AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677030 MtrunA17_Chr4g0020791 98.084 261 5 0 1 261 287 547 0.0 538
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677030 AT3G47450.2 63.498 263 90 2 1 261 303 561 6.89e-119 351
Msa0677030 AT3G47450.1 62.738 263 92 2 1 261 303 561 1.58e-117 348
Msa0677030 AT4G10620.1 24.658 219 130 5 17 233 345 530 2.86e-12 66.6

Find 83 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAAATTTACAGAAATT+TGG 0.140350 4_4:-29117579 Msa0677030:three_prime_UTR
ATTCAAATTAATGCTTTCTT+TGG 0.211740 4_4:-29119664 Msa0677030:CDS
TAAAATGTTAAACATGTTTC+CGG 0.262455 4_4:+29119129 None:intergenic
GGAATTCAAAAGTACCATTT+TGG 0.269489 4_4:+29117763 None:intergenic
AAAGGTGCTTCGACAGTAAA+TGG 0.298977 4_4:-29119318 Msa0677030:CDS
GCTGTTCCTGGAACTACCTT+AGG 0.306684 4_4:-29119691 Msa0677030:CDS
AGCACCTTTGTTTGTATTGT+CGG 0.326011 4_4:+29119332 None:intergenic
AAGAAAGCATTAATTTGAAT+TGG 0.326794 4_4:+29119667 None:intergenic
CCAGTACAGTCTGCTGTTCC+TGG 0.333865 4_4:-29119703 Msa0677030:CDS
ATATGAATTGGCATCCTCTT+AGG 0.337943 4_4:+29119102 None:intergenic
CAAATTAATGCTTTCTTTGG+AGG 0.367521 4_4:-29119661 Msa0677030:CDS
CCATTACCAGTAGGCAAGGC+TGG 0.375446 4_4:-29117838 Msa0677030:CDS
AACATTGGTTGTTGAGAACT+TGG 0.383313 4_4:+29117654 None:intergenic
ACTGAGGGGCCTATCTTTCC+CGG 0.397514 4_4:-29119457 Msa0677030:intron
TGTTAGAATTGATGTCTTGA+AGG 0.398535 4_4:-29119262 Msa0677030:intron
ATTGGCCCTAAGGTAGTTCC+AGG 0.402457 4_4:+29119685 None:intergenic
GAAAAGAGAAGGCTGAGAAC+TGG 0.412977 4_4:-29118506 Msa0677030:CDS
CCAGCCTTGCCTACTGGTAA+TGG 0.414914 4_4:+29117838 None:intergenic
TCTGTGGGCACCATATGAAT+TGG 0.416048 4_4:+29119090 None:intergenic
CTTTGTGCAGCTGCAGCCAC+TGG 0.422464 4_4:+29119733 None:intergenic
TCATTATATGCCATTGTCTC+TGG 0.434822 4_4:+29119757 None:intergenic
GTGGCATCAGTTTGTTCAAA+AGG 0.443579 4_4:-29117601 Msa0677030:three_prime_UTR
AGCAGGAAATGAGACCAAAA+TGG 0.452527 4_4:-29117777 Msa0677030:CDS
GCTTGCGATATTGCTATATC+AGG 0.456295 4_4:-29117991 Msa0677030:CDS
AAGAACATACCGGGAAAGAT+AGG 0.460823 4_4:+29119448 None:intergenic
TCTGCCCCAGCCTTGCCTAC+TGG 0.461104 4_4:+29117832 None:intergenic
AATTCATCTGCTTTCTCTGT+GGG 0.471683 4_4:+29119075 None:intergenic
CTGTTCCTGGAACTACCTTA+GGG 0.475173 4_4:-29119690 Msa0677030:CDS
AAAATATTGAAAATCCATTC+AGG 0.478937 4_4:+29119295 None:intergenic
TAAGAGGATGCCAATTCATA+TGG 0.485520 4_4:-29119100 Msa0677030:CDS
TTATTGTCACAGAAAGAACT+TGG 0.486062 4_4:-29118552 Msa0677030:intron
ATTAATGCTTTCTTTGGAGG+AGG 0.494082 4_4:-29119658 Msa0677030:CDS
CATTACCAGTAGGCAAGGCT+GGG 0.495878 4_4:-29117837 Msa0677030:CDS
CCAGGAACAGCAGACTGTAC+TGG 0.496203 4_4:+29119703 None:intergenic
AGCAAGGGAGGATAGATCTT+CGG 0.499291 4_4:+29119491 None:intergenic
CTGTGGTGGAGATGAACTCC+TGG 0.504637 4_4:+29119534 None:intergenic
TCGACAGTAAATGGCCTGAA+TGG 0.506669 4_4:-29119309 Msa0677030:CDS
GATATTGCTATATCAGGTCT+AGG 0.507163 4_4:-29117985 Msa0677030:CDS
ATTAATAATACATTTAACAT+TGG 0.507875 4_4:+29117639 None:intergenic
TGCTCCTAAAAGCCGACTGA+GGG 0.509262 4_4:-29119472 Msa0677030:CDS
TAATGCTTTCTTTGGAGGAG+GGG 0.513509 4_4:-29119656 Msa0677030:intron
ATTAATTTGAATTGGCCCTA+AGG 0.514252 4_4:+29119675 None:intergenic
AGGATGGCTTTCTGTTGAGC+CGG 0.515806 4_4:-29117965 Msa0677030:CDS
ACAAAATGCAATAGACACTA+CGG 0.525515 4_4:-29117917 Msa0677030:CDS
TAGGCAAGGCTGGGGCAGAA+TGG 0.535765 4_4:-29117828 Msa0677030:CDS
CATCAGTTTGTTCAAAAGGA+AGG 0.537376 4_4:-29117597 Msa0677030:three_prime_UTR
CAAAATGCAATAGACACTAC+GGG 0.543069 4_4:-29117916 Msa0677030:CDS
GTTGTTGAGAACTTGGGTAG+AGG 0.548134 4_4:+29117661 None:intergenic
TTAATGCTTTCTTTGGAGGA+GGG 0.553702 4_4:-29119657 Msa0677030:CDS
AATCTGTGTGACCTACCAAC+CGG 0.555680 4_4:+29117946 None:intergenic
AGTGTTAATCCTCGGTAGCA+AGG 0.556137 4_4:+29117508 None:intergenic
TTTCTGTTGAGCCGGTTGGT+AGG 0.558950 4_4:-29117957 Msa0677030:CDS
TGGCTTTCTGTTGAGCCGGT+TGG 0.564204 4_4:-29117961 Msa0677030:CDS
AACAGGTTTGGGGACATGTA+CGG 0.568281 4_4:+29117879 None:intergenic
AGAATTAACAGATAAAGAGC+AGG 0.576236 4_4:-29117794 Msa0677030:CDS
GCCTTGCCTACTGGTAATGG+TGG 0.579377 4_4:+29117841 None:intergenic
ATATTTGATACCAGAGACAA+TGG 0.580022 4_4:-29119767 None:intergenic
TAAAATTTGAAGATACTGAA+AGG 0.581028 4_4:-29118452 Msa0677030:intron
GTGTTAATCCTCGGTAGCAA+GGG 0.588070 4_4:+29117509 None:intergenic
CCCACCAAGTGGAAAAGAGA+AGG 0.589412 4_4:-29118517 Msa0677030:CDS
AAATTCATCTGCTTTCTCTG+TGG 0.589837 4_4:+29119074 None:intergenic
GCCACCATTACCAGTAGGCA+AGG 0.591193 4_4:-29117842 Msa0677030:CDS
CAACTGCAGTTTGCCTGTGG+TGG 0.591370 4_4:+29119520 None:intergenic
GATATAGCAATATCGCAAGC+TGG 0.591658 4_4:+29117994 None:intergenic
AAATTTCACCCTTGCTACCG+AGG 0.594389 4_4:-29117517 None:intergenic
CAGGAGTTCATCTCCACCAC+AGG 0.599540 4_4:-29119533 Msa0677030:CDS
TTGCTATATCAGGTCTAGGA+TGG 0.601269 4_4:-29117981 Msa0677030:CDS
CAGAAACTGTATGACACTCC+AGG 0.601341 4_4:-29119552 Msa0677030:CDS
ACGAGGCCACCATTACCAGT+AGG 0.618637 4_4:-29117847 Msa0677030:CDS
TTGCTCCTAAAAGCCGACTG+AGG 0.619264 4_4:-29119473 Msa0677030:CDS
ACATTGGTTGTTGAGAACTT+GGG 0.620938 4_4:+29117655 None:intergenic
GGAAAGATAGGCCCCTCAGT+CGG 0.624772 4_4:+29119460 None:intergenic
CTTTCCGACAATACAAACAA+AGG 0.637415 4_4:-29119336 Msa0677030:CDS
GAGAAGGCTGAGAACTGGAG+AGG 0.643970 4_4:-29118501 Msa0677030:CDS
AGGGAGGATAGATCTTCGGA+AGG 0.666269 4_4:+29119495 None:intergenic
ATTACCAGTAGGCAAGGCTG+GGG 0.666863 4_4:-29117836 Msa0677030:CDS
GAACAACTGCAGTTTGCCTG+TGG 0.695137 4_4:+29119517 None:intergenic
AATGGCATATAATGATCCAG+TGG 0.696160 4_4:-29119749 Msa0677030:CDS
GCTCCTAAAAGCCGACTGAG+GGG 0.696766 4_4:-29119471 Msa0677030:CDS
TAATGTGACTAATACAACCG+TGG 0.704566 4_4:-29117620 Msa0677030:three_prime_UTR
GTTCTGCTAATCCCACCAAG+TGG 0.707656 4_4:-29118528 Msa0677030:CDS
AAAATGCAATAGACACTACG+GGG 0.732571 4_4:-29117915 Msa0677030:CDS
AAATGCAATAGACACTACGG+GGG 0.756248 4_4:-29117914 Msa0677030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAACATTTAATTTGTTATA+AGG - chr4_4:29118375-29118394 Msa0677030:intron 10.0%
!!! GAATTATTTTAAAGAAATTT+AGG - chr4_4:29119095-29119114 Msa0677030:CDS 10.0%
!!! ATTATTTTAAAGAAATTTAG+GGG - chr4_4:29119097-29119116 Msa0677030:CDS 10.0%
!! ATTAATAATACATTTAACAT+TGG + chr4_4:29119643-29119662 None:intergenic 10.0%
!!! TTAACATTTAATTTGTTATA+AGG - chr4_4:29118375-29118394 Msa0677030:intron 10.0%
!!! GAATTATTTTAAAGAAATTT+AGG - chr4_4:29119095-29119114 Msa0677030:CDS 10.0%
!!! ATTATTTTAAAGAAATTTAG+GGG - chr4_4:29119097-29119116 Msa0677030:CDS 10.0%
!! ATTAATAATACATTTAACAT+TGG + chr4_4:29119643-29119662 None:intergenic 10.0%
!! AAAAAAAAAAAAGAGTAAAC+AGG + chr4_4:29117683-29117702 None:intergenic 15.0%
!! ATGCTAATTAAATAGTTATT+TGG + chr4_4:29118618-29118637 None:intergenic 15.0%
!!! CATTTTTGAAAAAAAAGTAA+AGG - chr4_4:29118643-29118662 Msa0677030:intron 15.0%
!! TTCATTAATGAAATTATAGT+TGG - chr4_4:29119005-29119024 Msa0677030:intron 15.0%
!! TTATCTACTAATCATAATAT+TGG + chr4_4:29119232-29119251 None:intergenic 15.0%
!!! TTTTTCCTTTTACTTATTTT+TGG - chr4_4:29119551-29119570 Msa0677030:CDS 15.0%
!!! TTTTCCTTTTACTTATTTTT+GGG - chr4_4:29119552-29119571 Msa0677030:CDS 15.0%
!! AAAAAAAAAAAAGAGTAAAC+AGG + chr4_4:29117683-29117702 None:intergenic 15.0%
!! ATGCTAATTAAATAGTTATT+TGG + chr4_4:29118618-29118637 None:intergenic 15.0%
!!! CATTTTTGAAAAAAAAGTAA+AGG - chr4_4:29118643-29118662 Msa0677030:intron 15.0%
!! TTCATTAATGAAATTATAGT+TGG - chr4_4:29119005-29119024 Msa0677030:intron 15.0%
!! TTATCTACTAATCATAATAT+TGG + chr4_4:29119232-29119251 None:intergenic 15.0%
!!! TTTTTCCTTTTACTTATTTT+TGG - chr4_4:29119551-29119570 Msa0677030:CDS 15.0%
!!! TTTTCCTTTTACTTATTTTT+GGG - chr4_4:29119552-29119571 Msa0677030:CDS 15.0%
!!! AAGAAAGCATTAATTTGAAT+TGG + chr4_4:29117615-29117634 None:intergenic 20.0%
!! ATTCAAATTAATGCTTTCTT+TGG - chr4_4:29117615-29117634 Msa0677030:three_prime_UTR 20.0%
!! AAAATATTGAAAATCCATTC+AGG + chr4_4:29117987-29118006 None:intergenic 20.0%
!!! TGAATGGATTTTCAATATTT+TGG - chr4_4:29117986-29118005 Msa0677030:CDS 20.0%
!!! GAATGGATTTTCAATATTTT+GGG - chr4_4:29117987-29118006 Msa0677030:CDS 20.0%
!!! AATGGATTTTCAATATTTTG+GGG - chr4_4:29117988-29118007 Msa0677030:CDS 20.0%
!! TAAAATGTTAAACATGTTTC+CGG + chr4_4:29118153-29118172 None:intergenic 20.0%
!!! GAAACATGTTTAACATTTTA+CGG - chr4_4:29118153-29118172 Msa0677030:intron 20.0%
!!! AAACATGTTTAACATTTTAC+GGG - chr4_4:29118154-29118173 Msa0677030:intron 20.0%
!!! ACTTTTTTTATCCATAACAA+TGG + chr4_4:29118426-29118445 None:intergenic 20.0%
!! TGATATTCAATAATTATGAC+TGG - chr4_4:29118451-29118470 Msa0677030:intron 20.0%
!! TAAAATTTGAAGATACTGAA+AGG - chr4_4:29118827-29118846 Msa0677030:intron 20.0%
!!! TCATAGAAAAAAATCTGTTT+TGG - chr4_4:29118935-29118954 Msa0677030:intron 20.0%
!!! CATAGAAAAAAATCTGTTTT+GGG - chr4_4:29118936-29118955 Msa0677030:intron 20.0%
!! CAGACAAGAAAAAATTATAT+TGG - chr4_4:29118961-29118980 Msa0677030:intron 20.0%
!!! TTTCCTTTTACTTATTTTTG+GGG - chr4_4:29119553-29119572 Msa0677030:intron 20.0%
!!! AAGAAAGCATTAATTTGAAT+TGG + chr4_4:29117615-29117634 None:intergenic 20.0%
!! ATTCAAATTAATGCTTTCTT+TGG - chr4_4:29117615-29117634 Msa0677030:three_prime_UTR 20.0%
!! AAAATATTGAAAATCCATTC+AGG + chr4_4:29117987-29118006 None:intergenic 20.0%
!!! TGAATGGATTTTCAATATTT+TGG - chr4_4:29117986-29118005 Msa0677030:CDS 20.0%
!!! GAATGGATTTTCAATATTTT+GGG - chr4_4:29117987-29118006 Msa0677030:CDS 20.0%
!!! AATGGATTTTCAATATTTTG+GGG - chr4_4:29117988-29118007 Msa0677030:CDS 20.0%
!! TAAAATGTTAAACATGTTTC+CGG + chr4_4:29118153-29118172 None:intergenic 20.0%
!!! GAAACATGTTTAACATTTTA+CGG - chr4_4:29118153-29118172 Msa0677030:intron 20.0%
!!! AAACATGTTTAACATTTTAC+GGG - chr4_4:29118154-29118173 Msa0677030:intron 20.0%
!!! ACTTTTTTTATCCATAACAA+TGG + chr4_4:29118426-29118445 None:intergenic 20.0%
!! TGATATTCAATAATTATGAC+TGG - chr4_4:29118451-29118470 Msa0677030:intron 20.0%
!! TAAAATTTGAAGATACTGAA+AGG - chr4_4:29118827-29118846 Msa0677030:intron 20.0%
!!! TCATAGAAAAAAATCTGTTT+TGG - chr4_4:29118935-29118954 Msa0677030:intron 20.0%
!!! CATAGAAAAAAATCTGTTTT+GGG - chr4_4:29118936-29118955 Msa0677030:intron 20.0%
!! CAGACAAGAAAAAATTATAT+TGG - chr4_4:29118961-29118980 Msa0677030:intron 20.0%
!!! TTTCCTTTTACTTATTTTTG+GGG - chr4_4:29119553-29119572 Msa0677030:intron 20.0%
!!! TTATCAGTCTTGATGATTTT+AGG - chr4_4:29118122-29118141 Msa0677030:intron 25.0%
!! TATTTCATGTTTTCCAATTC+AGG - chr4_4:29118398-29118417 Msa0677030:intron 25.0%
!! ATTTCATGTTTTCCAATTCA+GGG - chr4_4:29118399-29118418 Msa0677030:intron 25.0%
!!! ACATATTACCCATTTTTTAG+TGG - chr4_4:29118474-29118493 Msa0677030:CDS 25.0%
!!! CATATTACCCATTTTTTAGT+GGG - chr4_4:29118475-29118494 Msa0677030:CDS 25.0%
! ATTCAATAATTATGGATGGA+TGG + chr4_4:29118507-29118526 None:intergenic 25.0%
! ATCCATCCATAATTATTGAA+TGG - chr4_4:29118506-29118525 Msa0677030:CDS 25.0%
! TACCATTCAATAATTATGGA+TGG + chr4_4:29118511-29118530 None:intergenic 25.0%
! CTCTTACCATTCAATAATTA+TGG + chr4_4:29118515-29118534 None:intergenic 25.0%
! TTCTTAATAGAGACCTAATT+TGG + chr4_4:29118859-29118878 None:intergenic 25.0%
! TAAAATGAAAGCTCTATCTA+GGG - chr4_4:29118881-29118900 Msa0677030:intron 25.0%
! GAATATCCATCCATTAATAA+TGG - chr4_4:29119035-29119054 Msa0677030:intron 25.0%
! TTCAATCCATCCATTATTAA+TGG + chr4_4:29119048-29119067 None:intergenic 25.0%
!!! TTAATAATGGATGGATTGAA+TGG - chr4_4:29119048-29119067 Msa0677030:intron 25.0%
!! GGATTTTATCTTTAACGAAT+TGG - chr4_4:29119069-29119088 Msa0677030:CDS 25.0%
! ATAAATGACTTGAGAATTAG+GGG + chr4_4:29119202-29119221 None:intergenic 25.0%
! CATAAATGACTTGAGAATTA+GGG + chr4_4:29119203-29119222 None:intergenic 25.0%
! AAGGAAAAACAAAGAATACA+CGG + chr4_4:29119540-29119559 None:intergenic 25.0%
!!! TTCCTTTTACTTATTTTTGG+GGG - chr4_4:29119554-29119573 Msa0677030:intron 25.0%
! GAAGGAAATTTACAGAAATT+TGG - chr4_4:29119700-29119719 Msa0677030:CDS 25.0%
!!! TTATCAGTCTTGATGATTTT+AGG - chr4_4:29118122-29118141 Msa0677030:intron 25.0%
!! TATTTCATGTTTTCCAATTC+AGG - chr4_4:29118398-29118417 Msa0677030:intron 25.0%
!! ATTTCATGTTTTCCAATTCA+GGG - chr4_4:29118399-29118418 Msa0677030:intron 25.0%
!!! ACATATTACCCATTTTTTAG+TGG - chr4_4:29118474-29118493 Msa0677030:CDS 25.0%
!!! CATATTACCCATTTTTTAGT+GGG - chr4_4:29118475-29118494 Msa0677030:CDS 25.0%
! ATTCAATAATTATGGATGGA+TGG + chr4_4:29118507-29118526 None:intergenic 25.0%
! ATCCATCCATAATTATTGAA+TGG - chr4_4:29118506-29118525 Msa0677030:CDS 25.0%
! TACCATTCAATAATTATGGA+TGG + chr4_4:29118511-29118530 None:intergenic 25.0%
! CTCTTACCATTCAATAATTA+TGG + chr4_4:29118515-29118534 None:intergenic 25.0%
! TTCTTAATAGAGACCTAATT+TGG + chr4_4:29118859-29118878 None:intergenic 25.0%
! TAAAATGAAAGCTCTATCTA+GGG - chr4_4:29118881-29118900 Msa0677030:intron 25.0%
! GAATATCCATCCATTAATAA+TGG - chr4_4:29119035-29119054 Msa0677030:intron 25.0%
! TTCAATCCATCCATTATTAA+TGG + chr4_4:29119048-29119067 None:intergenic 25.0%
!!! TTAATAATGGATGGATTGAA+TGG - chr4_4:29119048-29119067 Msa0677030:intron 25.0%
!! GGATTTTATCTTTAACGAAT+TGG - chr4_4:29119069-29119088 Msa0677030:CDS 25.0%
! ATAAATGACTTGAGAATTAG+GGG + chr4_4:29119202-29119221 None:intergenic 25.0%
! CATAAATGACTTGAGAATTA+GGG + chr4_4:29119203-29119222 None:intergenic 25.0%
! AAGGAAAAACAAAGAATACA+CGG + chr4_4:29119540-29119559 None:intergenic 25.0%
!!! TTCCTTTTACTTATTTTTGG+GGG - chr4_4:29119554-29119573 Msa0677030:intron 25.0%
! GAAGGAAATTTACAGAAATT+TGG - chr4_4:29119700-29119719 Msa0677030:CDS 25.0%
! ATTAATTTGAATTGGCCCTA+AGG + chr4_4:29117607-29117626 None:intergenic 30.0%
CAAATTAATGCTTTCTTTGG+AGG - chr4_4:29117618-29117637 Msa0677030:three_prime_UTR 30.0%
AGTATTTGAAAGAACATACC+GGG + chr4_4:29117843-29117862 None:intergenic 30.0%
CAGTATTTGAAAGAACATAC+CGG + chr4_4:29117844-29117863 None:intergenic 30.0%
TGTTAGAATTGATGTCTTGA+AGG - chr4_4:29118017-29118036 Msa0677030:intron 30.0%
ATCAAGACTGATAACTTCAA+GGG + chr4_4:29118116-29118135 None:intergenic 30.0%
! GAAAGCAGATGAATTTTATC+AGG - chr4_4:29118212-29118231 Msa0677030:intron 30.0%
TTATTGTCACAGAAAGAACT+TGG - chr4_4:29118727-29118746 Msa0677030:intron 30.0%
! TGAAAGGTATACTCCAAATT+AGG - chr4_4:29118843-29118862 Msa0677030:intron 30.0%
GTAAAATGAAAGCTCTATCT+AGG - chr4_4:29118880-29118899 Msa0677030:intron 30.0%
! ATCCATCCATTAATAATGGA+TGG - chr4_4:29119039-29119058 Msa0677030:intron 30.0%
ATCCATCCATTATTAATGGA+TGG + chr4_4:29119044-29119063 None:intergenic 30.0%
AGAAATTTAGGGGATTGTAA+TGG - chr4_4:29119107-29119126 Msa0677030:CDS 30.0%
GATTTAGATGGATATGGATT+TGG + chr4_4:29119166-29119185 None:intergenic 30.0%
ATGGATGATTTAGATGGATA+TGG + chr4_4:29119172-29119191 None:intergenic 30.0%
GCATAAATGACTTGAGAATT+AGG + chr4_4:29119204-29119223 None:intergenic 30.0%
ACAAAATGCAATAGACACTA+CGG - chr4_4:29119362-29119381 Msa0677030:intron 30.0%
TAAAAATCTCAACAGGTTTG+GGG + chr4_4:29119413-29119432 None:intergenic 30.0%
GTAAAAATCTCAACAGGTTT+GGG + chr4_4:29119414-29119433 None:intergenic 30.0%
AGAATTAACAGATAAAGAGC+AGG - chr4_4:29119485-29119504 Msa0677030:CDS 30.0%
!!! GGAATTCAAAAGTACCATTT+TGG + chr4_4:29119519-29119538 None:intergenic 30.0%
!!! TCCTTTTACTTATTTTTGGG+GGG - chr4_4:29119555-29119574 Msa0677030:intron 30.0%
! ATTAATTTGAATTGGCCCTA+AGG + chr4_4:29117607-29117626 None:intergenic 30.0%
CAAATTAATGCTTTCTTTGG+AGG - chr4_4:29117618-29117637 Msa0677030:three_prime_UTR 30.0%
AGTATTTGAAAGAACATACC+GGG + chr4_4:29117843-29117862 None:intergenic 30.0%
CAGTATTTGAAAGAACATAC+CGG + chr4_4:29117844-29117863 None:intergenic 30.0%
TGTTAGAATTGATGTCTTGA+AGG - chr4_4:29118017-29118036 Msa0677030:intron 30.0%
ATCAAGACTGATAACTTCAA+GGG + chr4_4:29118116-29118135 None:intergenic 30.0%
! GAAAGCAGATGAATTTTATC+AGG - chr4_4:29118212-29118231 Msa0677030:intron 30.0%
TTATTGTCACAGAAAGAACT+TGG - chr4_4:29118727-29118746 Msa0677030:intron 30.0%
! TGAAAGGTATACTCCAAATT+AGG - chr4_4:29118843-29118862 Msa0677030:intron 30.0%
GTAAAATGAAAGCTCTATCT+AGG - chr4_4:29118880-29118899 Msa0677030:intron 30.0%
! ATCCATCCATTAATAATGGA+TGG - chr4_4:29119039-29119058 Msa0677030:intron 30.0%
ATCCATCCATTATTAATGGA+TGG + chr4_4:29119044-29119063 None:intergenic 30.0%
AGAAATTTAGGGGATTGTAA+TGG - chr4_4:29119107-29119126 Msa0677030:CDS 30.0%
GATTTAGATGGATATGGATT+TGG + chr4_4:29119166-29119185 None:intergenic 30.0%
ATGGATGATTTAGATGGATA+TGG + chr4_4:29119172-29119191 None:intergenic 30.0%
GCATAAATGACTTGAGAATT+AGG + chr4_4:29119204-29119223 None:intergenic 30.0%
ACAAAATGCAATAGACACTA+CGG - chr4_4:29119362-29119381 Msa0677030:intron 30.0%
TAAAAATCTCAACAGGTTTG+GGG + chr4_4:29119413-29119432 None:intergenic 30.0%
GTAAAAATCTCAACAGGTTT+GGG + chr4_4:29119414-29119433 None:intergenic 30.0%
AGAATTAACAGATAAAGAGC+AGG - chr4_4:29119485-29119504 Msa0677030:CDS 30.0%
!!! GGAATTCAAAAGTACCATTT+TGG + chr4_4:29119519-29119538 None:intergenic 30.0%
!!! TCCTTTTACTTATTTTTGGG+GGG - chr4_4:29119555-29119574 Msa0677030:intron 30.0%
TCATTATATGCCATTGTCTC+TGG + chr4_4:29117525-29117544 None:intergenic 35.0%
AATGGCATATAATGATCCAG+TGG - chr4_4:29117530-29117549 Msa0677030:three_prime_UTR 35.0%
! ATTAATGCTTTCTTTGGAGG+AGG - chr4_4:29117621-29117640 Msa0677030:three_prime_UTR 35.0%
! TTAATGCTTTCTTTGGAGGA+GGG - chr4_4:29117622-29117641 Msa0677030:three_prime_UTR 35.0%
!! TACAGTTTCTGCATTGGTTA+GGG + chr4_4:29117718-29117737 None:intergenic 35.0%
!! ATACAGTTTCTGCATTGGTT+AGG + chr4_4:29117719-29117738 None:intergenic 35.0%
AACTTCATACTCATTGCTGT+TGG - chr4_4:29117905-29117924 Msa0677030:CDS 35.0%
CTTTCCGACAATACAAACAA+AGG - chr4_4:29117943-29117962 Msa0677030:CDS 35.0%
! AGCACCTTTGTTTGTATTGT+CGG + chr4_4:29117950-29117969 None:intergenic 35.0%
!! GGATTTTCAATATTTTGGGG+AGG - chr4_4:29117991-29118010 Msa0677030:CDS 35.0%
CTGATAACTTCAAGGGAAAT+GGG + chr4_4:29118109-29118128 None:intergenic 35.0%
ACTGATAACTTCAAGGGAAA+TGG + chr4_4:29118110-29118129 None:intergenic 35.0%
CATCAAGACTGATAACTTCA+AGG + chr4_4:29118117-29118136 None:intergenic 35.0%
!! TTGATGATTTTAGGCTCTAC+CGG - chr4_4:29118131-29118150 Msa0677030:intron 35.0%
ATATGAATTGGCATCCTCTT+AGG + chr4_4:29118180-29118199 None:intergenic 35.0%
TAAGAGGATGCCAATTCATA+TGG - chr4_4:29118179-29118198 Msa0677030:intron 35.0%
AATTCATCTGCTTTCTCTGT+GGG + chr4_4:29118207-29118226 None:intergenic 35.0%
AAATTCATCTGCTTTCTCTG+TGG + chr4_4:29118208-29118227 None:intergenic 35.0%
GATTCACAATACCAGCTTTA+AGG + chr4_4:29118286-29118305 None:intergenic 35.0%
CAGAGACACAATAAGTTACT+TGG - chr4_4:29118314-29118333 Msa0677030:intron 35.0%
TAAGCAAACTAGAGCCATTT+AGG + chr4_4:29118358-29118377 None:intergenic 35.0%
! GAGGTATCCCACTAAAAAAT+GGG + chr4_4:29118485-29118504 None:intergenic 35.0%
CAATAATTATGGATGGATGG+AGG + chr4_4:29118504-29118523 None:intergenic 35.0%
TTCTATTTGTACCACGTGTA+AGG - chr4_4:29118669-29118688 Msa0677030:intron 35.0%
!! AGGGGATTGTAATGGATTAA+TGG - chr4_4:29119115-29119134 Msa0677030:CDS 35.0%
GATATGGATTTGGATGGAAA+TGG + chr4_4:29119156-29119175 None:intergenic 35.0%
TAGATGGATATGGATTTGGA+TGG + chr4_4:29119162-29119181 None:intergenic 35.0%
GGCAAAATGGATGATTTAGA+TGG + chr4_4:29119178-29119197 None:intergenic 35.0%
GATATTGCTATATCAGGTCT+AGG - chr4_4:29119294-29119313 Msa0677030:CDS 35.0%
CAAAATGCAATAGACACTAC+GGG - chr4_4:29119363-29119382 Msa0677030:intron 35.0%
AAAATGCAATAGACACTACG+GGG - chr4_4:29119364-29119383 Msa0677030:intron 35.0%
CGTAAAAATCTCAACAGGTT+TGG + chr4_4:29119415-29119434 None:intergenic 35.0%
! AACCTGTTGAGATTTTTACG+AGG - chr4_4:29119415-29119434 Msa0677030:intron 35.0%
TCCCCCCAAAAATAAGTAAA+AGG + chr4_4:29119559-29119578 None:intergenic 35.0%
!!! TTTTACTTATTTTTGGGGGG+AGG - chr4_4:29119558-29119577 Msa0677030:intron 35.0%
!!! TTTACTTATTTTTGGGGGGA+GGG - chr4_4:29119559-29119578 Msa0677030:intron 35.0%
! ACATTGGTTGTTGAGAACTT+GGG + chr4_4:29119627-29119646 None:intergenic 35.0%
! AACATTGGTTGTTGAGAACT+TGG + chr4_4:29119628-29119647 None:intergenic 35.0%
TAATGTGACTAATACAACCG+TGG - chr4_4:29119659-29119678 Msa0677030:CDS 35.0%
! TTTTGAACAAACTGATGCCA+CGG + chr4_4:29119679-29119698 None:intergenic 35.0%
! CATCAGTTTGTTCAAAAGGA+AGG - chr4_4:29119682-29119701 Msa0677030:CDS 35.0%
TCATTATATGCCATTGTCTC+TGG + chr4_4:29117525-29117544 None:intergenic 35.0%
AATGGCATATAATGATCCAG+TGG - chr4_4:29117530-29117549 Msa0677030:three_prime_UTR 35.0%
! ATTAATGCTTTCTTTGGAGG+AGG - chr4_4:29117621-29117640 Msa0677030:three_prime_UTR 35.0%
! TTAATGCTTTCTTTGGAGGA+GGG - chr4_4:29117622-29117641 Msa0677030:three_prime_UTR 35.0%
!! TACAGTTTCTGCATTGGTTA+GGG + chr4_4:29117718-29117737 None:intergenic 35.0%
!! ATACAGTTTCTGCATTGGTT+AGG + chr4_4:29117719-29117738 None:intergenic 35.0%
AACTTCATACTCATTGCTGT+TGG - chr4_4:29117905-29117924 Msa0677030:CDS 35.0%
CTTTCCGACAATACAAACAA+AGG - chr4_4:29117943-29117962 Msa0677030:CDS 35.0%
! AGCACCTTTGTTTGTATTGT+CGG + chr4_4:29117950-29117969 None:intergenic 35.0%
!! GGATTTTCAATATTTTGGGG+AGG - chr4_4:29117991-29118010 Msa0677030:CDS 35.0%
CTGATAACTTCAAGGGAAAT+GGG + chr4_4:29118109-29118128 None:intergenic 35.0%
ACTGATAACTTCAAGGGAAA+TGG + chr4_4:29118110-29118129 None:intergenic 35.0%
CATCAAGACTGATAACTTCA+AGG + chr4_4:29118117-29118136 None:intergenic 35.0%
!! TTGATGATTTTAGGCTCTAC+CGG - chr4_4:29118131-29118150 Msa0677030:intron 35.0%
ATATGAATTGGCATCCTCTT+AGG + chr4_4:29118180-29118199 None:intergenic 35.0%
TAAGAGGATGCCAATTCATA+TGG - chr4_4:29118179-29118198 Msa0677030:intron 35.0%
AATTCATCTGCTTTCTCTGT+GGG + chr4_4:29118207-29118226 None:intergenic 35.0%
AAATTCATCTGCTTTCTCTG+TGG + chr4_4:29118208-29118227 None:intergenic 35.0%
GATTCACAATACCAGCTTTA+AGG + chr4_4:29118286-29118305 None:intergenic 35.0%
CAGAGACACAATAAGTTACT+TGG - chr4_4:29118314-29118333 Msa0677030:intron 35.0%
TAAGCAAACTAGAGCCATTT+AGG + chr4_4:29118358-29118377 None:intergenic 35.0%
! GAGGTATCCCACTAAAAAAT+GGG + chr4_4:29118485-29118504 None:intergenic 35.0%
CAATAATTATGGATGGATGG+AGG + chr4_4:29118504-29118523 None:intergenic 35.0%
TTCTATTTGTACCACGTGTA+AGG - chr4_4:29118669-29118688 Msa0677030:intron 35.0%
!! AGGGGATTGTAATGGATTAA+TGG - chr4_4:29119115-29119134 Msa0677030:CDS 35.0%
GATATGGATTTGGATGGAAA+TGG + chr4_4:29119156-29119175 None:intergenic 35.0%
TAGATGGATATGGATTTGGA+TGG + chr4_4:29119162-29119181 None:intergenic 35.0%
GGCAAAATGGATGATTTAGA+TGG + chr4_4:29119178-29119197 None:intergenic 35.0%
GATATTGCTATATCAGGTCT+AGG - chr4_4:29119294-29119313 Msa0677030:CDS 35.0%
CAAAATGCAATAGACACTAC+GGG - chr4_4:29119363-29119382 Msa0677030:intron 35.0%
AAAATGCAATAGACACTACG+GGG - chr4_4:29119364-29119383 Msa0677030:intron 35.0%
CGTAAAAATCTCAACAGGTT+TGG + chr4_4:29119415-29119434 None:intergenic 35.0%
! AACCTGTTGAGATTTTTACG+AGG - chr4_4:29119415-29119434 Msa0677030:intron 35.0%
TCCCCCCAAAAATAAGTAAA+AGG + chr4_4:29119559-29119578 None:intergenic 35.0%
!!! TTTTACTTATTTTTGGGGGG+AGG - chr4_4:29119558-29119577 Msa0677030:intron 35.0%
!!! TTTACTTATTTTTGGGGGGA+GGG - chr4_4:29119559-29119578 Msa0677030:intron 35.0%
! ACATTGGTTGTTGAGAACTT+GGG + chr4_4:29119627-29119646 None:intergenic 35.0%
! AACATTGGTTGTTGAGAACT+TGG + chr4_4:29119628-29119647 None:intergenic 35.0%
TAATGTGACTAATACAACCG+TGG - chr4_4:29119659-29119678 Msa0677030:CDS 35.0%
! TTTTGAACAAACTGATGCCA+CGG + chr4_4:29119679-29119698 None:intergenic 35.0%
! CATCAGTTTGTTCAAAAGGA+AGG - chr4_4:29119682-29119701 Msa0677030:CDS 35.0%
! TAATGCTTTCTTTGGAGGAG+GGG - chr4_4:29117623-29117642 Msa0677030:three_prime_UTR 40.0%
GTGTCATACAGTTTCTGCAT+TGG + chr4_4:29117724-29117743 None:intergenic 40.0%
AAGAACATACCGGGAAAGAT+AGG + chr4_4:29117834-29117853 None:intergenic 40.0%
!! AAAGGTGCTTCGACAGTAAA+TGG - chr4_4:29117961-29117980 Msa0677030:CDS 40.0%
! TAACATTTTACGGGCCTAAG+AGG - chr4_4:29118163-29118182 Msa0677030:intron 40.0%
!!! CTTGCTGTTTTCCTTAAAGC+TGG - chr4_4:29118272-29118291 Msa0677030:intron 40.0%
!!! CTTGGTGTTTTGCTTAAAGC+TGG - chr4_4:29118332-29118351 Msa0677030:intron 40.0%
! TTGCTTAAAGCTGGCCTAAA+TGG - chr4_4:29118341-29118360 Msa0677030:intron 40.0%
CATAACAATGGACCCTGAAT+TGG + chr4_4:29118414-29118433 None:intergenic 40.0%
CAATTCAGGGTCCATTGTTA+TGG - chr4_4:29118412-29118431 Msa0677030:intron 40.0%
!! GGAGGTATCCCACTAAAAAA+TGG + chr4_4:29118486-29118505 None:intergenic 40.0%
CAAGGAAATATCCTTACACG+TGG + chr4_4:29118683-29118702 None:intergenic 40.0%
TCCTTGTGAAACCTGAATGA+CGG - chr4_4:29118697-29118716 Msa0677030:intron 40.0%
ATAAACAGAAGCCGTCATTC+AGG + chr4_4:29118711-29118730 None:intergenic 40.0%
AATGACTTGAGAATTAGGGG+TGG + chr4_4:29119199-29119218 None:intergenic 40.0%
!!! CTGTTGCTTTCTTTTTGTGC+AGG - chr4_4:29119262-29119281 Msa0677030:intron 40.0%
GATATAGCAATATCGCAAGC+TGG + chr4_4:29119288-29119307 None:intergenic 40.0%
GCTTGCGATATTGCTATATC+AGG - chr4_4:29119288-29119307 Msa0677030:CDS 40.0%
TTGCTATATCAGGTCTAGGA+TGG - chr4_4:29119298-29119317 Msa0677030:CDS 40.0%
AAATGCAATAGACACTACGG+GGG - chr4_4:29119365-29119384 Msa0677030:intron 40.0%
AGCAGGAAATGAGACCAAAA+TGG - chr4_4:29119502-29119521 Msa0677030:CDS 40.0%
! GTGGCATCAGTTTGTTCAAA+AGG - chr4_4:29119678-29119697 Msa0677030:CDS 40.0%
ATATGCCATTGTCTCTGGTA+CGG + chr4_4:29117520-29117539 None:intergenic 40.0%
! TAATGCTTTCTTTGGAGGAG+GGG - chr4_4:29117623-29117642 Msa0677030:three_prime_UTR 40.0%
GTGTCATACAGTTTCTGCAT+TGG + chr4_4:29117724-29117743 None:intergenic 40.0%
AAGAACATACCGGGAAAGAT+AGG + chr4_4:29117834-29117853 None:intergenic 40.0%
!! AAAGGTGCTTCGACAGTAAA+TGG - chr4_4:29117961-29117980 Msa0677030:CDS 40.0%
! TAACATTTTACGGGCCTAAG+AGG - chr4_4:29118163-29118182 Msa0677030:intron 40.0%
!!! CTTGCTGTTTTCCTTAAAGC+TGG - chr4_4:29118272-29118291 Msa0677030:intron 40.0%
!!! CTTGGTGTTTTGCTTAAAGC+TGG - chr4_4:29118332-29118351 Msa0677030:intron 40.0%
! TTGCTTAAAGCTGGCCTAAA+TGG - chr4_4:29118341-29118360 Msa0677030:intron 40.0%
CATAACAATGGACCCTGAAT+TGG + chr4_4:29118414-29118433 None:intergenic 40.0%
CAATTCAGGGTCCATTGTTA+TGG - chr4_4:29118412-29118431 Msa0677030:intron 40.0%
!! GGAGGTATCCCACTAAAAAA+TGG + chr4_4:29118486-29118505 None:intergenic 40.0%
CAAGGAAATATCCTTACACG+TGG + chr4_4:29118683-29118702 None:intergenic 40.0%
TCCTTGTGAAACCTGAATGA+CGG - chr4_4:29118697-29118716 Msa0677030:intron 40.0%
ATAAACAGAAGCCGTCATTC+AGG + chr4_4:29118711-29118730 None:intergenic 40.0%
AATGACTTGAGAATTAGGGG+TGG + chr4_4:29119199-29119218 None:intergenic 40.0%
!!! CTGTTGCTTTCTTTTTGTGC+AGG - chr4_4:29119262-29119281 Msa0677030:intron 40.0%
GATATAGCAATATCGCAAGC+TGG + chr4_4:29119288-29119307 None:intergenic 40.0%
GCTTGCGATATTGCTATATC+AGG - chr4_4:29119288-29119307 Msa0677030:CDS 40.0%
TTGCTATATCAGGTCTAGGA+TGG - chr4_4:29119298-29119317 Msa0677030:CDS 40.0%
AAATGCAATAGACACTACGG+GGG - chr4_4:29119365-29119384 Msa0677030:intron 40.0%
AGCAGGAAATGAGACCAAAA+TGG - chr4_4:29119502-29119521 Msa0677030:CDS 40.0%
! GTGGCATCAGTTTGTTCAAA+AGG - chr4_4:29119678-29119697 Msa0677030:CDS 40.0%
CTGTTCCTGGAACTACCTTA+GGG - chr4_4:29117589-29117608 Msa0677030:three_prime_UTR 45.0%
CAGAAACTGTATGACACTCC+AGG - chr4_4:29117727-29117746 Msa0677030:three_prime_UTR 45.0%
AGCAAGGGAGGATAGATCTT+CGG + chr4_4:29117791-29117810 None:intergenic 45.0%
TCGACAGTAAATGGCCTGAA+TGG - chr4_4:29117970-29117989 Msa0677030:CDS 45.0%
TCTGTGGGCACCATATGAAT+TGG + chr4_4:29118192-29118211 None:intergenic 45.0%
! CCTTCTCTTTTCCACTTGGT+GGG + chr4_4:29118765-29118784 None:intergenic 45.0%
! TCAGCCTTCTCTTTTCCACT+TGG + chr4_4:29118769-29118788 None:intergenic 45.0%
GAAAAGAGAAGGCTGAGAAC+TGG - chr4_4:29118773-29118792 Msa0677030:intron 45.0%
GAGAATTAGGGGTGGCAAAA+TGG + chr4_4:29119191-29119210 None:intergenic 45.0%
AATCTGTGTGACCTACCAAC+CGG + chr4_4:29119336-29119355 None:intergenic 45.0%
AACAGGTTTGGGGACATGTA+CGG + chr4_4:29119403-29119422 None:intergenic 45.0%
GGCCTCGTAAAAATCTCAAC+AGG + chr4_4:29119420-29119439 None:intergenic 45.0%
GTTGTTGAGAACTTGGGTAG+AGG + chr4_4:29119621-29119640 None:intergenic 45.0%
CTGTTCCTGGAACTACCTTA+GGG - chr4_4:29117589-29117608 Msa0677030:three_prime_UTR 45.0%
CAGAAACTGTATGACACTCC+AGG - chr4_4:29117727-29117746 Msa0677030:three_prime_UTR 45.0%
AGCAAGGGAGGATAGATCTT+CGG + chr4_4:29117791-29117810 None:intergenic 45.0%
TCGACAGTAAATGGCCTGAA+TGG - chr4_4:29117970-29117989 Msa0677030:CDS 45.0%
TCTGTGGGCACCATATGAAT+TGG + chr4_4:29118192-29118211 None:intergenic 45.0%
! CCTTCTCTTTTCCACTTGGT+GGG + chr4_4:29118765-29118784 None:intergenic 45.0%
! TCAGCCTTCTCTTTTCCACT+TGG + chr4_4:29118769-29118788 None:intergenic 45.0%
GAAAAGAGAAGGCTGAGAAC+TGG - chr4_4:29118773-29118792 Msa0677030:intron 45.0%
GAGAATTAGGGGTGGCAAAA+TGG + chr4_4:29119191-29119210 None:intergenic 45.0%
AATCTGTGTGACCTACCAAC+CGG + chr4_4:29119336-29119355 None:intergenic 45.0%
AACAGGTTTGGGGACATGTA+CGG + chr4_4:29119403-29119422 None:intergenic 45.0%
GGCCTCGTAAAAATCTCAAC+AGG + chr4_4:29119420-29119439 None:intergenic 45.0%
GTTGTTGAGAACTTGGGTAG+AGG + chr4_4:29119621-29119640 None:intergenic 45.0%
!!! AATTATTTTAAAGAAATTTA+GGG - chr4_4:29119096-29119115 Msa0677030:CDS 5.0%
!!! AATTATTTTAAAGAAATTTA+GGG - chr4_4:29119096-29119115 Msa0677030:CDS 5.0%
GCTGTTCCTGGAACTACCTT+AGG - chr4_4:29117588-29117607 Msa0677030:three_prime_UTR 50.0%
ATTGGCCCTAAGGTAGTTCC+AGG + chr4_4:29117597-29117616 None:intergenic 50.0%
GAACAACTGCAGTTTGCCTG+TGG + chr4_4:29117765-29117784 None:intergenic 50.0%
AGGGAGGATAGATCTTCGGA+AGG + chr4_4:29117787-29117806 None:intergenic 50.0%
!! CAGTCGGCTTTTAGGAGCAA+GGG + chr4_4:29117806-29117825 None:intergenic 50.0%
!! TCAGTCGGCTTTTAGGAGCA+AGG + chr4_4:29117807-29117826 None:intergenic 50.0%
TTGCTCCTAAAAGCCGACTG+AGG - chr4_4:29117806-29117825 Msa0677030:CDS 50.0%
TGCTCCTAAAAGCCGACTGA+GGG - chr4_4:29117807-29117826 Msa0677030:CDS 50.0%
! GCCGTCATTCAGGTTTCACA+AGG + chr4_4:29118701-29118720 None:intergenic 50.0%
GTTCTGCTAATCCCACCAAG+TGG - chr4_4:29118751-29118770 Msa0677030:intron 50.0%
CCCACCAAGTGGAAAAGAGA+AGG - chr4_4:29118762-29118781 Msa0677030:intron 50.0%
! GCCTTCTCTTTTCCACTTGG+TGG + chr4_4:29118766-29118785 None:intergenic 50.0%
AGGATGGCTTTCTGTTGAGC+CGG - chr4_4:29119314-29119333 Msa0677030:CDS 50.0%
TTTCTGTTGAGCCGGTTGGT+AGG - chr4_4:29119322-29119341 Msa0677030:CDS 50.0%
CATTACCAGTAGGCAAGGCT+GGG - chr4_4:29119442-29119461 Msa0677030:intron 50.0%
ATTACCAGTAGGCAAGGCTG+GGG - chr4_4:29119443-29119462 Msa0677030:intron 50.0%
!! ATTTTTGGGGGGAGGGTACA+TGG - chr4_4:29119566-29119585 Msa0677030:intron 50.0%
GCTGTTCCTGGAACTACCTT+AGG - chr4_4:29117588-29117607 Msa0677030:three_prime_UTR 50.0%
ATTGGCCCTAAGGTAGTTCC+AGG + chr4_4:29117597-29117616 None:intergenic 50.0%
GAACAACTGCAGTTTGCCTG+TGG + chr4_4:29117765-29117784 None:intergenic 50.0%
AGGGAGGATAGATCTTCGGA+AGG + chr4_4:29117787-29117806 None:intergenic 50.0%
!! CAGTCGGCTTTTAGGAGCAA+GGG + chr4_4:29117806-29117825 None:intergenic 50.0%
!! TCAGTCGGCTTTTAGGAGCA+AGG + chr4_4:29117807-29117826 None:intergenic 50.0%
TTGCTCCTAAAAGCCGACTG+AGG - chr4_4:29117806-29117825 Msa0677030:CDS 50.0%
TGCTCCTAAAAGCCGACTGA+GGG - chr4_4:29117807-29117826 Msa0677030:CDS 50.0%
! GCCGTCATTCAGGTTTCACA+AGG + chr4_4:29118701-29118720 None:intergenic 50.0%
GTTCTGCTAATCCCACCAAG+TGG - chr4_4:29118751-29118770 Msa0677030:intron 50.0%
CCCACCAAGTGGAAAAGAGA+AGG - chr4_4:29118762-29118781 Msa0677030:intron 50.0%
! GCCTTCTCTTTTCCACTTGG+TGG + chr4_4:29118766-29118785 None:intergenic 50.0%
AGGATGGCTTTCTGTTGAGC+CGG - chr4_4:29119314-29119333 Msa0677030:CDS 50.0%
TTTCTGTTGAGCCGGTTGGT+AGG - chr4_4:29119322-29119341 Msa0677030:CDS 50.0%
CATTACCAGTAGGCAAGGCT+GGG - chr4_4:29119442-29119461 Msa0677030:intron 50.0%
ATTACCAGTAGGCAAGGCTG+GGG - chr4_4:29119443-29119462 Msa0677030:intron 50.0%
!! ATTTTTGGGGGGAGGGTACA+TGG - chr4_4:29119566-29119585 Msa0677030:intron 50.0%
CCAGGAACAGCAGACTGTAC+TGG + chr4_4:29117579-29117598 None:intergenic 55.0%
CCAGTACAGTCTGCTGTTCC+TGG - chr4_4:29117576-29117595 Msa0677030:three_prime_UTR 55.0%
! CTGTGGTGGAGATGAACTCC+TGG + chr4_4:29117748-29117767 None:intergenic 55.0%
CAGGAGTTCATCTCCACCAC+AGG - chr4_4:29117746-29117765 Msa0677030:three_prime_UTR 55.0%
CAACTGCAGTTTGCCTGTGG+TGG + chr4_4:29117762-29117781 None:intergenic 55.0%
!! TCGGCTTTTAGGAGCAAGGG+AGG + chr4_4:29117803-29117822 None:intergenic 55.0%
GCTCCTAAAAGCCGACTGAG+GGG - chr4_4:29117808-29117827 Msa0677030:CDS 55.0%
GGAAAGATAGGCCCCTCAGT+CGG + chr4_4:29117822-29117841 None:intergenic 55.0%
ACTGAGGGGCCTATCTTTCC+CGG - chr4_4:29117822-29117841 Msa0677030:CDS 55.0%
GAGAAGGCTGAGAACTGGAG+AGG - chr4_4:29118778-29118797 Msa0677030:intron 55.0%
TGGCTTTCTGTTGAGCCGGT+TGG - chr4_4:29119318-29119337 Msa0677030:CDS 55.0%
ACGAGGCCACCATTACCAGT+AGG - chr4_4:29119432-29119451 Msa0677030:intron 55.0%
GCCACCATTACCAGTAGGCA+AGG - chr4_4:29119437-29119456 Msa0677030:intron 55.0%
!! GCCTTGCCTACTGGTAATGG+TGG + chr4_4:29119441-29119460 None:intergenic 55.0%
CCAGCCTTGCCTACTGGTAA+TGG + chr4_4:29119444-29119463 None:intergenic 55.0%
CCATTACCAGTAGGCAAGGC+TGG - chr4_4:29119441-29119460 Msa0677030:intron 55.0%
CCAGGAACAGCAGACTGTAC+TGG + chr4_4:29117579-29117598 None:intergenic 55.0%
CCAGTACAGTCTGCTGTTCC+TGG - chr4_4:29117576-29117595 Msa0677030:three_prime_UTR 55.0%
! CTGTGGTGGAGATGAACTCC+TGG + chr4_4:29117748-29117767 None:intergenic 55.0%
CAGGAGTTCATCTCCACCAC+AGG - chr4_4:29117746-29117765 Msa0677030:three_prime_UTR 55.0%
CAACTGCAGTTTGCCTGTGG+TGG + chr4_4:29117762-29117781 None:intergenic 55.0%
!! TCGGCTTTTAGGAGCAAGGG+AGG + chr4_4:29117803-29117822 None:intergenic 55.0%
GCTCCTAAAAGCCGACTGAG+GGG - chr4_4:29117808-29117827 Msa0677030:CDS 55.0%
GGAAAGATAGGCCCCTCAGT+CGG + chr4_4:29117822-29117841 None:intergenic 55.0%
ACTGAGGGGCCTATCTTTCC+CGG - chr4_4:29117822-29117841 Msa0677030:CDS 55.0%
GAGAAGGCTGAGAACTGGAG+AGG - chr4_4:29118778-29118797 Msa0677030:intron 55.0%
TGGCTTTCTGTTGAGCCGGT+TGG - chr4_4:29119318-29119337 Msa0677030:CDS 55.0%
ACGAGGCCACCATTACCAGT+AGG - chr4_4:29119432-29119451 Msa0677030:intron 55.0%
GCCACCATTACCAGTAGGCA+AGG - chr4_4:29119437-29119456 Msa0677030:intron 55.0%
!! GCCTTGCCTACTGGTAATGG+TGG + chr4_4:29119441-29119460 None:intergenic 55.0%
CCAGCCTTGCCTACTGGTAA+TGG + chr4_4:29119444-29119463 None:intergenic 55.0%
CCATTACCAGTAGGCAAGGC+TGG - chr4_4:29119441-29119460 Msa0677030:intron 55.0%
CTTTGTGCAGCTGCAGCCAC+TGG + chr4_4:29117549-29117568 None:intergenic 60.0%
!! AGGCCCCTCAGTCGGCTTTT+AGG + chr4_4:29117814-29117833 None:intergenic 60.0%
TAGGCAAGGCTGGGGCAGAA+TGG - chr4_4:29119451-29119470 Msa0677030:intron 60.0%
CTTTGTGCAGCTGCAGCCAC+TGG + chr4_4:29117549-29117568 None:intergenic 60.0%
!! AGGCCCCTCAGTCGGCTTTT+AGG + chr4_4:29117814-29117833 None:intergenic 60.0%
TAGGCAAGGCTGGGGCAGAA+TGG - chr4_4:29119451-29119470 Msa0677030:intron 60.0%
TCTGCCCCAGCCTTGCCTAC+TGG + chr4_4:29119450-29119469 None:intergenic 65.0%
TCTGCCCCAGCCTTGCCTAC+TGG + chr4_4:29119450-29119469 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 29117520 29119781 29117520 ID=Msa0677030;Name=Msa0677030
chr4_4 mRNA 29117520 29119781 29117520 ID=Msa0677030-mRNA-1;Parent=Msa0677030;Name=Msa0677030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11|1|1|1|1|1|6|248|261
chr4_4 exon 29117520 29118017 29117520 ID=Msa0677030-mRNA-1:exon:7519;Parent=Msa0677030-mRNA-1
chr4_4 exon 29118453 29118562 29118453 ID=Msa0677030-mRNA-1:exon:7518;Parent=Msa0677030-mRNA-1
chr4_4 exon 29119068 29119157 29119068 ID=Msa0677030-mRNA-1:exon:7517;Parent=Msa0677030-mRNA-1
chr4_4 exon 29119263 29119370 29119263 ID=Msa0677030-mRNA-1:exon:7516;Parent=Msa0677030-mRNA-1
chr4_4 exon 29119458 29119571 29119458 ID=Msa0677030-mRNA-1:exon:7515;Parent=Msa0677030-mRNA-1
chr4_4 exon 29119657 29119781 29119657 ID=Msa0677030-mRNA-1:exon:7514;Parent=Msa0677030-mRNA-1
chr4_4 five_prime_UTR 29119771 29119781 29119771 ID=Msa0677030-mRNA-1:five_prime_utr;Parent=Msa0677030-mRNA-1
chr4_4 CDS 29119657 29119770 29119657 ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4 CDS 29119458 29119571 29119458 ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4 CDS 29119263 29119370 29119263 ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4 CDS 29119068 29119157 29119068 ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4 CDS 29118453 29118562 29118453 ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4 CDS 29117768 29118017 29117768 ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4 three_prime_UTR 29117520 29117767 29117520 ID=Msa0677030-mRNA-1:three_prime_utr;Parent=Msa0677030-mRNA-1
Gene Sequence

>Msa0677030

ATGGCATATAATGATCCAGTGGCTGCAGCTGCACAAAGATACAAACCAGTACAGTCTGCTGTTCCTGGAACTACCTTAGGGCCAATTCAAATTAATGCTTTCTTTGGAGGAGGGAAACTGTATGACACTCCAGGAGTTCATCTCCACCACAGGCAAACTGCAGTTGTTCCTTCCGAAGATCTATCCTCCCTTGCTCCTAAAAGCCGACTGAGGGGCCTATCTTTCCCGAGTTCACAAGTACTTTCCGACAATACAAACAAAGGTGCTTCGACAGTAAATGGCCTGAATGGATTTTCAATATTTTGGGGAGGTCTTGTTAGAATTGATGTCTTGAAGGCTCTACCGGAAACATGTTTAACATTTTACGGGCCTAAGAGGATGCCAATTCATATGGTGCCCACAGAGAAAGCAGATGAATTTTATCAGAAAGAACTTGGAGTTCTGCTAATCCCACCAAGTGGAAAAGAGAAGGCTGAGAACTGGAGAGGACTTGACTCAGAACGTAAATTGCAAATAAAATTTGAAGATACTGAAAGGCCAGCTTGCGATATTGCTATATCAGGTCTAGGATGGCTTTCTGTTGAGCCGGTTGGTAGGTCACACAGATTCTCACAACAAAATGCAATAGACACTACGGGGGAATTGCTTTTAGCCGTACATGTCCCCAAACCTGTTGAGATTTTTACGAGGCCACCATTACCAGTAGGCAAGGCTGGGGCAGAATGGTACGAGTATGCAGAATTAACAGATAAAGAGCAGGAAATGAGACCAAAATGGTACTTTTGA

Protein sequence

>Msa0677030

MAYNDPVAAAAQRYKPVQSAVPGTTLGPIQINAFFGGGKLYDTPGVHLHHRQTAVVPSEDLSSLAPKSRLRGLSFPSSQVLSDNTNKGASTVNGLNGFSIFWGGLVRIDVLKALPETCLTFYGPKRMPIHMVPTEKADEFYQKELGVLLIPPSGKEKAENWRGLDSERKLQIKFEDTERPACDIAISGLGWLSVEPVGRSHRFSQQNAIDTTGELLLAVHVPKPVEIFTRPPLPVGKAGAEWYEYAELTDKEQEMRPKWYF*