-2851669 Msa0485260:exon 55.0%
!! GACCCGGTGTGCCATTTGTA+TGG + chr3_4:2852428-2852447 None:intergenic 55.0%
CGTGCAAGATTGCACGGATG+TGG - chr3_4:2852639-2852658 Msa0485260:intron 55.0%
! AATAGCGGGAAAACACCGCC+AGG - chr3_4:2852667-2852686 Msa0485260:intron 55.0%
GTTTCGCTGCTGCGGTTATG+GGG + chr3_4:2853234-2853253 None:intergenic 55.0%
GAGTTTCGCTGCTGCGGTTA+TGG + chr3_4:2853236-2853255 None:intergenic 55.0%
AATGGCGAGTTTCGCTGCTG+CGG + chr3_4:2853242-2853261 None:intergenic 55.0%
GCTAAGAGTGAGGGGATGGA+TGG + chr3_4:2853295-2853314 None:intergenic 55.0%
ACGAACACCTTCAACGACGC+TGG - chr3_4:2853450-2853469 Msa0485260:intron 55.0%
ATTGTCGCCAGCGTCGTTGA+AGG + chr3_4:2853460-2853479 None:intergenic 55.0%
TCAACGACGCTGGCGACAAT+AGG - chr3_4:2853460-2853479 Msa0485260:intron 55.0%
CAACGACGCTGGCGACAATA+GGG - chr3_4:2853461-2853480 Msa0485260:intron 55.0%
TAGGGTTTGAAGGAGGGGTG+AGG - chr3_4:2853566-2853585 Msa0485260:CDS 55.0%
! GCTGCCGCTTCGGATCATCT+TGG + chr3_4:2853112-2853131 None:intergenic 60.0%
GAGTGAGGGGATGGATGGGT+TGG + chr3_4:2853290-2853309 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 2847401 2853853 2847401 ID=Msa0485260;Name=Msa0485260
chr3_4 mRNA 2847401 2853853 2847401 ID=Msa0485260-mRNA-1;Parent=Msa0485260;Name=Msa0485260-mRNA-1;_AED=0.13;_eAED=0.13;_QI=54|1|1|1|0.7|0.63|11|1897|214
chr3_4 exon 2847401 2848161 2847401 ID=Msa0485260-mRNA-1:exon:991;Parent=Msa0485260-mRNA-1
chr3_4 exon 2850164 2850813 2850164 ID=Msa0485260-mRNA-1:exon:990;Parent=Msa0485260-mRNA-1
chr3_4 exon 2850834 2851260 2850834 ID=Msa0485260-mRNA-1:exon:989;Parent=Msa0485260-mRNA-1
chr3_4 exon 2851600 2851733 2851600 ID=Msa0485260-mRNA-1:exon:988;Parent=Msa0485260-mRNA-1
chr3_4 exon 2851879 2851993 2851879 ID=Msa0485260-mRNA-1:exon:987;Parent=Msa0485260-mRNA-1
chr3_4 exon 2852069 2852139 2852069 ID=Msa0485260-mRNA-1:exon:986;Parent=Msa0485260-mRNA-1
chr3_4 exon 2852574 2852612 2852574 ID=Msa0485260-mRNA-1:exon:985;Parent=Msa0485260-mRNA-1
chr3_4 exon 2852710 2852792 2852710 ID=Msa0485260-mRNA-1:exon:984;Parent=Msa0485260-mRNA-1
chr3_4 exon 2853082 2853169 2853082 ID=Msa0485260-mRNA-1:exon:983;Parent=Msa0485260-mRNA-1
chr3_4 exon 2853487 2853614 2853487 ID=Msa0485260-mRNA-1:exon:982;Parent=Msa0485260-mRNA-1
chr3_4 exon 2853754 2853853 2853754 ID=Msa0485260-mRNA-1:exon:981;Parent=Msa0485260-mRNA-1
chr3_4 five_prime_UTR 2853800 2853853 2853800 ID=Msa0485260-mRNA-1:five_prime_utr;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2853754 2853799 2853754 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2853487 2853614 2853487 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2853082 2853169 2853082 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2852710 2852792 2852710 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2852574 2852612 2852574 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2852069 2852139 2852069 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2851879 2851993 2851879 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 CDS 2851659 2851733 2851659 ID=Msa0485260-mRNA-1:cds;Parent=Msa0485260-mRNA-1
chr3_4 three_prime_UTR 2851600 2851658 2851600 ID=Msa0485260-mRNA-1:three_prime_utr;Parent=Msa0485260-mRNA-1
chr3_4 three_prime_UTR 2850834 2851260 2850834 ID=Msa0485260-mRNA-1:three_prime_utr;Parent=Msa0485260-mRNA-1
chr3_4 three_prime_UTR 2850164 2850813 2850164 ID=Msa0485260-mRNA-1:three_prime_utr;Parent=Msa0485260-mRNA-1
chr3_4 three_prime_UTR 2847401 2848161 2847401 ID=Msa0485260-mRNA-1:three_prime_utr;Parent=Msa0485260-mRNA-1
Gene Sequence

>Msa0485260

ATGGCGACCACTTTGTTGTCCGTACACCGTTTTCTTCCCTCCCAAAGGAAAGAAAATGTTGGATACTTGAGTGGTTTCAAGAATTCATTGAGTGAAAGAGTTGTGTTCAATCCAAATTTCTCTGGGAGACAATTTACAGGAAGCCATGGAAACCGTTTTGTTGTTAACTCTCTGTTTGGAATTGGAAGGAAGGCGAAGAAGAGTATTGTCAGAGAGACTGTGATTCCTGAACCAGACTACAGAATTCCAGTTGTACTACTTGGTATAGCTGGTGGGTTAGTTTACACAGATAATCTAGTGCCTGCAGTACCTGTTGGTCTCCTTGGACTGCTTTTGTTGGTCCAGGCAACTAGAGTGAGATTTGTCTTTGATGATGAAGCTCTGGAGGTAAAGATAGGCGATCAGCTCGATGAATCGGGTGAGAATGCTTTTGTCGGTGGAAAAAATCGTTGGAAGTACTCAACCTTTGTTAATTGGGAATTCTGGTGGCCAAACTTCCCTATATTGGTTTACTTCAAGGAAACACAAACAAAGCCTGAAGGGCAAATTCATTTCTTCCCTATAATCTTTAATGGGAAGCAGCTTTATGACATTATGGTGGAAAGAGCTGGCTCTTCAAAAACTAGTGCCCCGAAAGAATCCTAA

Protein sequence

>Msa0485260

MATTLLSVHRFLPSQRKENVGYLSGFKNSLSERVVFNPNFSGRQFTGSHGNRFVVNSLFGIGRKAKKSIVRETVIPEPDYRIPVVLLGIAGGLVYTDNLVPAVPVGLLGLLLLVQATRVRFVFDDEALEVKIGDQLDESGENAFVGGKNRWKYSTFVNWEFWWPNFPILVYFKETQTKPEGQIHFFPIIFNGKQLYDIMVERAGSSKTSAPKES*