AlfalfaGEDB | MS.gene25856

M. sativa cultivar XinJiangDaYe / MS.gene25856

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00498.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25856.t1	XP_003601330.1	94.3	228	13	0	1	228	1	228	4.60E-114	420.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25856.t1	P93236	29.5	149	97	4	56	198	505	651	1.2e-06	55.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25856.t1	G7J637	94.3	228	13	0	1	228	1	228	3.3e-114	420.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene25856	0.874756	5.27E-68	-1.69E-46
MS.gene049171	MS.gene25856	0.875364	3.27E-68	-1.69E-46
MS.gene049173	MS.gene25856	0.852944	3.31E-61	-1.69E-46
MS.gene049217	MS.gene25856	0.876827	1.02E-68	-1.69E-46
MS.gene049222	MS.gene25856	0.895009	1.44E-75	-1.69E-46
MS.gene049232	MS.gene25856	0.807512	4.87E-50	-1.69E-46
MS.gene049285	MS.gene25856	0.913368	6.67E-84	-1.69E-46
MS.gene049320	MS.gene25856	0.911323	6.92E-83	-1.69E-46
MS.gene04939	MS.gene25856	0.81095	8.93E-51	-1.69E-46
MS.gene049427	MS.gene25856	0.874978	4.43E-68	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25856.t1	MTR_3g079520	94.009	217	13	0	1	217	1	217	8.36e-147	408
MS.gene25856.t1	MTR_3g479600	94.009	217	13	0	1	217	1	217	8.36e-147	408

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25856.t1	AT2G21530	59.231	130	52	1	82	211	81	209	9.38e-51	164

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Find 40 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCCAGGGGACACTAATT+TGG	0.313943	3.2:-69956102	MS.gene25856:intron
ACTCTAGCAACAATAATGGA+AGG	0.614859	3.2:-69957364	None:intergenic
ACTTCTATACCTGTTGCAAC+TGG	0.344018	3.2:+69956634	None:intergenic
AGATGGATTCTTGAACCAGT+TGG	0.550406	3.2:-69957091	MS.gene25856:intron
AGCACCAATGGAACATTCAT+TGG	0.469041	3.2:-69956392	MS.gene25856:CDS
ATAACTCCCAGAAGATACAG+TGG	0.690459	3.2:+69956340	None:intergenic
ATAGATTTGGATAGCACCAA+TGG	0.560750	3.2:-69956404	MS.gene25856:CDS
ATCACTAAATCAGCTTTCTC+TGG	0.443107	3.2:+69956658	None:intergenic
ATCTAGAATGAAGTCACTGT+AGG	0.636581	3.2:-69956688	MS.gene25856:intron
CAACTAATGCTACACAAAGA+TGG	0.490326	3.2:-69957108	MS.gene25856:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGAGGTTAAATATGGAATA+GGG	+	chr3.2:69957202-69957221	None:intergenic	30.0%
GCATTGGAGTGTAATAAAAT+TGG	+	chr3.2:69956064-69956083	None:intergenic	30.0%
TATATAACCCTGTTTGTAGA+AGG	-	chr3.2:69957112-69957131	MS.gene25856:CDS	30.0%
TTAAGATCCTTCTACAAACA+GGG	+	chr3.2:69957122-69957141	None:intergenic	30.0%
ATAGATTTGGATAGCACCAA+TGG	-	chr3.2:69956928-69956947	MS.gene25856:intron	35.0%
ATCACTAAATCAGCTTTCTC+TGG	+	chr3.2:69956677-69956696	None:intergenic	35.0%
CAACTAATGCTACACAAAGA+TGG	-	chr3.2:69956224-69956243	MS.gene25856:intron	35.0%
CCATCTCCTATCAAAATGAT+TGG	+	chr3.2:69956496-69956515	None:intergenic	35.0%
CTTTGTGTAGCATTAGTTGT+TGG	+	chr3.2:69956223-69956242	None:intergenic	35.0%
GAAGTAATTTCATAAGCACC+TGG	+	chr3.2:69956553-69956572	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	69955983	69957371	69955983	ID=MS.gene25856
chr3.2	mRNA	69955983	69957371	69955983	ID=MS.gene25856.t1;Parent=MS.gene25856
chr3.2	exon	69957092	69957371	69957092	ID=MS.gene25856.t1.exon1;Parent=MS.gene25856.t1
chr3.2	CDS	69957092	69957371	69957092	ID=cds.MS.gene25856.t1;Parent=MS.gene25856.t1
chr3.2	exon	69956781	69956845	69956781	ID=MS.gene25856.t1.exon2;Parent=MS.gene25856.t1
chr3.2	CDS	69956781	69956845	69956781	ID=cds.MS.gene25856.t1;Parent=MS.gene25856.t1
chr3.2	exon	69956644	69956704	69956644	ID=MS.gene25856.t1.exon3;Parent=MS.gene25856.t1
chr3.2	CDS	69956644	69956704	69956644	ID=cds.MS.gene25856.t1;Parent=MS.gene25856.t1
chr3.2	exon	69956330	69956476	69956330	ID=MS.gene25856.t1.exon4;Parent=MS.gene25856.t1
chr3.2	CDS	69956330	69956476	69956330	ID=cds.MS.gene25856.t1;Parent=MS.gene25856.t1
chr3.2	exon	69955983	69956116	69955983	ID=MS.gene25856.t1.exon5;Parent=MS.gene25856.t1
chr3.2	CDS	69955983	69956116	69955983	ID=cds.MS.gene25856.t1;Parent=MS.gene25856.t1

Gene Sequence

>MS.gene25856

ATGGAAGGCATTGTAAAATCTCTCTACCTAACAAAAATTCCAAAGTCTCAAACATGTTCTGCTTCTCTGTTGAACTCACCAATTTTATTACACTCCAATGCCACTTCAGTAACTTTCAGTTCAGCAACAAATCATCTGCACAAGTGCTTTCTTTTTCAGCAACCAGGTCGTGTTATACATCCCAAATCACAGGAAAAAGTGAACCTAGGAGCTATACATGCATCAAAAGCTACCACTCCAACAACTAATGCTACACAAAGATGGATTCTTGAACCAGTTGGTTAGTTACACTTTCTTCTTCAATCATATCTAGAAACCAATTGAAAAATTGTTAAAATCAATATCTACAATAGCAAACTTTACCATTTTTCTTATCTTGATTGAGTAGATAAATGAGCTCAATCCTTCATGATATTACTACAAATAGGACTCCCTCAATTAACCACTTTTTAAGTATTTGTTTCAATATGGTCAATATTAACAAGGTGTTTTATCACTTTGGAAACAAAACCAATCATTTTGATAGGAGATGGTGATTCAAGGCATATAGGCTTCAAGGTTGAGAGACCAGGTGCTTATGAAATTACTTCTGTAAGTAATATCAGAATCAATGATTTGTGTGGCTGAGTATGCTTCAGACTAACTTTCTTGTTTTTGAATTATCTAGAATGAAGTCACTGTAGGACGTGTTCCAGAGAAAGCTGATTTAGTGATCCCAGTTGCAACAGGTATAGAAGTTCAAGTTAATAAACTGTTGTGTATTTCGATTCCTATTTTTCTTACAGTTACAAACATTTTTTCCACTGAAATAAGCTCCTTAATCTTAATGTACTATGCTTTGTTTATGTTCCAGAGAATCACAATATAATTTGAATAAATTGTTTTGTATTTACAGTGTCAGGTGTGCATGCACGCATTCGGATGAAACAAGACAATCTTCTTGTTATAGATTTGGATAGCACCAATGGAACATTCATTGGTGACAAAAGGCTGAAACCTGGAGTAGTTACCACTGTATCTTCTGGGAGTTATATTACTTTTGGTACTACTCTAACTCTCTTTTTATTTATTAGTTGCTTACCTTTTCTGTTGAATAATTATGTTAGTTTTTTTTCATTATACACATAATTATATAACCCTGTTTGTAGAAGGATCTTAAAAGACTCCATATTCCTAAGAGAATTTCAAAATGATAAACTAATCATCACTACAAGTACCCTATTCCATATTTAACCTCTGCTATTATGAATGCCAGGGGACACTAATTTGGCTATGTTCCGTGTGTCGAAAATAGAAGAGAAGGCTGCAGATACAGTTGGAGAACCAGAAGGTGAACTAGACAATGGTGACAAATCTGATAGTACTGAAACAAGTTCAACTTCTAGTTGA

Protein sequence

>MS.gene25856.t1

MEGIVKSLYLTKIPKSQTCSASLLNSPILLHSNATSVTFSSATNHLHKCFLFQQPGRVIHPKSQEKVNLGAIHASKATTPTTNATQRWILEPVGDGDSRHIGFKVERPGAYEITSNEVTVGRVPEKADLVIPVATVSGVHARIRMKQDNLLVIDLDSTNGTFIGDKRLKPGVVTTVSSGSYITFGDTNLAMFRVSKIEEKAADTVGEPEGELDNGDKSDSTETSSTSS