AlfalfaGEDB | Msa0677030

M. sativa cultivar zhongmu-4 / Msa0677030

KEGG: K13427
GO: GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677030	XP_003595751.1	98.084	261	5	0	1	261	287	547	0.0	538

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677030	sp\|Q66GP9\|NOA1_ARATH	63.498	263	90	2	1	261	303	561	6.78e-118	351

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677030	G7IGS4	98.084	261	5	0	1	261	287	547	0.0	538

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0677030	0.811796	5.853448e-51	-8.615850e-47
Msa0001460	Msa0677030	0.837954	3.830561e-57	-8.615850e-47
Msa0001540	Msa0677030	0.857981	1.126628e-62	-8.615850e-47
Msa0002060	Msa0677030	0.808780	2.617002e-50	-8.615850e-47
Msa0009800	Msa0677030	0.810662	1.031079e-50	-8.615850e-47
Msa0009890	Msa0677030	0.824584	7.458576e-54	-8.615850e-47
Msa0012460	Msa0677030	0.859332	4.449979e-63	-8.615850e-47
Msa0016110	Msa0677030	0.802866	4.577839e-49	-8.615850e-47
Msa0016160	Msa0677030	0.803376	3.590447e-49	-8.615850e-47
Msa0017120	Msa0677030	0.821839	3.261626e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677030	MtrunA17_Chr4g0020791	98.084	261	5	0	1	261	287	547	0.0	538

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677030	AT3G47450.2	63.498	263	90	2	1	261	303	561	6.89e-119	351
Msa0677030	AT3G47450.1	62.738	263	92	2	1	261	303	561	1.58e-117	348
Msa0677030	AT4G10620.1	24.658	219	130	5	17	233	345	530	2.86e-12	66.6

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Find 83 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTGAAAATCCATTC+AGG	0.478937	4_4:+29119295	None:intergenic
AAAATGCAATAGACACTACG+GGG	0.732571	4_4:-29117915	Msa0677030:CDS
AAAGGTGCTTCGACAGTAAA+TGG	0.298977	4_4:-29119318	Msa0677030:CDS
AAATGCAATAGACACTACGG+GGG	0.756248	4_4:-29117914	Msa0677030:CDS
AAATTCATCTGCTTTCTCTG+TGG	0.589837	4_4:+29119074	None:intergenic
AAATTTCACCCTTGCTACCG+AGG	0.594389	4_4:-29117517	None:intergenic
AACAGGTTTGGGGACATGTA+CGG	0.568281	4_4:+29117879	None:intergenic
AACATTGGTTGTTGAGAACT+TGG	0.383313	4_4:+29117654	None:intergenic
AAGAAAGCATTAATTTGAAT+TGG	0.326794	4_4:+29119667	None:intergenic
AAGAACATACCGGGAAAGAT+AGG	0.460823	4_4:+29119448	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATTAATGCTTTCTTTGG+AGG	-	chr4_4:29117618-29117637	Msa0677030:three_prime_UTR	30.0%
AGTATTTGAAAGAACATACC+GGG	+	chr4_4:29117843-29117862	None:intergenic	30.0%
CAGTATTTGAAAGAACATAC+CGG	+	chr4_4:29117844-29117863	None:intergenic	30.0%
TGTTAGAATTGATGTCTTGA+AGG	-	chr4_4:29118017-29118036	Msa0677030:intron	30.0%
ATCAAGACTGATAACTTCAA+GGG	+	chr4_4:29118116-29118135	None:intergenic	30.0%
TTATTGTCACAGAAAGAACT+TGG	-	chr4_4:29118727-29118746	Msa0677030:intron	30.0%
GTAAAATGAAAGCTCTATCT+AGG	-	chr4_4:29118880-29118899	Msa0677030:intron	30.0%
ATCCATCCATTATTAATGGA+TGG	+	chr4_4:29119044-29119063	None:intergenic	30.0%
AGAAATTTAGGGGATTGTAA+TGG	-	chr4_4:29119107-29119126	Msa0677030:CDS	30.0%
GATTTAGATGGATATGGATT+TGG	+	chr4_4:29119166-29119185	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	29117520	29119781	29117520	ID=Msa0677030;Name=Msa0677030
chr4_4	mRNA	29117520	29119781	29117520	ID=Msa0677030-mRNA-1;Parent=Msa0677030;Name=Msa0677030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11\|1\|1\|1\|1\|1\|6\|248\|261
chr4_4	exon	29117520	29118017	29117520	ID=Msa0677030-mRNA-1:exon:7519;Parent=Msa0677030-mRNA-1
chr4_4	exon	29118453	29118562	29118453	ID=Msa0677030-mRNA-1:exon:7518;Parent=Msa0677030-mRNA-1
chr4_4	exon	29119068	29119157	29119068	ID=Msa0677030-mRNA-1:exon:7517;Parent=Msa0677030-mRNA-1
chr4_4	exon	29119263	29119370	29119263	ID=Msa0677030-mRNA-1:exon:7516;Parent=Msa0677030-mRNA-1
chr4_4	exon	29119458	29119571	29119458	ID=Msa0677030-mRNA-1:exon:7515;Parent=Msa0677030-mRNA-1
chr4_4	exon	29119657	29119781	29119657	ID=Msa0677030-mRNA-1:exon:7514;Parent=Msa0677030-mRNA-1
chr4_4	five_prime_UTR	29119771	29119781	29119771	ID=Msa0677030-mRNA-1:five_prime_utr;Parent=Msa0677030-mRNA-1
chr4_4	CDS	29119657	29119770	29119657	ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4	CDS	29119458	29119571	29119458	ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4	CDS	29119263	29119370	29119263	ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4	CDS	29119068	29119157	29119068	ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4	CDS	29118453	29118562	29118453	ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4	CDS	29117768	29118017	29117768	ID=Msa0677030-mRNA-1:cds;Parent=Msa0677030-mRNA-1
chr4_4	three_prime_UTR	29117520	29117767	29117520	ID=Msa0677030-mRNA-1:three_prime_utr;Parent=Msa0677030-mRNA-1

Gene Sequence

>Msa0677030

ATGGCATATAATGATCCAGTGGCTGCAGCTGCACAAAGATACAAACCAGTACAGTCTGCTGTTCCTGGAACTACCTTAGGGCCAATTCAAATTAATGCTTTCTTTGGAGGAGGGAAACTGTATGACACTCCAGGAGTTCATCTCCACCACAGGCAAACTGCAGTTGTTCCTTCCGAAGATCTATCCTCCCTTGCTCCTAAAAGCCGACTGAGGGGCCTATCTTTCCCGAGTTCACAAGTACTTTCCGACAATACAAACAAAGGTGCTTCGACAGTAAATGGCCTGAATGGATTTTCAATATTTTGGGGAGGTCTTGTTAGAATTGATGTCTTGAAGGCTCTACCGGAAACATGTTTAACATTTTACGGGCCTAAGAGGATGCCAATTCATATGGTGCCCACAGAGAAAGCAGATGAATTTTATCAGAAAGAACTTGGAGTTCTGCTAATCCCACCAAGTGGAAAAGAGAAGGCTGAGAACTGGAGAGGACTTGACTCAGAACGTAAATTGCAAATAAAATTTGAAGATACTGAAAGGCCAGCTTGCGATATTGCTATATCAGGTCTAGGATGGCTTTCTGTTGAGCCGGTTGGTAGGTCACACAGATTCTCACAACAAAATGCAATAGACACTACGGGGGAATTGCTTTTAGCCGTACATGTCCCCAAACCTGTTGAGATTTTTACGAGGCCACCATTACCAGTAGGCAAGGCTGGGGCAGAATGGTACGAGTATGCAGAATTAACAGATAAAGAGCAGGAAATGAGACCAAAATGGTACTTTTGA

Protein sequence

>Msa0677030

MAYNDPVAAAAQRYKPVQSAVPGTTLGPIQINAFFGGGKLYDTPGVHLHHRQTAVVPSEDLSSLAPKSRLRGLSFPSSQVLSDNTNKGASTVNGLNGFSIFWGGLVRIDVLKALPETCLTFYGPKRMPIHMVPTEKADEFYQKELGVLLIPPSGKEKAENWRGLDSERKLQIKFEDTERPACDIAISGLGWLSVEPVGRSHRFSQQNAIDTTGELLLAVHVPKPVEIFTRPPLPVGKAGAEWYEYAELTDKEQEMRPKWYF*