AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019484.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019484.01.T01 MTR_4g032660 96.020 201 4 2 1 199 1 199 1.68e-138 385
MsG0480019484.01.T01 MTR_3g012540 45.763 118 63 1 80 196 63 180 7.35e-31 111
MsG0480019484.01.T01 MTR_5g006310 38.739 111 68 0 86 196 226 336 2.93e-21 90.5
MsG0480019484.01.T01 MTR_1g114200 32.990 97 65 0 100 196 15 111 6.26e-16 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019484.01.T01 AT3G20230 65.854 164 50 2 36 199 29 186 1.89e-76 228
MsG0480019484.01.T01 AT1G08845 45.536 112 60 1 86 196 71 182 3.51e-29 107
MsG0480019484.01.T01 AT1G08845 45.536 112 60 1 86 196 71 182 3.51e-29 107
MsG0480019484.01.T01 AT1G08845 45.536 112 60 1 86 196 116 227 4.06e-29 108
MsG0480019484.01.T01 AT5G27820 34.021 97 64 0 100 196 15 111 9.74e-18 75.9
MsG0480019484.01.T01 AT3G22450 39.655 116 69 1 82 196 175 290 7.01e-15 72.0
MsG0480019484.01.T01 AT3G22450 39.655 116 69 1 82 196 175 290 7.01e-15 72.0

Find 43 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGCTTGTAGAGTAAT+TGG 0.243088 4:+20995940 MsG0480019484.01.T01:CDS
CGCTTCCATGATTTCCTGCT+GGG 0.263722 4:-20995760 None:intergenic
TCAATCCTTTCATTCTTTCT+CGG 0.316725 4:-20996018 None:intergenic
CCGCTTCCATGATTTCCTGC+TGG 0.319690 4:-20995761 None:intergenic
CCAATTACTCTACAAGCTTC+AGG 0.324712 4:-20995940 None:intergenic
AAGAGAGTTTCGAAGATCTT+TGG 0.330634 4:-20995902 None:intergenic
TCAATAAGCGTATAAATATA+TGG 0.341412 4:-20996243 None:intergenic
CTTGATACTGTTAAAGAAAA+CGG 0.356290 4:+20996060 MsG0480019484.01.T01:CDS
TTGATACTGTTAAAGAAAAC+GGG 0.383944 4:+20996061 MsG0480019484.01.T01:CDS
TGATAACGAGTTGTGTTAGT+TGG 0.399760 4:+20992996 MsG0480019484.01.T01:CDS
TCGAAGATCTTTGGCGTTTG+TGG 0.436613 4:-20995893 None:intergenic
AGAACGTACTTTGGGATTGT+TGG 0.444519 4:-20993185 None:intergenic
TTGGGATTGTTGGAGTTTGA+AGG 0.447286 4:-20993175 None:intergenic
AGAAACCCAGCAGGAAATCA+TGG 0.462560 4:+20995755 MsG0480019484.01.T01:CDS
GATAGAGATGATGGGTAAAG+AGG 0.466113 4:-20993128 None:intergenic
GATAACGAGTTGTGTTAGTT+GGG 0.471574 4:+20992997 MsG0480019484.01.T01:CDS
AGAAAGAATGAAAGGATTGA+AGG 0.478137 4:+20996021 MsG0480019484.01.T01:CDS
GTACTTTCATTCGAGCTGCT+TGG 0.483088 4:+20995704 MsG0480019484.01.T01:CDS
TGAGGTTGAGATAGAGATGA+TGG 0.486992 4:-20993137 None:intergenic
ATAGAGATGATGGGTAAAGA+GGG 0.490069 4:-20993127 None:intergenic
GGAGTTTGAAGGAGAGAGAG+TGG 0.490098 4:-20993164 None:intergenic
GAAAGGATTGAAGGTAGACT+TGG 0.492962 4:+20996030 MsG0480019484.01.T01:CDS
ATATCACTTTGCTTGTTCCA+CGG 0.510627 4:-20995861 None:intergenic
AGGAGAGAGAGTGGTTGTTG+AGG 0.517265 4:-20993155 None:intergenic
AGCGTATAAATATATGGTGC+CGG 0.531879 4:-20996237 None:intergenic
AGAGACGATGGAGACGAAGA+TGG 0.541386 4:-20993085 None:intergenic
ACAAGCTTCAGGATCTATCA+AGG 0.541521 4:-20995929 None:intergenic
TCTGTTGCGATAATAAGCTT+CGG 0.552339 4:+20993047 MsG0480019484.01.T01:CDS
TGCTCTTCTCTAAAGAGCAA+AGG 0.559161 4:+20992942 None:intergenic
ATTCACACGCATTTGAACAC+CGG 0.559198 4:+20996218 MsG0480019484.01.T01:three_prime_UTR
GCTTCAGGATCTATCAAGGA+TGG 0.567230 4:-20995925 None:intergenic
CCAGCAGGAAATCATGGAAG+CGG 0.573597 4:+20995761 MsG0480019484.01.T01:CDS
ATGAACCGAGAAAGAATGAA+AGG 0.579896 4:+20996013 MsG0480019484.01.T01:CDS
TGCGTGTGAATAAAACATCA+AGG 0.588101 4:-20996206 None:intergenic
GCTTATTGCAGAGCGATCAA+AGG 0.597674 4:+20995966 MsG0480019484.01.T01:CDS
CTTGAAAACGAAAGAGACGA+TGG 0.609475 4:-20993097 None:intergenic
AAGCTTGTAGAGTAATTGGA+AGG 0.614586 4:+20995944 MsG0480019484.01.T01:CDS
GGAAGCTGATGTATATGCAA+TGG 0.615199 4:+20995987 MsG0480019484.01.T01:CDS
AAGCTGAAAAGAAACCCAGC+AGG 0.616349 4:+20995746 MsG0480019484.01.T01:CDS
CAGAGCGATGCTGATGCTGA+AGG 0.646208 4:-20993028 None:intergenic
GAGGTTGAGATAGAGATGAT+GGG 0.647196 4:-20993136 None:intergenic
GCTTGGACACGAAGATCTCG+AGG 0.650606 4:+20995721 MsG0480019484.01.T01:CDS
CACGCGAAAGTGACACACCG+TGG 0.691365 4:+20995844 MsG0480019484.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAGTAAAAGAAATAAT+TGG + Chr4:20994686-20994705 MsG0480019484.01.T01:intron 10.0%
!! AAAAAATAAGTCAATTCAAA+CGG + Chr4:20993817-20993836 MsG0480019484.01.T01:intron 15.0%
!! AAGAAAATGTCTAATAAAAA+CGG - Chr4:20995808-20995827 None:intergenic 15.0%
!! GATATAAATCTTTATGTATA+AGG + Chr4:20993946-20993965 MsG0480019484.01.T01:intron 15.0%
!! GATATTTGATATAAAGATTA+TGG + Chr4:20994763-20994782 MsG0480019484.01.T01:intron 15.0%
!!! AAAATAAATAATTTGCACTT+TGG + Chr4:20995288-20995307 MsG0480019484.01.T01:intron 15.0%
!!! AAGTTTTTTTTTTCATGAAT+TGG - Chr4:20995431-20995450 None:intergenic 15.0%
!!! TCAACTAAAATAAGTATTTT+GGG + Chr4:20994837-20994856 MsG0480019484.01.T01:intron 15.0%
!!! TGTTACAAATTTTATTTAAC+TGG + Chr4:20996155-20996174 MsG0480019484.01.T01:three_prime_UTR 15.0%
!!! TTCAATAATCTAATTTTTCT+TGG + Chr4:20995066-20995085 MsG0480019484.01.T01:intron 15.0%
!!! TTCTTTTTCTAGTTTATTAT+TGG + Chr4:20995256-20995275 MsG0480019484.01.T01:intron 15.0%
!! AAAAATAGTTTATCCAAACA+GGG - Chr4:20993334-20993353 None:intergenic 20.0%
!! ATAATTGAAAAAAGAAGAGA+TGG - Chr4:20993222-20993241 None:intergenic 20.0%
!! TAAAAATAGTTTATCCAAAC+AGG - Chr4:20993335-20993354 None:intergenic 20.0%
!! TAATATTCATAAGCTTATCA+AGG - Chr4:20993770-20993789 None:intergenic 20.0%
!! TAATGTACACTAACTTTATA+TGG + Chr4:20995598-20995617 MsG0480019484.01.T01:intron 20.0%
!! TAATTGAAAAAAGAAGAGAT+GGG - Chr4:20993221-20993240 None:intergenic 20.0%
!! TACACTTGACATAAATATTA+TGG + Chr4:20995352-20995371 MsG0480019484.01.T01:intron 20.0%
!! TGAAAACAGTACTTATTATT+AGG - Chr4:20995050-20995069 None:intergenic 20.0%
!!! AAATATTGTCAAACTGTTTT+AGG + Chr4:20993580-20993599 MsG0480019484.01.T01:intron 20.0%
!!! AATATTGTCAAACTGTTTTA+GGG + Chr4:20993581-20993600 MsG0480019484.01.T01:intron 20.0%
!!! ACATATTGATTTTACTTATG+AGG + Chr4:20995494-20995513 MsG0480019484.01.T01:intron 20.0%
!!! ATTTTTGAGCTTATGAAAAA+TGG + Chr4:20993657-20993676 MsG0480019484.01.T01:intron 20.0%
!!! CATATTGATTTTACTTATGA+GGG + Chr4:20995495-20995514 MsG0480019484.01.T01:intron 20.0%
!!! GTCAACTAAAATAAGTATTT+TGG + Chr4:20994836-20994855 MsG0480019484.01.T01:intron 20.0%
! AAATACATCATTGGACAATA+CGG + Chr4:20993889-20993908 MsG0480019484.01.T01:intron 25.0%
! AATAAGAGAAATTGAGAGTA+TGG + Chr4:20993915-20993934 MsG0480019484.01.T01:intron 25.0%
! AGCTTATGAAAAATGGTTTA+TGG + Chr4:20993664-20993683 MsG0480019484.01.T01:intron 25.0%
! CAAAAATAACTCAATCCAAA+CGG - Chr4:20993644-20993663 None:intergenic 25.0%
! CTATATAAGCTGTTACTATT+AGG - Chr4:20994490-20994509 None:intergenic 25.0%
! CTTGATACTGTTAAAGAAAA+CGG + Chr4:20996060-20996079 MsG0480019484.01.T01:CDS 25.0%
! GAAGTCAGTGTTATAAATAT+AGG - Chr4:20994636-20994655 None:intergenic 25.0%
! GTGTAAACATCCAAAATATT+CGG - Chr4:20995337-20995356 None:intergenic 25.0%
! GTTTAAAGAAGACAAATTTC+TGG + Chr4:20994897-20994916 MsG0480019484.01.T01:intron 25.0%
! TATTGTCCAATGATGTATTT+AGG - Chr4:20993889-20993908 None:intergenic 25.0%
! TGATATAAAGATTATGGCTA+TGG + Chr4:20994769-20994788 MsG0480019484.01.T01:intron 25.0%
! TGGAAAATTTGAACTTATGA+AGG + Chr4:20994917-20994936 MsG0480019484.01.T01:intron 25.0%
! TTGATACTGTTAAAGAAAAC+GGG + Chr4:20996061-20996080 MsG0480019484.01.T01:CDS 25.0%
!! ATTGTCACTCAAATGTATTT+TGG - Chr4:20994028-20994047 None:intergenic 25.0%
!! TGATAGTGTTGTCAAATATT+GGG + Chr4:20994298-20994317 MsG0480019484.01.T01:intron 25.0%
!! TTGTCACTCAAATGTATTTT+GGG - Chr4:20994027-20994046 None:intergenic 25.0%
!! TTTTACACGAGTACTAATAA+TGG - Chr4:20995576-20995595 None:intergenic 25.0%
!!! ATTCTGTTGATTTTGATTTC+TGG + Chr4:20993261-20993280 MsG0480019484.01.T01:intron 25.0%
!!! TTCTGTTGATTTTGATTTCT+GGG + Chr4:20993262-20993281 MsG0480019484.01.T01:intron 25.0%
!!! TTTTTATTTTGCAGCTTATG+CGG + Chr4:20993349-20993368 MsG0480019484.01.T01:intron 25.0%
AAGCAGGCATTATTTAGTAT+TGG - Chr4:20995633-20995652 None:intergenic 30.0%
AATTCAGTTTAACATCTGCA+GGG + Chr4:20995682-20995701 MsG0480019484.01.T01:intron 30.0%
ACTGATCCTAAATACATCAT+TGG + Chr4:20993880-20993899 MsG0480019484.01.T01:intron 30.0%
AGAAAGAATGAAAGGATTGA+AGG + Chr4:20996021-20996040 MsG0480019484.01.T01:CDS 30.0%
ATAAATATTATGGACCGCTT+TGG + Chr4:20995362-20995381 MsG0480019484.01.T01:intron 30.0%
ATGAGAAGTGATATAATCAC+AGG - Chr4:20994963-20994982 None:intergenic 30.0%
GAGTTATGTGATTAAGAATC+TGG - Chr4:20995109-20995128 None:intergenic 30.0%
GATAGTGTTGTCAAATATTG+GGG + Chr4:20994299-20994318 MsG0480019484.01.T01:intron 30.0%
GTGATTATATCACTTCTCAT+AGG + Chr4:20994963-20994982 MsG0480019484.01.T01:intron 30.0%
TAAATATTATGGACCGCTTT+GGG + Chr4:20995363-20995382 MsG0480019484.01.T01:intron 30.0%
TAATTCAGTTTAACATCTGC+AGG + Chr4:20995681-20995700 MsG0480019484.01.T01:intron 30.0%
TATGAGAACTGGTTAATCTT+TGG + Chr4:20995231-20995250 MsG0480019484.01.T01:intron 30.0%
TCAATCCTTTCATTCTTTCT+CGG - Chr4:20996021-20996040 None:intergenic 30.0%
TTATATCACTTCTCATAGGT+AGG + Chr4:20994967-20994986 MsG0480019484.01.T01:intron 30.0%
TTGTCTGTATTTATGAGAAC+TGG + Chr4:20995220-20995239 MsG0480019484.01.T01:intron 30.0%
! ATGGTGAAATCTGAACATTT+TGG + Chr4:20994735-20994754 MsG0480019484.01.T01:intron 30.0%
! CTGATAGTGTTGTCAAATAT+TGG + Chr4:20994297-20994316 MsG0480019484.01.T01:intron 30.0%
! TGATGTATTTAGGATCAGTT+TGG - Chr4:20993879-20993898 None:intergenic 30.0%
! TTGTCAAATATTGGGGTTTT+TGG + Chr4:20994306-20994325 MsG0480019484.01.T01:intron 30.0%
!!! TTTTATTTTGCAGCTTATGC+GGG + Chr4:20993350-20993369 MsG0480019484.01.T01:intron 30.0%
AAACACATTGTCATTGCATC+GGG + Chr4:20993423-20993442 MsG0480019484.01.T01:intron 35.0%
AAACTCATTAAGACCCTGTT+TGG + Chr4:20993318-20993337 MsG0480019484.01.T01:intron 35.0%
AAGAGAGTTTCGAAGATCTT+TGG - Chr4:20995905-20995924 None:intergenic 35.0%
AAGCTTGTAGAGTAATTGGA+AGG + Chr4:20995944-20995963 MsG0480019484.01.T01:CDS 35.0%
ACAGATACCTGAATGATAAC+AGG + Chr4:20995018-20995037 MsG0480019484.01.T01:intron 35.0%
AGCGTATAAATATATGGTGC+CGG - Chr4:20996240-20996259 None:intergenic 35.0%
AGGAGTTCTTCAACTGAAAT+GGG + Chr4:20995395-20995414 MsG0480019484.01.T01:intron 35.0%
ATATCACTTTGCTTGTTCCA+CGG - Chr4:20995864-20995883 None:intergenic 35.0%
ATGAACCGAGAAAGAATGAA+AGG + Chr4:20996013-20996032 MsG0480019484.01.T01:CDS 35.0%
ATGAGTACATGGTAGAAATG+TGG + Chr4:20993295-20993314 MsG0480019484.01.T01:intron 35.0%
ATGCGTCCTACAAAATTATG+TGG + Chr4:20993993-20994012 MsG0480019484.01.T01:intron 35.0%
CAAACACATTGTCATTGCAT+CGG + Chr4:20993422-20993441 MsG0480019484.01.T01:intron 35.0%
CATTAAATCTGGGCCATTAA+TGG - Chr4:20993474-20993493 None:intergenic 35.0%
CATTAATGGCCCAGATTTAA+TGG + Chr4:20993472-20993491 MsG0480019484.01.T01:intron 35.0%
CTTACACTGTATAGTGTTAG+CGG + Chr4:20994359-20994378 MsG0480019484.01.T01:intron 35.0%
GAAGGAAGTTGTTAGTTACA+CGG + Chr4:20994935-20994954 MsG0480019484.01.T01:intron 35.0%
GAGTTATGTGATTATGAGCA+TGG - Chr4:20994522-20994541 None:intergenic 35.0%
GATAACGAGTTGTGTTAGTT+GGG + Chr4:20992997-20993016 MsG0480019484.01.T01:CDS 35.0%
GCATTTGTGACAATATCATG+TGG + Chr4:20995177-20995196 MsG0480019484.01.T01:intron 35.0%
GGTAAATACCTGTCATCATT+CGG - Chr4:20994469-20994488 None:intergenic 35.0%
GTAAATACCTGTCATCATTC+GGG - Chr4:20994468-20994487 None:intergenic 35.0%
GTGTTGAAACTATGAGTACA+TGG + Chr4:20993284-20993303 MsG0480019484.01.T01:intron 35.0%
GTTAGCGGTTCACAAATTTA+AGG + Chr4:20994374-20994393 MsG0480019484.01.T01:intron 35.0%
TAGGAGTTCTTCAACTGAAA+TGG + Chr4:20995394-20995413 MsG0480019484.01.T01:intron 35.0%
TATGTGATTATGAGCATGGT+TGG - Chr4:20994518-20994537 None:intergenic 35.0%
TCAAAACTGCAAACACATCT+AGG - Chr4:20994260-20994279 None:intergenic 35.0%
TCCTATAAGATAACCCAAAG+CGG - Chr4:20995379-20995398 None:intergenic 35.0%
TCTCAGTAAAGCGTAAAGTT+TGG + Chr4:20994546-20994565 MsG0480019484.01.T01:intron 35.0%
TCTGTTGCGATAATAAGCTT+CGG + Chr4:20993047-20993066 MsG0480019484.01.T01:CDS 35.0%
TGCGTCCTACAAAATTATGT+GGG + Chr4:20993994-20994013 MsG0480019484.01.T01:intron 35.0%
TGCGTGTGAATAAAACATCA+AGG - Chr4:20996209-20996228 None:intergenic 35.0%
TTAAAAAAGACCCTCAAGTG+TGG + Chr4:20994175-20994194 MsG0480019484.01.T01:intron 35.0%
TTTGTGTGGCCTAGATTTAA+TGG - Chr4:20993406-20993425 None:intergenic 35.0%
! ACCAAGATAGATGTGTTTTG+TGG - Chr4:20993450-20993469 None:intergenic 35.0%
! TAACTCTGTCTCGTGAATTT+TGG + Chr4:20995123-20995142 MsG0480019484.01.T01:intron 35.0%
! TGATAACGAGTTGTGTTAGT+TGG + Chr4:20992996-20993015 MsG0480019484.01.T01:CDS 35.0%
!! ATAGAGATGATGGGTAAAGA+GGG - Chr4:20993130-20993149 None:intergenic 35.0%
!! ATCTATCTTGGTGCCATTAA+TGG + Chr4:20993458-20993477 MsG0480019484.01.T01:intron 35.0%
!! ATTGGCACTGAACTTTTCAT+AGG + Chr4:20994704-20994723 MsG0480019484.01.T01:intron 35.0%
!! TTGGCACTGAACTTTTCATA+GGG + Chr4:20994705-20994724 MsG0480019484.01.T01:intron 35.0%
AAAAAGAAGAGATGGGAGAG+TGG - Chr4:20993214-20993233 None:intergenic 40.0%
AAAAGAAGAGATGGGAGAGT+GGG - Chr4:20993213-20993232 None:intergenic 40.0%
AACACATTGTCATTGCATCG+GGG + Chr4:20993424-20993443 MsG0480019484.01.T01:intron 40.0%
ACAAGCTTCAGGATCTATCA+AGG - Chr4:20995932-20995951 None:intergenic 40.0%
ACTCTTATAAGCTAGAAGCC+TGG - Chr4:20994813-20994832 None:intergenic 40.0%
ATACATACCCGAATGATGAC+AGG + Chr4:20994458-20994477 MsG0480019484.01.T01:intron 40.0%
ATTATGGCTATGGTCCAATG+TGG + Chr4:20994779-20994798 MsG0480019484.01.T01:intron 40.0%
ATTCACACGCATTTGAACAC+CGG + Chr4:20996218-20996237 MsG0480019484.01.T01:three_prime_UTR 40.0%
CAACTTTGCTAAAGGAAGAC+AGG + Chr4:20994200-20994219 MsG0480019484.01.T01:intron 40.0%
CCAATTACTCTACAAGCTTC+AGG - Chr4:20995943-20995962 None:intergenic 40.0%
CCTGAAGCTTGTAGAGTAAT+TGG + Chr4:20995940-20995959 MsG0480019484.01.T01:CDS 40.0%
CTGTCTTCCTTTAGCAAAGT+TGG - Chr4:20994202-20994221 None:intergenic 40.0%
CTTGAAAACGAAAGAGACGA+TGG - Chr4:20993100-20993119 None:intergenic 40.0%
GAAAGGATTGAAGGTAGACT+TGG + Chr4:20996030-20996049 MsG0480019484.01.T01:CDS 40.0%
GAGGTTGAGATAGAGATGAT+GGG - Chr4:20993139-20993158 None:intergenic 40.0%
GCAATGACAATGTGTTTGTG+TGG - Chr4:20993420-20993439 None:intergenic 40.0%
GCCACAAAACACATCTATCT+TGG + Chr4:20993446-20993465 MsG0480019484.01.T01:intron 40.0%
GCTTGTCAAAATAGTCCGTT+TGG + Chr4:20993626-20993645 MsG0480019484.01.T01:intron 40.0%
GGAAGCTGATGTATATGCAA+TGG + Chr4:20995987-20996006 MsG0480019484.01.T01:CDS 40.0%
GGCATAAGCACTTATCACTA+AGG + Chr4:20993537-20993556 MsG0480019484.01.T01:intron 40.0%
GTACAGACCTGTTATCATTC+AGG - Chr4:20995028-20995047 None:intergenic 40.0%
GTGAGAAGAAGAAGAAGAAG+TGG + Chr4:20992970-20992989 MsG0480019484.01.T01:five_prime_UTR 40.0%
TCAGTGTTACAGATGCTACA+TGG - Chr4:20994583-20994602 None:intergenic 40.0%
TCCAATGTGGATAAACTTCC+AGG + Chr4:20994792-20994811 MsG0480019484.01.T01:intron 40.0%
TGAGGTTGAGATAGAGATGA+TGG - Chr4:20993140-20993159 None:intergenic 40.0%
TTGGGATTGTTGGAGTTTGA+AGG - Chr4:20993178-20993197 None:intergenic 40.0%
TTTGGATTGCGACACTGTTT+GGG - Chr4:20993861-20993880 None:intergenic 40.0%
TTTGGGAGAACTCATGACAT+GGG - Chr4:20993844-20993863 None:intergenic 40.0%
! ACCGCTTTGGGTTATCTTAT+AGG + Chr4:20995375-20995394 MsG0480019484.01.T01:intron 40.0%
! CGAGTCCCACATAATTTTGT+AGG - Chr4:20994002-20994021 None:intergenic 40.0%
!! AGAACGTACTTTGGGATTGT+TGG - Chr4:20993188-20993207 None:intergenic 40.0%
!! AGTGGGTTAGAACGTACTTT+GGG - Chr4:20993196-20993215 None:intergenic 40.0%
!! GATAGAGATGATGGGTAAAG+AGG - Chr4:20993131-20993150 None:intergenic 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG + Chr4:20993373-20993392 MsG0480019484.01.T01:intron 40.0%
!! TGGCACTGAACTTTTCATAG+GGG + Chr4:20994706-20994725 MsG0480019484.01.T01:intron 40.0%
!!! TTGGTTACTTTTTCCTTCCG+TGG + Chr4:20995307-20995326 MsG0480019484.01.T01:intron 40.0%
AAGCTGAAAAGAAACCCAGC+AGG + Chr4:20995746-20995765 MsG0480019484.01.T01:CDS 45.0%
AGAAACCCAGCAGGAAATCA+TGG + Chr4:20995755-20995774 MsG0480019484.01.T01:CDS 45.0%
AGTGCTTATGCCATAAGCTG+CGG - Chr4:20993529-20993548 None:intergenic 45.0%
ATGGCCCAGATTTAATGGCA+CGG + Chr4:20993477-20993496 MsG0480019484.01.T01:intron 45.0%
CCAAAATATTCGGATCGCCA+CGG - Chr4:20995327-20995346 None:intergenic 45.0%
GCCTGGAAGTTTATCCACAT+TGG - Chr4:20994796-20994815 None:intergenic 45.0%
GCTAAAGGAAGACAGGTTTG+AGG + Chr4:20994207-20994226 MsG0480019484.01.T01:intron 45.0%
GCTTATTGCAGAGCGATCAA+AGG + Chr4:20995966-20995985 MsG0480019484.01.T01:CDS 45.0%
GCTTCAGGATCTATCAAGGA+TGG - Chr4:20995928-20995947 None:intergenic 45.0%
GTACTTTCATTCGAGCTGCT+TGG + Chr4:20995704-20995723 MsG0480019484.01.T01:CDS 45.0%
GTGGCCTAGATTTAATGGCA+CGG - Chr4:20993401-20993420 None:intergenic 45.0%
GTGTGGACCAACTTTGCTAA+AGG + Chr4:20994192-20994211 MsG0480019484.01.T01:intron 45.0%
GTTTGGATTGCGACACTGTT+TGG - Chr4:20993862-20993881 None:intergenic 45.0%
GTTTGGGAGAACTCATGACA+TGG - Chr4:20993845-20993864 None:intergenic 45.0%
TCGAAGATCTTTGGCGTTTG+TGG - Chr4:20995896-20995915 None:intergenic 45.0%
TGATGACAGATTGCAGACCA+TGG - Chr4:20994339-20994358 None:intergenic 45.0%
TTGGGAGAACTCATGACATG+GGG - Chr4:20993843-20993862 None:intergenic 45.0%
! CAAAGTTGGTCCACACTTGA+GGG - Chr4:20994188-20994207 None:intergenic 45.0%
! CTTTTCATAGGGGCTGTGAA+TGG + Chr4:20994716-20994735 MsG0480019484.01.T01:intron 45.0%
!! CAGCACTTTGGTGCCATTAA+TGG - Chr4:20993505-20993524 None:intergenic 45.0%
!! GAGTGGGTTAGAACGTACTT+TGG - Chr4:20993197-20993216 None:intergenic 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + Chr4:20993489-20993508 MsG0480019484.01.T01:intron 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - Chr4:20993508-20993489 None:intergenic 45.0%
!! AATATAATAAATAAAAAAGA+AGG - Chr4:20994664-20994683 None:intergenic 5.0%
AATATTCGGATCGCCACGGA+AGG - Chr4:20995323-20995342 None:intergenic 50.0%
AGAGACGATGGAGACGAAGA+TGG - Chr4:20993088-20993107 None:intergenic 50.0%
AGCTTATGCGGGTAGCACTT+TGG + Chr4:20993361-20993380 MsG0480019484.01.T01:intron 50.0%
AGGAGAGAGAGTGGTTGTTG+AGG - Chr4:20993158-20993177 None:intergenic 50.0%
CAAGTCAGCACAAGAGAAGC+AGG - Chr4:20995649-20995668 None:intergenic 50.0%
CCAGCAGGAAATCATGGAAG+CGG + Chr4:20995761-20995780 MsG0480019484.01.T01:CDS 50.0%
CGCTTCCATGATTTCCTGCT+GGG - Chr4:20995763-20995782 None:intergenic 50.0%
GGAGTTTGAAGGAGAGAGAG+TGG - Chr4:20993167-20993186 None:intergenic 50.0%
GTGCTTATGCCATAAGCTGC+GGG - Chr4:20993528-20993547 None:intergenic 50.0%
TGACAGATTGCAGACCATGG+CGG - Chr4:20994336-20994355 None:intergenic 50.0%
! CCGTGGCGATCCGAATATTT+TGG + Chr4:20995324-20995343 MsG0480019484.01.T01:intron 50.0%
! GCAAAGTTGGTCCACACTTG+AGG - Chr4:20994189-20994208 None:intergenic 50.0%
! GGCACCGTGCCATTAAATCT+AGG + Chr4:20993394-20993413 MsG0480019484.01.T01:intron 50.0%
! GGCACCGTGCCATTAAATCT+GGG - Chr4:20993413-20993394 None:intergenic 50.0%
! TGGCACCGTGCCATTAAATC+TGG - Chr4:20993412-20993393 None:intergenic 50.0%
ATAAGCTGCGGGCAGCACTT+TGG - Chr4:20993517-20993536 None:intergenic 55.0%
CAGAGCGATGCTGATGCTGA+AGG - Chr4:20993031-20993050 None:intergenic 55.0%
CCGCTTCCATGATTTCCTGC+TGG - Chr4:20995764-20995783 None:intergenic 55.0%
GACAGATTGCAGACCATGGC+GGG - Chr4:20994335-20994354 None:intergenic 55.0%
GCTTGGACACGAAGATCTCG+AGG + Chr4:20995721-20995740 MsG0480019484.01.T01:CDS 55.0%
!! AAAGTGCTGCCCGCAGCTTA+TGG + Chr4:20993516-20993535 MsG0480019484.01.T01:intron 55.0%
CACGCGAAAGTGACACACCG+TGG + Chr4:20995844-20995863 MsG0480019484.01.T01:CDS 60.0%
!!! GGGTTTTTGGCTTCCCGCCA+TGG + Chr4:20994319-20994338 MsG0480019484.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 20992953 20996261 20992953 ID=MsG0480019484.01;Name=MsG0480019484.01
Chr4 mRNA 20992953 20996261 20992953 ID=MsG0480019484.01.T01;Parent=MsG0480019484.01;Name=MsG0480019484.01.T01;_AED=0.47;_eAED=0.47;_QI=42|1|1|1|0|0.5|2|163|199
Chr4 exon 20992953 20993198 20992953 ID=MsG0480019484.01.T01:exon:10175;Parent=MsG0480019484.01.T01
Chr4 exon 20995703 20996261 20995703 ID=MsG0480019484.01.T01:exon:10176;Parent=MsG0480019484.01.T01
Chr4 five_prime_UTR 20992953 20992994 20992953 ID=MsG0480019484.01.T01:five_prime_utr;Parent=MsG0480019484.01.T01
Chr4 CDS 20992995 20993198 20992995 ID=MsG0480019484.01.T01:cds;Parent=MsG0480019484.01.T01
Chr4 CDS 20995703 20996098 20995703 ID=MsG0480019484.01.T01:cds;Parent=MsG0480019484.01.T01
Chr4 three_prime_UTR 20996099 20996261 20996099 ID=MsG0480019484.01.T01:three_prime_utr;Parent=MsG0480019484.01.T01
Gene Sequence

>MsG0480019484.01.T01

ATGATAACGAGTTGTGTTAGTTGGGCATCATCACCTTCAGCATCAGCATCGCTCTGTTGCGATAATAAGCTTCGGCAACTAAAACTTCAACCATCTTCGTCTCCATCGTCTCTTTCGTTTTCAAGTTCGTTTCCCTCTTTACCCATCATCTCTATCTCAACCTCAACAACCACTCTCTCTCCTTCAAACTCCAACAATCCCAAAGGTACTTTCATTCGAGCTGCTTGGACACGAAGATCTCGAGGTGAAGCTGAAAAGAAACCCAGCAGGAAATCATGGAAGCGGAGAACAGATATGTACATGAGACCGTTTTTATTAGACATTTTCTTTTCAAAGAAATTCGTTCACGCGAAAGTGACACACCGTGGAACAAGCAAAGTGATATGTGCTGCTACCACAAACGCCAAAGATCTTCGAAACTCTCTTCCATCCTTGATAGATCCTGAAGCTTGTAGAGTAATTGGAAGGCTTATTGCAGAGCGATCAAAGGAAGCTGATGTATATGCAATGGCGTATGAACCGAGAAAGAATGAAAGGATTGAAGGTAGACTTGGAATCATTCTTGATACTGTTAAAGAAAACGGGATTCTTTTTGTTTGA

Protein sequence

>MsG0480019484.01.T01

MITSCVSWASSPSASASLCCDNKLRQLKLQPSSSPSSLSFSSSFPSLPIISISTSTTTLSPSNSNNPKGTFIRAAWTRRSRGEAEKKPSRKSWKRRTDMYMRPFLLDIFFSKKFVHAKVTHRGTSKVICAATTNAKDLRNSLPSLIDPEACRVIGRLIAERSKEADVYAMAYEPRKNERIEGRLGIILDTVKENGILFV*